+D	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Prokaryotic Defense System - Paenibacillus tianjinensis</h2>
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A<b>CRISPR-Cas system</b>
B  Universal Cas proteins
B  Type I CRISPR-Cas system
C    Type I signiture cas proteins
C    Subtype I-A factors
C    Subtype I-B factors
C    Subtype I-C factors
C    Subtype I-D factors
C    Subtype I-E factors
C    Subtype I-F factors
C    Subtype I-U factors
B  Type II CRISPR-Cas system
C    Type II signiture cas proteins
C    Subtype II-A factors
C    Subtype II-B factors
B  Type III CRISPR-Cas system
C    Type III signiture cas proteins
C    Subtype III-A factors
C    Subtype III-B factors
C    Subtype III-U factors
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A<b>Restriction and modification system (R-M system)</b>
B  Type I R-M system
B  Type II R-M system
C    Restriction endonucleases
D      JRJ22_13430 hypothetical protein	K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4] 
C    DNA methyltransferases
D      JRJ22_19000 DNA adenine methylase	K06223 dam; DNA adenine methylase [EC:2.1.1.72] 
D      JRJ22_19290 DNA adenine methylase	K06223 dam; DNA adenine methylase [EC:2.1.1.72] 
D      JRJ22_19510 site-specific DNA-methyltransferase	K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] 
D      JRJ22_19135 DNA cytosine methyltransferase	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
D      JRJ22_19735 DNA cytosine methyltransferase	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
B  Type III R-M system
C    JRJ22_16175 DEAD/DEAH box helicase family protein	K01156 res; type III restriction enzyme [EC:3.1.21.5] 
C    JRJ22_16180 site-specific DNA-methyltransferase	K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] 
B  Type IV R-M system
C    JRJ22_02900 DUF3578 domain-containing protein	K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] 
C    JRJ22_03085 AAA family ATPase	K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] 
C    JRJ22_03090 McrC family protein	K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC 
C    JRJ22_08195 restriction endonuclease	K07448 mrr; restriction system protein 
C    JRJ22_06140 restriction endonuclease	K07448 mrr; restriction system protein 
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A<b>Toxin-antitoxin system (TA system)</b>
B  Type I TA system
C    Hok-Sok
C    SymE-SymR
C    Ldr-Rdl
C    TisB-IstR
C    Ibs-Sib
C    ShoB-OhsC
C    RalR-RalA
B  Type II TA system
C    MazF-MazE
D      JRJ22_18530 type II toxin-antitoxin system PemK/MazF family toxin	K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] 
D      JRJ22_19630 type II toxin-antitoxin system PemK/MazF family toxin	K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] 
D      JRJ22_04815 type II toxin-antitoxin system PemK/MazF family toxin	K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] 
D      JRJ22_04810 ribbon-helix-helix protein, CopG family	K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI 
C    ChpB-ChpS
D      JRJ22_01140 AbrB family transcriptional regulator	K18842 chpS; antitoxin ChpS 
C    YhaV-PrlF
C    RelE/StbE-RelB/StbD
C    YafQ-dinJ
C    YoeB-YefM
C    HipA-HipB
C    HicA-HicB
C    YafO-YafN
C    Hha-TomB
C    PspC-PspB
D      JRJ22_06010 PspC domain-containing protein	K03973 pspC; phage shock protein C 
C    CcdB-CcdA
C    ParE-ParD
C    Doc-Phd
D      JRJ22_01135 type II toxin-antitoxin system death-on-curing family toxin	K07341 doc; death on curing protein 
C    HigB-HigA
C    MqsR-MqsA
C    VapC-VapB
C    PezT-PezA
C    YobL-YobK
C    YokI-YokJ
C    YqcG-YqcF
C    YxiD-YxxD
C    FitB-FitA
C    BC_0920-BC_0921
C    Type II TA system related factors
D      JRJ22_21790 ftsZ; cell division protein FtsZ	K03531 ftsZ; cell division protein FtsZ 
D      JRJ22_23085 rod shape-determining protein	K03569 mreB; rod shape-determining protein MreB and related proteins 
D      JRJ22_27055 rod shape-determining protein	K03569 mreB; rod shape-determining protein MreB and related proteins 
D      JRJ22_17675 gyrA; DNA gyrase subunit A	K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] 
D      JRJ22_17680 parE; DNA topoisomerase IV subunit B	K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] 
B  Type III TA system
C    AbiQ system
B  Type IV TA system
C    YeeV-YeeU
C    CptA-CptB
B  Type V TA system
C    GhoT-GhoS
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A<b>DNA phosphothiolation system</b>
B  Sulfur modification proteins
C    JRJ22_21980 cysteine desulfurase	K04487 iscS; cysteine desulfurase [EC:2.8.1.7] 
C    JRJ22_22495 cysteine desulfurase	K04487 iscS; cysteine desulfurase [EC:2.8.1.7] 
B  DNA phosphorothioation-dependent restriction proteins
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#Last updated: November 7, 2023