+D
#
Transfer RNA Biogenesis - Planktomarina temperata
%
!
AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D RCA23_c14880 gltX2; glutamyl-tRNA synthase 2 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RCA23_c25100 gltX1; glutamyl-tRNA synthase 1 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RCA23_c28100 proS; prolyl-tRNA synthase ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RCA23_c09100 ileS; isoleucyl-tRNA synthase IleS K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RCA23_c29190 leuS; leucyl-tRNA synthase LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RCA23_c22170 metG; methionyl-tRNA synthase MetG K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RCA23_c16840 arginyl-tRNA synthase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RCA23_c01740 aspS; aspartyl-tRNA synthase AspS K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D RCA23_c16150 alaS; alanyl-tRNA synthase AlaS K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RCA23_c27940 thrS; threonyl-tRNA synthase ThrS K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RCA23_c18380 serS; seryl-tRNA synthase SerS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RCA23_c16660 cysS; cysteinyl-tRNA synthase CysS K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RCA23_c09780 valS; valyl-tRNA synthase ValS K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RCA23_c21120 hisS; histidyl-tRNA synthase HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RCA23_c06130 pheS; phenylalanyl-tRNA synthase alpha chain PheS K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RCA23_c06150 pheT; phenylalanyl-tRNA synthase beta chain PheT K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RCA23_c17260 tyrS; tyrosyl-tRNA synthase TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RCA23_c21470 trpS; tryptophanyl-tRNA synthase TrpS K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
C AARS associated factors
D RCA23_c01070 HIT-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D RCA23_c20060 trmB; tRNA (guanine-N(7)-)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D RCA23_c09060 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RCA23_c28630 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D RCA23_c16300 putative cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D RCA23_c26690 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RCA23_c15160 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RCA23_c30490 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D RCA23_c30500 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
D RCA23_c30120 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D RCA23_c23750 putative ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D RCA23_c30560 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D RCA23_c13230 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D RCA23_c30230 putative 3'-5'-exonuclease K03684 rnd; ribonuclease D [EC:3.1.13.5]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D RCA23_c29190 leuS; leucyl-tRNA synthase LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RCA23_c25030 lysS; lysyl-tRNA synthase LysS K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D RCA23_c28100 proS; prolyl-tRNA synthase ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D RCA23_c17260 tyrS; tyrosyl-tRNA synthase TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RCA23_c21470 trpS; tryptophanyl-tRNA synthase TrpS K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RCA23_c27940 thrS; threonyl-tRNA synthase ThrS K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RCA23_c09100 ileS; isoleucyl-tRNA synthase IleS K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RCA23_c16150 alaS; alanyl-tRNA synthase AlaS K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RCA23_c09780 valS; valyl-tRNA synthase ValS K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RCA23_c22170 metG; methionyl-tRNA synthase MetG K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RCA23_c18380 serS; seryl-tRNA synthase SerS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RCA23_c01740 aspS; aspartyl-tRNA synthase AspS K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RCA23_c02350 glyQ; glycyl-tRNA synthase alpha subunit GlyQ K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RCA23_c02370 glyS; glycyl-tRNA synthase beta subunit GlyS K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RCA23_c16660 cysS; cysteinyl-tRNA synthase CysS K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RCA23_c14880 gltX2; glutamyl-tRNA synthase 2 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RCA23_c25100 gltX1; glutamyl-tRNA synthase 1 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RCA23_c16840 arginyl-tRNA synthase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RCA23_c06130 pheS; phenylalanyl-tRNA synthase alpha chain PheS K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RCA23_c06150 pheT; phenylalanyl-tRNA synthase beta chain PheT K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RCA23_c21120 hisS; histidyl-tRNA synthase HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RCA23_c15370 gluQ; glutamyl-Q tRNA(Asp) synthase GluQ K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
C Trans-editing factors
B tRNA modification factors
C Deaminases
D RCA23_c19250 putative deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D RCA23_c18580 dus; tRNA-dihydrouridine synthase Dus K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D RCA23_c15730 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
C Methylthiotransferases
D RCA23_c20120 RNA modification enzyme, MiaB family K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D RCA23_c00760 miaB; (dimethylallyl)adenosine tRNA methylthiotransferase MiaB K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
C Methyltransferases
D RCA23_c12840 trmJ; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D RCA23_c15390 gid; tRNA uridine 5-carboxymethylaminomethyl modification enzyme Gid K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D RCA23_c20060 trmB; tRNA (guanine-N(7)-)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D RCA23_c29030 trmD; tRNA (guanine-N(1)-)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D RCA23_c30490 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
C Psudouridine synthases
D RCA23_c09060 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RCA23_c28630 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D RCA23_c28930 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
C Thiolation factors
D RCA23_c15290 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RCA23_c23780 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D RCA23_c13340 putative sulfurtransferase tusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D RCA23_c09600 hypothetical protein, iron-sulfur cluster assembly protein K13628 iscA; iron-sulfur cluster assembly protein
D RCA23_c16300 putative cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RCA23_c09730 ygfZ; putative tRNA modifying protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D RCA23_c30500 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RCA23_c15160 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RCA23_c14570 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D RCA23_c04340 putative electron transport protein yjeS K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D RCA23_c09620 tgt; queuine tRNA-ribosyltransferase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D RCA23_c19730 tilS; tRNA(Ile)-lysidine synthase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D RCA23_c26700 putative glycoprotease family protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D RCA23_c26690 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RCA23_c26680 gcp; O-sialoglycoprotein endopeptidase Gcp K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D RCA23_c26710 hypothetical protein UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
B tRNA degradation factors
C RCA23_c00270 putative ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C RCA23_c28910 pnp; polyribonucleotide nucleotidyltransferase Pnp K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024