+F Repair protein KO
#
DNA Repair and Recombination Proteins - Planktomarina temperata
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D RCA23_c10830 phrB1; deoxyribodipyrimidine photo-lyase PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RCA23_c26660 phrB2; deoxyribodipyrimidine photo-lyase PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RCA23_c09430 DNA photolyase, FAD-binding/cryptochrome K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E RCA23_c00450 yfhQ; A/G-specific adenine glycosylase YfhQ K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E RCA23_c01020 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D RCA23_c30660 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RCA23_c30920 putative mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RCA23_c21290 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D RCA23_c27180 putative HTH-type transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RCA23_c10830 phrB1; deoxyribodipyrimidine photo-lyase PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RCA23_c26660 phrB2; deoxyribodipyrimidine photo-lyase PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RCA23_c09430 DNA photolyase, FAD-binding/cryptochrome K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RCA23_c09420 hypothetical protein, photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D RCA23_c30100 putative alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E RCA23_c05640 uracil DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E RCA23_c16590 HhH-GPD superfamily base excision DNA repair protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E RCA23_c00450 yfhQ; A/G-specific adenine glycosylase YfhQ K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E RCA23_c05880 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E RCA23_c31040 mutM; formamidopyrimidine-DNA glycosylase MutM K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E RCA23_c01020 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E RCA23_c00490 putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E RCA23_c16870 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E RCA23_c21870 putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E RCA23_c15320 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E RCA23_c01110 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E RCA23_c14610 uvrA; uvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
E RCA23_c24990 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
E RCA23_c05510 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
E RCA23_c10240 putative DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RCA23_c01110 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E RCA23_c15320 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F RCA23_c27300 rpoB; DNA-directed RNA polymerase beta subunit RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F RCA23_c27290 rpoC; DNA-directed RNA polymerase beta subunit RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F RCA23_c23980 rpoA; DNA-directed RNA polymerase alpha subunit RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F RCA23_c25770 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F RCA23_c15860 mfd; transcription-repair-coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E RCA23_c30590 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E RCA23_c28730 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E RCA23_c12420 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E RCA23_c27550 xseA; exodeoxyribonuclease 7 large subunit XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E RCA23_c04410 xseB; exodeoxyribonuclease 7 small subunit XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E RCA23_c21140 dnaE2; DNA polymerase III 1 alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E RCA23_c00020 dnaN; DNA polymerase III beta subunit DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E RCA23_c17760 putative DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E RCA23_c29210 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E RCA23_c24940 hypothetical protein, DNA polymerase III delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E RCA23_c30450 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E RCA23_c06230 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E RCA23_c15320 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E RCA23_c10240 putative DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RCA23_c15110 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E RCA23_c16160 recA; protein RecA K03553 recA; recombination protein RecA
E RCA23_c19830 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E RCA23_c19820 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E RCA23_c19840 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E RCA23_c09160 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E RCA23_c12420 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D RecFOR pathway proteins
E RCA23_c16160 recA; protein RecA K03553 recA; recombination protein RecA
E RCA23_c13910 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E RCA23_c00030 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E RCA23_c15330 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E RCA23_c21870 putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E RCA23_c25680 putative DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E RCA23_c06210 recR; recombination protein RecR K06187 recR; recombination protein RecR
E RCA23_c10540 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E RCA23_c19830 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E RCA23_c19820 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E RCA23_c19840 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E RCA23_c30350 addA; double-strand break repair helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E RCA23_c30340 addB; double-strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F RCA23_c12870 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F RCA23_c00050 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F RCA23_c19490 topA; DNA topoisomerase TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F RCA23_c04550 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F RCA23_c21870 putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F RCA23_c25680 putative DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F RCA23_c06210 recR; recombination protein RecR K06187 recR; recombination protein RecR
F RCA23_c15320 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F RCA23_c16760 ihfA; integration host factor alpha subunit IhfA K04764 ihfA; integration host factor subunit alpha
F RCA23_c19980 ihfB; integration host factor beta subunit IhfB K05788 ihfB; integration host factor subunit beta
E Supressor
F RCA23_c12420 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F RCA23_c00180 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F RCA23_c14610 uvrA; uvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
F RCA23_c24990 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D RCA23_c28530 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D RCA23_c16160 recA; protein RecA K03553 recA; recombination protein RecA
D RCA23_c14900 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D RCA23_c10540 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D RCA23_c22150 hypothetical protein K14160 imuA; protein ImuA
D RCA23_c04750 putative protein ImuB K14161 imuB; protein ImuB
D RCA23_c00240 dnaE1; DNA polymerase III 2 alpha subunit DnaE K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D RCA23_c15110 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D RCA23_c19680 putative DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D RCA23_c30660 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RCA23_c30920 putative mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RCA23_c21290 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RCA23_c17110 nrdJ; vitamin B12-dependent ribonucleotide reductase NrdJ K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RCA23_c21080 vitamin B12-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024