+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Paenarthrobacter ureafaciens

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D FV140_13655 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D FV140_12125 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins D FV140_19765 GNAT family N-acetyltransferase K13525 VCP; transitional endoplasmic reticulum ATPase C Other pre-60S particles B Other ribosome biogenesis factors C FV140_11290 GTPase Era K03595 era; GTPase C FV140_11905 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C FV140_10320 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor C FV140_07625 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA C FV140_11495 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB C FV140_16185 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D FV140_06660 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D FV140_08960 rRNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D FV140_11855 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D FV140_07820 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D FV140_13685 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D FV140_11315 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D FV140_21900 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D FV140_06625 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D FV140_08045 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D FV140_11085 methyltransferase domain-containing protein K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D FV140_04600 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D FV140_08045 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D FV140_03650 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D FV140_08135 rRNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D FV140_08505 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C FV140_15755 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C FV140_19535 GNAT family N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C FV140_15615 GNAT family N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C FV140_12810 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C FV140_18285 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor B rRNA processing factors C FV140_13655 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C FV140_11925 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] C FV140_11535 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C FV140_16425 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C FV140_11290 GTPase Era K03595 era; GTPase C FV140_14460 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C FV140_15505 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C FV140_08155 ribosome biogenesis GTPase Der K03977 engA; GTPase C FV140_11905 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] C FV140_07825 hflX; GTPase HflX K03665 hflX; GTPase B Other maturation factors C FV140_14275 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C FV140_11600 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C FV140_07640 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A C FV140_07620 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP C FV140_07260 RNA-binding S4 domain-containing protein K14761 rlbA; ribosome-associated protein C FV140_11875 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein C FV140_11300 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor C FV140_15445 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase C FV140_13665 DUF177 domain-containing protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024