+E Transcription factors KO
#
Transcription Factors - Pelosinus sp. UFO1
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D UFO1_3376 transcriptional regulator with only HTH domain, AraC family K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator
D UFO1_3872 transcriptional regulator with only HTH domain, AraC family K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D UFO1_1149 transcriptional regulator with only HTH domain, AraC family K13653 K13653; AraC family transcriptional regulator
D UFO1_2657 transcriptional activator, AraC family K13653 K13653; AraC family transcriptional regulator
D UFO1_1179 transcription activator effector binding protein K13653 K13653; AraC family transcriptional regulator
D UFO1_2996 transcriptional regulator with only HTH domain, AraC family K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
D UFO1_1816 transcriptional regulator, LysR family K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D UFO1_3943 transcriptional regulator, LysR family K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D UFO1_1736 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D UFO1_0287 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D UFO1_0401 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D UFO1_3366 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D UFO1_0993 transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D UFO1_4291 transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D UFO1_4253 sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D UFO1_3151 transcriptional regulator, DeoR family K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor
D UFO1_3176 transcriptional regulator, DeoR family K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor
D UFO1_1047 transcriptional regulator, DeoR family K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor
D UFO1_4401 transcriptional regulator, CBS sensor domains and BirA family winged HTH K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D UFO1_1260 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D UFO1_0636 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D UFO1_1794 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D UFO1_2987 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D UFO1_3159 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D UFO1_3834 transcriptional regulator, LacI family K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D UFO1_3461 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
C GntR family
D UFO1_3321 putative transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D UFO1_3106 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D UFO1_3608 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D UFO1_3560 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D UFO1_0284 transcriptional regulator, GntR family with aminotransferase domain containing protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D UFO1_0350 transcriptional regulator, GntR family with aminotransferase domain containing protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D UFO1_3947 transcriptional regulator, GntR family with aminotransferase domain containing protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D UFO1_3494 transcriptional regulator, GntR family with aminotransferase domain containing protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D UFO1_0389 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D UFO1_3723 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D UFO1_0657 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D UFO1_0677 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D UFO1_0303 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D UFO1_3657 transcriptional regulator, TetR family K18140 envR; TetR/AcrR family transcriptional regulator, acrEF/envCD operon repressor
D UFO1_3407 transcriptional regulator, TetR family K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon
C Lrp/AsnC family
D UFO1_2980 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D UFO1_3697 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D UFO1_3567 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D UFO1_0902 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D UFO1_0701 transcriptional regulator, AsnC family K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
C LuxR family
C MarR family
D UFO1_0117 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D UFO1_0384 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D UFO1_3594 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D UFO1_1216 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D UFO1_0742 transcriptional regulator, MerR family K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
D UFO1_0757 transcriptional regulator, MerR family K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
D UFO1_0662 transcriptional regulator, MerR family K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
C Fur family
D UFO1_1916 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D UFO1_0068 ferric uptake regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D UFO1_4664 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D UFO1_3667 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D UFO1_0054 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D UFO1_0647 transcriptional regulator, Crp/Fnr family K21555 cooA; CRP/FNR family transcriptional regulator, carbon monoxide oxidation system transcription regulator
D UFO1_0975 transcriptional regulator, Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D UFO1_1921 transcriptional regulator, BadM/Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D UFO1_0848 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D UFO1_3328 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D UFO1_4109 transcriptional regulator, BadM/Rrf2 family K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D UFO1_4641 transcriptional regulator, XRE family with cupin 2 sensor K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D UFO1_3509 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator
C Other families
D UFO1_1004 iron (metal) dependent repressor, DtxR family K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D UFO1_3580 transcriptional regulator, RpiR family K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator
D UFO1_3639 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D UFO1_0504 BirA bifunctional protein, biotin operon repressor and biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D UFO1_3648 transcriptional regulator, TrmB family K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D UFO1_4301 purine operon repressor, PurR K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D UFO1_3953 PTS system transcriptional activator K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
D UFO1_3798 sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D UFO1_0887 putative sigma54 specific transcriptional regulator with PAS/PAC sensor K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D UFO1_0088 PAS modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D UFO1_4681 sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D UFO1_4013 transcriptional regulator, CdaR K02647 cdaR; carbohydrate diacid regulator
D UFO1_1639 PAS modulated sigma54 specific transcriptional regulator, Fis family K06714 rocR; arginine utilization regulatory protein
D UFO1_2964 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D UFO1_2586 GTP-sensing pleiotropic transcriptional repressor CodY K03706 codY; transcriptional pleiotropic repressor
D UFO1_4628 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D UFO1_1256 putative transcriptional regulator, CopG family K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D UFO1_0939 PTS modulated transcriptional regulator, MtlR family K03483 mtlR; mannitol operon transcriptional activator
D UFO1_0719 transcriptional antiterminator, BglG K03483 mtlR; mannitol operon transcriptional activator
D UFO1_1783 transcriptional antiterminator, BglG K03483 mtlR; mannitol operon transcriptional activator
D UFO1_0358 transcriptional antiterminator, BglG K03483 mtlR; mannitol operon transcriptional activator
D UFO1_0772 PTS modulated transcriptional regulator, MtlR family K03483 mtlR; mannitol operon transcriptional activator
D UFO1_1052 PTS modulated transcriptional regulator, MtlR family K03491 licR; probable licABCH operon transcriptional regulator
C Others
D UFO1_0927 metal sensitive transcriptional repressor K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D UFO1_0267 transcriptional regulator, PucR family K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D UFO1_0269 transcriptional regulator, PucR family K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D UFO1_0271 transcriptional regulator, PucR family K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D UFO1_2493 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D UFO1_4321 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D UFO1_0469 transcriptional regulator, AbrB family K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D UFO1_2474 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D UFO1_4490 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D UFO1_4496 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D UFO1_0535 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D UFO1_4027 glycerol-3-phosphate responsive antiterminator, GlpP K02443 glpP; glycerol uptake operon antiterminator
D UFO1_4028 glycerol-3-phosphate responsive antiterminator, GlpP K02443 glpP; glycerol uptake operon antiterminator
D UFO1_1963 arginine repressor, ArgR K03402 argR; transcriptional regulator of arginine metabolism
D UFO1_2755 Glucokinase K02565 nagC; N-acetylglucosamine repressor
D UFO1_3127 Glucokinase K02565 nagC; N-acetylglucosamine repressor
D UFO1_3752 Glucokinase K15545 mlc; transcriptional regulator of PTS gene
D UFO1_2712 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D UFO1_0526 transcriptional repressor, CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D UFO1_1417 putative sigma54 specific transcriptional regulator with PAS/PAC sensor K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D UFO1_1174 putative sigma54 specific transcriptional regulator with PAS/PAC sensor K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D UFO1_3963 putative sigma54 specific transcriptional regulator with PAS/PAC sensor K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D UFO1_4703 putative sigma54 specific transcriptional regulator with PAS/PAC sensor K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D UFO1_4019 transcriptional regulator, DeoR family K05311 cggR; central glycolytic genes regulator
D UFO1_2403 Bifunctional protein pyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D UFO1_2421 transcriptional regulator, NrdR K07738 nrdR; transcriptional repressor NrdR
D UFO1_2524 Protein mraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0