+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Phaseolus vulgaris (common bean)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        PHAVU_002G104500g hypothetical protein	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        PHAVU_006G185800g hypothetical protein	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        PHAVU_009G230400g hypothetical protein	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        PHAVU_002G097400g hypothetical protein	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        PHAVU_011G010100g hypothetical protein	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        PHAVU_010G030200g hypothetical protein	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        PHAVU_006G135800g hypothetical protein	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        PHAVU_002G193600g hypothetical protein	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        PHAVU_009G256100g hypothetical protein	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
E        PHAVU_003G112600g hypothetical protein	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        PHAVU_004G166200g hypothetical protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        PHAVU_001G125200g hypothetical protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        PHAVU_005G029700g hypothetical protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        PHAVU_007G009900g hypothetical protein	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        PHAVU_007G066800g hypothetical protein	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        PHAVU_010G060300g hypothetical protein	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        PHAVU_007G263200g hypothetical protein	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        PHAVU_009G069200g hypothetical protein	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        PHAVU_004G138700g hypothetical protein	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        PHAVU_009G036800g hypothetical protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
E        PHAVU_002G153700g hypothetical protein	K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] 
E        PHAVU_011G206900g hypothetical protein	K16251 NRPE1; DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] 
E        PHAVU_009G087100g hypothetical protein	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        PHAVU_007G126700g hypothetical protein	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
C    Basal transcription factors
D      TFIIA
E        PHAVU_005G146700g hypothetical protein	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        PHAVU_005G159000g hypothetical protein	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        PHAVU_008G183300g hypothetical protein	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        PHAVU_001G130000g hypothetical protein	K03124 TFIIB; transcription initiation factor TFIIB 
E        PHAVU_007G251400g hypothetical protein	K03124 TFIIB; transcription initiation factor TFIIB 
E        PHAVU_002G028900g hypothetical protein	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        PHAVU_010G081500g hypothetical protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        PHAVU_006G062900g hypothetical protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        PHAVU_001G076800g hypothetical protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        PHAVU_002G127400g hypothetical protein	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        PHAVU_003G177400g hypothetical protein	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        PHAVU_001G026300g hypothetical protein	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        PHAVU_001G042300g hypothetical protein	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        PHAVU_009G087600g hypothetical protein	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        PHAVU_008G012100g hypothetical protein	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        PHAVU_006G049000g hypothetical protein	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        PHAVU_001G056500g hypothetical protein	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        PHAVU_001G056600g hypothetical protein	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        PHAVU_011G120200g hypothetical protein	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        PHAVU_008G241800g hypothetical protein	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        PHAVU_007G149100g hypothetical protein	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        PHAVU_008G203400g hypothetical protein	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        PHAVU_003G118200g hypothetical protein	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        PHAVU_008G002400g hypothetical protein	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        PHAVU_010G058500g hypothetical protein	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        PHAVU_010G130700g hypothetical protein	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        PHAVU_007G228800g hypothetical protein	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        PHAVU_007G215700g hypothetical protein	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        PHAVU_003G177500g hypothetical protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        PHAVU_009G200700g hypothetical protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        PHAVU_002G287100g hypothetical protein	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
E        PHAVU_002G155700g hypothetical protein	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        PHAVU_003G083500g hypothetical protein	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        PHAVU_006G143600g hypothetical protein	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        PHAVU_004G074500g hypothetical protein	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
E        PHAVU_009G013500g hypothetical protein	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        PHAVU_007G134900g hypothetical protein	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        PHAVU_001G121400g hypothetical protein	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        PHAVU_009G124300g hypothetical protein	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        PHAVU_002G227900g hypothetical protein	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        PHAVU_002G291500g hypothetical protein	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        PHAVU_004G095600g hypothetical protein	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        PHAVU_009G128900g hypothetical protein	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        PHAVU_002G322200g hypothetical protein	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        PHAVU_002G326800g hypothetical protein	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        PHAVU_004G152000g hypothetical protein	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        PHAVU_004G044600g hypothetical protein	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        PHAVU_007G1793000 hypothetical protein	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        PHAVU_010G143300g hypothetical protein	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        PHAVU_004G117800g hypothetical protein	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        PHAVU_003G161800g hypothetical protein	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        PHAVU_003G144800g hypothetical protein	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        PHAVU_003G131900g hypothetical protein	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        PHAVU_005G043700g hypothetical protein	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        PHAVU_002G266700g hypothetical protein	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
D      Middle
E        PHAVU_010G156700g hypothetical protein	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        PHAVU_003G069600g hypothetical protein	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        PHAVU_007G037700g hypothetical protein	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        PHAVU_007G063000g hypothetical protein	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        PHAVU_006G101900g hypothetical protein	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
D      CDK-module
E        PHAVU_002G275500g hypothetical protein	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        PHAVU_007G1431000 hypothetical protein	K15161 CCNC; cyclin-C 
E        PHAVU_008G132400g hypothetical protein	K15161 CCNC; cyclin-C 
E        PHAVU_001G269300g hypothetical protein	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        PHAVU_003G021100g hypothetical protein	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        PHAVU_003G028300g hypothetical protein	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        PHAVU_001G195400g hypothetical protein	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
E        PHAVU_002G127500g hypothetical protein	K27471 MED32; mediator of RNA polymerase II transcription subunit 32 
E        PHAVU_004G001700g hypothetical protein	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        PHAVU_006G154900g hypothetical protein	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        PHAVU_001G156000g hypothetical protein	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        PHAVU_002G108900g hypothetical protein	K08874 TRRAP; transformation/transcription domain-associated protein 
E        PHAVU_006G004100g hypothetical protein	K11314 TADA2A; transcriptional adapter 2-alpha 
E        PHAVU_006G140900g hypothetical protein	K11314 TADA2A; transcriptional adapter 2-alpha 
E        PHAVU_003G177400g hypothetical protein	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        PHAVU_001G026300g hypothetical protein	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        PHAVU_001G042300g hypothetical protein	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        PHAVU_009G087600g hypothetical protein	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        PHAVU_008G012100g hypothetical protein	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        PHAVU_006G049000g hypothetical protein	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        PHAVU_001G056500g hypothetical protein	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        PHAVU_001G056600g hypothetical protein	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        PHAVU_008G203400g hypothetical protein	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        PHAVU_003G118200g hypothetical protein	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        PHAVU_008G002400g hypothetical protein	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        PHAVU_010G130700g hypothetical protein	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        PHAVU_007G228800g hypothetical protein	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        PHAVU_006G070800g hypothetical protein	K11363 SGF11; SAGA-associated factor 11 
E        PHAVU_001G096400g hypothetical protein	K11364 SGF29; SAGA-associated factor 29 
E        PHAVU_008G199800g hypothetical protein	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        PHAVU_001G093800g hypothetical protein	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        PHAVU_003G171000g hypothetical protein	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        PHAVU_001G045600g hypothetical protein	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        PHAVU_007G009600g hypothetical protein	K12830 SF3B3; splicing factor 3B subunit 3 
E        PHAVU_001G200200g hypothetical protein	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        PHAVU_010G100100g hypothetical protein	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        PHAVU_003G124500g hypothetical protein	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        PHAVU_011G046200g hypothetical protein	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        PHAVU_009G127700g hypothetical protein	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        PHAVU_009G132800g hypothetical protein	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        PHAVU_009G008500g hypothetical protein	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        PHAVU_001G071900g hypothetical protein	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        PHAVU_009G166900g hypothetical protein	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        PHAVU_001G094300g hypothetical protein	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        PHAVU_003G210500g hypothetical protein	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        PHAVU_004G054400g hypothetical protein	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        PHAVU_010G044300g hypothetical protein	K11340 ACTL6A; actin-like protein 6A 
D      SWI/SNF complex
E        PHAVU_003G124500g hypothetical protein	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        PHAVU_002G300000g hypothetical protein	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        PHAVU_009G154400g hypothetical protein	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        PHAVU_003G045700g hypothetical protein	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        PHAVU_009G042900g hypothetical protein	K03145 TFIIS; transcription elongation factor S-II 
E        PHAVU_003G004200g hypothetical protein	K15171 SUPT4H1; transcription elongation factor SPT4 
E        PHAVU_001G068300g hypothetical protein	K15171 SUPT4H1; transcription elongation factor SPT4 
E        PHAVU_009G134600g hypothetical protein	K15172 SUPT5H; transcription elongation factor SPT5 
E        PHAVU_001G117200g hypothetical protein	K11292 SUPT6H; transcription elongation factor SPT6 
E        PHAVU_005G013600g hypothetical protein	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        PHAVU_007G053300g hypothetical protein	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        PHAVU_007G053400g hypothetical protein	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        PHAVU_001G186700g hypothetical protein	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        PHAVU_007G223200g hypothetical protein	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        PHAVU_004G126600g hypothetical protein	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        PHAVU_006G217100g hypothetical protein	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        PHAVU_011G216700g hypothetical protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        PHAVU_006G130200g hypothetical protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        PHAVU_007G273100g hypothetical protein	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        PHAVU_007G116900g hypothetical protein	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        PHAVU_006G088900g hypothetical protein	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        PHAVU_006G106000g hypothetical protein	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        PHAVU_002G293400g hypothetical protein	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        PHAVU_007G121400g hypothetical protein	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        PHAVU_007G127600g hypothetical protein	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        PHAVU_003G033800g hypothetical protein	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        PHAVU_008G229900g hypothetical protein	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        PHAVU_009G146300g hypothetical protein	K06100 SYMPK; symplekin 
E        PHAVU_010G000700g hypothetical protein	K06100 SYMPK; symplekin 
E        PHAVU_004G147300g hypothetical protein	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        PHAVU_001G007900g hypothetical protein	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        PHAVU_002G002400g hypothetical protein	K14845 RAI1; RAT1-interacting protein 
E        PHAVU_001G090200g hypothetical protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        PHAVU_002G262900g hypothetical protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        PHAVU_001G103000g hypothetical protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        PHAVU_010G130800g hypothetical protein	K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] 
E        PHAVU_003G260800g hypothetical protein	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        PHAVU_010G145300g hypothetical protein	K15174 PAF1; RNA polymerase II-associated factor 1 
E        PHAVU_002G042300g hypothetical protein	K15175 CDC73; parafibromin 
E        PHAVU_009G228100g hypothetical protein	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        PHAVU_009G192800g hypothetical protein	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        PHAVU_001G224300g hypothetical protein	K15178 RTF1; RNA polymerase-associated protein RTF1 
E        PHAVU_001G167200g hypothetical protein	K15178 RTF1; RNA polymerase-associated protein RTF1 
E        PHAVU_002G226300g hypothetical protein	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
D      Super elongation complex (SEC)
E        PHAVU_007G037100g hypothetical protein	K15186 EAF; ELL-associated factor 
E        PHAVU_005G049900g hypothetical protein	K15188 CCNT; cyclin T 
E        PHAVU_002G047100g hypothetical protein	K15188 CCNT; cyclin T 
E        PHAVU_007G054800g hypothetical protein	K15188 CCNT; cyclin T 
E        PHAVU_003G138600g hypothetical protein	K15188 CCNT; cyclin T 
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
E        PHAVU_005G049900g hypothetical protein	K15188 CCNT; cyclin T 
E        PHAVU_002G047100g hypothetical protein	K15188 CCNT; cyclin T 
E        PHAVU_007G054800g hypothetical protein	K15188 CCNT; cyclin T 
E        PHAVU_003G138600g hypothetical protein	K15188 CCNT; cyclin T 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        PHAVU_002G310900g hypothetical protein	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        PHAVU_009G2633000 hypothetical protein	K15191 LARP7; La-related protein 7 
E        PHAVU_006G164000g hypothetical protein	K15191 LARP7; La-related protein 7 
E        PHAVU_003G293900g hypothetical protein	K15191 LARP7; La-related protein 7 
E        PHAVU_005G049900g hypothetical protein	K15188 CCNT; cyclin T 
E        PHAVU_002G047100g hypothetical protein	K15188 CCNT; cyclin T 
E        PHAVU_007G054800g hypothetical protein	K15188 CCNT; cyclin T 
E        PHAVU_003G138600g hypothetical protein	K15188 CCNT; cyclin T 
D      DBIRD complex
D      Others
E        PHAVU_011G002900g hypothetical protein	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        PHAVU_009G201500g hypothetical protein	K21751 DR1; down-regulator of transcription 1 
E        PHAVU_003G179300g hypothetical protein	K21751 DR1; down-regulator of transcription 1 
E        PHAVU_011G196500g hypothetical protein	K21752 DRAP1; Dr1-associated corepressor 
E        PHAVU_008G204500g hypothetical protein	K21752 DRAP1; Dr1-associated corepressor 
E        PHAVU_005G014300g hypothetical protein	K21752 DRAP1; Dr1-associated corepressor 
E        PHAVU_002G139100g hypothetical protein	K15193 SPTY2D1; protein SPT2 
E        PHAVU_003G285300g hypothetical protein	K15193 SPTY2D1; protein SPT2 
E        PHAVU_002G226900g hypothetical protein	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        PHAVU_008G105400g hypothetical protein	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        PHAVU_008G019000g hypothetical protein	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        PHAVU_003G156800g hypothetical protein	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        PHAVU_005G040600g hypothetical protein	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        PHAVU_006G171200g hypothetical protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        PHAVU_008G223800g hypothetical protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        PHAVU_002G135200g hypothetical protein	K17498 SPN1; transcription factor SPN1 
E        PHAVU_009G172400g hypothetical protein	K17498 SPN1; transcription factor SPN1 
E        PHAVU_009G172500g hypothetical protein	K17498 SPN1; transcription factor SPN1 
E        PHAVU_003G039700g hypothetical protein	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        PHAVU_007G265900g hypothetical protein	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        PHAVU_007G201600g hypothetical protein	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        PHAVU_002G194600g hypothetical protein	K12412 MCM1; pheromone receptor transcription factor 
E        PHAVU_003G116600g hypothetical protein	K24104 GPN; GPN-loop GTPase 
E        PHAVU_006G048300g hypothetical protein	K24104 GPN; GPN-loop GTPase 
E        PHAVU_009G072100g hypothetical protein	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        PHAVU_011G070100g hypothetical protein	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        PHAVU_004G175000g hypothetical protein	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        PHAVU_006G053600g hypothetical protein	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        PHAVU_004G063100g hypothetical protein	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
E        PHAVU_008G020000g hypothetical protein	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        PHAVU_007G071300g hypothetical protein	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        PHAVU_011G006800g hypothetical protein	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        PHAVU_003G132000g hypothetical protein	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        PHAVU_002G0404001 hypothetical protein	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        PHAVU_002G0404000 hypothetical protein	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        PHAVU_008G021700g hypothetical protein	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        PHAVU_010G127200g hypothetical protein	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        PHAVU_006G182200g hypothetical protein	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        PHAVU_010G020200g hypothetical protein	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        PHAVU_001G230900g hypothetical protein	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        PHAVU_008G101000g hypothetical protein	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        PHAVU_004G166200g hypothetical protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        PHAVU_001G125200g hypothetical protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        PHAVU_005G029700g hypothetical protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        PHAVU_007G009900g hypothetical protein	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        PHAVU_007G066800g hypothetical protein	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        PHAVU_010G060300g hypothetical protein	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        PHAVU_007G263200g hypothetical protein	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        PHAVU_009G069200g hypothetical protein	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        PHAVU_004G138700g hypothetical protein	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        PHAVU_009G036800g hypothetical protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        PHAVU_008G270400g hypothetical protein	K09191 GTF3A; general transcription factor IIIA 
E        PHAVU_005G025300g hypothetical protein	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        PHAVU_010G081500g hypothetical protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        PHAVU_006G062900g hypothetical protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        PHAVU_001G076800g hypothetical protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        PHAVU_001G053500g hypothetical protein	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        PHAVU_002G066000g hypothetical protein	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        PHAVU_002G039700g hypothetical protein	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        PHAVU_011G0114000 hypothetical protein	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        PHAVU_007G2346001 hypothetical protein	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        PHAVU_011G176600g hypothetical protein	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        PHAVU_007G229800g hypothetical protein	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        PHAVU_011G031000g hypothetical protein	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        PHAVU_002G1131001 hypothetical protein	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        PHAVU_002G1131000 hypothetical protein	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        PHAVU_005G083100g hypothetical protein	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        PHAVU_002G1131001 hypothetical protein	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        PHAVU_002G1131000 hypothetical protein	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        PHAVU_011G031000g hypothetical protein	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        PHAVU_003G168700g hypothetical protein	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        PHAVU_003G154500g hypothetical protein	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
D      Others
E        PHAVU_007G035700g hypothetical protein	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        PHAVU_007G255400g hypothetical protein	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        PHAVU_011G201300g hypothetical protein	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        PHAVU_006G053600g hypothetical protein	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        PHAVU_004G063100g hypothetical protein	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
E        PHAVU_008G020000g hypothetical protein	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        PHAVU_009G236700g hypothetical protein	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        PHAVU_001G175600g hypothetical protein	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        PHAVU_004G166200g hypothetical protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        PHAVU_001G125200g hypothetical protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        PHAVU_005G029700g hypothetical protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        PHAVU_007G009900g hypothetical protein	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        PHAVU_007G066800g hypothetical protein	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        PHAVU_010G060300g hypothetical protein	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        PHAVU_007G263200g hypothetical protein	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        PHAVU_009G069200g hypothetical protein	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        PHAVU_004G138700g hypothetical protein	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        PHAVU_009G036800g hypothetical protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        PHAVU_010G081500g hypothetical protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        PHAVU_006G062900g hypothetical protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        PHAVU_001G076800g hypothetical protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
E        PHAVU_002G296700g hypothetical protein	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        PHAVU_010G020100g hypothetical protein	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        PHAVU_002G021500g hypothetical protein	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        PHAVU_003G004200g hypothetical protein	K15171 SUPT4H1; transcription elongation factor SPT4 
E        PHAVU_001G068300g hypothetical protein	K15171 SUPT4H1; transcription elongation factor SPT4 
E        PHAVU_009G134600g hypothetical protein	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        PHAVU_006G162200g hypothetical protein	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        PHAVU_003G101700g hypothetical protein	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
E        PhvuCp56 rpoA; RNA polymerase alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        PhvuCp22 rpoB; RNA polymerase beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
E        PhvuCp23 rpoC1; RNA polymerase beta' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        PhvuCp24 rpoC2; RNA polymerase beta'' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
D      Sigma factors
E        PHAVU_011G016400g hypothetical protein	K03086 rpoD; RNA polymerase primary sigma factor 
E        PHAVU_009G1376001 hypothetical protein	K03093 sigI; RNA polymerase sigma-I factor 
E        PHAVU_001G059800g hypothetical protein	K03093 sigI; RNA polymerase sigma-I factor 
E        PHAVU_001G061400g hypothetical protein	K03093 sigI; RNA polymerase sigma-I factor 
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        PHAVU_001G130000g hypothetical protein	K03124 TFIIB; transcription initiation factor TFIIB 
E        PHAVU_007G251400g hypothetical protein	K03124 TFIIB; transcription initiation factor TFIIB 
E        PHAVU_002G028900g hypothetical protein	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        PHAVU_003G177500g hypothetical protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        PHAVU_009G200700g hypothetical protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
#<hr>
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#Last updated: April 9, 2024