+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Phaseolus vulgaris (common bean)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        137810926 DNA-directed RNA polymerase II subunit RPB1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        137821917 DNA-directed RNA polymerase II subunit RPB2-like	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        137832591 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        137810874 DNA-directed RNA polymerases II, IV and V subunit 3-like	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        137825302 DNA-directed RNA polymerases II, IV and V subunit 11	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        137818665 DNA-directed RNA polymerase II subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        137832108 DNA-directed RNA polymerases IV and V subunit 4-like	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        137811720 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        137807003 DNA-directed RNA polymerases II, IV and V subunit 9A-like	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
E        137821813 DNA-directed RNA polymerases II, IV and V subunit 9A	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        137813979 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        137834812 DNA-directed RNA polymerase V subunit 5C	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        137838099 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        137827876 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        137828858 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        137819043 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        137821011 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        137830689 DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        137837827 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        137821251 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
E        137811382 DNA-directed RNA polymerase IV subunit 1 isoform X1	K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] 
E        137817395 DNA-directed RNA polymerase V subunit 1	K16251 NRPE1; DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] 
E        137820414 DNA-directed RNA polymerases IV and V subunit 2-like	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        137817285 DNA-directed RNA polymerase V subunit 7-like	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
C    Basal transcription factors
D      TFIIA
E        137817028 transcription initiation factor IIA large subunit-like	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        137835848 transcription initiation factor IIA large subunit-like	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        137824418 transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        137810209 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        137814023 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        137830558 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        137813565 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        137818419 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        137831420 TATA-box-binding protein isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        137811137 transcription initiation factor TFIID subunit 1 isoform X1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        137807652 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        137816540 transcription initiation factor TFIID subunit 4b-like isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        137816692 transcription initiation factor TFIID subunit 5-like isoform X1	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        137820907 transcription initiation factor TFIID subunit 5-like	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        137823907 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        137831275 transcription initiation factor TFIID subunit 6-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        137813376 transcription initiation factor TFIID subunit 7-like isoform X1	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        137813377 transcription initiation factor TFIID subunit 7-like isoform X1	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        137824511 transcription initiation factor TFIID subunit 8-like	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        137826586 transcription initiation factor TFIID subunit 8-like	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        137828805 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        137807045 transcription initiation factor TFIID subunit 9-like	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        137824343 transcription initiation factor TFIID subunit 9-like	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        137823849 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        137818686 transcription initiation factor TFIID subunit 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        137818244 transcription initiation factor TFIID subunit 12b	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        137830341 transcription initiation factor TFIID subunit 12 isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        137830215 transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        137807653 uncharacterized protein isoform X1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        137820083 transcription factor efuD-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        137811398 uncharacterized protein	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
E        137812612 uncharacterized protein	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        137806755 transcription initiation factor IIF subunit alpha-like	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        137832173 transcription initiation factor IIF subunit alpha-like	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        137820222 transcription initiation factor IIF subunit beta	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
E        137837300 uncharacterized protein	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        137828415 general transcription and DNA repair factor IIH subunit TFB1-1-like	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        137813956 general transcription factor IIH subunit 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        137820163 general transcription and DNA repair factor IIH subunit TFB4 isoform X1	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        137812029 general transcription and DNA repair factor IIH subunit TFB2	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        137812660 general transcription and DNA repair factor IIH helicase/translocase subunit XPB1 isoform X1	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        137837353 general transcription and DNA repair factor IIH helicase subunit XPD	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        137812966 general transcription and DNA repair factor IIH subunit TFB5-like	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        137822074 general transcription and DNA repair factor IIH subunit TFB5-like	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        137837961 cyclin-dependent kinase D-3-like	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        137837049 uncharacterized protein	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        137829819 LOW QUALITY PROTEIN: cyclin-H1-1	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        137819319 mediator of RNA polymerase II transcription subunit 6 isoform X1	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        137837649 mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        137807500 mediator of RNA polymerase II transcription subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        137821225 mediator of RNA polymerase II transcription subunit 18 isoform X1	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        137807181 mediator of RNA polymerase II transcription subunit 20a-like	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        137834937 mediator of RNA polymerase II transcription subunit 22b-like	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        137812432 mediator of RNA polymerase II transcription subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
D      Middle
E        137818137 mediator of RNA polymerase II transcription subunit 7a-like	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        137806613 mediator of RNA polymerase II transcription subunit 10b-like	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        137827741 mediator of RNA polymerase II transcription subunit 21	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        137830756 mediator of RNA polymerase II transcription subunit 31	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        137831805 mediator of RNA polymerase II transcription subunit 14	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
D      CDK-module
E        137812509 cyclin-dependent kinase E-1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        137824214 cyclin-C1-2-like isoform X1	K15161 CCNC; cyclin-C 
E        137828665 cyclin-C1-1-like isoform X1	K15161 CCNC; cyclin-C 
E        137834953 cyclin-C1-2-like isoform X1	K15161 CCNC; cyclin-C 
E        137815322 mediator of RNA polymerase II transcription subunit 13 isoform X1	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        137806185 mediator of RNA polymerase II transcription subunit 23	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        137806254 mediator of RNA polymerase II transcription subunit 25	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        137814632 mediator of RNA polymerase II transcription subunit 27	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
E        137811139 mediator of RNA polymerase II transcription subunit 32	K27471 MED32; mediator of RNA polymerase II transcription subunit 32 
E        137823629 mediator of RNA polymerase II transcription subunit 33A-like	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        137832281 mediator of RNA polymerase II transcription subunit 33A	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        137836645 mediator of RNA polymerase II transcription subunit 33B-like isoform X1	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        137814258 histone acetyltransferase GCN5	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        137810968 uncharacterized protein isoform X1	K08874 TRRAP; transformation/transcription domain-associated protein 
E        137827867 transcriptional adapter ADA2a	K11314 TADA2A; transcriptional adapter 2-alpha 
E        137832149 transcriptional adapter ADA2b	K11314 TADA2A; transcriptional adapter 2-alpha 
E        137807652 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        137816540 transcription initiation factor TFIID subunit 4b-like isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        137816692 transcription initiation factor TFIID subunit 5-like isoform X1	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        137820907 transcription initiation factor TFIID subunit 5-like	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        137823907 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        137831275 transcription initiation factor TFIID subunit 6-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        137813376 transcription initiation factor TFIID subunit 7-like isoform X1	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        137813377 transcription initiation factor TFIID subunit 7-like isoform X1	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        137807045 transcription initiation factor TFIID subunit 9-like	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        137824343 transcription initiation factor TFIID subunit 9-like	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        137823849 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        137818244 transcription initiation factor TFIID subunit 12b	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        137830341 transcription initiation factor TFIID subunit 12 isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        137831497 SAGA-associated factor 11 isoform X1	K11363 ATXN7L; SAGA-associated factor 11 
E        137813720 SAGA-associated factor 29 homolog A-like isoform X1	K11364 SGF29; SAGA-associated factor 29 
E        137827085 protein CHROMATIN REMODELING 5	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        137813696 transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        137807591 ubiquitin C-terminal hydrolase 22-like	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        137817740 ubiquitin C-terminal hydrolase 22-like	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        137817752 ubiquitin C-terminal hydrolase 22-like isoform X1	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        137814678 DNA damage-binding protein 1b	K12830 SF3B3; splicing factor 3B subunit 3 
E        137827874 spliceosome-associated protein 130 A	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        137818944 ATP-dependent helicase BRM-like isoform X1	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        137807105 chromatin structure-remodeling complex protein BSH	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        137813519 SWI/SNF complex subunit SWI3C-like	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        137820379 SWI/SNF complex subunit SWI3A isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        137820415 SWI/SNF complex subunit SWI3C isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        137820785 SWI/SNF complex subunit SWI3B	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        137824965 SWI/SNF complex subunit SWI3D	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        137807964 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        137813685 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        137822556 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        137837118 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        137818524 actin-related protein 4	K11340 ACTL6A; actin-like protein 6A 
D      SWI/SNF complex
E        137807105 chromatin structure-remodeling complex protein BSH	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        137812746 RNA polymerase II transcriptional coactivator KELP-like	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        137821482 RNA polymerase II transcriptional coactivator KIWI-like isoform X1	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        137806405 protein SHORT ROOT IN SALT MEDIUM 1 isoform X1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        137820147 transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        137806023 transcription elongation factor SPT4 homolog 2	K15171 SUPT4H1; transcription elongation factor SPT4 
E        137813486 transcription elongation factor SPT4 homolog 2-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        137820068 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        137813883 transcription elongation factor SPT6 homolog	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        137814539 polyadenylation and cleavage factor homolog 4-like isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        137827991 polyadenylation and cleavage factor homolog 4-like	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        137829715 polyadenylation and cleavage factor homolog 4-like	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        137830287 polyadenylation and cleavage factor homolog 4-like isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        137837730 cleavage and polyadenylation specificity factor subunit 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        137832901 cleavage and polyadenylation specificity factor subunit 3-I	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        137824883 uncharacterized protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        137832045 30-kDa cleavage and polyadenylation specificity factor 30	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        137806298 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        137812685 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        137817164 serine/threonine-protein phosphatase PP1 isozyme 3-like isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        137817476 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        137824290 serine/threonine-protein phosphatase PP1 isozyme 4	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        137827495 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        137831665 serine/threonine-protein phosphatase PP1 isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        137831833 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        137818143 uncharacterized protein	K06100 SYMPK; symplekin 
E        137821614 uncharacterized protein isoform X1	K06100 SYMPK; symplekin 
E        137837909 uncharacterized protein	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        137816347 5'-3' exoribonuclease 3 isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        137809954 NAD-capped RNA hydrolase DXO1	K14845 RAI1; RAT1-interacting protein 
E        137812393 uncharacterized protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        137813658 uncharacterized protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        137813774 uncharacterized protein isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        137819761 uncharacterized protein isoform X1	K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] 
E        137808454 peptidyl-prolyl cis-trans isomerase Pin1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        137818239 protein PAF1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        137810350 protein CDC73 homolog	K15175 CDC73; parafibromin 
E        137820044 protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        137820167 protein LEO1 homolog	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        137812013 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
E        137814348 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
E        137816250 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
D      Super elongation complex (SEC)
E        137828158 uncharacterized protein	K15186 EAF; ELL-associated factor 
E        137807293 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        137810397 cyclin-T1-4-like isoform X1	K15188 CCNT; cyclin T 
E        137829874 cyclin-T1-5-like	K15188 CCNT; cyclin T 
E        137834985 cyclin-T1-3-like	K15188 CCNT; cyclin T 
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
E        137807293 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        137810397 cyclin-T1-4-like isoform X1	K15188 CCNT; cyclin T 
E        137829874 cyclin-T1-5-like	K15188 CCNT; cyclin T 
E        137834985 cyclin-T1-3-like	K15188 CCNT; cyclin T 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        137812853 probable RNA methyltransferase At5g51130	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        137808760 la-related protein 6C isoform X1	K15191 LARP7; La-related protein 7 
E        137820425 la-related protein 6B	K15191 LARP7; La-related protein 7 
E        137832370 la-related protein 6A isoform X1	K15191 LARP7; La-related protein 7 
E        137807293 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        137810397 cyclin-T1-4-like isoform X1	K15188 CCNT; cyclin T 
E        137829874 cyclin-T1-5-like	K15188 CCNT; cyclin T 
E        137834985 cyclin-T1-3-like	K15188 CCNT; cyclin T 
D      DBIRD complex
D      Others
E        137818974 TATA-binding protein-associated factor BTAF1	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        137807668 protein Dr1 homolog isoform X1	K21751 DR1; down-regulator of transcription 1 
E        137823203 protein Dr1 homolog	K21751 DR1; down-regulator of transcription 1 
E        137818150 uncharacterized protein	K21752 DRAP1; Dr1-associated corepressor 
E        137826264 uncharacterized protein isoform X1	K21752 DRAP1; Dr1-associated corepressor 
E        137834700 uncharacterized protein isoform X1	K21752 DRAP1; Dr1-associated corepressor 
E        137808682 uncharacterized protein	K15193 SPTY2D1; protein SPT2 
E        137811275 uncharacterized protein isoform X1	K15193 SPTY2D1; protein SPT2 
E        137812019 RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        137823572 RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        137807449 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        137823811 RNA polymerase II C-terminal domain phosphatase-like 3 isoform X1	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        137834908 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        137827257 uncharacterized protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        137832447 uncharacterized protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        137811213 protein IWS1 homolog 1-like	K17498 SPN1; transcription factor SPN1 
E        137821652 protein IWS1 homolog 1-like	K17498 SPN1; transcription factor SPN1 
E        137806350 transcriptional elongation regulator MINIYO	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        137830724 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        137830083 uncharacterized protein isoform X1	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        137807031 GPN-loop GTPase QQT2	K24104 GPN; GPN-loop GTPase 
E        137822042 GPN-loop GTPase QQT1 isoform X1	K24104 GPN; GPN-loop GTPase 
E        137831268 uncharacterized protein	K24104 GPN; GPN-loop GTPase 
E        137825763 RNA-directed DNA methylation 4	K28237 SLC7A6OS; RNA polymerase II nuclear localization protein 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        137819503 DNA-directed RNA polymerase III subunit 1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        137838172 DNA-directed RNA polymerase III subunit 2	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        137831315 uncharacterized protein	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        137825535 uncharacterized protein	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
E        137836417 uncharacterized protein	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        137828381 uncharacterized protein	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        137807182 DNA-directed RNA polymerase III subunit RPC4 isoform X1	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        137823606 DNA-directed RNA polymerase III subunit rpc4 isoform X1	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        137810331 uncharacterized protein	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        137818951 uncharacterized protein	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        137826260 uncharacterized protein	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        137832556 uncharacterized protein	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        137819349 uncharacterized protein	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        137819474 uncharacterized protein	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        137814855 uncharacterized protein	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        137814967 uncharacterized protein isoform X1	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        137826524 uncharacterized protein	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        137813979 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        137834812 DNA-directed RNA polymerase V subunit 5C	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        137838099 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        137827876 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        137828858 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        137819043 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        137821011 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        137830689 DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        137837827 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        137821251 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        137827271 transcription factor IIIA-like	K09191 GTF3A; general transcription factor IIIA 
E        137834783 transcription factor IIIA-like isoform X1	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        137813565 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        137818419 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        137831420 TATA-box-binding protein isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        137810600 plant-specific TFIIB-related protein PTF2	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        137813815 transcription factor IIIB 60 kDa subunit-like isoform X1	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        137810321 uncharacterized protein isoform X1	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        137830405 uncharacterized protein	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        137827213 uncharacterized protein	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        137830349 uncharacterized protein isoform X1	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        137822888 uncharacterized protein	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        137811010 uncharacterized protein isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        137835289 uncharacterized protein isoform X1	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        137811010 uncharacterized protein isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        137822888 uncharacterized protein	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        137807568 uncharacterized protein isoform X1	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        137807425 snRNA-activating protein complex subunit	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
D      Others
E        137827833 uncharacterized protein	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        137830590 DNA-directed RNA polymerase I subunit 1	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        137816062 DNA-directed RNA polymerase I subunit 2	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        137831315 uncharacterized protein	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        137825535 uncharacterized protein	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
E        137836417 uncharacterized protein	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        137821157 DNA-directed RNA polymerase I subunit rpa49	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        137814439 uncharacterized protein	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        137813979 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        137834812 DNA-directed RNA polymerase V subunit 5C	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        137838099 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        137827876 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        137828858 DNA-directed RNA polymerases II, IV and V subunit 6A-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        137819043 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        137821011 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        137830689 DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        137837827 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        137821251 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        137813565 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        137818419 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        137831420 TATA-box-binding protein isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
E        137812718 high mobility group B protein 6	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        137818101 uncharacterized protein	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        137810140 upstream activation factor subunit UAF30-like	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        137806023 transcription elongation factor SPT4 homolog 2	K15171 SUPT4H1; transcription elongation factor SPT4 
E        137813486 transcription elongation factor SPT4 homolog 2-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        137820068 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        137806917 ISWI chromatin-remodeling complex ATPase CHR11-like	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        137832354 ISWI chromatin-remodeling complex ATPase CHR11	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
E        4961805 rpoA; RNA polymerase alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        4961795 rpoB; RNA polymerase beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
E        137822368 DNA-directed RNA polymerase subunit beta'-like	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        4961803 rpoC2; RNA polymerase beta'' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        4961811 rpoC1; RNA polymerase beta' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
D      Sigma factors
E        137811242 RNA polymerase sigma factor sigA	K03086 rpoD; RNA polymerase primary sigma factor 
E        137813411 RNA polymerase sigma factor sigC isoform X1	K03093 sigI; RNA polymerase sigma-I factor 
E        137813429 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like	K03093 sigI; RNA polymerase sigma-I factor 
E        137821773 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial isoform X1	K03093 sigI; RNA polymerase sigma-I factor 
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        137810209 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        137814023 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        137830558 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        137807653 uncharacterized protein isoform X1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        137820083 transcription factor efuD-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
#<hr>
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#Last updated: April 17, 2025