+D GENES KO
#
KEGG Orthology (KO) - Polynucleobacter yangtzensis
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:pyt00010]
D PKF023_10910 pgi1; glucose-6-phosphate isomerase 1 K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PKF023_12560 fbp; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PKF023_16590 cbbA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PKF023_10530 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PKF023_02370 hexC; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PKF023_16610 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D PKF023_18020 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PKF023_18950 gpmB; phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PKF023_09780 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PKF023_16600 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PKF023_05800 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D PKF023_07720 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PKF023_07730 pdhB; acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PKF023_07740 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_08720 odhL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_11040 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PKF023_10920 pgm; phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PKF023_19130 pckG; phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
C 00020 Citrate cycle (TCA cycle) [PATH:pyt00020]
D PKF023_08010 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D PKF023_08970 citryl-CoA lyase K01647 CS; citrate synthase [EC:2.3.3.1]
D PKF023_09750 acnB; aconitate hydratase B K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PKF023_04140 icd2; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PKF023_08700 sucA; 2-oxoglutarate dehydrogenase subunit E1 K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D PKF023_08710 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D PKF023_07740 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_08720 odhL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_16720 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PKF023_16730 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PKF023_07980 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PKF023_07990 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PKF023_07960 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PKF023_07970 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D PKF023_11050 fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D PKF023_07940 mdH; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PKF023_19130 pckG; phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D PKF023_07720 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PKF023_07730 pdhB; acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:pyt00030]
D PKF023_10910 pgi1; glucose-6-phosphate isomerase 1 K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PKF023_01530 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D PKF023_02360 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PKF023_07530 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D PKF023_07540 rpiA; ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D PKF023_10920 pgm; phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PKF023_17740 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PKF023_04320 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D PKF023_01840 aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D PKF023_17430 hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D PKF023_16590 cbbA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PKF023_12560 fbp; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:pyt00040]
D PKF023_14330 udg2; UDP-glucose 6-dehydrogenase 2 K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PKF023_15670 galU-1; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PKF023_03530 xylose isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D PKF023_01530 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:pyt00051]
D PKF023_03180 xanB; xanthan biosynthesis protein XanB K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D PKF023_10920 pgm; phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PKF023_03190 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D PKF023_03200 wbcJ; GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D PKF023_12560 fbp; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PKF023_16590 cbbA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PKF023_10530 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PKF023_18070 PTS mannose transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
C 00052 Galactose metabolism [PATH:pyt00052]
D PKF023_03160 galE_1; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PKF023_03340 galE_2; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PKF023_15670 galU-1; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PKF023_10920 pgm; phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00053 Ascorbate and aldarate metabolism [PATH:pyt00053]
D PKF023_14330 udg2; UDP-glucose 6-dehydrogenase 2 K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PKF023_03530 xylose isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
C 00500 Starch and sucrose metabolism [PATH:pyt00500]
D PKF023_15670 galU-1; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PKF023_10920 pgm; phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PKF023_10910 pgi1; glucose-6-phosphate isomerase 1 K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pyt00520]
D PKF023_04590 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D PKF023_18440 glmS-2; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PKF023_10130 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D PKF023_18450 glmU; bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D PKF023_17360 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D PKF023_14460 gph-1; phosphoglycolate phosphatase, bacterial K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D PKF023_17250 aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D PKF023_17260 mannose-1-phosphate guanylyltransferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D PKF023_01010 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PKF023_03030 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PKF023_03280 wbjB; UDP-glucose 4-epimerase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D PKF023_04800 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D PKF023_04770 hypothetical protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D PKF023_02710 NAD-dependent dehydratase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D PKF023_10920 pgm; phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PKF023_15670 galU-1; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PKF023_14330 udg2; UDP-glucose 6-dehydrogenase 2 K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PKF023_03160 galE_1; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PKF023_03340 galE_2; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PKF023_18070 PTS mannose transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D PKF023_10910 pgi1; glucose-6-phosphate isomerase 1 K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PKF023_03180 xanB; xanthan biosynthesis protein XanB K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D PKF023_03190 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D PKF023_03200 wbcJ; GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D PKF023_15740 CDP-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
C 00620 Pyruvate metabolism [PATH:pyt00620]
D PKF023_11040 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PKF023_07720 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PKF023_07730 pdhB; acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PKF023_07740 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_08720 odhL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_05410 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D PKF023_16600 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PKF023_08900 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PKF023_02190 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PKF023_02180 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PKF023_08120 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PKF023_06520 lldD; alpha-hydroxy-acid oxidizing enzyme K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D PKF023_08530 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D PKF023_09480 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D PKF023_00280 MBL fold hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D PKF023_10240 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D PKF023_04320 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D PKF023_02330 maeB; malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D PKF023_07940 mdH; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PKF023_11050 fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D PKF023_19130 pckG; phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D PKF023_05800 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D PKF023_07420 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D PKF023_09610 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PKF023_10580 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pyt00630]
D PKF023_04950 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D PKF023_11040 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PKF023_07420 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D PKF023_07940 mdH; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PKF023_08010 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D PKF023_08970 citryl-CoA lyase K01647 CS; citrate synthase [EC:2.3.3.1]
D PKF023_09750 acnB; aconitate hydratase B K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PKF023_09610 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PKF023_09580 phbB-1; beta-ketoacyl-ACP reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D PKF023_09470 pccA; acetyl/propionyl-CoA carboxylase subunit alpha K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D PKF023_09460 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D PKF023_09440 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PKF023_16280 glcD; glycolate oxidase K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D PKF023_16290 glcE; glycolate oxidase subunit GlcE K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14]
D PKF023_16300 glcF; glycolate oxidase iron-sulfur subunit K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D PKF023_04320 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D PKF023_04390 haloacid dehalogenase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D PKF023_13180 serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D PKF023_02910 glyA1; serine hydroxymethyltransferase 1 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PKF023_07740 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_08720 odhL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_00270 gcvH2; glycine cleavage system H protein 2 K02437 gcvH; glycine cleavage system H protein
D PKF023_09830 hyi; hydroxypyruvate isomerase K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22]
D PKF023_17430 hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D PKF023_13560 ttdA; L(+)-tartrate dehydratase subunit alpha K03779 ttdA; L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32]
D PKF023_13550 ttdB; L+-tartrate dehydratase subunit beta K03780 ttdB; L(+)-tartrate dehydratase beta subunit [EC:4.2.1.32]
D PKF023_07070 ttuC; tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D PKF023_10300 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D PKF023_06150 fdhA; formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D PKF023_10990 formate dehydrogenase subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D PKF023_11000 NADH-quinone oxidoreductase subunit F K22515 fdwB; formate dehydrogenase beta subunit [EC:1.17.1.9]
D PKF023_06160 fdhB; formate dehydrogenase iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D PKF023_06180 fdhC; formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma
D PKF023_11140 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D PKF023_12860 oxc; oxalyl-CoA decarboxylase K01577 oxc; oxalyl-CoA decarboxylase [EC:4.1.1.8]
D PKF023_12830 frc_1; formyl-CoA:oxalate CoA-transferase K07749 frc; formyl-CoA transferase [EC:2.8.3.16]
D PKF023_12850 frc_2; formyl-CoA:oxalate CoA-transferase K07749 frc; formyl-CoA transferase [EC:2.8.3.16]
C 00640 Propanoate metabolism [PATH:pyt00640]
D PKF023_11040 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PKF023_10210 prpE; propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D PKF023_05410 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D PKF023_07740 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_08720 odhL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_18370 alcohol dehydrogenase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D PKF023_01570 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PKF023_08900 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PKF023_02190 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PKF023_02180 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PKF023_08120 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PKF023_12940 hypothetical protein K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9]
D PKF023_11230 aspartate aminotransferase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D PKF023_09470 pccA; acetyl/propionyl-CoA carboxylase subunit alpha K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D PKF023_09460 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D PKF023_09440 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PKF023_16730 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PKF023_16720 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PKF023_10350 mmsA; methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PKF023_09750 acnB; aconitate hydratase B K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
C 00650 Butanoate metabolism [PATH:pyt00650]
D PKF023_09610 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PKF023_07880 hbdA; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D PKF023_14660 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D PKF023_09110 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D PKF023_01570 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PKF023_09570 phbC; poly-beta-hydroxybutyrate polymerase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D PKF023_05000 phaZ; esterase K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
D PKF023_09580 phbB-1; beta-ketoacyl-ACP reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D PKF023_07070 ttuC; tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D PKF023_10300 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D PKF023_07980 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PKF023_07990 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PKF023_07960 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PKF023_07970 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D PKF023_02730 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PKF023_13810 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D PKF023_08550 succinyl-CoA--3-ketoacid-CoA transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D PKF023_08560 CoA-transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D PKF023_06410 bdhA; 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D PKF023_10630 ilvB; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PKF023_10620 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:pyt00660]
D PKF023_10630 ilvB; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PKF023_10620 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PKF023_06250 CoA transferase K18289 ict-P; itaconate CoA-transferase [EC:2.8.3.- 2.8.3.22]
D PKF023_16730 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PKF023_16720 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PKF023_08020 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PKF023_08040 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PKF023_08050 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:pyt00562]
D PKF023_08840 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D PKF023_10350 mmsA; methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PKF023_10530 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:pyt00190]
D PKF023_10510 nuoA; NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D PKF023_10500 nuoB1; NADH-quinone oxidoreductase subunit B 1 K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D PKF023_10490 nuoC; NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D PKF023_10480 nuoD; NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D PKF023_10470 nuoE; NADH-quinone oxidoreductase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D PKF023_10460 nuoF; NADH-quinone oxidoreductase subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D PKF023_10450 NADH-quinone oxidoreductase K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D PKF023_10440 nuoH; NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D PKF023_10430 nuoI; NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D PKF023_10420 nuoJ; NADH dehydrogenase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D PKF023_10410 nuoK; NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D PKF023_10400 nuoL; NADH dehydrogenase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D PKF023_10390 nuoM; NADH dehydrogenase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D PKF023_10380 nuoN; NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D PKF023_07980 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PKF023_07990 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PKF023_07960 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PKF023_07970 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D PKF023_01300 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D PKF023_01310 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D PKF023_01320 petC; cytochrome c K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D PKF023_17850 ctaB; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D PKF023_17900 coxC; cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D PKF023_17930 coxA; cytochrome c oxidase subunit 1 K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D PKF023_17940 hypothetical protein K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D PKF023_17920 cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D PKF023_17860 cytochrome c oxidase subunit I K02259 COX15; heme a synthase [EC:1.17.99.9]
D PKF023_14840 cytochrome c oxidase, cbb3-type subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D PKF023_14830 peptidase S41 K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D PKF023_14820 Cbb3-type cytochrome c oxidase subunit K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D PKF023_00340 cytochrome c551 K08738 CYC; cytochrome c
D PKF023_00210 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PKF023_00230 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PKF023_00220 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PKF023_00200 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D PKF023_00240 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PKF023_00170 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PKF023_00190 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PKF023_00180 atpE; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D PKF023_12380 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D PKF023_12110 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D PKF023_12120 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:pyt00710]
D PKF023_16610 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D PKF023_02370 hexC; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PKF023_16590 cbbA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PKF023_12560 fbp; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PKF023_02360 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PKF023_07540 rpiA; ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D PKF023_10530 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PKF023_01530 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D PKF023_07530 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D PKF023_02330 maeB; malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D PKF023_07940 mdH; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:pyt00720]
D PKF023_05800 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D PKF023_07940 mdH; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PKF023_11050 fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D PKF023_07980 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PKF023_07990 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PKF023_07960 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PKF023_07970 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D PKF023_16720 sucD; succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PKF023_16730 sucC; succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PKF023_09610 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PKF023_04140 icd2; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PKF023_09750 acnB; aconitate hydratase B K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PKF023_08900 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PKF023_02190 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PKF023_02180 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PKF023_08120 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PKF023_11790 acyl-CoA dehydrogenase K09709 meh; 3-methylfumaryl-CoA hydratase [EC:4.2.1.153]
D PKF023_09440 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PKF023_07690 folD; bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D PKF023_18540 metF; methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D PKF023_05410 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D PKF023_11040 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:pyt00680]
D PKF023_06150 fdhA; formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D PKF023_10990 formate dehydrogenase subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D PKF023_11000 NADH-quinone oxidoreductase subunit F K22515 fdwB; formate dehydrogenase beta subunit [EC:1.17.1.9]
D PKF023_06160 fdhB; formate dehydrogenase iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D PKF023_06180 fdhC; formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma
D PKF023_02910 glyA1; serine hydroxymethyltransferase 1 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PKF023_13180 serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D PKF023_17430 hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D PKF023_09780 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PKF023_07940 mdH; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PKF023_16590 cbbA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PKF023_12560 fbp; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PKF023_05410 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D PKF023_11040 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PKF023_05800 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D PKF023_18020 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PKF023_18950 gpmB; phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PKF023_14420 serC-1; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D PKF023_09620 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:pyt00910]
D PKF023_09160 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D PKF023_13330 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D PKF023_00900 gltB; glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D PKF023_00910 gltD; glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D PKF023_18830 yadF; carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:pyt00920]
D PKF023_05360 hypothetical protein K15554 ssuC; sulfonate transport system permease protein
D PKF023_05370 nitrate ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D PKF023_05230 formate dehydrogenase K21307 soeA; sulfite dehydrogenase (quinone) subunit SoeA [EC:1.8.5.6]
D PKF023_05220 ferredoxin K21308 soeB; sulfite dehydrogenase (quinone) subunit SoeB
D PKF023_05210 DMSO reductase K21309 soeC; sulfite dehydrogenase (quinone) subunit SoeC
D PKF023_08360 SoxAX cytochrome complex subunit A K17222 soxA; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D PKF023_11150 SoxAX cytochrome complex subunit A K17222 soxA; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D PKF023_08370 putative lipoprotein K17223 soxX; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D PKF023_08340 soxY; thiosulfate oxidation carrier protein SoxY K17226 soxY; sulfur-oxidizing protein SoxY
D PKF023_11170 sulfur oxidation protein SoxY K17226 soxY; sulfur-oxidizing protein SoxY
D PKF023_08350 soxZ; thiosulfate oxidation carrier complex protein SoxZ K17227 soxZ; sulfur-oxidizing protein SoxZ
D PKF023_11160 hypothetical protein K17227 soxZ; sulfur-oxidizing protein SoxZ
D PKF023_08380 soxB; thiosulfohydrolase SoxB K17224 soxB; S-sulfosulfanyl-L-cysteine sulfohydrolase [EC:3.1.6.20]
D PKF023_08320 soxC; sulfite dehydrogenase K17225 soxC; sulfane dehydrogenase subunit SoxC
D PKF023_08330 hypothetical protein K22622 soxD; S-disulfanyl-L-cysteine oxidoreductase SoxD [EC:1.8.2.6]
D PKF023_03780 cysI; sulfite reductase K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D PKF023_11870 fccB-2; cytochrome c K17229 fccB; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [EC:1.8.2.3]
D PKF023_15570 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PKF023_07130 thtR; thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PKF023_08260 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PKF023_08820 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PKF023_18640 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D PKF023_08170 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D PKF023_14260 acyl-CoA synthetase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44]
D PKF023_09120 acyl-CoA dehydrogenase oxidoreductase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D PKF023_14230 acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:pyt00061]
D PKF023_08900 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PKF023_02190 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PKF023_02180 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PKF023_08120 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PKF023_04490 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D PKF023_04470 fabD-1; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PKF023_04460 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D PKF023_04500 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PKF023_02230 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PKF023_03540 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PKF023_04480 fabG; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PKF023_10690 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PKF023_05740 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PKF023_11770 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D PKF023_09150 fadD; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:pyt00071]
D PKF023_09610 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PKF023_09100 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D PKF023_01570 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PKF023_09110 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D PKF023_06260 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D PKF023_08480 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D PKF023_09150 fadD; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PKF023_09070 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3]
D PKF023_06440 pyridine nucleotide-disulfide oxidoreductase K05297 rubB; rubredoxin---NAD+ reductase [EC:1.18.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:pyt00121]
D PKF023_07140 choloylglycine hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:pyt00561]
D PKF023_17430 hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D PKF023_04450 plsX; phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D PKF023_03060 plsY; glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D PKF023_09170 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PKF023_17200 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PKF023_12150 glycosyl transferase K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-]
C 00564 Glycerophospholipid metabolism [PATH:pyt00564]
D PKF023_17980 gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D PKF023_03060 plsY; glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D PKF023_09170 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PKF023_17200 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PKF023_05680 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D PKF023_10590 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D PKF023_10600 psd; phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D PKF023_04640 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D PKF023_02310 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D PKF023_06240 clsA; cardiolipin synthase A K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:pyt00592]
D PKF023_09100 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:pyt01040]
D PKF023_15860 aminotransferase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D PKF023_09710 tesA; arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:pyt00230]
D PKF023_10370 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D PKF023_10920 pgm; phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PKF023_17740 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PKF023_08160 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D PKF023_13030 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D PKF023_15880 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D PKF023_09730 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D PKF023_16080 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D PKF023_16560 purK; N5-carboxyaminoimidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D PKF023_16570 purE; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D PKF023_16580 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D PKF023_16410 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D PKF023_17310 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PKF023_09050 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D PKF023_17550 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D PKF023_07230 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D PKF023_15990 UPF0345 protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D PKF023_09560 laccase domain protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D PKF023_05880 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PKF023_07290 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PKF023_10810 non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D PKF023_05890 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PKF023_10780 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D PKF023_02130 nrdA; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PKF023_02140 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D PKF023_10760 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D PKF023_12170 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D PKF023_08580 relA; GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D PKF023_07410 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D PKF023_02160 sugar kinase K00856 ADK; adenosine kinase [EC:2.7.1.20]
D PKF023_02950 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D PKF023_02490 apaH; bis(5'-nucleosyl)-tetraphosphatase, symmetrical K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D PKF023_17020 gamma-glutamyltransferase K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126]
C 00240 Pyrimidine metabolism [PATH:pyt00240]
D PKF023_10190 carB; carbamoyl-phosphate synthase (glutamine-hydrolyzing) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PKF023_10200 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PKF023_02550 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D PKF023_17420 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D PKF023_07790 pyrD; dihydroorotate dehydrogenase (quinone) K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D PKF023_18600 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D PKF023_02280 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D PKF023_05650 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D PKF023_07290 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PKF023_13080 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D PKF023_09760 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D PKF023_14370 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D PKF023_17550 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D PKF023_07230 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D PKF023_15990 UPF0345 protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D PKF023_02540 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D PKF023_12750 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D PKF023_02130 nrdA; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PKF023_02140 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D PKF023_09910 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D PKF023_15930 dnaS; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D PKF023_04290 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:pyt00250]
D PKF023_10960 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D PKF023_04850 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D PKF023_13180 serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D PKF023_12590 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D PKF023_16000 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PKF023_12700 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PKF023_07410 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D PKF023_16410 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D PKF023_02550 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D PKF023_02730 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PKF023_00900 gltB; glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D PKF023_00910 gltD; glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D PKF023_13330 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D PKF023_10190 carB; carbamoyl-phosphate synthase (glutamine-hydrolyzing) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PKF023_10200 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PKF023_18440 glmS-2; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PKF023_08160 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:pyt00260]
D PKF023_08920 ask; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PKF023_08060 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PKF023_04860 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PKF023_15630 thrB; homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39]
D PKF023_04870 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D PKF023_02910 glyA1; serine hydroxymethyltransferase 1 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PKF023_13180 serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D PKF023_04320 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D PKF023_17430 hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D PKF023_18020 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PKF023_18950 gpmB; phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PKF023_14420 serC-1; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D PKF023_09620 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D PKF023_07740 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_08720 odhL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_00270 gcvH2; glycine cleavage system H protein 2 K02437 gcvH; glycine cleavage system H protein
D PKF023_10590 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D PKF023_17540 ilvA; L-threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PKF023_08110 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PKF023_08100 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:pyt00270]
D PKF023_08820 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PKF023_18330 metH1; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PKF023_18340 metH2; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PKF023_18560 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D PKF023_09740 hypothetical protein K00797 speE; spermidine synthase [EC:2.5.1.16]
D PKF023_09060 mtnN; 5'-nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D PKF023_09560 laccase domain protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D PKF023_05010 tyrB-2; aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PKF023_18550 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D PKF023_08920 ask; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PKF023_08060 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PKF023_04860 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PKF023_18640 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D PKF023_08170 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D PKF023_16620 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PKF023_03520 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PKF023_18090 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D PKF023_18080 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D PKF023_15570 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PKF023_07130 thtR; thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PKF023_08260 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PKF023_07940 mdH; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PKF023_14290 cysM; cysteine synthase K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D PKF023_14420 serC-1; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:pyt00280]
D PKF023_16620 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PKF023_03520 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PKF023_07740 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_08720 odhL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_06260 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D PKF023_01570 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PKF023_09100 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D PKF023_09470 pccA; acetyl/propionyl-CoA carboxylase subunit alpha K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D PKF023_09460 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D PKF023_09440 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PKF023_06750 mmsB; 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D PKF023_10350 mmsA; methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PKF023_12920 malonyl-CoA synthetase K18661 matB; malonyl-CoA/methylmalonyl-CoA synthetase [EC:6.2.1.76 6.2.1.-]
D PKF023_11230 aspartate aminotransferase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D PKF023_13810 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D PKF023_08550 succinyl-CoA--3-ketoacid-CoA transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D PKF023_08560 CoA-transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D PKF023_09610 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pyt00290]
D PKF023_17540 ilvA; L-threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PKF023_08020 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PKF023_08040 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PKF023_08050 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D PKF023_10630 ilvB; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PKF023_10620 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PKF023_10610 ilvC; ketol-acid reductoisomerase (NADP(+)) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D PKF023_12430 ilvD_2; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D PKF023_16620 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PKF023_03520 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PKF023_04850 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D PKF023_10580 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:pyt00300]
D PKF023_04860 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PKF023_08920 ask; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PKF023_08060 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PKF023_08770 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PKF023_02400 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D PKF023_05560 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D PKF023_15750 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PKF023_05550 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D PKF023_18590 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D PKF023_00820 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D PKF023_01680 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PKF023_01690 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:pyt00310]
D PKF023_08710 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D PKF023_07740 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_08720 odhL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_08480 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D PKF023_01570 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PKF023_09610 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PKF023_02730 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PKF023_09330 hypothetical protein K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-]
D PKF023_05310 3-keto-5-aminohexanoate cleavage protein K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247]
C 00220 Arginine biosynthesis [PATH:pyt00220]
D PKF023_16010 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D PKF023_16000 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PKF023_12700 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PKF023_10190 carB; carbamoyl-phosphate synthase (glutamine-hydrolyzing) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PKF023_10200 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PKF023_13330 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D PKF023_04850 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D PKF023_07560 argA; amino-acid acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D PKF023_01870 argJ; arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D PKF023_18660 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D PKF023_17380 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D PKF023_15750 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:pyt00330]
D PKF023_12730 ornithine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19]
D PKF023_09740 hypothetical protein K00797 speE; spermidine synthase [EC:2.5.1.16]
D PKF023_16320 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D PKF023_02060 hypothetical protein K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D PKF023_02440 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00340 Histidine metabolism [PATH:pyt00340]
D PKF023_01020 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D PKF023_07400 hisZ; ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D PKF023_01120 hisE; phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D PKF023_01110 hypothetical protein K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D PKF023_01070 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D PKF023_01060 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D PKF023_01080 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D PKF023_01050 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D PKF023_01040 hisC1; histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PKF023_14400 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PKF023_01030 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:pyt00350]
D PKF023_01040 hisC1; histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PKF023_14400 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PKF023_05010 tyrB-2; aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PKF023_17040 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D PKF023_02730 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PKF023_06900 fumarylacetoacetase K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20]
D PKF023_16950 5-carboxymethyl-2-hydroxymuconate isomerase K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20]
C 00360 Phenylalanine metabolism [PATH:pyt00360]
D PKF023_01570 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PKF023_07880 hbdA; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D PKF023_14660 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D PKF023_01040 hisC1; histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PKF023_14400 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PKF023_05010 tyrB-2; aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PKF023_19000 katG; catalase-peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00380 Tryptophan metabolism [PATH:pyt00380]
D PKF023_08710 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D PKF023_07740 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_08720 odhL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_08480 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D PKF023_01570 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PKF023_09610 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PKF023_19000 katG; catalase-peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pyt00400]
D PKF023_16260 aroG; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PKF023_00840 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D PKF023_02200 aroQ; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D PKF023_02260 aroE; shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D PKF023_00850 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D PKF023_14380 hypothetical protein K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D PKF023_10020 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D PKF023_01520 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PKF023_01510 trpG; aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D PKF023_01500 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D PKF023_08090 trpF; N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D PKF023_01490 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D PKF023_08110 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PKF023_08100 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D PKF023_14410 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D PKF023_14390 hypothetical protein K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D PKF023_01040 hisC1; histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PKF023_14400 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PKF023_05010 tyrB-2; aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:pyt00410]
D PKF023_12800 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D PKF023_11230 aspartate aminotransferase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D PKF023_01570 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PKF023_12940 hypothetical protein K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9]
D PKF023_10350 mmsA; methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:pyt00430]
D PKF023_11270 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PKF023_12590 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D PKF023_11240 transcriptional regulator K07255 tauX; taurine dehydrogenase small subunit [EC:1.4.2.-]
D PKF023_11250 FAD-dependent oxidoreductase K07256 tauY; taurine dehydrogenase large subunit [EC:1.4.2.-]
D PKF023_05150 sulfoacetaldehyde acetyltransferase K03852 xsc; sulfoacetaldehyde acetyltransferase [EC:2.3.3.15]
D PKF023_05410 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D PKF023_05280 AMP-dependent ligase K26005 sauT; sulfoacetate-CoA ligase [EC:6.2.1.-]
D PKF023_05270 hypothetical protein K15515 sauS; sulfoacetaldehyde dehydrogenase [EC:1.2.1.81]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:pyt00450]
D PKF023_18330 metH1; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PKF023_18340 metH2; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PKF023_04300 ferredoxin--NADP reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D PKF023_12330 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D PKF023_06760 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D PKF023_12770 hypothetical protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:pyt00460]
D PKF023_11270 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PKF023_02910 glyA1; serine hydroxymethyltransferase 1 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:pyt00470]
D PKF023_09530 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D PKF023_01750 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PKF023_11060 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D PKF023_01710 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PKF023_18590 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D PKF023_00820 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:pyt00480]
D PKF023_11270 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PKF023_13320 UPF0271 protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D PKF023_18090 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D PKF023_18080 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D PKF023_12980 pepA; putative cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D PKF023_12570 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D PKF023_16420 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PKF023_18400 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PKF023_04140 icd2; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PKF023_18240 btuE; glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D PKF023_01790 peroxiredoxin K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27]
D PKF023_09740 hypothetical protein K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:pyt00540]
D PKF023_05750 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D PKF023_01800 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D PKF023_05730 lpxD; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D PKF023_08850 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D PKF023_05760 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D PKF023_02980 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D PKF023_17610 arabinose-5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D PKF023_09770 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D PKF023_17620 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D PKF023_02960 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D PKF023_16400 waaA; 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D PKF023_18570 acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D PKF023_18580 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D PKF023_18810 lpxO1; LPS biosynthetic protein LpxO K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D PKF023_00320 gmhA_1; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D PKF023_03500 gmhA_2; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D PKF023_14320 waaE; ADP-heptose synthase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D PKF023_17190 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D PKF023_18230 cytidyltransferase K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D PKF023_14310 hldD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D PKF023_03470 sugar kinase K07031 hddA; D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168]
D PKF023_02670 waaC1; LPS heptosyltransferase-1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D PKF023_16640 waaF; ADP-heptose--LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:pyt00541]
D PKF023_15670 galU-1; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PKF023_03160 galE_1; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PKF023_03340 galE_2; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PKF023_14330 udg2; UDP-glucose 6-dehydrogenase 2 K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PKF023_02650 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PKF023_02630 rmlB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PKF023_02660 rfbC-2; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D PKF023_02640 rfbD; NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D PKF023_03290 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D PKF023_15740 CDP-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D PKF023_03180 xanB; xanthan biosynthesis protein XanB K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D PKF023_03190 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D PKF023_03200 wbcJ; GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D PKF023_18450 glmU; bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D PKF023_03280 wbjB; UDP-glucose 4-epimerase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D PKF023_03270 rffE; UDP-N-acetyl glucosamine 2-epimerase K24256 wbvD; UDP-L-QuiNAc synthase
D PKF023_03640 wbpM; nucleotide sugar epimerase/dehydratase WbpM K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00550 Peptidoglycan biosynthesis [PATH:pyt00550]
D PKF023_01010 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PKF023_03030 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PKF023_01740 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D PKF023_01710 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PKF023_01680 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PKF023_01750 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PKF023_01690 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D PKF023_05670 uppS; isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D PKF023_02690 uppP2; undecaprenyl-diphosphatase 2 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PKF023_01700 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PKF023_01730 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D PKF023_02270 hypothetical protein K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D PKF023_00880 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PKF023_18770 mrdA; penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PKF023_01670 ftsI; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PKF023_16540 dacB; peptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:pyt00552]
D PKF023_02690 uppP2; undecaprenyl-diphosphatase 2 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PKF023_03640 wbpM; nucleotide sugar epimerase/dehydratase WbpM K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:pyt00543]
D PKF023_08820 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:pyt00730]
D PKF023_09300 thiC; phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D PKF023_09250 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D PKF023_05040 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PKF023_09290 oxidoreductase K03153 thiO; glycine oxidase [EC:1.4.3.19]
D PKF023_15530 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D PKF023_09270 thiG; thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D PKF023_09260 hypothetical protein K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D PKF023_02320 thiL; thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D PKF023_14140 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D PKF023_02950 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:pyt00740]
D PKF023_02760 ribBA; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D PKF023_02800 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D PKF023_02750 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D PKF023_02810 ribE; riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D PKF023_15890 ribF; riboflavin biosynthesis protein K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D PKF023_10370 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:pyt00750]
D PKF023_12620 pdxH; pyridoxine/pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D PKF023_14420 serC-1; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D PKF023_17220 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D PKF023_04570 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D PKF023_04870 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:pyt00760]
D PKF023_10960 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D PKF023_10930 nadA; quinolinate synthase A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D PKF023_10940 nadC; nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D PKF023_17550 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D PKF023_07230 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D PKF023_13050 nadD; putative nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D PKF023_12390 nadE; NAD+ synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D PKF023_02300 competence damage-inducible protein A K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D PKF023_16200 nadK; NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D PKF023_16440 pntAA; NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D PKF023_16450 pntAB; NAD(P)(+) transhydrogenase K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D PKF023_16460 pntB; NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D PKF023_02730 gabD; NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:pyt00770]
D PKF023_10630 ilvB; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PKF023_10620 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PKF023_10610 ilvC; ketol-acid reductoisomerase (NADP(+)) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D PKF023_12430 ilvD_2; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D PKF023_16140 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D PKF023_01990 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D PKF023_12800 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D PKF023_15920 coaBC; phosphopantothenoylcysteine decarboxylase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D PKF023_17780 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D PKF023_01910 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D PKF023_04580 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D PKF023_16620 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PKF023_03520 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:pyt00780]
D PKF023_04500 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PKF023_02230 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PKF023_03540 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PKF023_04480 fabG; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PKF023_10690 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PKF023_05740 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PKF023_11770 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D PKF023_01600 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D PKF023_01610 bioA; adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D PKF023_01590 bioD; ATP-dependent dethiobiotin synthetase BioD K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D PKF023_01620 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
C 00785 Lipoic acid metabolism [PATH:pyt00785]
D PKF023_18160 lipB; octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D PKF023_18150 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D PKF023_07740 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_08720 odhL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_07720 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PKF023_07730 pdhB; acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PKF023_08700 sucA; 2-oxoglutarate dehydrogenase subunit E1 K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D PKF023_08710 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D PKF023_00270 gcvH2; glycine cleavage system H protein 2 K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:pyt00790]
D PKF023_03080 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D PKF023_15520 folE2; GTP cyclohydrolase FolE2 K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16]
D PKF023_17450 ntpA; NUDIX pyrophosphatase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D PKF023_18470 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D PKF023_16130 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D PKF023_10140 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D PKF023_04280 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D PKF023_08130 folC; bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D PKF023_02760 ribBA; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D PKF023_07830 para-aminobenzoate synthase K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D PKF023_05950 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PKF023_04220 phhB; putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D PKF023_05940 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PKF023_02840 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D PKF023_17560 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D PKF023_04360 moaA; cyclic pyranopterin monophosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D PKF023_16680 moaC; cyclic pyranopterin monophosphate synthase accessory protein K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D PKF023_04900 moaE; molybdopterin converting factor subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D PKF023_14110 mogA; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D PKF023_04340 moeA_1; molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D PKF023_04880 moeA_2; molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D PKF023_04350 mobA; molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:pyt00670]
D PKF023_04280 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D PKF023_07690 folD; bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D PKF023_02910 glyA1; serine hydroxymethyltransferase 1 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PKF023_15880 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D PKF023_17310 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PKF023_04790 formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D PKF023_19090 fmt_2; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D PKF023_18330 metH1; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PKF023_18340 metH2; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PKF023_04290 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D PKF023_11140 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D PKF023_18540 metF; methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:pyt00860]
D PKF023_09810 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PKF023_01420 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D PKF023_02480 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D PKF023_00790 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D PKF023_12690 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D PKF023_00250 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D PKF023_13040 hemF; oxygen-dependent coproporphyrinogen-III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D PKF023_11970 hemN; coproporphyrinogen-III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D PKF023_02450 membrane protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D PKF023_16180 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D PKF023_03760 uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D PKF023_17850 ctaB; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D PKF023_17860 cytochrome c oxidase subunit I K02259 COX15; heme a synthase [EC:1.17.99.9]
D PKF023_03750 cobalamin biosynthesis protein CbiX K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D PKF023_05140 cobaltochelatase subunit CobS K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2]
D PKF023_16270 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PKF023_14150 cobD; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:pyt00130]
D PKF023_16330 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D PKF023_01460 ubiquinone biosynthesis hydroxylase UbiH K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D PKF023_14450 ubiG; ubiquinone biosynthesis O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D PKF023_17280 hypothetical protein K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D PKF023_17510 ubiE; ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D PKF023_01630 coq7; 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D PKF023_10050 wrbA; NAD(P)H quinone oxidoreductase K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D PKF023_15030 FMN reductase K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:pyt00900]
D PKF023_15530 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D PKF023_05690 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D PKF023_09640 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D PKF023_17730 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D PKF023_09650 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D PKF023_07310 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D PKF023_15810 ispH1; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1 K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D PKF023_09610 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PKF023_15540 (2E,6E)-farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D PKF023_02020 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D PKF023_05670 uppS; isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D PKF023_14130 peptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:pyt00907]
D PKF023_01570 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PKF023_13810 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D PKF023_09100 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D PKF023_02360 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
D PKF023_03380 nucleoside-diphosphate-sugar pyrophosphorylase K21210 ncsC; NDP-mannose synthase
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:pyt00523]
D PKF023_02650 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PKF023_02630 rmlB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PKF023_02660 rfbC-2; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D PKF023_02640 rfbD; NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D PKF023_03290 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D PKF023_02630 rmlB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D PKF023_11110 penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11]
C 00332 Carbapenem biosynthesis [PATH:pyt00332]
D PKF023_02060 hypothetical protein K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D PKF023_02440 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:pyt00261]
D PKF023_08920 ask; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PKF023_08060 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PKF023_08770 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PKF023_02400 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:pyt00521]
D PKF023_10920 pgm; phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PKF023_08840 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D PKF023_02650 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PKF023_02630 rmlB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PKF023_02660 rfbC-2; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D PKF023_02640 rfbD; NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D PKF023_03290 NAD(P)-dependent oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:pyt00525]
D PKF023_02650 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PKF023_02630 rmlB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:pyt00401]
D PKF023_14390 hypothetical protein K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D PKF023_01040 hisC1; histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PKF023_14400 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PKF023_05010 tyrB-2; aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D PKF023_01520 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PKF023_01510 trpG; aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D PKF023_04470 fabD-1; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PKF023_02230 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PKF023_03540 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PKF023_04480 fabG; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PKF023_10690 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PKF023_11770 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D PKF023_04490 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:pyt00999]
D PKF023_18560 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D PKF023_02260 aroE; shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:pyt00362]
D PKF023_03860 pcaD; 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D PKF023_09100 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D PKF023_13770 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D PKF023_13700 pcaC; 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D PKF023_05090 fdx; (2Fe-2S) ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D PKF023_09110 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D PKF023_08480 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D PKF023_01570 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PKF023_07880 hbdA; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D PKF023_14660 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D PKF023_09610 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:pyt00627]
D PKF023_01570 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PKF023_07630 glnA; glutamine synthetase K20712 glnA; 3-(hydroxyamino)phenol mutase [EC:5.4.4.3]
C 00364 Fluorobenzoate degradation [PATH:pyt00364]
D PKF023_07460 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D PKF023_15600 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:pyt00625]
D PKF023_10090 hydrolase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3]
D PKF023_18990 dheII; haloacid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:pyt00361]
D PKF023_07460 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D PKF023_15600 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D PKF023_18990 dheII; haloacid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D PKF023_10090 hydrolase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3]
C 00623 Toluene degradation [PATH:pyt00623]
D PKF023_07460 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D PKF023_15600 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
D PKF023_13770 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation [PATH:pyt00633]
D PKF023_06470 nerA; alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D PKF023_09100 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
D PKF023_17040 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:pyt00930]
D PKF023_09070 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3]
D PKF023_13370 acyl-CoA dehydrogenase K06446 DCAA; acyl-CoA dehydrogenase [EC:1.3.99.-]
D PKF023_01570 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D PKF023_13770 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:pyt03020]
D PKF023_00430 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PKF023_00440 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PKF023_00750 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PKF023_10770 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:pyt03010]
D PKF023_14360 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D PKF023_05630 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D PKF023_00560 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D PKF023_00740 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D PKF023_00670 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D PKF023_04680 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D PKF023_00460 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D PKF023_00640 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D PKF023_17390 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D PKF023_00490 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D PKF023_00730 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PKF023_00450 hypothetical protein K02950 RP-S12; small subunit ribosomal protein S12
D PKF023_00720 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D PKF023_00630 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D PKF023_10560 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D PKF023_14200 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D PKF023_00590 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D PKF023_04700 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D PKF023_00540 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D PKF023_16030 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D PKF023_15500 rpsU2; 30S ribosomal protein S21 B K02970 RP-S21; small subunit ribosomal protein S21
D PKF023_00400 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D PKF023_00530 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D PKF023_00500 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D PKF023_00510 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D PKF023_00620 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D PKF023_00650 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D PKF023_00420 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D PKF023_04710 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D PKF023_00410 hypothetical protein K02864 RP-L10; large subunit ribosomal protein L10
D PKF023_00390 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D PKF023_17400 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D PKF023_00600 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D PKF023_00690 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D PKF023_00570 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D PKF023_00760 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D PKF023_00660 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D PKF023_14170 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D PKF023_08620 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D PKF023_02030 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D PKF023_00550 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D PKF023_00520 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D PKF023_00610 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D PKF023_17750 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D PKF023_02040 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D PKF023_15840 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D PKF023_00580 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D PKF023_00680 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D PKF023_07010 rpmE2; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31
D PKF023_04440 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D PKF023_15850 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D PKF023_08610 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D PKF023_r00010 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PKF023_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PKF023_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:pyt00970]
D PKF023_t00200 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PKF023_t00260 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PKF023_t00160 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PKF023_t00210 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PKF023_t00320 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PKF023_t00250 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PKF023_t00110 tRNA-Met K14230 tRNA-Met; tRNA Met
D PKF023_t00370 tRNA-Met K14230 tRNA-Met; tRNA Met
D PKF023_09810 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PKF023_18720 gatA; glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PKF023_18710 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D PKF023_18730 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D PKF023_15720 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PKF023_15690 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PKF023_17460 aspS; aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PKF023_17170 glyQ; glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PKF023_17180 glyS; glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PKF023_08590 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PKF023_12290 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PKF023_08880 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PKF023_12770 hypothetical protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PKF023_04790 formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D PKF023_19090 fmt_2; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D PKF023_15660 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PKF023_02410 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PKF023_15900 ileS1; isoleucine--tRNA ligase 1 K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PKF023_05420 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PKF023_18310 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PKF023_02090 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PKF023_07320 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PKF023_08630 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PKF023_08640 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PKF023_17350 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PKF023_08750 trpS-1; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:pyt03060]
D PKF023_00700 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D PKF023_00370 secE; protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D PKF023_10520 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D PKF023_16380 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D PKF023_16390 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D PKF023_16370 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D PKF023_19150 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PKF023_01820 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PKF023_17990 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D PKF023_02100 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PKF023_17820 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D PKF023_01140 tatE; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D PKF023_01150 tatB; sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D PKF023_01160 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
D PKF023_04530 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PKF023_15910 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:pyt04122]
D PKF023_05040 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PKF023_15570 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PKF023_07130 thtR; thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PKF023_08260 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PKF023_15680 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D PKF023_16430 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PKF023_04900 moaE; molybdopterin converting factor subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D PKF023_04360 moaA; cyclic pyranopterin monophosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D PKF023_04890 moaD; molybdopterin synthase sulfur carrier subunit K03636 moaD; sulfur-carrier protein
D PKF023_18040 molybdopterin biosynthesis protein MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D PKF023_16680 moaC; cyclic pyranopterin monophosphate synthase accessory protein K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D PKF023_14110 mogA; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D PKF023_09280 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:pyt03018]
D PKF023_02080 hypothetical protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D PKF023_04370 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D PKF023_09780 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PKF023_10550 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PKF023_06770 rhlE1; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D PKF023_13160 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D PKF023_07500 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D PKF023_07020 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D PKF023_16160 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PKF023_16490 groL1; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PKF023_07360 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D PKF023_12110 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D PKF023_12120 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D PKF023_16120 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:pyt03030]
D PKF023_10290 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PKF023_15300 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PKF023_13140 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PKF023_07150 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PKF023_02430 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PKF023_12970 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PKF023_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PKF023_04720 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PKF023_15480 hypothetical protein K02316 dnaG; DNA primase [EC:2.7.7.101]
D PKF023_17570 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D PKF023_10260 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D PKF023_05770 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D PKF023_15610 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PKF023_05590 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:pyt03410]
D PKF023_04980 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D PKF023_01430 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D PKF023_17700 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D PKF023_17710 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PKF023_08890 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D PKF023_07660 xth-2; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PKF023_18610 xth-1; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PKF023_15610 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PKF023_05440 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D PKF023_05590 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:pyt03420]
D PKF023_09630 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D PKF023_17590 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D PKF023_05020 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D PKF023_04630 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D PKF023_15650 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PKF023_15610 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PKF023_05590 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:pyt03430]
D PKF023_15650 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PKF023_03010 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D PKF023_15550 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D PKF023_07110 exoX; DNA exonuclease K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D PKF023_05440 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D PKF023_17570 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D PKF023_13140 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PKF023_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PKF023_07150 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PKF023_02430 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PKF023_10290 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PKF023_15300 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PKF023_12970 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PKF023_05590 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:pyt03440]
D PKF023_05440 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D PKF023_17570 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D PKF023_04560 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D PKF023_07170 recR; recombination protein RecR K06187 recR; recombination protein RecR
D PKF023_16750 recA; protein RecA K03553 recA; recombination protein RecA
D PKF023_15610 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PKF023_17330 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D PKF023_17340 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D PKF023_17320 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PKF023_16340 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D PKF023_13140 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PKF023_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PKF023_07150 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PKF023_02430 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PKF023_10290 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PKF023_15300 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PKF023_12970 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PKF023_00260 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D PKF023_04690 priB; primosomal replication protein N K02686 priB; primosomal replication protein N
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:pyt03250]
D PKF023_07840 ppiA; peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:pyt02010]
D PKF023_06820 tungsten ABC transporter substrate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D PKF023_06210 ABC transporter permease K05773 tupB; tungstate transport system permease protein
D PKF023_05360 hypothetical protein K15554 ssuC; sulfonate transport system permease protein
D PKF023_05370 nitrate ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D PKF023_08300 modB; molybdenum ABC transporter permease subunit K02018 modB; molybdate transport system permease protein
D PKF023_00960 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein
D PKF023_00940 outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D PKF023_00930 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D PKF023_10740 glycoprotein endopeptidase metalloprotease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D PKF023_00970 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein
D PKF023_00920 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D PKF023_10730 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D PKF023_12260 pstS; phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D PKF023_12250 pstC; phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein
D PKF023_12240 pstA; phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D PKF023_12230 pstB; phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D PKF023_01230 gltI; amino acid ABC transporter substrate-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D PKF023_01250 glutamate/aspartate transporter permease GltK K10002 gltK; glutamate/aspartate transport system permease protein
D PKF023_01240 glutamate ABC transporter permease K10003 gltJ; glutamate/aspartate transport system permease protein
D PKF023_01260 amino acid ABC transporter ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D PKF023_00080 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PKF023_03950 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PKF023_06320 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PKF023_15800 branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PKF023_00090 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D PKF023_03960 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D PKF023_06310 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D PKF023_15790 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D PKF023_00100 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D PKF023_03970 hypothetical protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PKF023_06300 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D PKF023_15780 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D PKF023_00060 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PKF023_06290 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PKF023_15770 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PKF023_00070 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PKF023_03980 livF; ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PKF023_06280 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PKF023_15760 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PKF023_11760 ABC transporter substrate-binding protein K13893 yejA; microcin C transport system substrate-binding protein
D PKF023_11750 microcin C ABC transporter permease YejB K13894 yejB; microcin C transport system permease protein
D PKF023_11740 ABC transporter permease K13895 yejE; microcin C transport system permease protein
D PKF023_11730 ABC transporter ATP-binding protein K13896 yejF; microcin C transport system ATP-binding protein
D PKF023_03220 transport permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D PKF023_03350 xapG; transport permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D PKF023_03230 sugar ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D PKF023_03360 xapH; ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D PKF023_05460 lipoprotein releasing system protein K09808 lolC_E; lipoprotein-releasing system permease protein
D PKF023_05470 lolD; lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D PKF023_14990 hypothetical protein K02196 ccmD; heme exporter protein D
D PKF023_15000 ccmC; heme export protein K02195 ccmC; heme exporter protein C
D PKF023_15010 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B
D PKF023_15020 ccmA; cytochrome c biogenesis ATP-binding export protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D PKF023_12990 LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D PKF023_13000 LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D PKF023_17650 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D PKF023_13100 msbA; lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D PKF023_17440 metal ABC transporter permease K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D PKF023_11470 hypothetical protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
C 02060 Phosphotransferase system (PTS) [PATH:pyt02060]
D PKF023_18050 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D PKF023_18060 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D PKF023_18070 PTS mannose transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D PKF023_17670 ptsN; PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:pyt03070]
D PKF023_03690 gspG; type II secretion system protein GspG K02456 gspG; general secretion pathway protein G
D PKF023_16380 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D PKF023_16390 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D PKF023_00370 secE; protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D PKF023_10520 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D PKF023_00700 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D PKF023_16370 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D PKF023_19150 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PKF023_01820 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PKF023_17820 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D PKF023_17990 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D PKF023_02100 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PKF023_01140 tatE; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D PKF023_01150 tatB; sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D PKF023_01160 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:pyt02020]
D PKF023_12200 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D PKF023_12210 phoB; DNA-binding response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D PKF023_12260 pstS; phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D PKF023_04510 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D PKF023_12490 tricarboxylate transporter K07793 tctA; putative tricarboxylic transport membrane protein
D PKF023_15710 membrane protein K07793 tctA; putative tricarboxylic transport membrane protein
D PKF023_12500 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein
D PKF023_15700 membrane protein K07794 tctB; putative tricarboxylic transport membrane protein
D PKF023_12510 tricarboxylate transporter K07795 tctC; putative tricarboxylic transport membrane protein
D PKF023_07060 C4-dicarboxylate ABC transporter substrate-binding protein K07795 tctC; putative tricarboxylic transport membrane protein
D PKF023_17860 cytochrome c oxidase subunit I K02259 COX15; heme a synthase [EC:1.17.99.9]
D PKF023_11810 CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D PKF023_16520 putative transcriptional regulator K07690 evgA; two-component system, NarL family, response regulator EvgA
D PKF023_00290 fatty acid desaturase K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45]
D PKF023_05610 glnD; bifunctional uridylyltransferase/uridylyl-removing enzyme K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D PKF023_12400 glnB; nitrogen regulatory protein P-II 1 K04751 glnB; nitrogen regulatory protein P-II 1
D PKF023_13860 hypothetical protein K04751 glnB; nitrogen regulatory protein P-II 1
D PKF023_07640 glnL; nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D PKF023_07650 ntrC; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D PKF023_19050 PAS domain-containing sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D PKF023_19040 two-component system response regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D PKF023_09610 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PKF023_18870 dctA; C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein
D PKF023_16700 general secretion pathway protein GspH K02650 pilA; type IV pilus assembly protein PilA
D PKF023_01260 amino acid ABC transporter ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D PKF023_01250 glutamate/aspartate transporter permease GltK K10002 gltK; glutamate/aspartate transport system permease protein
D PKF023_01240 glutamate ABC transporter permease K10003 gltJ; glutamate/aspartate transport system permease protein
D PKF023_01230 gltI; amino acid ABC transporter substrate-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D PKF023_01300 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D PKF023_01310 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D PKF023_01320 petC; cytochrome c K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D PKF023_00340 cytochrome c551 K08738 CYC; cytochrome c
D PKF023_14840 cytochrome c oxidase, cbb3-type subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D PKF023_14830 peptidase S41 K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D PKF023_14820 Cbb3-type cytochrome c oxidase subunit K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D PKF023_01300 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:pyt02024]
D PKF023_07360 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D PKF023_01520 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PKF023_01510 trpG; aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D PKF023_16260 aroG; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PKF023_00080 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PKF023_03950 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PKF023_06320 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PKF023_15800 branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PKF023_00090 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D PKF023_03960 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D PKF023_06310 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D PKF023_15790 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D PKF023_00100 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D PKF023_03970 hypothetical protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PKF023_06300 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D PKF023_15780 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D PKF023_00060 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PKF023_06290 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PKF023_15770 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PKF023_00070 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PKF023_03980 livF; ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PKF023_06280 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PKF023_15760 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PKF023_09150 fadD; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PKF023_02800 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D PKF023_19150 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PKF023_00370 secE; protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D PKF023_10520 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D PKF023_00700 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D PKF023_16370 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D PKF023_01820 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PKF023_17820 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D PKF023_17990 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D PKF023_02100 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
D PKF023_15470 hypothetical protein K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D PKF023_09780 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:pyt04980]
D PKF023_16270 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PKF023_09450 LAO/AO transport system kinase K07588 MMAA; GTPase [EC:3.6.5.-]
D PKF023_09440 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PKF023_18330 metH1; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PKF023_18340 metH2; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:pyt01501]
D PKF023_18620 MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D PKF023_04590 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D PKF023_18420 MexH family multidrug efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PKF023_18410 acriflavine resistance protein B K18138 acrB; multidrug efflux pump
D PKF023_00880 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PKF023_18770 mrdA; penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PKF023_01670 ftsI; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:pyt01502]
D PKF023_01750 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PKF023_09530 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D PKF023_01690 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D PKF023_01700 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PKF023_01730 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:pyt01503]
D PKF023_04800 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D PKF023_04770 hypothetical protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D PKF023_13250 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PKF023_04510 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D PKF023_18290 dsbA; thiol:disulfide interchange protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D PKF023_07840 ppiA; peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D PKF023_18420 MexH family multidrug efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PKF023_18410 acriflavine resistance protein B K18138 acrB; multidrug efflux pump
D PKF023_05750 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:pyt01000]
C 01001 Protein kinases [BR:pyt01001]
D PKF023_12200 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D PKF023_07640 glnL; nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D PKF023_19050 PAS domain-containing sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:pyt01009]
D PKF023_18550 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D PKF023_15430 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D PKF023_09620 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:pyt01002]
D PKF023_15910 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D PKF023_01920 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PKF023_05890 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PKF023_08160 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D PKF023_00900 gltB; glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D PKF023_18440 glmS-2; glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PKF023_07140 choloylglycine hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
D PKF023_12570 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D PKF023_07680 oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D PKF023_17800 peptidase M16 K07263 pqqL; zinc protease [EC:3.4.24.-]
D PKF023_17810 zinc protease K07263 pqqL; zinc protease [EC:3.4.24.-]
D PKF023_12980 pepA; putative cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D PKF023_05550 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D PKF023_05620 map-1; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D PKF023_17270 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D PKF023_10150 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PKF023_14130 peptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D PKF023_19080 htpX; protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D PKF023_16670 hypothetical protein K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D PKF023_04510 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D PKF023_01270 DegQ protease K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D PKF023_07770 hypothetical protein K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D PKF023_16540 dacB; peptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D PKF023_09670 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D PKF023_09690 lon; Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D PKF023_04660 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D PKF023_07080 umuD; SOS response transcriptional regulator K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D PKF023_04530 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PKF023_18030 hypothetical protein K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D PKF023_11110 penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11]
D PKF023_04400 peptidase K04773 sppA; protease IV [EC:3.4.21.-]
D PKF023_05970 muramoyltetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D PKF023_11270 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PKF023_17020 gamma-glutamyltransferase K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126]
D PKF023_09220 yegQ; U32 family peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D PKF023_14100 microcin-processing peptidase K03592 pmbA; PmbA protein
D PKF023_16250 tldD; peptidase C69 K03568 tldD; TldD protein
D PKF023_07390 hflC; protein HflC K04087 hflC; modulator of FtsH protease HflC
D PKF023_07380 hflK; protease modulator HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:pyt01003]
D PKF023_12150 glycosyl transferase K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-]
D PKF023_02270 hypothetical protein K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D PKF023_00880 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:pyt01005]
D PKF023_05750 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D PKF023_05760 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D PKF023_01800 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D PKF023_05730 lpxD; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D PKF023_08850 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D PKF023_02980 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D PKF023_18570 acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D PKF023_18580 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D PKF023_18810 lpxO1; LPS biosynthetic protein LpxO K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D PKF023_16400 waaA; 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D PKF023_09770 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D PKF023_02960 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D PKF023_17620 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D PKF023_17610 arabinose-5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D PKF023_14320 waaE; ADP-heptose synthase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D PKF023_18230 cytidyltransferase K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D PKF023_02670 waaC1; LPS heptosyltransferase-1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D PKF023_16640 waaF; ADP-heptose--LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D PKF023_00320 gmhA_1; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D PKF023_03500 gmhA_2; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D PKF023_17190 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D PKF023_14310 hldD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D PKF023_03630 hypothetical protein K13012 wbqP; O-antigen biosynthesis protein WbqP
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:pyt01011]
D PKF023_01010 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PKF023_03030 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PKF023_01740 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D PKF023_01710 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PKF023_01680 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PKF023_01750 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PKF023_09530 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D PKF023_11060 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D PKF023_05970 muramoyltetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D PKF023_01700 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PKF023_01730 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D PKF023_02690 uppP2; undecaprenyl-diphosphatase 2 K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PKF023_16040 putative lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D PKF023_00880 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PKF023_18770 mrdA; penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PKF023_01670 ftsI; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PKF023_16540 dacB; peptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D PKF023_07770 hypothetical protein K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D PKF023_02270 hypothetical protein K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D PKF023_18520 transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D PKF023_01560 murein transglycosylase K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D PKF023_14280 hypothetical protein K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D PKF023_10220 hypothetical protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D PKF023_09920 hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D PKF023_13250 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PKF023_02120 hypothetical protein K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:pyt01004]
D PKF023_04470 fabD-1; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PKF023_04460 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D PKF023_04500 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PKF023_02230 beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PKF023_03540 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PKF023_04480 fabG; beta-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PKF023_10690 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PKF023_05740 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PKF023_11770 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D PKF023_09710 tesA; arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D PKF023_15860 aminotransferase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D PKF023_00290 fatty acid desaturase K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45]
D PKF023_11040 acsA; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PKF023_10210 prpE; propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D PKF023_09150 fadD; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PKF023_04450 plsX; phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D PKF023_03060 plsY; glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D PKF023_09170 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PKF023_17200 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:pyt01006]
D PKF023_15540 (2E,6E)-farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D PKF023_02020 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D PKF023_05670 uppS; isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D PKF023_16070 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PKF023_16330 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D PKF023_17850 ctaB; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:pyt01007]
D PKF023_09810 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PKF023_15720 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PKF023_13150 gluQ; glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D PKF023_17350 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PKF023_08750 trpS-1; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PKF023_08880 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PKF023_18310 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PKF023_12770 hypothetical protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PKF023_15900 ileS1; isoleucine--tRNA ligase 1 K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PKF023_15660 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PKF023_02410 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PKF023_05420 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PKF023_17460 aspS; aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PKF023_07320 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PKF023_17170 glyQ; glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PKF023_17180 glyS; glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PKF023_12290 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PKF023_02090 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PKF023_08590 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PKF023_15690 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PKF023_08630 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PKF023_08640 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PKF023_04850 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D PKF023_05010 tyrB-2; aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PKF023_07900 aminotransferase K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D PKF023_01040 hisC1; histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PKF023_14400 hisC2; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PKF023_01600 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D PKF023_11230 aspartate aminotransferase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D PKF023_15750 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PKF023_01610 bioA; adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D PKF023_02480 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D PKF023_16620 ilvE; branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PKF023_03520 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PKF023_07830 para-aminobenzoate synthase K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D PKF023_13180 serine--glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D PKF023_14420 serC-1; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:pyt00194]
D PKF023_00240 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PKF023_00230 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PKF023_00220 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PKF023_00210 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PKF023_00200 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D PKF023_00190 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PKF023_00180 atpE; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D PKF023_00170 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:pyt03000]
D PKF023_13920 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D PKF023_06460 estR; LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D PKF023_13010 hypothetical protein K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D PKF023_12950 LysR family transcriptional regulator K13928 mdcR; LysR family transcriptional regulator, malonate utilization transcriptional regulator
D PKF023_13580 ttdR; LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D PKF023_07950 hypothetical protein K03710 K03710; GntR family transcriptional regulator
D PKF023_18650 slmA; nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D PKF023_02380 fur; transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PKF023_14780 btr; transcriptional regulatory protein btr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D PKF023_05030 iscR; Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D PKF023_11610 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D PKF023_17300 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D PKF023_02930 transcriptional regulator K07726 K07726; putative transcriptional regulator
D PKF023_09990 hypothetical protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D PKF023_00150 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PKF023_16190 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D PKF023_02540 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D PKF023_02520 UPF0301 protein K07735 algH; putative transcriptional regulator
D PKF023_18670 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D PKF023_02920 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D PKF023_01640 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:pyt03021]
D PKF023_00750 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PKF023_00430 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PKF023_00440 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PKF023_10770 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D PKF023_15470 hypothetical protein K03086 rpoD; RNA polymerase primary sigma factor
D PKF023_10640 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D PKF023_17830 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D PKF023_11670 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D PKF023_02740 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D PKF023_00380 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D PKF023_01330 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D PKF023_01340 hypothetical protein K03600 sspB; stringent starvation protein B
D PKF023_11340 hypothetical protein K17763 rsbR; rsbT co-antagonist protein RsbR
D PKF023_18670 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D PKF023_10180 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D PKF023_10750 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D PKF023_07020 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:pyt03019]
D PKF023_04370 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D PKF023_13090 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D PKF023_04540 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PKF023_07500 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D PKF023_14120 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D PKF023_06770 rhlE1; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D PKF023_13160 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D PKF023_09780 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PKF023_10550 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PKF023_07020 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D PKF023_16160 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PKF023_16490 groL1; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PKF023_07360 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D PKF023_12110 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D PKF023_12120 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D PKF023_16120 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D PKF023_02080 hypothetical protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D PKF023_17690 nucleotide-binding protein K06958 rapZ; RNase adapter protein RapZ
D PKF023_07570 hrpA; ATP-dependent helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:pyt03011]
D PKF023_14360 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D PKF023_05630 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D PKF023_00560 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D PKF023_00740 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D PKF023_00670 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D PKF023_04680 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D PKF023_00460 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D PKF023_00640 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D PKF023_17390 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D PKF023_00490 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D PKF023_00730 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PKF023_00450 hypothetical protein K02950 RP-S12; small subunit ribosomal protein S12
D PKF023_00720 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D PKF023_00630 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D PKF023_10560 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D PKF023_14200 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D PKF023_00590 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D PKF023_04700 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D PKF023_00540 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D PKF023_16030 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D PKF023_15500 rpsU2; 30S ribosomal protein S21 B K02970 RP-S21; small subunit ribosomal protein S21
D PKF023_00400 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D PKF023_00530 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D PKF023_00500 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D PKF023_00510 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D PKF023_00620 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D PKF023_00650 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D PKF023_04710 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D PKF023_00410 hypothetical protein K02864 RP-L10; large subunit ribosomal protein L10
D PKF023_00390 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D PKF023_00420 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D PKF023_17400 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D PKF023_00600 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D PKF023_00690 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D PKF023_00570 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D PKF023_00760 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D PKF023_00660 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D PKF023_14170 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D PKF023_08620 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D PKF023_02030 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D PKF023_00550 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D PKF023_00520 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D PKF023_00610 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D PKF023_02040 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D PKF023_15840 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D PKF023_00580 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D PKF023_00680 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D PKF023_07010 rpmE2; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31
D PKF023_04440 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D PKF023_15850 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D PKF023_08610 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D PKF023_17750 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D PKF023_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PKF023_r00010 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PKF023_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:pyt03009]
D PKF023_04540 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PKF023_14120 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D PKF023_04550 era; GTPase Era K03595 era; GTPase
D PKF023_02050 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
D PKF023_18670 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D PKF023_11670 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D PKF023_02740 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D PKF023_00380 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D PKF023_04210 rsuA; pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D PKF023_17210 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D PKF023_15870 SAM-dependent methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D PKF023_19070 ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D PKF023_17790 hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D PKF023_02350 ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D PKF023_00130 gidB; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PKF023_01650 rsmH; ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D PKF023_00310 rsmI; ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D PKF023_04410 hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D PKF023_07510 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D PKF023_10160 rlmE; ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D PKF023_13070 rlmH; ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D PKF023_05990 rlmJ; ribosomal RNA large subunit methyltransferase J K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D PKF023_02460 RNA methyltransferase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D PKF023_07300 rlmN; dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D PKF023_07270 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D PKF023_11570 hypothetical protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PKF023_11690 hypothetical protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D PKF023_04380 rluC; pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D PKF023_09550 rluD; pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D PKF023_18880 RNA pseudouridylate synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D PKF023_09500 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D PKF023_14190 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D PKF023_09600 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D PKF023_15260 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D PKF023_02170 hypothetical protein K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D PKF023_05540 prmB; 50S ribosomal protein L3 glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D PKF023_08800 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D PKF023_04370 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D PKF023_13090 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D PKF023_02530 putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D PKF023_14140 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D PKF023_07350 der; GTPase Der K03977 engA; GTPase
D PKF023_07370 hflX; GTPase HflX K03665 hflX; GTPase
D PKF023_16550 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PKF023_10760 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D PKF023_11650 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D PKF023_11680 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D PKF023_13060 rsfS; ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
D PKF023_17140 ybeY; endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor
D PKF023_10170 hypothetical protein K07574 yhbY; RNA-binding protein
D PKF023_03900 hypothetical protein K09889 yjgA; ribosome-associated protein
D PKF023_17660 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D PKF023_01470 ychF; ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:pyt03016]
D PKF023_18500 cca; multifunctional CCA protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D PKF023_09810 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PKF023_02090 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PKF023_15900 ileS1; isoleucine--tRNA ligase 1 K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PKF023_02410 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PKF023_12770 hypothetical protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PKF023_15720 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PKF023_18310 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PKF023_05420 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PKF023_17460 aspS; aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PKF023_15690 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PKF023_08590 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PKF023_12290 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PKF023_08880 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PKF023_15660 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PKF023_07320 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PKF023_08630 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PKF023_08640 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PKF023_17350 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PKF023_08750 trpS-1; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PKF023_01130 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D PKF023_02720 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D PKF023_08080 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PKF023_11640 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PKF023_05040 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PKF023_16550 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PKF023_16070 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PKF023_19140 trmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D PKF023_00120 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PKF023_06760 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D PKF023_10800 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D PKF023_02240 exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D PKF023_17170 glyQ; glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PKF023_17180 glyS; glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PKF023_13150 gluQ; glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D PKF023_05960 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D PKF023_11530 dusA; tRNA-dihydrouridine(20/20a) synthase K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D PKF023_17290 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D PKF023_17130 miaB; tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D PKF023_08830 trmJ; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D PKF023_14180 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PKF023_17970 trmL; tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D PKF023_05780 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
D PKF023_11570 hypothetical protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PKF023_16430 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PKF023_18460 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D PKF023_15680 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D PKF023_05060 iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D PKF023_09930 folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D PKF023_16350 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D PKF023_02840 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D PKF023_05950 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PKF023_05940 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PKF023_17560 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D PKF023_13230 queG; epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D PKF023_08470 tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D PKF023_16360 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D PKF023_15510 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D PKF023_13240 bifunctional tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE/phosphotransferase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D PKF023_12610 tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D PKF023_07500 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D PKF023_10550 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PKF023_12340 vapC; ribonuclease VapC K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C 03012 Translation factors [BR:pyt03012]
D PKF023_11660 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D PKF023_08600 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D PKF023_05640 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D PKF023_00360 tuf_1; elongation factor Tu K02358 tuf; elongation factor Tu
D PKF023_00480 tuf_2; elongation factor Tu K02358 tuf; elongation factor Tu
D PKF023_00470 fusA; elongation factor G K02355 fusA; elongation factor G
D PKF023_01410 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D PKF023_05660 frr; ribosome-recycling factor K02838 frr; ribosome recycling factor
D PKF023_01400 hemK; release factor glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D PKF023_17760 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D PKF023_00710 infA_1; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D PKF023_13630 infA_2; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D PKF023_04610 efp; elongation factor P K02356 efp; elongation factor P
D PKF023_05430 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D PKF023_18890 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:pyt03110]
D PKF023_15950 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D PKF023_04930 clpB; chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D PKF023_09680 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D PKF023_15430 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D PKF023_16160 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PKF023_05080 hscA; chaperone protein HscA K04044 hscA; molecular chaperone HscA
D PKF023_16490 groL1; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PKF023_16150 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D PKF023_11920 cbpA; curved DNA-binding protein K05516 cbpA; curved DNA-binding protein
D PKF023_05070 hscB; co-chaperone protein HscB K04082 hscB; molecular chaperone HscB
D PKF023_09800 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33
D PKF023_16170 grpE; protein GrpE K03687 GRPE; molecular chaperone GrpE
D PKF023_15450 heat-shock protein Hsp20 K04080 ibpA; molecular chaperone IbpA
D PKF023_16500 groES-1; 10 kDa chaperonin K04078 groES; chaperonin GroES
D PKF023_04510 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D PKF023_10150 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PKF023_00170 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PKF023_17990 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D PKF023_12440 hypothetical protein K09796 pccA; periplasmic copper chaperone A
D PKF023_07840 ppiA; peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D PKF023_08860 ppiB; peptidyl-prolyl cis-trans isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D PKF023_04110 fkpA; peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D PKF023_15820 peptidyl-prolyl cis-trans isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D PKF023_08810 FKBP-type peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D PKF023_10000 peptidylprolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D PKF023_07030 trxA; thioredoxin K03671 TXN; thioredoxin
D PKF023_13450 thiol reductase thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D PKF023_18000 grx3; glutaredoxin K03676 grxC; glutaredoxin 3
D PKF023_01390 glutaredoxin K07390 grxD; monothiol glutaredoxin
D PKF023_18290 dsbA; thiol:disulfide interchange protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D PKF023_01450 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D PKF023_14960 ccmG; thiol:disulfide interchange protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:pyt04131]
D PKF023_07290 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PKF023_12580 UPF0016 family membrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D PKF023_02370 hexC; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PKF023_18020 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PKF023_16600 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PKF023_15430 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:pyt03051]
D PKF023_15430 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:pyt03032]
D PKF023_10260 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D PKF023_18790 hupB; DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta
D PKF023_08650 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D PKF023_14350 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D PKF023_04720 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PKF023_15480 hypothetical protein K02316 dnaG; DNA primase [EC:2.7.7.101]
D PKF023_17570 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D PKF023_13140 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PKF023_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PKF023_12970 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PKF023_02430 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PKF023_10290 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PKF023_15300 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PKF023_07150 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PKF023_05770 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D PKF023_15610 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PKF023_05590 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PKF023_16100 DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D PKF023_14430 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PKF023_00030 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PKF023_09350 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D PKF023_09340 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D PKF023_19120 topB; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:pyt03036]
D PKF023_04540 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PKF023_08680 H-NS histone K03746 hns; DNA-binding protein H-NS
D PKF023_18790 hupB; DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta
D PKF023_08650 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D PKF023_14350 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D PKF023_11920 cbpA; curved DNA-binding protein K05516 cbpA; curved DNA-binding protein
D PKF023_11930 cbpM; chaperone modulatory protein CbpM K18997 cbpM; chaperone modulatory protein CbpM
D PKF023_17300 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D PKF023_07360 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D PKF023_05570 smc; chromosome partition protein Smc K03529 smc; chromosome segregation protein
D PKF023_12790 scpA; segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D PKF023_11700 hypothetical protein K06024 scpB; segregation and condensation protein B
D PKF023_01770 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D PKF023_09790 hypothetical protein K05589 ftsB; cell division protein FtsB
D PKF023_01670 ftsI; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PKF023_12310 ftsK; DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D PKF023_01660 hypothetical protein K03586 ftsL; cell division protein FtsL
D PKF023_01760 ftsQ; cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D PKF023_01720 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D PKF023_01780 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D PKF023_12900 hypothetical protein K09888 zapA; cell division protein ZapA
D PKF023_01900 zapD; cell division protein ZapD K18778 zapD; cell division protein ZapD
D PKF023_08730 cell division protein ZapE K06916 zapE; cell division protein ZapE
D PKF023_13250 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PKF023_18420 MexH family multidrug efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PKF023_18650 slmA; nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D PKF023_18740 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D PKF023_18750 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D PKF023_18760 rod shape-determining protein K03571 mreD; rod shape-determining protein MreD
D PKF023_18780 mrdB; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D PKF023_00140 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D PKF023_00150 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PKF023_09350 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D PKF023_09340 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D PKF023_00120 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PKF023_00130 gidB; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PKF023_18690 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D PKF023_03050 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D PKF023_16850 hypothetical protein K04763 xerD; integrase/recombinase XerD
D PKF023_06090 iron-sulfur cluster carrier protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D PKF023_00800 engB; putative GTP-binding protein EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:pyt03400]
D PKF023_01960 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D PKF023_02500 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D PKF023_01430 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D PKF023_17700 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D PKF023_04980 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D PKF023_01890 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PKF023_15930 dnaS; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D PKF023_13990 cryptochrome/photolyase family protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D PKF023_08890 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D PKF023_17710 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PKF023_07660 xth-2; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PKF023_18610 xth-1; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PKF023_05440 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D PKF023_05590 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PKF023_15610 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PKF023_17590 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D PKF023_05020 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D PKF023_04630 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D PKF023_15650 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PKF023_00430 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PKF023_00440 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PKF023_00750 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PKF023_10770 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D PKF023_09630 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D PKF023_03010 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D PKF023_15550 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D PKF023_07110 exoX; DNA exonuclease K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D PKF023_13140 dnaE; DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PKF023_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PKF023_12970 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PKF023_02430 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PKF023_10290 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PKF023_15300 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PKF023_07150 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PKF023_17570 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D PKF023_16750 recA; protein RecA K03553 recA; recombination protein RecA
D PKF023_17330 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D PKF023_17340 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D PKF023_17320 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PKF023_00260 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D PKF023_04690 priB; primosomal replication protein N K02686 priB; primosomal replication protein N
D PKF023_05530 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D PKF023_16340 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D PKF023_04560 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D PKF023_07170 recR; recombination protein RecR K06187 recR; recombination protein RecR
D PKF023_16210 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D PKF023_14430 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PKF023_00030 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PKF023_18790 hupB; DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta
D PKF023_17300 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D PKF023_08650 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D PKF023_14350 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D PKF023_08680 H-NS histone K03746 hns; DNA-binding protein H-NS
D PKF023_07090 umuC; DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V
D PKF023_07080 umuD; SOS response transcriptional regulator K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D PKF023_04660 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D PKF023_16740 hypothetical protein K03565 recX; regulatory protein
D PKF023_02130 nrdA; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PKF023_02140 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:pyt03029]
D PKF023_01310 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D PKF023_11660 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D PKF023_08600 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D PKF023_05640 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D PKF023_00360 tuf_1; elongation factor Tu K02358 tuf; elongation factor Tu
D PKF023_00480 tuf_2; elongation factor Tu K02358 tuf; elongation factor Tu
D PKF023_00470 fusA; elongation factor G K02355 fusA; elongation factor G
D PKF023_04550 era; GTPase Era K03595 era; GTPase
D PKF023_17350 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PKF023_02410 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PKF023_17460 aspS; aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PKF023_18310 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PKF023_18720 gatA; glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PKF023_18710 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D PKF023_18730 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D PKF023_04090 hypothetical protein K01173 ENDOG; endonuclease G, mitochondrial
D PKF023_17570 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D PKF023_05710 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D PKF023_16160 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PKF023_16170 grpE; protein GrpE K03687 GRPE; molecular chaperone GrpE
D PKF023_16490 groL1; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PKF023_16500 groES-1; 10 kDa chaperonin K04078 groES; chaperonin GroES
D PKF023_16150 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D PKF023_05040 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PKF023_05070 hscB; co-chaperone protein HscB K04082 hscB; molecular chaperone HscB
D PKF023_01390 glutaredoxin K07390 grxD; monothiol glutaredoxin
D PKF023_06090 iron-sulfur cluster carrier protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D PKF023_17850 ctaB; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D PKF023_17920 cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D PKF023_17860 cytochrome c oxidase subunit I K02259 COX15; heme a synthase [EC:1.17.99.9]
D PKF023_19150 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PKF023_17840 lipoprotein K07152 SCO1; protein SCO1
D PKF023_15430 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:pyt02000]
D PKF023_13100 msbA; lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D PKF023_17440 metal ABC transporter permease K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D PKF023_12530 ABC transporter K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D PKF023_11470 hypothetical protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D PKF023_11940 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D PKF023_08300 modB; molybdenum ABC transporter permease subunit K02018 modB; molybdate transport system permease protein
D PKF023_06820 tungsten ABC transporter substrate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D PKF023_06210 ABC transporter permease K05773 tupB; tungstate transport system permease protein
D PKF023_05360 hypothetical protein K15554 ssuC; sulfonate transport system permease protein
D PKF023_05370 nitrate ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D PKF023_00940 outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D PKF023_00930 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D PKF023_10740 glycoprotein endopeptidase metalloprotease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D PKF023_00920 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D PKF023_10730 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D PKF023_00960 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein
D PKF023_00970 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein
D PKF023_12260 pstS; phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D PKF023_12250 pstC; phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein
D PKF023_12240 pstA; phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D PKF023_12230 pstB; phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D PKF023_01230 gltI; amino acid ABC transporter substrate-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D PKF023_01250 glutamate/aspartate transporter permease GltK K10002 gltK; glutamate/aspartate transport system permease protein
D PKF023_01240 glutamate ABC transporter permease K10003 gltJ; glutamate/aspartate transport system permease protein
D PKF023_01260 amino acid ABC transporter ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D PKF023_00080 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PKF023_03950 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PKF023_06320 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PKF023_15800 branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PKF023_00090 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D PKF023_03960 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D PKF023_06310 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D PKF023_15790 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D PKF023_00100 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D PKF023_03970 hypothetical protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PKF023_06300 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D PKF023_15780 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D PKF023_00060 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PKF023_06290 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PKF023_15770 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PKF023_00070 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PKF023_03980 livF; ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PKF023_06280 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PKF023_15760 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PKF023_06600 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PKF023_11760 ABC transporter substrate-binding protein K13893 yejA; microcin C transport system substrate-binding protein
D PKF023_11750 microcin C ABC transporter permease YejB K13894 yejB; microcin C transport system permease protein
D PKF023_11740 ABC transporter permease K13895 yejE; microcin C transport system permease protein
D PKF023_11730 ABC transporter ATP-binding protein K13896 yejF; microcin C transport system ATP-binding protein
D PKF023_03220 transport permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D PKF023_03350 xapG; transport permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D PKF023_03230 sugar ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D PKF023_03360 xapH; ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D PKF023_12990 LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D PKF023_13000 LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D PKF023_17650 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D PKF023_05460 lipoprotein releasing system protein K09808 lolC_E; lipoprotein-releasing system permease protein
D PKF023_05470 lolD; lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D PKF023_14990 hypothetical protein K02196 ccmD; heme exporter protein D
D PKF023_15000 ccmC; heme export protein K02195 ccmC; heme exporter protein C
D PKF023_15010 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B
D PKF023_15020 ccmA; cytochrome c biogenesis ATP-binding export protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D PKF023_00990 transport permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D PKF023_00980 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PKF023_10680 inner membrane transport permease K02004 ABC.CD.P; putative ABC transport system permease protein
D PKF023_09720 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PKF023_06990 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump
D PKF023_10010 MFS transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D PKF023_09520 lysophospholipid transporter LplT K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D PKF023_18620 MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D PKF023_18050 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D PKF023_18060 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D PKF023_18070 PTS mannose transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D PKF023_17670 ptsN; PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D PKF023_12740 inward rectifier potassium channel protein K08715 IRPC; inward rectifier potassium channel
D PKF023_17070 ammonium transporter K03320 amt; ammonium transporter, Amt family
D PKF023_18100 amt; ammonium transporter K03320 amt; ammonium transporter, Amt family
D PKF023_16420 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PKF023_18400 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PKF023_01330 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D PKF023_07280 BAX inhibitor protein K19416 yccA; modulator of FtsH protease
D PKF023_01290 mscL; large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D PKF023_03000 biopolymer transporter K03561 exbB; biopolymer transport protein ExbB
D PKF023_11080 transporter MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB
D PKF023_02990 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D PKF023_11090 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D PKF023_02900 tolQ; TolQ transport protein K03562 tolQ; biopolymer transport protein TolQ
D PKF023_02890 tolR; protein TolR K03560 tolR; biopolymer transport protein TolR
D PKF023_02290 corA; magnesium transport protein CorA K03284 corA; magnesium transporter
D PKF023_14580 crcB; putative fluoride ion transporter CrcB K06199 crcB; fluoride exporter
D PKF023_01950 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PKF023_07190 hypothetical protein K16080 mnoP; high affinity Mn2+ porin
D PKF023_14440 ompA; membrane protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D PKF023_10120 phuR; ligand-gated channel K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PKF023_13890 hypothetical protein K15725 czcC; outer membrane protein, heavy metal efflux system
D PKF023_05710 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D PKF023_07340 bamB; outer membrane protein assembly factor BamB K17713 bamB; outer membrane protein assembly factor BamB
D PKF023_08780 lipoprotein K07287 bamC; outer membrane protein assembly factor BamC
D PKF023_09540 comL; outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD
D PKF023_17630 LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC
D PKF023_17150 corC; cation transporter K06189 corC; hemolysin (HlyC) family protein
D PKF023_15580 hypothetical protein K16267 zipB; zinc and cadmium transporter
D PKF023_07220 cation transporter K15726 czcA; heavy metal efflux system protein
D PKF023_13870 cytochrome-c peroxidase K15726 czcA; heavy metal efflux system protein
D PKF023_18410 acriflavine resistance protein B K18138 acrB; multidrug efflux pump
D PKF023_13670 emrE; multidrug transporter K03297 emrE; small multidrug resistance pump
D PKF023_03940 membrane protein K15268 eamA; O-acetylserine/cysteine efflux transporter
D PKF023_03740 ionic antiporter K07300 chaA; Ca2+:H+ antiporter
D PKF023_18870 dctA; C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein
D PKF023_17600 sodium/hydrogen exchanger family protein K03455 KEA1_2_3; K+:H+ antiporter
D PKF023_11780 chrA1_1; chromate transporter K07240 chrA; chromate transporter
D PKF023_14550 chromate transporter K07240 chrA; chromate transporter
D PKF023_14560 chrA1_2; chromate transporter K07240 chrA; chromate transporter
D PKF023_14760 sodium-independent anion transporter K03321 TC.SULP; sulfate permease, SulP family
D PKF023_11590 arsB; arsenical-resistance protein K03325 ACR3; arsenite transporter
D PKF023_16040 putative lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D PKF023_17050 hypothetical protein K13936 mdcF; malonate transporter and related proteins
D PKF023_05510 kup; putative potassium transport system protein kup K03549 kup; KUP system potassium uptake protein
D PKF023_12650 putative membrane protein K11250 leuE; leucine efflux protein
D PKF023_12490 tricarboxylate transporter K07793 tctA; putative tricarboxylic transport membrane protein
D PKF023_15710 membrane protein K07793 tctA; putative tricarboxylic transport membrane protein
D PKF023_12500 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein
D PKF023_15700 membrane protein K07794 tctB; putative tricarboxylic transport membrane protein
D PKF023_12510 tricarboxylate transporter K07795 tctC; putative tricarboxylic transport membrane protein
D PKF023_07060 C4-dicarboxylate ABC transporter substrate-binding protein K07795 tctC; putative tricarboxylic transport membrane protein
D PKF023_08490 transporter K09125 yhhQ; queuosine precursor transporter
D PKF023_01720 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D PKF023_12580 UPF0016 family membrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D PKF023_06890 membrane protein K15383 K15383; MtN3 and saliva related transmembrane protein
D PKF023_02860 peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D PKF023_02870 tolB; protein TolB K03641 tolB; TolB protein
D PKF023_12370 hppA; K(+)-insensitive pyrophosphate-energized proton pump K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D PKF023_13880 hypothetical protein K15727 czcB; membrane fusion protein, heavy metal efflux system
D PKF023_11460 secretion protein HlyD K12542 lapC; membrane fusion protein, adhesin transport system
D PKF023_18420 MexH family multidrug efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PKF023_06850 hypothetical protein K04758 feoA; ferrous iron transport protein A
D PKF023_06860 feoB; ferrous iron transporter B K04759 feoB; ferrous iron transport protein B
D PKF023_14970 ccmF; c-type cytochrome biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D PKF023_12180 methyltransferase K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:pyt02044]
D PKF023_11470 hypothetical protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D PKF023_11460 secretion protein HlyD K12542 lapC; membrane fusion protein, adhesin transport system
D PKF023_03690 gspG; type II secretion system protein GspG K02456 gspG; general secretion pathway protein G
D PKF023_01920 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PKF023_16700 general secretion pathway protein GspH K02650 pilA; type IV pilus assembly protein PilA
D PKF023_00860 hypothetical protein K02666 pilQ; type IV pilus assembly protein PilQ
D PKF023_01940 hypothetical protein K02504 hofB; protein transport protein HofB
D PKF023_14300 hypothetical protein K02237 comEA; competence protein ComEA
D PKF023_01450 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D PKF023_01820 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PKF023_17990 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D PKF023_16380 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D PKF023_00370 secE; protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D PKF023_16390 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D PKF023_10520 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D PKF023_00700 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D PKF023_02100 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PKF023_17820 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D PKF023_16370 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D PKF023_19150 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PKF023_01140 tatE; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D PKF023_01150 tatB; sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D PKF023_01160 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:pyt02042]
D PKF023_01950 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:pyt02022]
D PKF023_12200 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D PKF023_12210 phoB; DNA-binding response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D PKF023_16520 putative transcriptional regulator K07690 evgA; two-component system, NarL family, response regulator EvgA
D PKF023_07640 glnL; nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D PKF023_07650 ntrC; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D PKF023_19050 PAS domain-containing sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D PKF023_19040 two-component system response regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
C 02035 Bacterial motility proteins [BR:pyt02035]
D PKF023_16700 general secretion pathway protein GspH K02650 pilA; type IV pilus assembly protein PilA
D PKF023_01920 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PKF023_00860 hypothetical protein K02666 pilQ; type IV pilus assembly protein PilQ
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:pyt04812]
D PKF023_18740 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D PKF023_01780 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D PKF023_01770 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D PKF023_00140 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D PKF023_00150 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:pyt04147]
D PKF023_15430 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D PKF023_09780 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PKF023_02370 hexC; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PKF023_16610 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D PKF023_16600 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PKF023_07840 ppiA; peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D PKF023_16490 groL1; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PKF023_16160 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PKF023_10910 pgi1; glucose-6-phosphate isomerase 1 K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PKF023_05880 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PKF023_00360 tuf_1; elongation factor Tu K02358 tuf; elongation factor Tu
D PKF023_00480 tuf_2; elongation factor Tu K02358 tuf; elongation factor Tu
D PKF023_01130 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D PKF023_09150 fadD; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PKF023_09610 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PKF023_18550 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D PKF023_02950 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D PKF023_09050 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D PKF023_12700 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PKF023_16000 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PKF023_12560 fbp; fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PKF023_00790 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D PKF023_04220 phhB; putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D PKF023_17310 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PKF023_14130 peptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D PKF023_07740 lpd; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_08720 odhL; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PKF023_14240 etfA; electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit
D PKF023_13330 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D PKF023_10530 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PKF023_18020 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PKF023_04170 blc; hypothetical protein K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:pyt02048]
D PKF023_10970 hypothetical protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D PKF023_10980 chpR; antitoxin MazE K07172 mazE; antitoxin MazE
D PKF023_12270 hypothetical protein K07172 mazE; antitoxin MazE
D PKF023_12340 vapC; ribonuclease VapC K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D PKF023_12350 antitoxin K18829 mvpT; antitoxin VapB
D PKF023_01780 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D PKF023_18740 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D PKF023_09350 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D PKF023_09340 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D PKF023_09810 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PKF023_08000 succinate dehydrogenase assembly factor 2 K09159 cptB; antitoxin CptB
D PKF023_05040 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:pyt01504]
D PKF023_18420 MexH family multidrug efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PKF023_18410 acriflavine resistance protein B K18138 acrB; multidrug efflux pump
D PKF023_16520 putative transcriptional regulator K07690 evgA; two-component system, NarL family, response regulator EvgA
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:pyt03100]
D PKF023_t00200 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PKF023_t00260 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PKF023_t00160 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PKF023_t00210 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PKF023_t00320 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PKF023_t00250 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PKF023_t00110 tRNA-Met K14230 tRNA-Met; tRNA Met
D PKF023_t00370 tRNA-Met K14230 tRNA-Met; tRNA Met
D PKF023_r00010 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PKF023_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PKF023_r00030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D PKF023_12640 aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D PKF023_06390 oxidoreductase K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D PKF023_06380 cutM; molybdopterin dehydrogenase K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3]
D PKF023_11200 (2Fe-2S)-binding protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D PKF023_11190 aldehyde dehydrogenase K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D PKF023_08540 dehydrogenase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D PKF023_10540 oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D PKF023_15070 qor; quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D PKF023_15210 ahpF; alkyl hydroperoxide reductase subunit F K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D PKF023_12630 msrA; peptide methionine sulfoxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D PKF023_09970 msrB; peptide methionine sulfoxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D PKF023_07890 thiol:disulfide oxidoreductase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D PKF023_04160 msrP; protein-methionine-sulfoxide reductase catalytic subunit MsrP K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D PKF023_04760 bcp; peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D PKF023_15200 ahpC; alkyl hydroperoxide reductase subunit C K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D PKF023_11900 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D PKF023_14500 quercetin 2,3-dioxygenase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D PKF023_06780 hypothetical protein K24700 mdo; 3-mercaptopropionate dioxygenase [EC:1.13.11.91]
D PKF023_05400 fpr; ferredoxin--NADP(+) reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D PKF023_11600 protein-tyrosine-phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D PKF023_07240 hypothetical protein K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D PKF023_18270 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D PKF023_07810 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D PKF023_07800 ate; putative arginyl-tRNA--protein transferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D PKF023_12960 umpA; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D PKF023_05790 putative phosphoenolpyruvate synthase regulatory protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D PKF023_16220 glnE; glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D PKF023_09960 UPF0061 protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D PKF023_17680 hprK; HPr kinase/phosphorylase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D PKF023_13820 CoA transferase K18313 sct; succinyl-CoA---D-citramalate CoA-transferase [EC:2.8.3.20]
D PKF023_16930 thioesterase K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29]
D PKF023_08460 thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D PKF023_08740 phosphatase K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D PKF023_11350 two-component system response regulator K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D PKF023_11540 hypothetical protein K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D PKF023_10860 MBL fold metallo-hydrolase K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21]
D PKF023_05480 deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D PKF023_09890 deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D PKF023_19100 def-1; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D PKF023_16240 hydrolase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D PKF023_04420 Maf-like protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D PKF023_11910 dehydratase K26399 K26399; arabinonate dehydratase [EC:4.2.1.5]
D PKF023_06580 hypothetical protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D PKF023_12540 cphA_1; cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D PKF023_12550 cphA_2; cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D PKF023_02220 mpl; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D PKF023_04990 hypothetical protein K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D PKF023_14860 cation-transporting P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D PKF023_12760 fdhD; sulfurtransferase FdhD K02379 fdhD; FdhD protein
D PKF023_04310 ferredoxin K05524 fdxA; ferredoxin
D PKF023_05050 iscU; iron-sulfur cluster assembly scaffold protein IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D PKF023_14250 etfB; electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D PKF023_16310 YggS family pyridoxal phosphate enzyme K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D PKF023_14340 lapB; lipopolysaccharide assembly protein B K19804 lapB; lipopolysaccharide assembly protein B
C 99987 Cofactor metabolism
D PKF023_17480 ubiB; putative protein kinase UbiB K03688 ubiB; ubiquinone biosynthesis protein
D PKF023_18130 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
C 99988 Secondary metabolism
C 99999 Others
D PKF023_15040 membrane protein K15977 K15977; putative oxidoreductase
D PKF023_14070 carboxylesterase K06999 K06999; phospholipase/carboxylesterase
D PKF023_16910 hypothetical protein K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D PKF023_13640 cold-shock protein K03704 cspA; cold shock protein
D PKF023_15970 cold-shock protein K03704 cspA; cold shock protein
D PKF023_18110 nitrogen regulatory protein P-II 1 K04752 glnK; nitrogen regulatory protein P-II 2
D PKF023_11620 RNA-binding transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
D PKF023_06590 MBL fold metallo-hydrolase K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D PKF023_15960 clpS; ATP-dependent Clp protease adapter protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D PKF023_09660 tig; trigger factor K03545 tig; trigger factor
D PKF023_05850 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D PKF023_05810 peptidase K07395 K07395; putative proteasome-type protease
D PKF023_17100 hypothetical protein K07397 yhfA; putative redox protein
D PKF023_17410 peroxiredoxin K07397 yhfA; putative redox protein
D PKF023_09360 hypothetical protein K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D PKF023_15830 hypothetical protein K03630 radC; DNA repair protein RadC
D PKF023_01380 hypothetical protein K09760 rmuC; DNA recombination protein RmuC
D PKF023_04920 UPF0213 protein K07461 K07461; putative endonuclease
D PKF023_19110 hypothetical protein K04096 smf; DNA processing protein
D PKF023_07860 recombination factor protein RarA K07478 ycaJ; putative ATPase
D PKF023_07260 hypothetical protein K07501 K07501; 3'-5' exonuclease
D PKF023_00890 hypothetical protein K07491 rayT; REP-associated tyrosine transposase
C 99979 Viral proteins
C 99998 Others
D PKF023_07160 nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC
D PKF023_15290 cry1; cryptochrome DASH K25656 cry; cryptochrome
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D PKF023_12600 amino acid permease K03293 TC.AAT; amino acid transporter, AAT family
D PKF023_10280 multidrug transporter K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D PKF023_06080 inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D PKF023_01980 cht1; sodium:solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
C 99978 Cell growth
D PKF023_09980 putative intracellular septation protein A K06190 ispZ; intracellular septation protein
C 99993 Cell motility
D PKF023_06970 penicillin-binding protein activator LpoB K07337 K07337; penicillin-binding protein activator
C 99995 Signaling proteins
D PKF023_11630 typA; GTP-binding protein K06207 typA; GTP-binding protein
D PKF023_04750 hypothetical protein K07175 phoH2; PhoH-like ATPase
D PKF023_03040 UPF0234 protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D PKF023_12300 lolA; outer-membrane lipoprotein carrier protein K03634 lolA; outer membrane lipoprotein carrier protein
D PKF023_00950 hypothetical protein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D PKF023_05720 outer membrane protein chaperone K06142 hlpA; outer membrane protein
D PKF023_07250 peptidase K06194 nlpD; lipoprotein NlpD
D PKF023_11960 outer membrane protein K07275 ompW; outer membrane protein
D PKF023_14980 ccmE; cytochrome c-type biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D PKF023_14950 cycL; cytochrome c biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
C 99994 Others
D PKF023_12220 phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D PKF023_00770 cutA; divalent-cation tolerance protein CutA K03926 cutA; periplasmic divalent cation tolerance protein
D PKF023_01540 apaG; protein ApaG K06195 apaG; ApaG protein
D PKF023_00830 cyaY; protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY
B
B 09194 Poorly characterized
C 99996 General function prediction only
D PKF023_06670 globin K06886 glbN; hemoglobin
D PKF023_11710 exported phospholipase K07001 K07001; NTE family protein
D PKF023_17370 erpA; putative iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D PKF023_10040 hypothetical protein K07058 K07058; membrane protein
D PKF023_14530 UPF0176 protein K07146 K07146; UPF0176 protein
D PKF023_13170 hypothetical protein K11477 glcG; glc operon protein GlcG
D PKF023_12030 hypothetical protein K03745 slyX; SlyX protein
D PKF023_16060 dedA; hypothetical protein K03975 dedA; membrane-associated protein
D PKF023_12040 membrane protein K08972 K08972; putative membrane protein
D PKF023_12060 alkylphosphonate utilization protein K06193 phnA; protein PhnA
C 99997 Function unknown
D PKF023_09880 hypothetical protein K06867 K06867; uncharacterized protein
D PKF023_01880 hypothetical protein K06923 K06923; uncharacterized protein
D PKF023_08510 hypothetical protein K06938 K06938; uncharacterized protein
D PKF023_09840 esterase K07000 K07000; uncharacterized protein
D PKF023_18180 hypothetical protein K07018 K07018; uncharacterized protein
D PKF023_14690 C4-dicarboxylate ABC transporter substrate-binding protein K07080 K07080; uncharacterized protein
D PKF023_13930 sodium-dependent bicarbonate transport family permease K07086 K07086; uncharacterized protein
D PKF023_00110 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein
D PKF023_04000 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein
D PKF023_12910 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein
D PKF023_18970 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein
D PKF023_14080 UPF0721 transmembrane protein K07090 K07090; uncharacterized protein
D PKF023_08420 membrane protein K07112 K07112; uncharacterized protein
D PKF023_08430 membrane protein K07112 K07112; uncharacterized protein
D PKF023_08440 membrane protein K07112 K07112; uncharacterized protein
D PKF023_08230 hypothetical protein K07112 K07112; uncharacterized protein
D PKF023_00040 SET domain-containing protein-lysine N-methyltransferase K07117 K07117; uncharacterized protein
D PKF023_18980 membrane protein K07136 K07136; uncharacterized protein
D PKF023_11980 hypothetical protein K07137 K07137; uncharacterized protein
D PKF023_15330 peptidase S16 K07157 K07157; uncharacterized protein
D PKF023_15980 hypothetical protein K09005 K09005; uncharacterized protein
D PKF023_15490 aspartyl-tRNA amidotransferase subunit B K09117 K09117; uncharacterized protein
D PKF023_18170 UPF0250 protein K09158 K09158; uncharacterized protein
D PKF023_06370 hypothetical protein K09386 K09386; uncharacterized protein
D PKF023_18260 DUF1365 domain-containing protein K09701 K09701; uncharacterized protein
D PKF023_11030 hypothetical protein K09780 K09780; uncharacterized protein
D PKF023_02970 UPF0434 protein K09791 K09791; uncharacterized protein
D PKF023_14770 hypothetical protein K09792 K09792; uncharacterized protein
D PKF023_12070 hypothetical protein K09794 K09794; uncharacterized protein
D PKF023_05870 hypothetical protein K09801 K09801; uncharacterized protein
D PKF023_07910 UPF0246 protein K09861 K09861; uncharacterized protein
D PKF023_08520 hypothetical protein K09919 K09919; uncharacterized protein
D PKF023_04080 hypothetical protein K09954 K09954; uncharacterized protein
D PKF023_15130 hypothetical protein K09966 K09966; uncharacterized protein
D PKF023_09390 hypothetical protein K09989 K09989; uncharacterized protein
D PKF023_06070 hypothetical protein K07220 K07220; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 24, 2024