+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Quercus suber (cork oak)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        112022802 DNA-directed RNA polymerase II subunit RPB1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        112005225 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        136061658 DNA-directed RNA polymerases II, IV and V subunit 3-like	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        112017983 DNA-directed RNA polymerases II, IV and V subunit 11	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
E        136063768 DNA-directed RNA polymerases II, IV and V subunit 11	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        112007314 DNA-directed RNA polymerase II subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        112033951 DNA-directed RNA polymerases IV and V subunit 4 isoform X1	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        112038797 DNA-directed RNA polymerases IV and V subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        112036272 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        112007307 DNA-directed RNA polymerases II, IV and V subunit 9A	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        111991753 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        111994726 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        111996790 LOW QUALITY PROTEIN: DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        111999619 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        112004341 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        112033914 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        112012711 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        112023590 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        111991900 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        112038271 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        112024906 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        112034004 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
E        112003836 DNA-directed RNA polymerase IV subunit 1 isoform X1	K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] 
E        111984290 DNA-directed RNA polymerase V subunit 1	K16251 NRPE1; DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] 
E        112011615 DNA-directed RNA polymerases IV and V subunit 2	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        111994499 DNA-directed RNA polymerase V subunit 7 isoform X1	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
E        112027486 DNA-directed RNA polymerase V subunit 7	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
C    Basal transcription factors
D      TFIIA
E        112036118 transcription initiation factor IIA large subunit	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        111988012 LOW QUALITY PROTEIN: transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        111994147 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        111995253 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        112003493 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        112028679 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
E        112032772 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        112038691 TATA-box-binding protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        112024705 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        111997891 transcription initiation factor TFIID subunit 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        112037104 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        112005972 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        111986793 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        112038058 transcription initiation factor TFIID subunit 6 isoform X2	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        111991074 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        111990297 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        112004961 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        111993865 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        112017936 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        112035750 transcription initiation factor TFIID subunit 10 isoform X1	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        112016467 transcription initiation factor TFIID subunit 11 isoform X1	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        111984543 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        112003600 transcription initiation factor TFIID subunit 12b	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        112032303 transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        112034962 transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        112024734 uncharacterized protein LOC112024734	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        112002083 transcription initiation factor IIE subunit beta	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
E        112030829 uncharacterized protein LOC112030829	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
E        136067807 uncharacterized protein LOC136067807	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        112007466 transcription initiation factor IIF subunit alpha isoform X1	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        111986132 transcription initiation factor IIF subunit beta isoform X1	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
E        111999440 uncharacterized protein LOC111999440	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        112012956 general transcription and DNA repair factor IIH subunit TFB1-1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        112021196 general transcription factor IIH subunit 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        112009567 general transcription and DNA repair factor IIH subunit TFB4-like isoform X1	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        136064047 general transcription and DNA repair factor IIH subunit TFB4 isoform X1	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        111989971 general transcription and DNA repair factor IIH subunit TFB2	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        111985419 general transcription and DNA repair factor IIH helicase subunit XPD	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        112038653 general transcription and DNA repair factor IIH subunit TFB5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        112024154 uncharacterized protein LOC112024154 isoform X1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        111995678 cyclin-H1-1	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        111984975 LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        112007485 mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        112019250 mediator of RNA polymerase II transcription subunit 17 isoform X1	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        112017188 mediator of RNA polymerase II transcription subunit 18	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        111985487 mediator of RNA polymerase II transcription subunit 20a isoform X1	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        112006492 mediator of RNA polymerase II transcription subunit 22b	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        112026461 mediator of RNA polymerase II transcription subunit 22b	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        112027006 mediator of RNA polymerase II transcription subunit 22b	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        136061089 mediator of RNA polymerase II transcription subunit 22a-like	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
D      Middle
E        111996974 mediator of RNA polymerase II transcription subunit 7a	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        111987297 mediator of RNA polymerase II transcription subunit 10b	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        112022149 mediator of RNA polymerase II transcription subunit 10b isoform X1	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        112036576 mediator of RNA polymerase II transcription subunit 10b-like	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        112024717 mediator of RNA polymerase II transcription subunit 21 isoform X1	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        112015871 mediator of RNA polymerase II transcription subunit 31	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        112037332 LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 14	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
D      CDK-module
E        112039139 cyclin-dependent kinase E-1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        111996126 cyclin-C1-2	K15161 CCNC; cyclin-C 
D      Other mediators
E        112023297 LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 23	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        112009765 LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 25-like	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        112019929 mediator of RNA polymerase II transcription subunit 25 isoform X1	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        112031464 mediator of RNA polymerase II transcription subunit 27	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
E        112035053 mediator of RNA polymerase II transcription subunit 32	K27471 MED32; mediator of RNA polymerase II transcription subunit 32 
E        111984117 mediator of RNA polymerase II transcription subunit 33A	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        112006269 LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 33A	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        112034532 mediator of RNA polymerase II transcription subunit 33B isoform X1	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        111998855 histone acetyltransferase GCN5	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        136062026 histone acetyltransferase GCN5-like	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        112035396 LOW QUALITY PROTEIN: uncharacterized protein LOC112035396	K08874 TRRAP; transformation/transcription domain-associated protein 
E        111985796 transcriptional adapter ADA2	K11314 TADA2A; transcriptional adapter 2-alpha 
E        111995576 transcriptional adapter ADA2-like	K11314 TADA2A; transcriptional adapter 2-alpha 
E        111995589 transcriptional adapter ADA2b	K11314 TADA2A; transcriptional adapter 2-alpha 
E        112024705 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        111997891 transcription initiation factor TFIID subunit 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        112037104 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        112005972 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        111986793 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        112038058 transcription initiation factor TFIID subunit 6 isoform X2	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        111991074 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        111993865 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        112017936 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        112035750 transcription initiation factor TFIID subunit 10 isoform X1	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        111984543 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        112003600 transcription initiation factor TFIID subunit 12b	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        112003549 SAGA-associated factor 11	K11363 ATXN7L; SAGA-associated factor 11 
E        112023971 SAGA-associated factor 29 homolog A isoform X1	K11364 SGF29; SAGA-associated factor 29 
E        112005195 transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        111998576 ubiquitin C-terminal hydrolase 22	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        112024360 ubiquitin C-terminal hydrolase 22	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        112012155 uncharacterized protein LOC112012155	K12830 SF3B3; splicing factor 3B subunit 3 
E        112035689 spliceosome-associated protein 130 A	K12830 SF3B3; splicing factor 3B subunit 3 
E        136065613 spliceosome-associated protein 130 A-like	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        112000054 ATP-dependent helicase BRM isoform X1	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        112020229 chromatin structure-remodeling complex protein BSH	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        112001740 SWI/SNF complex subunit SWI3A	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        112010646 LOW QUALITY PROTEIN: SWI/SNF complex subunit SWI3B	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        112033889 LOW QUALITY PROTEIN: SWI/SNF complex subunit SWI3C	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        112035049 SWI/SNF complex subunit SWI3D	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        112005143 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        111990738 actin-related protein 4 isoform X1	K11340 ACTL6A; actin-like protein 6A 
D      SWI/SNF complex
E        112020229 chromatin structure-remodeling complex protein BSH	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        112024860 RNA polymerase II transcriptional coactivator KELP	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        112029313 RNA polymerase II transcriptional coactivator KIWI	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        112005584 protein SHORT ROOT IN SALT MEDIUM 1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        111986968 transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        111986973 transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        111987269 transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        111987271 transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        111987277 transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        111987280 transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        111990187 transcription elongation factor TFIIS-like	K03145 TFIIS; transcription elongation factor S-II 
E        111990363 transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        112019925 transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        112025035 LOW QUALITY PROTEIN: transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        112035540 transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        111993376 transcription elongation factor SPT4 homolog 2	K15171 SUPT4H1; transcription elongation factor SPT4 
E        111989522 LOW QUALITY PROTEIN: putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        112027415 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        112031650 transcription elongation factor SPT6 homolog isoform X1	K11292 SUPT6H; transcription elongation factor SPT6 
E        112031657 transcription elongation factor SPT6 homolog	K11292 SUPT6H; transcription elongation factor SPT6 
E        136061704 transcription elongation factor SPT6 homolog	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        112016275 LOW QUALITY PROTEIN: polyadenylation and cleavage factor homolog 4	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        136061308 LOW QUALITY PROTEIN: polyadenylation and cleavage factor homolog 4-like	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        136061539 LOW QUALITY PROTEIN: polyadenylation and cleavage factor homolog 4-like	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        112026430 cleavage and polyadenylation specificity factor subunit 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        111997585 cleavage and polyadenylation specificity factor subunit 3-I	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        111997586 cleavage and polyadenylation specificity factor subunit 3-I-like isoform X1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        112001100 uncharacterized protein LOC112001100 isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        112035887 30-kDa cleavage and polyadenylation specificity factor 30	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        111984135 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        111993702 serine/threonine-protein phosphatase PP1 isoform X2	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        111995972 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase PP1 isozyme 4	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        112022537 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        112032731 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        136061184 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        111988265 uncharacterized protein LOC111988265	K06100 SYMPK; symplekin 
E        112019766 uncharacterized protein LOC112019766 isoform X1	K06100 SYMPK; symplekin 
E        136069829 LOW QUALITY PROTEIN: pre-tRNA-processing protein PTA1-like	K06100 SYMPK; symplekin 
E        112004303 uncharacterized protein LOC112004303	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        112003911 5'-3' exoribonuclease 3 isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        112022368 LOW QUALITY PROTEIN: NAD-capped RNA hydrolase DXO1	K14845 RAI1; RAT1-interacting protein 
E        112016051 uncharacterized protein LOC112016051	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        112023242 uncharacterized protein LOC112023242 isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        112023655 uncharacterized protein LOC112023655	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        111996678 peptidyl-prolyl cis-trans isomerase Pin1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        112033298 protein PAF1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        111987476 protein CDC73 homolog	K15175 CDC73; parafibromin 
E        111985493 protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        112039471 protein LEO1 homolog isoform X1	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        112035486 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
E        112037837 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
E        136061003 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
D      Super elongation complex (SEC)
E        111999778 LOW QUALITY PROTEIN: uncharacterized protein LOC111999778	K15186 EAF; ELL-associated factor 
E        136062400 uncharacterized protein LOC136062400	K15186 EAF; ELL-associated factor 
E        112001615 cyclin-T1-4 isoform X1	K15188 CCNT; cyclin T 
E        112011049 cyclin-T1-3	K15188 CCNT; cyclin T 
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
E        112001615 cyclin-T1-4 isoform X1	K15188 CCNT; cyclin T 
E        112011049 cyclin-T1-3	K15188 CCNT; cyclin T 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        111988806 probable RNA methyltransferase At5g51130 isoform X1	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        111984552 LOW QUALITY PROTEIN: la-related protein 6B	K15191 LARP7; La-related protein 7 
E        112009838 la-related protein 6A	K15191 LARP7; La-related protein 7 
E        112010546 la-related protein 6C	K15191 LARP7; La-related protein 7 
E        112001615 cyclin-T1-4 isoform X1	K15188 CCNT; cyclin T 
E        112011049 cyclin-T1-3	K15188 CCNT; cyclin T 
D      DBIRD complex
D      Others
E        111997825 TATA-binding protein-associated factor BTAF1 isoform X1	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        111997108 protein Dr1 homolog isoform X1	K21751 DR1; down-regulator of transcription 1 
E        111996429 uncharacterized protein LOC111996429	K21752 DRAP1; Dr1-associated corepressor 
E        112008249 uncharacterized protein LOC112008249	K21752 DRAP1; Dr1-associated corepressor 
E        112012975 LOW QUALITY PROTEIN: uncharacterized protein LOC112012975	K21752 DRAP1; Dr1-associated corepressor 
E        112032542 uncharacterized protein LOC112032542	K15193 SPTY2D1; protein SPT2 
E        112031715 RNA polymerase II C-terminal domain phosphatase-like 2	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        111988748 LOW QUALITY PROTEIN: RNA polymerase II C-terminal domain phosphatase-like 3	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        111991785 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        111991958 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        111991959 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        111991961 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        111991964 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        111991965 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        112001911 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        112001916 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        112014157 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        112014159 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        112026953 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        112031077 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        112038533 RNA polymerase II C-terminal domain phosphatase-like 4	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        136066284 RNA polymerase II C-terminal domain phosphatase-like 3	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        111991748 LOW QUALITY PROTEIN: uncharacterized protein LOC111991748	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        112011948 uncharacterized protein LOC112011948	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        112019776 uncharacterized protein LOC112019776	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        136066349 uncharacterized protein LOC136066349	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        112023932 protein IWS1 homolog 1	K17498 SPN1; transcription factor SPN1 
E        112000338 transcriptional elongation regulator MINIYO isoform X1	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        112003808 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        112005995 uncharacterized protein LOC112005995 isoform X1	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        111983141 GPN-loop GTPase QQT2 isoform X1	K24104 GPN; GPN-loop GTPase 
E        111993893 uncharacterized protein LOC111993893	K24104 GPN; GPN-loop GTPase 
E        112020580 GPN-loop GTPase QQT1	K24104 GPN; GPN-loop GTPase 
E        112030843 GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
E        112000438 RNA-directed DNA methylation 4 isoform X1	K28237 SLC7A6OS; RNA polymerase II nuclear localization protein 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        112028217 LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit 1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        112005992 DNA-directed RNA polymerase III subunit 2	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        111993856 uncharacterized protein LOC111993856 isoform X2	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        112012125 uncharacterized protein LOC112012125	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        111998987 uncharacterized protein LOC111998987 isoform X1	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        111985509 DNA-directed RNA polymerase III subunit rpc4 isoform X2	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        112032037 uncharacterized protein LOC112032037	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        112005111 uncharacterized protein LOC112005111	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        111983281 uncharacterized protein LOC111983281	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        112033976 LOW QUALITY PROTEIN: uncharacterized protein LOC112033976	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        112035551 LOW QUALITY PROTEIN: uncharacterized protein LOC112035551	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        136067934 uncharacterized protein LOC136067934	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        112021106 uncharacterized protein LOC112021106 isoform X1	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        111988963 uncharacterized protein LOC111988963 isoform X1	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        112012384 uncharacterized protein LOC112012384 isoform X1	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        111983255 uncharacterized protein LOC111983255	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        111991753 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        111994726 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        111996790 LOW QUALITY PROTEIN: DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        111999619 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        112004341 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        112033914 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        112012711 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        112023590 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        111991900 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        112038271 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        112024906 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        112034004 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        111998036 transcription factor IIIA isoform X3	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        112038691 TATA-box-binding protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        112006300 uncharacterized protein LOC112006300 isoform X1	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        112033327 LOW QUALITY PROTEIN: plant-specific TFIIB-related protein PTF2-like	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        112035990 plant-specific TFIIB-related protein PTF2	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        112040872 uncharacterized protein LOC112040872 isoform X1	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
D      TFIIIC
E        112003595 uncharacterized protein LOC112003595	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        112032069 uncharacterized protein LOC112032069 isoform X1	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        112017081 LOW QUALITY PROTEIN: uncharacterized protein LOC112017081	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        112027014 LOW QUALITY PROTEIN: uncharacterized protein LOC112027014	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        111984597 LOW QUALITY PROTEIN: uncharacterized protein LOC111984597	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        112010032 uncharacterized protein LOC112010032 isoform X1	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        111984597 LOW QUALITY PROTEIN: uncharacterized protein LOC111984597	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        112017081 LOW QUALITY PROTEIN: uncharacterized protein LOC112017081	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        112027014 LOW QUALITY PROTEIN: uncharacterized protein LOC112027014	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        112039048 uncharacterized protein LOC112039048	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        136065156 uncharacterized protein LOC136065156	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        112015638 snRNA-activating protein complex subunit isoform X1	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
D      Others
E        112022677 uncharacterized protein LOC112022677	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
E        136062911 uncharacterized protein LOC136062911	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        112015726 DNA-directed RNA polymerase I subunit 1	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        112008798 DNA-directed RNA polymerase I subunit 2	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        111993856 uncharacterized protein LOC111993856 isoform X2	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        112012125 uncharacterized protein LOC112012125	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        112003473 LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit rpa49	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
D      Pol I, II, III common subunits
E        111991753 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        111994726 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        111996790 LOW QUALITY PROTEIN: DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        111999619 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        112004341 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        112033914 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        112012711 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        112023590 DNA-directed RNA polymerases II, IV and V subunit 8B	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        111991900 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        112038271 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        112024906 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        112034004 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        112038691 TATA-box-binding protein 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
D      Transcription initiation factors
E        112001928 uncharacterized protein LOC112001928 isoform X1	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        112016262 upstream activation factor subunit spp27	K15223 UAF30; upstream activation factor subunit UAF30 
E        112033033 LOW QUALITY PROTEIN: uncharacterized protein LOC112033033	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        111993376 transcription elongation factor SPT4 homolog 2	K15171 SUPT4H1; transcription elongation factor SPT4 
E        111989522 LOW QUALITY PROTEIN: putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        112027415 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        111997226 ISWI chromatin-remodeling complex ATPase CHR11	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
E        111989490 RNA polymerase sigma factor sigA	K03086 rpoD; RNA polymerase primary sigma factor 
E        112003435 LOW QUALITY PROTEIN: RNA polymerase sigma factor sigC	K03093 sigI; RNA polymerase sigma-I factor 
E        112011848 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial	K03093 sigI; RNA polymerase sigma-I factor 
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        111994147 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        111995253 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        112003493 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        112028679 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
E        112032772 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        112024734 uncharacterized protein LOC112024734	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
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#Last updated: April 17, 2025