+F Repair protein KO
#
DNA Repair and Recombination Proteins - Quercus suber (cork oak)
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 111986514 DNA oxidative demethylase ALKBH2 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 111986527 DNA oxidative demethylase ALKBH2 isoform X1 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 112039464 DExH-box ATP-dependent RNA helicase DExH14 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 111999462 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 112020893 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 112038359 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 112021675 adenine DNA glycosylase isoform X2 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 111997372 uncharacterized protein LOC111997372 isoform X1 K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 112006948 uncharacterized protein LOC112006948 isoform X1 K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 136061091 N-glycosylase/DNA lyase OGG1-like K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 111996257 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 112020189 putative DNA glycosylase At3g47830 isoform X2 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
F 112011411 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 112015495 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F 112021016 LOW QUALITY PROTEIN: uncharacterized protein LOC112021016 K03504 POLD3; DNA polymerase delta subunit 3
F 111988029 uncharacterized protein LOC111988029 K03505 POLD4; DNA polymerase delta subunit 4
F 111997209 uncharacterized protein LOC111997209 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 111996722 DNA polymerase epsilon catalytic subunit A K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 112038614 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 112027084 DNA polymerase II subunit B4 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 112003142 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 112012131 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 111997677 flap endonuclease 1 isoform X1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 111994202 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 112013250 DNA-repair protein XRCC1 isoform X1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 112031670 tyrosyl-DNA phosphodiesterase 1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 112040136 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 111990336 DNA polymerase lambda isoform X2 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 111987540 poly [ADP-ribose] polymerase 1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 111993037 poly [ADP-ribose] polymerase 2 K28005 PARP2; poly [ADP-ribose] polymerase 2 [EC:2.4.2.30]
E 111992772 LOW QUALITY PROTEIN: protein ADP-ribosyltransferase PARP3 K10798 PARP3_4; protein mono-ADP-ribosyltransferase 3/4 [EC:2.4.2.-]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 112027591 DNA repair protein RAD4 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 111983334 ubiquitin receptor RAD23b K10839 RAD23; UV excision repair protein RAD23
F 112025848 ubiquitin receptor RAD23c K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 111993014 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 112001674 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111993789 cullin-4 K10609 CUL4; cullin 4
F 112007104 DNA damage-binding protein 1a isoform X2 K10610 DDB1; DNA damage-binding protein 1
F 112006141 protein DAMAGED DNA-BINDING 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 112039828 uncharacterized protein LOC112039828 K15082 RAD7; DNA repair protein RAD7
F 112039680 DNA repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 112022802 DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 112005225 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 136061658 DNA-directed RNA polymerases II, IV and V subunit 3-like K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 112007314 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 112033951 DNA-directed RNA polymerases IV and V subunit 4 isoform X1 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 112038797 DNA-directed RNA polymerases IV and V subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 111991753 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111994726 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111996790 LOW QUALITY PROTEIN: DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111999619 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 112004341 DNA-directed RNA polymerases II, IV and V subunit 6A K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 112033914 DNA-directed RNA polymerases II, IV and V subunit 6A K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 112036272 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 112012711 DNA-directed RNA polymerases II, IV and V subunit 8B K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 112023590 DNA-directed RNA polymerases II, IV and V subunit 8B K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 112007307 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 112024906 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 112034004 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 112017983 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 136063768 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 111991900 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
F 112038271 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 111993014 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 112001674 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111993789 cullin-4 K10609 CUL4; cullin 4
F 112007104 DNA damage-binding protein 1a isoform X2 K10610 DDB1; DNA damage-binding protein 1
E Other TCR factor
F 112019278 protein CHROMATIN REMODELING 8 isoform X1 K10841 ERCC6; DNA excision repair protein ERCC-6
F 112029275 LOW QUALITY PROTEIN: UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 112030658 UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 112020125 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 111985419 general transcription and DNA repair factor IIH helicase subunit XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 112012956 general transcription and DNA repair factor IIH subunit TFB1-1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 112021196 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 112009567 general transcription and DNA repair factor IIH subunit TFB4-like isoform X1 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 136064047 general transcription and DNA repair factor IIH subunit TFB4 isoform X1 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 111989971 general transcription and DNA repair factor IIH subunit TFB2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 112038653 general transcription and DNA repair factor IIH subunit TFB5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 111995678 cyclin-H1-1 K06634 CCNH; cyclin H
E 112024154 uncharacterized protein LOC112024154 isoform X1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 112017680 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 112020147 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 112023528 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 112017407 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 112025316 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 112010841 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 112025387 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 136061087 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D Other NER factors
E 112010386 DNA excision repair protein ERCC-1 isoform X1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 112028632 DNA excision repair protein ERCC-1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 112037443 DNA repair endonuclease UVH1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 111986873 DNA repair protein UVH3 isoform X1 K10846 ERCC5; DNA excision repair protein ERCC-5
E 111994202 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 112033301 MMS19 nucleotide excision repair protein homolog isoform X1 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 112027465 protein CIA1 K24730 CIAO1; cytosolic iron-sulfur protein assembly protein CIAO1
E 112030953 protein CIA1 K24730 CIAO1; cytosolic iron-sulfur protein assembly protein CIAO1
E 111998786 protein AE7-like 1 K26403 CIAO2; cytosolic iron-sulfur assembly component 2
E 112037491 protein AE7 K26403 CIAO2; cytosolic iron-sulfur assembly component 2
E 111996866 cullin-3A isoform X1 K03869 CUL3; cullin 3
E 111996885 cullin-3A K03869 CUL3; cullin 3
E 111998727 cullin-3A K03869 CUL3; cullin 3
E 112022555 uncharacterized protein LOC112022555 K03872 ELOC; elongin-C
E 111998273 polyubiquitin isoform X1 K03873 ELOB; elongin-B
E 136061363 uncharacterized protein LOC136061363 K03873 ELOB; elongin-B
E 136061674 uncharacterized protein LOC136061674 K03873 ELOB; elongin-B
E 111986493 uncharacterized protein LOC111986493 K15077 ELA1; elongin-A
E 112001565 uncharacterized protein LOC112001565 K15077 ELA1; elongin-A
E 112030927 uncharacterized protein LOC112030927 K15077 ELA1; elongin-A
E 112033390 uncharacterized protein LOC112033390 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 112024698 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E 112006841 LOW QUALITY PROTEIN: DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
E 112030170 DNA mismatch repair protein MSH7 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 111996357 DNA mismatch repair protein PMS1 K10858 PMS2; DNA mismatch repair protein PMS2
E 112005523 DNA mismatch repair protein MLH3 isoform X4 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 112011411 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 112015495 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E 112021016 LOW QUALITY PROTEIN: uncharacterized protein LOC112021016 K03504 POLD3; DNA polymerase delta subunit 3
E 111988029 uncharacterized protein LOC111988029 K03505 POLD4; DNA polymerase delta subunit 4
E 111997209 uncharacterized protein LOC111997209 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 112017680 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 112020147 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 112023528 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 112017407 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 112025316 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 112010841 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 112025387 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 136061087 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 112040745 replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E 136068238 replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E 111999495 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 112038286 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 112035701 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 112040579 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 112003142 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 112012131 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 112037099 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 111994202 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 111998901 LOW QUALITY PROTEIN: uncharacterized protein LOC111998901 K24755 WDR76; WD repeat-containing protein 76
E 112040113 uncharacterized protein LOC112040113 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 111984229 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 112012926 nibrin homolog K10867 NBN; nibrin
D BRCA1-core complex
E 112007387 LOW QUALITY PROTEIN: BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 112041012 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 111986988 uncharacterized protein LOC111986988 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 136065930 uncharacterized protein LOC136065930 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 111983228 uncharacterized protein LOC111983228 K12173 BRE; BRCA1-A complex subunit BRE
E 111983935 uncharacterized protein LOC111983935 isoform X1 K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 112023586 uncharacterized protein LOC112023586 isoform X2 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 111999234 uncharacterized protein LOC111999234 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 112006859 uncharacterized protein LOC112006859 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 111984229 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 112012926 nibrin homolog K10867 NBN; nibrin
D BRCA complex
E 112019939 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 112019939 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 112016681 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 111994448 LOW QUALITY PROTEIN: DNA repair protein RAD51 homolog 4 K10871 RAD51L3; RAD51-like protein 3
E 112020890 DNA repair protein XRCC2 homolog K10879 XRCC2; DNA-repair protein XRCC2
E 136067092 DNA repair protein XRCC2 homolog K10879 XRCC2; DNA-repair protein XRCC2
E 112025339 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 112016351 DNA repair RAD52-like protein 1, mitochondrial K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 136066648 DNA repair RAD52-like protein 1, mitochondrial K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 111985641 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 111986518 SNF2 domain-containing protein CLASSY 3 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 112002935 LOW QUALITY PROTEIN: SNF2 domain-containing protein CLASSY 4 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 112011739 SNF2 domain-containing protein CLASSY 4 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 112024447 protein CHROMATIN REMODELING 25 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 112032205 LOW QUALITY PROTEIN: protein CHROMATIN REMODELING 35 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 112032208 protein CHROMATIN REMODELING 35 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 112032212 protein CHROMATIN REMODELING 35 isoform X1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 112003918 ATP-dependent DNA helicase Q-like 1 isoform X1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 112015664 ATP-dependent DNA helicase Q-like 2 isoform X1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 112030700 LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q-like SIM K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 112008948 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 112014047 LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q-like 5 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 112008948 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 112029290 LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 112035825 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 112001742 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 111988639 uncharacterized protein LOC111988639 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 112017680 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 112020147 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 112023528 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 112017407 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 112025316 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 112010841 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 112025387 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 136061087 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 112029885 serine/threonine-protein phosphatase PP-X isozyme 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 112032220 uncharacterized protein LOC112032220 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 112039234 uncharacterized protein LOC112039234 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 112007285 uncharacterized protein LOC112007285 isoform X2 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 111995072 LOW QUALITY PROTEIN: uncharacterized protein LOC111995072 K19022 AP5B1; AP-5 complex subunit beta-1
E 112017631 AP-5 complex subunit mu K19023 AP5M1; AP-5 complex subunit mu-1
E 111989413 uncharacterized protein LOC111989413 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 111993835 structural maintenance of chromosomes protein 5 isoform X1 K22803 SMC5; structural maintenance of chromosomes protein 5
E 112019806 structural maintenance of chromosomes protein 6B K22804 SMC6; structural maintenance of chromosomes protein 6
E 111984627 uncharacterized protein LOC111984627 isoform X2 K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 112024545 E3 SUMO-protein ligase MMS21 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 112015280 non-structural maintenance of chromosomes element 4 homolog A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 112015287 non-structural maintenance of chromosomes element 4 homolog A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 112025617 non-structural maintenance of chromosomes element 4 homolog A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 112030433 crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 112029370 protein DSS1 HOMOLOG ON CHROMOSOME V K10881 SHFM1; 26 proteasome complex subunit DSS1
E 111989662 uncharacterized protein LOC111989662 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 111998992 single-strand DNA endonuclease 1 isoform X1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 112025349 LOW QUALITY PROTEIN: flap endonuclease GEN-like 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 111985067 uncharacterized protein LOC111985067 K19026 SPG11; spatacsin
E 111998469 uncharacterized protein LOC111998469 isoform X1 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 112022504 LOW QUALITY PROTEIN: protein MRG1 K11339 MORF4L1; mortality factor 4-like protein 1
E 112030052 protein MRG1 isoform X3 K11339 MORF4L1; mortality factor 4-like protein 1
E 112015603 uncharacterized protein LOC112015603 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 112022589 uncharacterized protein LOC112022589 isoform X1 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 112005212 ATPase family AAA domain-containing protein FIGL1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 112000994 uncharacterized protein LOC112000994 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 112009413 uncharacterized protein LOC112009413 isoform X1 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 136065044 uncharacterized protein LOC136065044 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 111992823 uncharacterized protein LOC111992823 K27803 HROB; homologous recombination OB-fold protein
E 111999752 probable DNA helicase MCM8 isoform X1 K10737 MCM8; DNA helicase MCM8 [EC:5.6.2.4]
E 111995066 uncharacterized protein LOC111995066 K15047 HNRNPUL1; heterogeneous nuclear ribonucleoprotein U-like protein 1
E 136068561 uncharacterized protein LOC136068561 K28623 MRNIP; MRN complex-interacting protein
E 112027609 3'-5' exonuclease isoform X1 K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 111986206 uncharacterized protein LOC111986206 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 112001858 LOW QUALITY PROTEIN: DNA-dependent metalloprotease WSS1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 136061610 DNA-dependent metalloprotease WSS1-like K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 112016313 single-stranded DNA-binding protein WHY2, mitochondrial K26561 WHY2; single-stranded DNA-binding protein WHY2
E 136066325 single-stranded DNA-binding protein WHY2, mitochondrial-like K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 111994183 ATP-dependent DNA helicase 2 subunit KU70 isoform X1 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 112027820 ATP-dependent DNA helicase 2 subunit KU80 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 111984229 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
D DNA Ligase 4 complex
E 112026514 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 112033145 DNA repair protein XRCC4 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 111990336 DNA polymerase lambda isoform X2 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 112040136 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 112030748 uncharacterized protein LOC112030748 isoform X1 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 112031046 uncharacterized protein LOC112031046 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 136071028 uncharacterized protein LOC136071028 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 112034621 LOW QUALITY PROTEIN: structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
C FA (Fanconi anemia) pathway
D FA core complex
E 112016108 uncharacterized protein LOC112016108 isoform X1 K10606 FANCL; E3 ubiquitin-protein ligase FANCL [EC:2.3.2.27]
E 112031974 DEAD-box ATP-dependent RNA helicase FANCM K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 112000075 protein MHF1 homolog isoform X2 K11511 APITD1; centromere protein S
E 112013878 protein MHF2 homolog isoform X2 K15360 STRA13; centromere protein X
E 112013930 uncharacterized protein LOC112013930 isoform X1 K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
D Bloom's syndrome complex (BTR)
E 112008948 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 112029290 LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 112035825 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 112001742 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 111988639 uncharacterized protein LOC111988639 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
E 111989263 uncharacterized protein LOC111989263 isoform X1 K10891 FANCD2; fanconi anemia group D2 protein
E 136066375 uncharacterized protein LOC136066375 K10895 FANCI; fanconi anemia group I protein
D Downstream FA components
E 112023586 uncharacterized protein LOC112023586 isoform X2 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 112036552 fanconi-associated nuclease 1 homolog isoform X1 K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 112019939 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 112016681 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 111995092 uncharacterized protein LOC111995092 isoform X1 K11137 TELO2; telomere length regulation protein
E 111990950 uncharacterized protein LOC111990950 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 136067181 phytochrome-associated serine/threonine-protein phosphatase-like K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 111995110 uncharacterized protein LOC111995110 isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 112031119 LOW QUALITY PROTEIN: uncharacterized protein LOC112031119 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 112033196 uncharacterized protein LOC112033196 K23314 WRAP53; telomerase Cajal body protein 1
E 111991485 uncharacterized protein LOC111991485 K24752 WDR70; WD repeat-containing protein 70
E 111998901 LOW QUALITY PROTEIN: uncharacterized protein LOC111998901 K24755 WDR76; WD repeat-containing protein 76
E 112040113 uncharacterized protein LOC112040113 K24755 WDR76; WD repeat-containing protein 76
E 112003380 uncharacterized protein LOC112003380 isoform X1 K28434 HMCES; abasic site processing protein HMCES
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 111999160 DNA polymerase eta isoform X1 K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 112001332 uncharacterized protein LOC112001332 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 136061876 DNA polymerase kappa isoform X1 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 112031133 DNA repair protein REV1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 111995684 LOW QUALITY PROTEIN: DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
D 136061388 DNA polymerase zeta catalytic subunit-like K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 111987594 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 112009857 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 111985216 DNA repair protein RAD5A K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 111993891 DNA repair protein RAD5B K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 111986495 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 111984616 ubiquitin-conjugating enzyme E2 variant 1B K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 111998689 ubiquitin-conjugating enzyme E2 variant 1D K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 112001949 ubiquitin-conjugating enzyme E2 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 112037141 ubiquitin-conjugating enzyme E2 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 112003142 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D 112012131 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 112018302 uncharacterized protein LOC112018302 K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 111991950 uncharacterized protein LOC111991950 K10903 HUS1; HUS1 checkpoint protein
D 112034435 uncharacterized protein LOC112034435 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 112038761 cell cycle checkpoint protein RAD17 K06662 HRAD17; cell cycle checkpoint protein
D 111999495 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 112038286 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 112035701 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 112040579 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 112034435 uncharacterized protein LOC112034435 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 112015400 uncharacterized protein LOC112015400 isoform X1 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 111997109 LOW QUALITY PROTEIN: uncharacterized protein LOC111997109 K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 111995092 uncharacterized protein LOC111995092 isoform X1 K11137 TELO2; telomere length regulation protein
D 112034689 uncharacterized protein LOC112034689 isoform X1 K20403 TTI1; TELO2-interacting protein 1
D 112011754 uncharacterized protein At2g39910 isoform X1 K23115 TTI2; TELO2-interacting protein 2
D 112025563 uncharacterized protein At2g39910 isoform X1 K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 111988929 LOW QUALITY PROTEIN: ubiquitin-like domain-containing protein CIP73 K23390 BAG6; large proline-rich protein BAG6
D 112041119 LOW QUALITY PROTEIN: protein GET4 K23387 GET4; golgi to ER traffic protein 4
C SOSS complex
D 136061008 LOW QUALITY PROTEIN: uncharacterized protein LOC136061008 K13140 INTS3; integrator complex subunit 3 (SOSS complex subunit A)
D 136066386 uncharacterized protein LOC136066386 K13140 INTS3; integrator complex subunit 3 (SOSS complex subunit A)
D 112034252 uncharacterized protein LOC112034252 K28889 NABP; SOSS complex subunit B
D 136065196 uncharacterized protein LOC136065196 K28889 NABP; SOSS complex subunit B
C Other check point factors
D 112000780 serine/threonine-protein kinase ATR isoform X1 K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 112019333 serine/threonine-protein kinase ATM K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 111987349 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 111998586 14-3-3-like protein G-BOX factor 14 kappa isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 111999641 14-3-3-like protein GF14 iota K06630 YWHAE; 14-3-3 protein epsilon
D 112005245 LOW QUALITY PROTEIN: 14-3-3 protein 10 K06630 YWHAE; 14-3-3 protein epsilon
D 112026333 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 112027295 14-3-3-like protein A isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 112033888 14-3-3 protein 7 K06630 YWHAE; 14-3-3 protein epsilon
D 112036003 14-3-3 protein 9-like K06630 YWHAE; 14-3-3 protein epsilon
D 112036004 14-3-3-like protein C K06630 YWHAE; 14-3-3 protein epsilon
D 112037131 14-3-3-like protein D K06630 YWHAE; 14-3-3 protein epsilon
D 136064277 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 112004785 wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 112012733 uncharacterized protein LOC112012733 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 111988205 serine/threonine-protein kinase Nek2 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 112008286 serine/threonine-protein kinase Nek6 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 112027233 serine/threonine-protein kinase Nek2 isoform X2 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 112029840 serine/threonine-protein kinase Nek5 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111991103 uncharacterized protein LOC111991103 K22422 DONSON; protein downstream neighbor of Son
D 111994600 LOW QUALITY PROTEIN: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 111994601 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 112001366 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 112007742 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 136061983 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 136063902 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 111989350 uncharacterized protein LOC111989350 K25059 SDE2; replication stress response regulator SDE2
D 112022609 LOW QUALITY PROTEIN: protein DECREASED SIZE EXCLUSION LIMIT 1-like K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 112014134 helicase and polymerase-containing protein TEBICHI isoform X1 K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 112023502 uncharacterized protein LOC112023502 K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 111994508 uncharacterized protein LOC111994508 isoform X1 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
D 111999941 LOW QUALITY PROTEIN: uncharacterized protein LOC111999941 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 111984578 DNA cross-link repair protein SNM1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 111996378 LOW QUALITY PROTEIN: uncharacterized protein LOC111996378 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 112009036 uncharacterized protein LOC112009036 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 112015747 LOW QUALITY PROTEIN: uncharacterized protein LOC112015747 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 112027414 DNA cross-link repair protein SNM1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 112002680 uncharacterized protein LOC112002680 K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 112032967 uncharacterized protein LOC112032967 K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 112038971 exonuclease V, chloroplastic K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 112038980 exonuclease V, chloroplastic isoform X1 K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 111998460 uncharacterized protein LOC111998460 K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 112022480 uncharacterized protein LOC112022480 isoform X1 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D 111992530 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 112023689 endonuclease 1 isoform X1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 112023690 endonuclease 4 isoform X1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 136066077 endonuclease 1-like K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 112035020 switch 2 isoform X1 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 112012915 pre-mRNA-processing factor 19 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 111985670 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 112030776 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 112013191 LOW QUALITY PROTEIN: protein pleiotropic regulatory locus 1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 112040653 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 112003502 LOW QUALITY PROTEIN: deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 112027508 ribonucleoside-diphosphate reductase large subunit isoform X2 K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 136066507 ribonucleoside-diphosphate reductase large subunit isoform X1 K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 112005137 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 112006271 ribonucleoside-diphosphate reductase small chain A isoform X1 K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 111999462 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 112020893 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 111996222 DNA-3-methyladenine glycosylase 1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 111999576 uncharacterized protein LOC111999576 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 136070282 uncharacterized protein LOC136070282 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 112038359 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 112021675 adenine DNA glycosylase isoform X2 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 111996832 uncharacterized protein LOC111996832 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 112013834 uncharacterized protein LOC112013834 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 112021238 uncharacterized protein LOC112021238 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 112024251 uncharacterized protein LOC112024251 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111986419 formamidopyrimidine-DNA glycosylase isoform X1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 111996257 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 112020189 putative DNA glycosylase At3g47830 isoform X2 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 111992152 DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 136069452 DNA polymerase I B, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 136069452 DNA polymerase I B, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 111989695 uncharacterized protein LOC111989695 isoform X1 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 111991818 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
E 111996966 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
E 136068404 single-stranded DNA-binding protein, mitochondrial-like K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 112025962 LOW QUALITY PROTEIN: DNA repair protein recA homolog 3, mitochondrial K03553 recA; recombination protein RecA
E 112027455 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 112025962 LOW QUALITY PROTEIN: DNA repair protein recA homolog 3, mitochondrial K03553 recA; recombination protein RecA
E 112027455 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
E 112023714 uncharacterized protein LOC112023714 K04485 radA; DNA repair protein RadA/Sms
E 112022273 ATP-dependent DNA helicase homolog RECG, chloroplastic-like isoform X1 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E 112038484 ATP-dependent DNA helicase homolog RECG, chloroplastic K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 112026485 DNA gyrase subunit B, chloroplastic/mitochondrial K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 112007262 LOW QUALITY PROTEIN: uncharacterized protein LOC112007262 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 112025962 LOW QUALITY PROTEIN: DNA repair protein recA homolog 3, mitochondrial K03553 recA; recombination protein RecA
D 112027455 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D 111991818 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
D 111996966 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
D 136068404 single-stranded DNA-binding protein, mitochondrial-like K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 112040653 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 112003502 LOW QUALITY PROTEIN: deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 23, 2026