+D GENES KO
#
KEGG Orthology (KO) - Rhodococcus antarcticus
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:rant00010]
D RHODO2019_10005 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RHODO2019_17360 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RHODO2019_17515 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RHODO2019_01055 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RHODO2019_04140 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RHODO2019_12725 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D RHODO2019_05995 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RHODO2019_18470 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RHODO2019_00505 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RHODO2019_07070 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RHODO2019_07060 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RHODO2019_07065 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RHODO2019_01625 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RHODO2019_12935 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RHODO2019_09500 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RHODO2019_07515 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D RHODO2019_10645 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RHODO2019_11710 pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RHODO2019_10200 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RHODO2019_10195 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RHODO2019_02040 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D RHODO2019_02035 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D RHODO2019_15865 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RHODO2019_13605 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D RHODO2019_02855 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RHODO2019_11400 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_13070 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_15220 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_06140 aldose 1-epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D RHODO2019_13920 aldose 1-epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D RHODO2019_11865 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RHODO2019_05545 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D RHODO2019_08470 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D RHODO2019_17335 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
C 00020 Citrate cycle (TCA cycle) [PATH:rant00020]
D RHODO2019_13910 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RHODO2019_13945 citrate synthase 2 K01647 CS; citrate synthase [EC:2.3.3.1]
D RHODO2019_05895 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RHODO2019_07245 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RHODO2019_02750 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RHODO2019_03735 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D RHODO2019_10195 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RHODO2019_02040 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D RHODO2019_02035 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D RHODO2019_02660 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RHODO2019_02655 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RHODO2019_02785 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RHODO2019_05905 fumarate reductase/succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RHODO2019_02780 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RHODO2019_05910 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RHODO2019_02795 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RHODO2019_05900 succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RHODO2019_02790 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RHODO2019_12740 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RHODO2019_02745 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RHODO2019_16550 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D RHODO2019_08470 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D RHODO2019_17335 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D RHODO2019_10645 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RHODO2019_11710 pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RHODO2019_10200 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:rant00030]
D RHODO2019_01055 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RHODO2019_07095 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RHODO2019_16295 glucose-6-phosphate dehydrogenase (NADP(+)) K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RHODO2019_07085 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D RHODO2019_08285 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D RHODO2019_16435 gnd; decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D RHODO2019_07005 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RHODO2019_07105 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RHODO2019_07100 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D RHODO2019_11505 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RHODO2019_05990 phosphoketolase family protein K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D RHODO2019_00290 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D RHODO2019_13645 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D RHODO2019_11865 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RHODO2019_12995 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RHODO2019_09140 glucose 1-dehydrogenase K00034 gdh; glucose 1-dehydrogenase [EC:1.1.1.47]
D RHODO2019_09385 gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D RHODO2019_05995 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RHODO2019_18470 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RHODO2019_00505 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RHODO2019_12725 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D RHODO2019_04140 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:rant00040]
D RHODO2019_00005 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RHODO2019_13145 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RHODO2019_18875 class II aldolase/adducin family protein K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D RHODO2019_07005 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RHODO2019_02945 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D RHODO2019_02940 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D RHODO2019_17710 FAD-binding protein K00594 xyoA; alditol oxidase [EC:1.1.3.41]
C 00051 Fructose and mannose metabolism [PATH:rant00051]
D RHODO2019_13915 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RHODO2019_03545 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D RHODO2019_02895 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RHODO2019_03530 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RHODO2019_03480 NDP-sugar synthase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D RHODO2019_04140 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RHODO2019_12725 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D RHODO2019_17710 FAD-binding protein K00594 xyoA; alditol oxidase [EC:1.1.3.41]
D RHODO2019_02940 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D RHODO2019_05995 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RHODO2019_18470 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RHODO2019_00505 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RHODO2019_07070 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RHODO2019_11505 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RHODO2019_16065 HAD-IA family hydrolase K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
C 00052 Galactose metabolism [PATH:rant00052]
D RHODO2019_06140 aldose 1-epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D RHODO2019_13920 aldose 1-epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D RHODO2019_14795 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D RHODO2019_14790 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D RHODO2019_09315 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RHODO2019_15145 NAD(P)-dependent oxidoreductase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RHODO2019_15680 NAD(P)-dependent oxidoreductase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RHODO2019_18445 NAD(P)-dependent oxidoreductase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RHODO2019_01685 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RHODO2019_13145 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RHODO2019_11865 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RHODO2019_10005 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RHODO2019_17360 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RHODO2019_17515 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RHODO2019_14800 DUF4981 domain-containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D RHODO2019_14780 beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D RHODO2019_15720 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D RHODO2019_14760 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D RHODO2019_04140 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RHODO2019_11560 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D RHODO2019_12765 alpha-glucosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
C 00053 Ascorbate and aldarate metabolism [PATH:rant00053]
D RHODO2019_00005 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RHODO2019_18875 class II aldolase/adducin family protein K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D RHODO2019_02855 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:rant00500]
D RHODO2019_11560 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D RHODO2019_13145 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RHODO2019_09330 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RHODO2019_15095 glycoside hydrolase family 6 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D RHODO2019_12305 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D RHODO2019_04055 glycosyltransferase family 4 protein K16150 K16150; glycogen synthase [EC:2.4.1.11]
D RHODO2019_04000 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D RHODO2019_04060 glycoside hydrolase family 57 protein K16149 K16149; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D RHODO2019_04020 glgP; alpha-glucan family phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D RHODO2019_04010 treS; maltose alpha-D-glucosyltransferase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1]
D RHODO2019_12765 alpha-glucosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D RHODO2019_17650 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D RHODO2019_04005 phosphotransferase K16146 pep2; maltokinase [EC:2.7.1.175]
D RHODO2019_04015 DUF3416 domain-containing protein K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16]
D RHODO2019_12310 glgA; glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D RHODO2019_04025 glgX; glycogen debranching protein GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D RHODO2019_04825 glgX; glycogen debranching protein GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D RHODO2019_09685 glgX; glycogen debranching protein GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D RHODO2019_09690 treY; malto-oligosyltrehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15]
D RHODO2019_09695 treZ; malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141]
D RHODO2019_14750 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D RHODO2019_08260 otsB; trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D RHODO2019_11245 glycoside hydrolase family 15 protein K22934 E3.2.1.28; alpha,alpha-trehalase [EC:3.2.1.28]
D RHODO2019_06040 family 65 glycosyl hydrolase K05342 treP; alpha,alpha-trehalose phosphorylase [EC:2.4.1.64]
D RHODO2019_11865 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RHODO2019_10005 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RHODO2019_17360 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RHODO2019_17515 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RHODO2019_01055 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RHODO2019_13915 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rant00520]
D RHODO2019_16200 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RHODO2019_13915 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RHODO2019_02505 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RHODO2019_02480 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D RHODO2019_12990 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D RHODO2019_03885 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RHODO2019_01585 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RHODO2019_00210 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D RHODO2019_00070 SDR family oxidoreductase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D RHODO2019_10005 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RHODO2019_17360 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RHODO2019_17515 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RHODO2019_05545 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D RHODO2019_11865 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RHODO2019_13145 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RHODO2019_00005 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RHODO2019_14795 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D RHODO2019_14790 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D RHODO2019_09315 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RHODO2019_15145 NAD(P)-dependent oxidoreductase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RHODO2019_15680 NAD(P)-dependent oxidoreductase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RHODO2019_18445 NAD(P)-dependent oxidoreductase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RHODO2019_01685 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RHODO2019_15720 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D RHODO2019_01055 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RHODO2019_03545 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D RHODO2019_02895 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RHODO2019_03530 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RHODO2019_03480 NDP-sugar synthase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D RHODO2019_12305 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:rant00620]
D RHODO2019_11400 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_13070 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_15220 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_02040 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D RHODO2019_02035 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D RHODO2019_10645 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RHODO2019_11710 pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RHODO2019_10200 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RHODO2019_10195 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RHODO2019_15865 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RHODO2019_13605 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D RHODO2019_08640 acetate/propionate family kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RHODO2019_09500 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RHODO2019_03660 biotin/lipoyl-binding carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RHODO2019_03250 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D RHODO2019_10685 acyl-CoA carboxylase subunit beta K18472 accD6; acetyl-CoA/propionyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.2 6.4.1.3 2.1.3.15]
D RHODO2019_04460 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D RHODO2019_02855 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RHODO2019_06425 alpha-hydroxy-acid oxidizing protein K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D RHODO2019_06445 pyruvate dehydrogenase K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D RHODO2019_15605 alpha-hydroxy-acid oxidizing protein K00467 E1.13.12.4; lactate 2-monooxygenase [EC:1.13.12.4]
D RHODO2019_06700 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D RHODO2019_03705 NADP-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D RHODO2019_14230 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D RHODO2019_02745 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RHODO2019_16550 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D RHODO2019_12740 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RHODO2019_17420 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RHODO2019_08470 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D RHODO2019_17335 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D RHODO2019_07515 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D RHODO2019_08750 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D RHODO2019_03970 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_05765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_11600 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_12890 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_17765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_15375 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rant00630]
D RHODO2019_11400 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_13070 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_15220 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_08750 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D RHODO2019_02745 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RHODO2019_13910 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RHODO2019_13945 citrate synthase 2 K01647 CS; citrate synthase [EC:2.3.3.1]
D RHODO2019_05895 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RHODO2019_07245 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RHODO2019_03970 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_05765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_11600 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_12890 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_17765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_03965 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D RHODO2019_03895 protein meaA K14447 ecm; ethylmalonyl-CoA mutase [EC:5.4.99.63]
D RHODO2019_08890 CoA ester lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25]
D RHODO2019_03250 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D RHODO2019_03280 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D RHODO2019_03275 acyl-CoA carboxylase subunit epsilon K27095 accE5; acyl-CoA carboxylase epsilon subunit
D RHODO2019_10685 acyl-CoA carboxylase subunit beta K18472 accD6; acetyl-CoA/propionyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.2 6.4.1.3 2.1.3.15]
D RHODO2019_02905 methylmalonyl-CoA mutase subunit beta K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D RHODO2019_02910 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D RHODO2019_05325 FAD-binding protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D RHODO2019_13585 FAD-binding protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D RHODO2019_05320 FAD-binding oxidoreductase K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14]
D RHODO2019_05315 glcF; glycolate oxidase subunit GlcF K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D RHODO2019_10490 HAD hydrolase-like protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D RHODO2019_10245 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RHODO2019_10275 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RHODO2019_03820 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RHODO2019_08365 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RHODO2019_10180 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RHODO2019_10195 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RHODO2019_08390 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D RHODO2019_13780 gcl; glyoxylate carboligase K01608 gcl; tartronate-semialdehyde synthase [EC:4.1.1.47]
D RHODO2019_13770 TIM barrel protein K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22]
D RHODO2019_13775 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
D RHODO2019_13785 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RHODO2019_03735 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D RHODO2019_04775 molybdopterin-dependent oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D RHODO2019_04780 4Fe-4S dicluster domain-containing protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D RHODO2019_01565 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D RHODO2019_18370 acetamidase/formamidase family protein K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
D RHODO2019_18390 acetamidase/formamidase family protein K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
C 00640 Propanoate metabolism [PATH:rant00640]
D RHODO2019_11400 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_13070 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_15220 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_08640 acetate/propionate family kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RHODO2019_17720 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RHODO2019_17725 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RHODO2019_17730 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RHODO2019_10195 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RHODO2019_02045 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RHODO2019_05760 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RHODO2019_03660 biotin/lipoyl-binding carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RHODO2019_03250 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D RHODO2019_10685 acyl-CoA carboxylase subunit beta K18472 accD6; acetyl-CoA/propionyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.2 6.4.1.3 2.1.3.15]
D RHODO2019_03280 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D RHODO2019_03275 acyl-CoA carboxylase subunit epsilon K27095 accE5; acyl-CoA carboxylase epsilon subunit
D RHODO2019_03965 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D RHODO2019_02905 methylmalonyl-CoA mutase subunit beta K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D RHODO2019_02910 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D RHODO2019_02655 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RHODO2019_02660 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RHODO2019_16630 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00650 Butanoate metabolism [PATH:rant00650]
D RHODO2019_03970 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_05765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_11600 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_12890 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_17765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_03940 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D RHODO2019_17315 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D RHODO2019_05760 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RHODO2019_02045 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RHODO2019_03955 ccrA; crotonyl-CoA carboxylase/reductase K17829 ccrA; crotonyl-CoA reductase [EC:1.3.1.86]
D RHODO2019_06240 alpha/beta fold hydrolase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D RHODO2019_14560 alpha/beta fold hydrolase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D RHODO2019_02785 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RHODO2019_05905 fumarate reductase/succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RHODO2019_02780 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RHODO2019_05910 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RHODO2019_02795 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RHODO2019_05900 succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RHODO2019_02790 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RHODO2019_16565 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D RHODO2019_12515 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RHODO2019_13205 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RHODO2019_02040 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D RHODO2019_02035 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D RHODO2019_14460 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D RHODO2019_00275 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RHODO2019_00280 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D RHODO2019_05390 acetoacetate--CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D RHODO2019_07480 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D RHODO2019_06270 acetoacetate decarboxylase K01574 adc; acetoacetate decarboxylase [EC:4.1.1.4]
D RHODO2019_12575 beta-lactamase family protein K18372 acmB; methyl acetate hydrolase [EC:3.1.1.114]
D RHODO2019_04190 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RHODO2019_04195 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RHODO2019_06320 2,3-butanediol dehydrogenase K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303]
C 00660 C5-Branched dibasic acid metabolism [PATH:rant00660]
D RHODO2019_04190 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RHODO2019_04195 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RHODO2019_02655 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RHODO2019_02660 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RHODO2019_08890 CoA ester lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25]
D RHODO2019_04245 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D RHODO2019_04250 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D RHODO2019_04210 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:rant00562]
D RHODO2019_05550 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RHODO2019_09570 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RHODO2019_16635 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D RHODO2019_16630 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D RHODO2019_07070 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:rant00190]
D RHODO2019_07575 NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D RHODO2019_01925 NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D RHODO2019_01930 NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D RHODO2019_02060 nuoB; NADH-quinone oxidoreductase subunit NuoB K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D RHODO2019_01935 NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D RHODO2019_02065 NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D RHODO2019_14930 hypothetical protein K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D RHODO2019_01940 NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D RHODO2019_01945 nuoE; NADH-quinone oxidoreductase subunit NuoE K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D RHODO2019_01955 NADH-quinone oxidoreductase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D RHODO2019_07585 NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D RHODO2019_01960 nuoH; NADH-quinone oxidoreductase subunit NuoH K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D RHODO2019_01965 nuoI; NADH-quinone oxidoreductase subunit NuoI K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D RHODO2019_02070 4Fe-4S binding protein K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D RHODO2019_07590 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D RHODO2019_01970 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D RHODO2019_01975 nuoK; NADH-quinone oxidoreductase subunit NuoK K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D RHODO2019_07600 proton-conducting transporter membrane subunit K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D RHODO2019_01980 nuoL; NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D RHODO2019_07605 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D RHODO2019_01985 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D RHODO2019_07610 NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D RHODO2019_01990 nuoN; NADH-quinone oxidoreductase subunit NuoN K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D RHODO2019_07595 nuoK; NADH-quinone oxidoreductase subunit NuoK K05576 ndhE; NAD(P)H-quinone oxidoreductase subunit 4L [EC:7.1.1.2]
D RHODO2019_07490 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D RHODO2019_12905 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D RHODO2019_02785 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RHODO2019_05905 fumarate reductase/succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RHODO2019_02780 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RHODO2019_05910 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RHODO2019_02795 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RHODO2019_05900 succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RHODO2019_02790 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RHODO2019_06060 cytochrome b N-terminal domain-containing protein K03887 qcrB; quinol---cytochrome c reductase cytochrome b subunit, bacillus type [EC:7.1.1.8]
D RHODO2019_01245 cytochrome b N-terminal domain-containing protein K03887 qcrB; quinol---cytochrome c reductase cytochrome b subunit, bacillus type [EC:7.1.1.8]
D RHODO2019_10110 ubiquinol-cytochrome c reductase iron-sulfur subunit K03890 qcrA; quinol---cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D RHODO2019_10115 cytochrome bc complex cytochrome b subunit K03891 qcrB; quinol---cytochrome-c reductase cytochrome b subunit [EC:7.1.1.8]
D RHODO2019_10105 cytochrome c K03889 qcrC; quinol---cytochrome-c reductase cytochrome c subunit [EC:7.1.1.8]
D RHODO2019_07110 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RHODO2019_10120 cytochrome c oxidase subunit 4 K27109 ctaF; cytochrome c oxidase subunit IV [EC:7.1.1.9]
D RHODO2019_10100 heme-copper oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D RHODO2019_05890 ctaD; cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D RHODO2019_11830 ctaD; cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D RHODO2019_10125 cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D RHODO2019_07130 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RHODO2019_08235 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RHODO2019_08230 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RHODO2019_03855 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RHODO2019_03865 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RHODO2019_03860 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RHODO2019_03850 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RHODO2019_03870 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RHODO2019_03835 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RHODO2019_03845 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RHODO2019_03840 ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RHODO2019_06000 plasma-membrane proton-efflux P-type ATPase K01535 PMA1; H+-transporting ATPase [EC:7.1.2.1]
D RHODO2019_14990 inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D RHODO2019_04265 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:rant00710]
D RHODO2019_07065 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RHODO2019_07060 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RHODO2019_05995 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RHODO2019_18470 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RHODO2019_00505 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RHODO2019_12725 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D RHODO2019_07105 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RHODO2019_11505 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RHODO2019_07070 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RHODO2019_07005 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RHODO2019_07100 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D RHODO2019_17420 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RHODO2019_02745 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:rant00720]
D RHODO2019_07515 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D RHODO2019_17420 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RHODO2019_02745 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RHODO2019_12740 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RHODO2019_02785 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RHODO2019_05905 fumarate reductase/succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RHODO2019_02780 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RHODO2019_05910 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RHODO2019_02795 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RHODO2019_05900 succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RHODO2019_02790 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RHODO2019_02660 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RHODO2019_02655 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RHODO2019_03970 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_05765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_11600 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_12890 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_17765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_02040 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D RHODO2019_02035 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D RHODO2019_02750 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RHODO2019_05895 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RHODO2019_07245 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RHODO2019_03660 biotin/lipoyl-binding carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RHODO2019_08890 CoA ester lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25]
D RHODO2019_03965 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D RHODO2019_02905 methylmalonyl-CoA mutase subunit beta K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D RHODO2019_02910 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D RHODO2019_02725 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RHODO2019_09925 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D RHODO2019_08640 acetate/propionate family kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RHODO2019_11400 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_13070 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_15220 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:rant00680]
D RHODO2019_13735 fdhA; formaldehyde dehydrogenase, glutathione-independent K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46]
D RHODO2019_14350 mdo; NDMA-dependent methanol dehydrogenase K17067 mdo; formaldehyde dismutase / methanol dehydrogenase [EC:1.2.98.1 1.1.99.37]
D RHODO2019_15865 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RHODO2019_04775 molybdopterin-dependent oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D RHODO2019_04780 4Fe-4S dicluster domain-containing protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D RHODO2019_03820 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RHODO2019_12935 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RHODO2019_17420 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D RHODO2019_02745 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RHODO2019_08890 CoA ester lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25]
D RHODO2019_05995 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RHODO2019_18470 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RHODO2019_00505 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RHODO2019_12725 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D RHODO2019_04140 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RHODO2019_08640 acetate/propionate family kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RHODO2019_11400 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_13070 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_15220 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_07515 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D RHODO2019_01625 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RHODO2019_04205 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RHODO2019_13950 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RHODO2019_11825 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D RHODO2019_10515 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71]
D RHODO2019_12410 bifunctional FO biosynthesis protein CofGH K11779 fbiC; FO synthase [EC:2.5.1.147 4.3.1.32]
D RHODO2019_03500 cofD; 2-phospho-L-lactate transferase K11212 cofD; LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28]
D RHODO2019_03495 coenzyme F420-0:L-glutamate ligase K24998 fbiB; dehydro coenzyme F420 reductase / coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:1.3.8.17 6.3.2.31 6.3.2.34]
C 00910 Nitrogen metabolism [PATH:rant00910]
D RHODO2019_18370 acetamidase/formamidase family protein K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
D RHODO2019_18390 acetamidase/formamidase family protein K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
D RHODO2019_08515 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D RHODO2019_08510 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D RHODO2019_08505 narH; nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D RHODO2019_08495 narI; respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D RHODO2019_11575 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RHODO2019_02885 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D RHODO2019_10245 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RHODO2019_10275 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RHODO2019_09510 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RHODO2019_13865 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RHODO2019_09505 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D RHODO2019_13870 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D RHODO2019_17385 cynS; cyanase K01725 cynS; cyanate lyase [EC:4.2.1.104]
D RHODO2019_08645 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D RHODO2019_14850 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:rant00920]
D RHODO2019_10545 aliphatic sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RHODO2019_10540 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D RHODO2019_10550 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RHODO2019_05025 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D RHODO2019_18840 NAD(P)/FAD-dependent oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D RHODO2019_13460 DoxX family membrane protein K16937 doxD; thiosulfate dehydrogenase (quinone) large subunit [EC:1.8.5.2]
D RHODO2019_03265 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RHODO2019_13345 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RHODO2019_15045 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RHODO2019_15040 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RHODO2019_01820 PLP-dependent cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RHODO2019_02735 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RHODO2019_14660 alpha/beta fold hydrolase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RHODO2019_18365 alpha/beta fold hydrolase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RHODO2019_12870 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D RHODO2019_09225 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D RHODO2019_02670 sfnG; dimethyl sulfone monooxygenase SfnG K17228 sfnG; dimethylsulfone monooxygenase [EC:1.14.14.35]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:rant00061]
D RHODO2019_03660 biotin/lipoyl-binding carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RHODO2019_03250 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D RHODO2019_10685 acyl-CoA carboxylase subunit beta K18472 accD6; acetyl-CoA/propionyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.2 6.4.1.3 2.1.3.15]
D RHODO2019_10675 acyl carrier protein K02078 acpP; acyl carrier protein
D RHODO2019_10665 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RHODO2019_10670 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RHODO2019_10680 beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RHODO2019_05225 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RHODO2019_17760 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RHODO2019_00880 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26]
D RHODO2019_06225 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_10035 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_11885 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_14590 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_15825 acyl--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_16840 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:rant00071]
D RHODO2019_03970 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_05765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_11600 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_12890 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_17765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_05760 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RHODO2019_02045 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RHODO2019_06740 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D RHODO2019_13350 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D RHODO2019_14195 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D RHODO2019_00355 acyl-CoA dehydrogenase family protein K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8]
D RHODO2019_06250 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RHODO2019_06255 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RHODO2019_00435 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RHODO2019_06225 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_10035 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_11885 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_14590 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_15825 acyl--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_16840 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_13285 NAD(P)/FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D RHODO2019_15865 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RHODO2019_02855 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:rant00561]
D RHODO2019_13785 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RHODO2019_02855 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RHODO2019_13605 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D RHODO2019_03220 dhaK; dihydroxyacetone kinase subunit DhaK K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D RHODO2019_03215 dhaL; dihydroxyacetone kinase subunit DhaL K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D RHODO2019_03225 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RHODO2019_08855 HAD-IIA family hydrolase K06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21]
D RHODO2019_12835 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RHODO2019_03600 wax ester/triacylglycerol synthase family O-acyltransferase K00635 tgs; diacylglycerol O-acyltransferase / wax synthase [EC:2.3.1.20 2.3.1.75]
D RHODO2019_04685 wax ester/triacylglycerol synthase family O-acyltransferase K00635 tgs; diacylglycerol O-acyltransferase / wax synthase [EC:2.3.1.20 2.3.1.75]
D RHODO2019_11645 alpha/beta fold hydrolase K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
D RHODO2019_14760 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:rant00564]
D RHODO2019_04275 NAD(P)-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D RHODO2019_03240 glycerol-3-phosphate dehydrogenase/oxidase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D RHODO2019_12835 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RHODO2019_07455 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D RHODO2019_08030 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D RHODO2019_15900 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D RHODO2019_13725 ethanolamine ammonia-lyase subunit EutB K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7]
D RHODO2019_13730 eutC; ethanolamine ammonia-lyase subunit EutC K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7]
D RHODO2019_04600 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D RHODO2019_14520 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D RHODO2019_03015 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D RHODO2019_14515 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D RHODO2019_05180 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D RHODO2019_09920 CDP-alcohol phosphatidyltransferase family protein K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D RHODO2019_08410 CDP-alcohol phosphatidyltransferase family protein K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:rant00600]
D RHODO2019_14800 DUF4981 domain-containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D RHODO2019_14760 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids [PATH:rant01040]
D RHODO2019_00880 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26]
D RHODO2019_10300 fatty acid desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-]
D RHODO2019_10295 ferredoxin reductase K22770 K22770; stearoyl-CoA 9-desaturase NADPH oxidoreductase
D RHODO2019_07415 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D RHODO2019_09495 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:rant00230]
D RHODO2019_11865 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RHODO2019_12995 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RHODO2019_00715 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RHODO2019_00560 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D RHODO2019_02680 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D RHODO2019_13095 purT; formate-dependent phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D RHODO2019_00685 purL; phosphoribosylformylglycinamidine synthase subunit PurL K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D RHODO2019_00650 purS; phosphoribosylformylglycinamidine synthase subunit PurS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D RHODO2019_00655 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RHODO2019_00730 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D RHODO2019_03335 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D RHODO2019_03340 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D RHODO2019_00615 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D RHODO2019_00600 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RHODO2019_02685 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RHODO2019_06685 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RHODO2019_14160 HAD-IIA family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D RHODO2019_02900 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RHODO2019_09790 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RHODO2019_14970 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D RHODO2019_02595 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RHODO2019_02600 GuaB3 family IMP dehydrogenase-related protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RHODO2019_11415 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RHODO2019_11760 rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D RHODO2019_11770 FAD binding domain-containing protein K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]
D RHODO2019_02610 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RHODO2019_08330 GuaB1 family IMP dehydrogenase-related protein K26110 guaB1; GMP reductase [EC:1.7.1.7]
D RHODO2019_06950 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D RHODO2019_05360 vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RHODO2019_11090 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D RHODO2019_06690 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RHODO2019_12920 Ppx/GppA family phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D RHODO2019_01650 Ppx/GppA family phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D RHODO2019_09390 adenylate/guanylate cyclase domain-containing protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D RHODO2019_17225 adenylate/guanylate cyclase domain-containing protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D RHODO2019_00535 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RHODO2019_10135 carbohydrate kinase family protein K00856 ADK; adenosine kinase [EC:2.7.1.20]
D RHODO2019_02830 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D RHODO2019_02360 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RHODO2019_06600 HIT domain-containing protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D RHODO2019_13760 pucL; urate oxidase K00365 uaZ; urate oxidase [EC:1.7.3.3]
D RHODO2019_13755 uraH; hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D RHODO2019_13750 uraD; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase K16840 hpxQ; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97]
D RHODO2019_09100 dihydroorotase family protein K01466 allB; allantoinase [EC:3.5.2.5]
D RHODO2019_13790 allB; allantoinase AllB K01466 allB; allantoinase [EC:3.5.2.5]
D RHODO2019_13800 alc; allantoicase K01477 alc; allantoicase [EC:3.5.3.4]
D RHODO2019_04900 Zn-dependent hydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D RHODO2019_08645 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:rant00240]
D RHODO2019_06935 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RHODO2019_06930 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RHODO2019_06915 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RHODO2019_06920 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D RHODO2019_07705 quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D RHODO2019_00460 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D RHODO2019_06940 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D RHODO2019_04590 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D RHODO2019_11415 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RHODO2019_03270 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D RHODO2019_08820 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D RHODO2019_08785 cmk; (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D RHODO2019_14160 HAD-IIA family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D RHODO2019_02860 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D RHODO2019_06910 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D RHODO2019_05510 pseudouridine-5'-phosphate glycosidase K16329 psuG; pseudouridylate synthase [EC:4.2.1.70]
D RHODO2019_02820 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D RHODO2019_17900 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D RHODO2019_05360 vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RHODO2019_03560 dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D RHODO2019_05575 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RHODO2019_02825 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D RHODO2019_08025 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D RHODO2019_05145 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D RHODO2019_05140 thyX; FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D RHODO2019_18175 cysteine hydrolase K09020 rutB; ureidoacrylate peracid hydrolase [EC:3.5.1.110]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:rant00250]
D RHODO2019_09630 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D RHODO2019_13240 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D RHODO2019_10130 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RHODO2019_00360 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RHODO2019_08295 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D RHODO2019_08920 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RHODO2019_08915 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RHODO2019_00535 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RHODO2019_00600 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RHODO2019_06915 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RHODO2019_16565 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D RHODO2019_12515 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RHODO2019_13205 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RHODO2019_09510 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RHODO2019_13865 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RHODO2019_09505 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D RHODO2019_13870 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D RHODO2019_11575 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RHODO2019_02885 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D RHODO2019_03625 pruA; L-glutamate gamma-semialdehyde dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]
D RHODO2019_10245 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RHODO2019_10275 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RHODO2019_06935 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RHODO2019_06930 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RHODO2019_00655 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RHODO2019_02505 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RHODO2019_00715 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:rant00260]
D RHODO2019_15355 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RHODO2019_15350 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RHODO2019_03780 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RHODO2019_03790 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D RHODO2019_03785 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D RHODO2019_16580 beta-eliminating lyase-related protein K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D RHODO2019_03820 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RHODO2019_13785 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RHODO2019_01625 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RHODO2019_04205 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RHODO2019_13950 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RHODO2019_11825 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D RHODO2019_19000 primary-amine oxidase K00276 AOC3; primary-amine oxidase [EC:1.4.3.21]
D RHODO2019_08365 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RHODO2019_10180 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RHODO2019_10195 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RHODO2019_08390 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D RHODO2019_14520 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D RHODO2019_08290 aminobutyraldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D RHODO2019_12880 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D RHODO2019_04280 cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D RHODO2019_05775 ilvA; threonine ammonia-lyase IlvA K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RHODO2019_12860 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RHODO2019_09520 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RHODO2019_09525 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D RHODO2019_00555 ectoine synthase K06720 ectC; L-ectoine synthase [EC:4.2.1.108]
C 00270 Cysteine and methionine metabolism [PATH:rant00270]
D RHODO2019_15045 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RHODO2019_15040 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RHODO2019_01820 PLP-dependent cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RHODO2019_04280 cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D RHODO2019_13110 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RHODO2019_12880 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D RHODO2019_12625 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RHODO2019_06965 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RHODO2019_16865 S-methyl-5'-thioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
D RHODO2019_09790 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RHODO2019_18575 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RHODO2019_03555 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RHODO2019_15355 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RHODO2019_15350 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RHODO2019_03780 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RHODO2019_02735 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RHODO2019_14660 alpha/beta fold hydrolase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RHODO2019_18365 alpha/beta fold hydrolase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RHODO2019_12870 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D RHODO2019_02740 bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D RHODO2019_08255 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D RHODO2019_09225 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D RHODO2019_10175 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RHODO2019_07225 egtA; ergothioneine biosynthesis glutamate--cysteine ligase EgtA K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D RHODO2019_03265 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RHODO2019_13345 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RHODO2019_02745 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RHODO2019_04205 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RHODO2019_13950 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:rant00280]
D RHODO2019_10175 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RHODO2019_17720 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RHODO2019_17725 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RHODO2019_17730 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RHODO2019_10195 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RHODO2019_06740 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D RHODO2019_13350 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D RHODO2019_14195 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D RHODO2019_14455 acyl-CoA dehydrogenase family protein K11410 acdH; short-chain 2-methylacyl-CoA dehydrogenase [EC:1.3.8.5]
D RHODO2019_02045 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RHODO2019_05760 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RHODO2019_03250 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D RHODO2019_03280 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D RHODO2019_03275 acyl-CoA carboxylase subunit epsilon K27095 accE5; acyl-CoA carboxylase epsilon subunit
D RHODO2019_10685 acyl-CoA carboxylase subunit beta K18472 accD6; acetyl-CoA/propionyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.2 6.4.1.3 2.1.3.15]
D RHODO2019_03965 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D RHODO2019_02905 methylmalonyl-CoA mutase subunit beta K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D RHODO2019_02910 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D RHODO2019_08320 NAD(P)-binding domain-containing protein K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D RHODO2019_16630 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D RHODO2019_02855 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RHODO2019_14465 ATP-grasp domain-containing protein K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
D RHODO2019_14470 methylcrotonoyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D RHODO2019_11230 enoyl-CoA hydratase-related protein K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D RHODO2019_14460 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D RHODO2019_00275 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RHODO2019_00280 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D RHODO2019_05390 acetoacetate--CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D RHODO2019_03970 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_05765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_11600 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_12890 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_17765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rant00290]
D RHODO2019_05775 ilvA; threonine ammonia-lyase IlvA K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RHODO2019_12860 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RHODO2019_04245 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D RHODO2019_04250 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D RHODO2019_04210 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D RHODO2019_04190 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RHODO2019_04195 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RHODO2019_04200 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D RHODO2019_04540 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RHODO2019_10175 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RHODO2019_00360 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RHODO2019_15375 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:rant00300]
D RHODO2019_03780 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RHODO2019_15355 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RHODO2019_15350 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RHODO2019_05155 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RHODO2019_05095 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D RHODO2019_12370 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D RHODO2019_08935 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RHODO2019_01510 pyridoxal phosphate-dependent aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D RHODO2019_12365 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RHODO2019_05330 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RHODO2019_03775 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D RHODO2019_09835 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RHODO2019_09830 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:rant00310]
D RHODO2019_10195 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RHODO2019_06250 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RHODO2019_06255 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RHODO2019_00435 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RHODO2019_02045 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RHODO2019_05760 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RHODO2019_03970 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_05765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_11600 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_12890 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_17765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_12515 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RHODO2019_13205 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RHODO2019_13245 lhgO; L-2-hydroxyglutarate oxidase K15736 lhgO; (S)-2-hydroxyglutarate dehydrogenase [EC:1.1.5.13]
D RHODO2019_02855 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:rant00220]
D RHODO2019_08650 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D RHODO2019_08930 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D RHODO2019_08920 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RHODO2019_08915 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RHODO2019_02055 N-dimethylarginine dimethylaminohydrolase K27545 argZ; arginine dihydrolase [EC:3.5.3.27]
D RHODO2019_08655 arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D RHODO2019_15880 arcA; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D RHODO2019_00655 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RHODO2019_10245 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RHODO2019_10275 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RHODO2019_06935 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RHODO2019_06930 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RHODO2019_08645 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D RHODO2019_11575 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RHODO2019_02885 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D RHODO2019_00360 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RHODO2019_05170 amino-acid N-acetyltransferase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1]
D RHODO2019_08945 argJ; bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D RHODO2019_14610 GNAT family N-acetyltransferase K22476 K22476; N-acetylglutamate synthase [EC:2.3.1.1]
D RHODO2019_08940 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D RHODO2019_08950 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D RHODO2019_08935 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:rant00330]
D RHODO2019_14080 hydantoinase/oxoprolinase family protein K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]
D RHODO2019_14075 hydantoinase B/oxoprolinase family protein K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14]
D RHODO2019_02855 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RHODO2019_05815 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_05820 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_07785 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_13235 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_02055 N-dimethylarginine dimethylaminohydrolase K27545 argZ; arginine dihydrolase [EC:3.5.3.27]
D RHODO2019_05735 rocD; ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D RHODO2019_01670 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D RHODO2019_17830 proline dehydrogenase family protein K00318 PRODH; proline dehydrogenase [EC:1.5.5.2]
D RHODO2019_03625 pruA; L-glutamate gamma-semialdehyde dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]
D RHODO2019_11370 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D RHODO2019_11345 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D RHODO2019_07975 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
C 00340 Histidine metabolism [PATH:rant00340]
D RHODO2019_07850 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D RHODO2019_07845 phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D RHODO2019_09560 hisI; phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D RHODO2019_09575 priA; bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D RHODO2019_09585 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D RHODO2019_09565 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D RHODO2019_09610 hisB; imidazoleglycerol-phosphate dehydratase HisB K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D RHODO2019_09615 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RHODO2019_10385 cobC; Rv2231c family pyridoxal phosphate-dependent protein CobC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RHODO2019_15590 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RHODO2019_11960 hisN; histidinol-phosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15]
D RHODO2019_17610 PHP domain-containing protein K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D RHODO2019_09620 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D RHODO2019_02855 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RHODO2019_07240 egtD; L-histidine N(alpha)-methyltransferase K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44]
D RHODO2019_07230 egtB; ergothioneine biosynthesis protein EgtB K18912 egtB; gamma-glutamyl hercynylcysteine S-oxide synthase [EC:1.14.99.50]
D RHODO2019_07235 egtC; ergothioneine biosynthesis protein EgtC K07008 egtC; gamma-glutamyl hercynylcysteine S-oxide hydrolase [EC:3.5.1.118]
D RHODO2019_04145 aminotransferase class V-fold PLP-dependent enzyme K18913 egtE; hercynylcysteine S-oxide lyase [EC:4.4.1.36]
C 00350 Tyrosine metabolism [PATH:rant00350]
D RHODO2019_09615 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RHODO2019_10385 cobC; Rv2231c family pyridoxal phosphate-dependent protein CobC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RHODO2019_15590 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RHODO2019_19000 primary-amine oxidase K00276 AOC3; primary-amine oxidase [EC:1.4.3.21]
D RHODO2019_15865 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RHODO2019_12515 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RHODO2019_13205 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RHODO2019_18220 cupin domain-containing protein K00450 E1.13.11.4; gentisate 1,2-dioxygenase [EC:1.13.11.4]
D RHODO2019_18230 maleylpyruvate isomerase family mycothiol-dependent enzyme K16163 K16163; maleylpyruvate isomerase [EC:5.2.1.4]
D RHODO2019_18225 fumarylacetoacetate hydrolase family protein K16164 K16164; acylpyruvate hydrolase [EC:3.7.1.5]
C 00360 Phenylalanine metabolism [PATH:rant00360]
D RHODO2019_19000 primary-amine oxidase K00276 AOC3; primary-amine oxidase [EC:1.4.3.21]
D RHODO2019_05450 paaF; phenylacetate--CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D RHODO2019_16285 paaI; hydroxyphenylacetyl-CoA thioesterase PaaI K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-]
D RHODO2019_07615 paaA; 1,2-phenylacetyl-CoA epoxidase subunit A K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149]
D RHODO2019_07620 paaB; 1,2-phenylacetyl-CoA epoxidase subunit B K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB
D RHODO2019_07625 paaC; phenylacetate-CoA oxygenase subunit PaaC K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]
D RHODO2019_07630 paaJ; phenylacetate-CoA oxygenase subunit PaaJ K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD
D RHODO2019_07635 paaK; phenylacetate-CoA oxygenase/reductase subunit PaaK K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
D RHODO2019_11615 enoyl-CoA hydratase-related protein K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D RHODO2019_13490 enoyl-CoA hydratase-related protein K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D RHODO2019_02045 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RHODO2019_03940 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D RHODO2019_17315 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D RHODO2019_09615 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RHODO2019_10385 cobC; Rv2231c family pyridoxal phosphate-dependent protein CobC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RHODO2019_15590 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RHODO2019_08705 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D RHODO2019_15055 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D RHODO2019_05815 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_05820 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_07785 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_13235 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_13285 NAD(P)/FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
C 00380 Tryptophan metabolism [PATH:rant00380]
D RHODO2019_15365 kynU; kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3]
D RHODO2019_10195 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RHODO2019_06250 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RHODO2019_06255 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RHODO2019_00435 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RHODO2019_02045 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RHODO2019_05760 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RHODO2019_03970 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_05765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_11600 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_12890 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_17765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_02855 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RHODO2019_03045 nitrile hydratase subunit alpha K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84]
D RHODO2019_05815 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_05820 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_07785 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_13235 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_08705 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D RHODO2019_15055 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rant00400]
D RHODO2019_09985 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RHODO2019_06880 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D RHODO2019_06885 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D RHODO2019_06875 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D RHODO2019_03635 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D RHODO2019_06870 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D RHODO2019_09540 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RHODO2019_10085 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D RHODO2019_09575 priA; bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D RHODO2019_09530 trpC; indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D RHODO2019_09520 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RHODO2019_09525 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D RHODO2019_02630 chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D RHODO2019_15555 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D RHODO2019_15855 pheA; prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D RHODO2019_09615 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RHODO2019_10385 cobC; Rv2231c family pyridoxal phosphate-dependent protein CobC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RHODO2019_15590 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:rant00410]
D RHODO2019_14910 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D RHODO2019_16565 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D RHODO2019_19000 primary-amine oxidase K00276 AOC3; primary-amine oxidase [EC:1.4.3.21]
D RHODO2019_02855 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RHODO2019_14915 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RHODO2019_02045 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RHODO2019_05760 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RHODO2019_16630 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:rant00430]
D RHODO2019_16565 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D RHODO2019_05870 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RHODO2019_16050 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RHODO2019_08295 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D RHODO2019_11575 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RHODO2019_08640 acetate/propionate family kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:rant00450]
D RHODO2019_12870 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D RHODO2019_13110 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RHODO2019_12625 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RHODO2019_04280 cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D RHODO2019_07170 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D RHODO2019_16505 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RHODO2019_04805 selD; selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D RHODO2019_04795 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D RHODO2019_13045 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:rant00460]
D RHODO2019_09330 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RHODO2019_05870 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RHODO2019_16050 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RHODO2019_13240 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D RHODO2019_03820 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RHODO2019_18370 acetamidase/formamidase family protein K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
D RHODO2019_18390 acetamidase/formamidase family protein K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
C 00470 D-Amino acid metabolism [PATH:rant00470]
D RHODO2019_02520 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RHODO2019_04285 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RHODO2019_15755 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RHODO2019_00655 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RHODO2019_11780 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D RHODO2019_09820 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RHODO2019_05330 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RHODO2019_03775 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:rant00480]
D RHODO2019_05870 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RHODO2019_16050 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RHODO2019_17805 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D RHODO2019_07225 egtA; ergothioneine biosynthesis glutamate--cysteine ligase EgtA K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D RHODO2019_10185 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RHODO2019_11520 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RHODO2019_03155 NAD(P)/FAD-dependent oxidoreductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D RHODO2019_02750 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RHODO2019_08285 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D RHODO2019_16435 gnd; decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D RHODO2019_07095 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RHODO2019_16295 glucose-6-phosphate dehydrogenase (NADP(+)) K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RHODO2019_08085 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis [PATH:rant00515]
D RHODO2019_13065 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00514 Other types of O-glycan biosynthesis [PATH:rant00514]
D RHODO2019_13065 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:rant00511]
D RHODO2019_14800 DUF4981 domain-containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis [PATH:rant00542]
D RHODO2019_03825 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rant00541]
D RHODO2019_13145 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RHODO2019_09315 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RHODO2019_15145 NAD(P)-dependent oxidoreductase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RHODO2019_15680 NAD(P)-dependent oxidoreductase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RHODO2019_18445 NAD(P)-dependent oxidoreductase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RHODO2019_01685 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RHODO2019_15720 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D RHODO2019_00005 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RHODO2019_15645 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RHODO2019_03460 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RHODO2019_12065 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RHODO2019_03465 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D RHODO2019_03545 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D RHODO2019_02895 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RHODO2019_03530 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RHODO2019_12990 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D RHODO2019_00210 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
C 00550 Peptidoglycan biosynthesis [PATH:rant00550]
D RHODO2019_03885 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RHODO2019_01585 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RHODO2019_09805 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RHODO2019_09820 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RHODO2019_09835 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RHODO2019_04285 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RHODO2019_15755 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RHODO2019_09830 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RHODO2019_11155 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RHODO2019_02995 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RHODO2019_07735 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RHODO2019_09825 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RHODO2019_09810 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RHODO2019_09840 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RHODO2019_16330 penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A
D RHODO2019_02775 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RHODO2019_14985 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RHODO2019_12800 MurT ligase domain-containing protein K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D RHODO2019_12795 glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
C 00552 Teichoic acid biosynthesis [PATH:rant00552]
D RHODO2019_02995 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RHODO2019_07735 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RHODO2019_03825 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:rant00543]
D RHODO2019_03825 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D RHODO2019_15045 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:rant00730]
D RHODO2019_14630 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D RHODO2019_14680 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D RHODO2019_04085 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RHODO2019_14695 thiO; glycine oxidase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19]
D RHODO2019_05630 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RHODO2019_14685 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D RHODO2019_14700 thiE; thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D RHODO2019_04300 thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D RHODO2019_03630 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RHODO2019_02360 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RHODO2019_14670 transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RHODO2019_14665 hypothetical protein K20896 TENA_E; formylaminopyrimidine deformylase / aminopyrimidine aminohydrolase [EC:3.5.1.- 3.5.99.-]
C 00740 Riboflavin metabolism [PATH:rant00740]
D RHODO2019_07020 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D RHODO2019_07010 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RHODO2019_07025 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D RHODO2019_07015 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D RHODO2019_05040 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D RHODO2019_10650 bluB; 5,6-dimethylbenzimidazole synthase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79]
C 00750 Vitamin B6 metabolism [PATH:rant00750]
D RHODO2019_13940 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D RHODO2019_11880 aldo/keto reductase K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65]
D RHODO2019_12500 oxidoreductase K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65]
D RHODO2019_13950 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RHODO2019_03785 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D RHODO2019_06630 pdxS; pyridoxal 5'-phosphate synthase lyase subunit PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D RHODO2019_06640 pdxT; pyridoxal 5'-phosphate synthase glutaminase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:rant00760]
D RHODO2019_09630 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D RHODO2019_09635 nadA; quinolinate synthase NadA K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D RHODO2019_09625 nadC; carboxylating nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D RHODO2019_11805 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D RHODO2019_02900 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RHODO2019_14160 HAD-IIA family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D RHODO2019_11330 nadD; nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D RHODO2019_12075 nudC; NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D RHODO2019_17255 nadE; ammonia-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D RHODO2019_11810 isochorismatase family protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D RHODO2019_13600 NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D RHODO2019_08840 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D RHODO2019_05805 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D RHODO2019_05810 pntB; Re/Si-specific NAD(P)(+) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D RHODO2019_14065 isocitrate lyase/PEP mutase family protein K20454 dml; 2,3-dimethylmalate lyase [EC:4.1.3.32]
D RHODO2019_12515 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RHODO2019_13205 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:rant00770]
D RHODO2019_04190 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RHODO2019_04195 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RHODO2019_04200 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D RHODO2019_04540 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RHODO2019_10290 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D RHODO2019_17400 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D RHODO2019_14915 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RHODO2019_14905 type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D RHODO2019_06960 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D RHODO2019_04375 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D RHODO2019_18795 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D RHODO2019_09425 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D RHODO2019_02510 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D RHODO2019_10175 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RHODO2019_14910 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D RHODO2019_02855 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:rant00780]
D RHODO2019_10680 beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RHODO2019_05225 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RHODO2019_17760 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RHODO2019_09670 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D RHODO2019_09675 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D RHODO2019_09665 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D RHODO2019_09660 bioB; biotin synthase BioB K01012 bioB; biotin synthase [EC:2.8.1.6]
D RHODO2019_03290 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:rant00785]
D RHODO2019_10215 lipB; lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D RHODO2019_10225 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D RHODO2019_10195 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RHODO2019_10645 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RHODO2019_11710 pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RHODO2019_10200 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RHODO2019_03735 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D RHODO2019_17720 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RHODO2019_17725 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RHODO2019_17730 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RHODO2019_08365 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RHODO2019_10180 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RHODO2019_08390 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:rant00790]
D RHODO2019_14960 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D RHODO2019_14950 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D RHODO2019_14945 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D RHODO2019_14955 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D RHODO2019_15060 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D RHODO2019_11425 bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D RHODO2019_07020 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D RHODO2019_16345 aminodeoxychorismate/anthranilate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D RHODO2019_13055 aminodeoxychorismate synthase component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D RHODO2019_00770 aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D RHODO2019_12460 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D RHODO2019_14200 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D RHODO2019_14225 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D RHODO2019_14215 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D RHODO2019_13140 molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D RHODO2019_14505 molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D RHODO2019_11435 molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:rant00670]
D RHODO2019_02725 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RHODO2019_03820 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RHODO2019_02680 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D RHODO2019_02685 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RHODO2019_06990 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RHODO2019_10180 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RHODO2019_12625 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D RHODO2019_05145 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D RHODO2019_05140 thyX; FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D RHODO2019_01565 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D RHODO2019_09925 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D RHODO2019_13150 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:rant00860]
D RHODO2019_04220 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RHODO2019_01730 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D RHODO2019_01765 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RHODO2019_01745 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RHODO2019_01735 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D RHODO2019_05660 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D RHODO2019_05665 protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]
D RHODO2019_07290 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D RHODO2019_05670 chlorite dismutase family protein K00435 hemQ; hydrogen peroxide-dependent heme synthase [EC:1.3.98.5]
D RHODO2019_01740 bifunctional uroporphyrinogen-III C-methyltransferase/uroporphyrinogen-III synthase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D RHODO2019_04945 cobA; uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D RHODO2019_07110 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RHODO2019_07130 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RHODO2019_04940 sirohydrochlorin chelatase K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D RHODO2019_17845 sirohydrochlorin chelatase K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D RHODO2019_04720 cobI; precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D RHODO2019_04740 cobJ; precorrin-3B C(17)-methyltransferase K13541 cbiGH-cobJ; cobalt-precorrin 5A hydrolase / cobalt-factor III methyltransferase / precorrin-3B C17-methyltransferase [EC:3.7.1.12 2.1.1.272 2.1.1.131]
D RHODO2019_04725 cobM; precorrin-4 C(11)-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D RHODO2019_04730 cobalt-precorrin-5B (C(1))-methyltransferase K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D RHODO2019_04735 cbiE; precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D RHODO2019_04935 precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D RHODO2019_04715 cobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D RHODO2019_04690 cobN; cobaltochelatase subunit CobN K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2]
D RHODO2019_03880 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D RHODO2019_04710 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D RHODO2019_04655 cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D RHODO2019_10395 cobalamin biosynthesis protein K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D RHODO2019_10160 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D RHODO2019_10170 adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D RHODO2019_10165 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D RHODO2019_10370 bifunctional RNase H/acid phosphatase K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73]
D RHODO2019_04705 magnesium chelatase subunit D family protein K03404 chlD; magnesium chelatase subunit D [EC:6.6.1.1]
D RHODO2019_07790 sigma 54-interacting transcriptional regulator K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1]
D RHODO2019_07970 TIGR03618 family F420-dependent PPOX class oxidoreductase K23825 K23825; F420H(2)-dependent biliverdin reductase [EC:1.3.98.-]
D RHODO2019_15890 ferritin K22336 bfrB; bacterioferritin B [EC:1.16.3.1]
D RHODO2019_18950 multicopper oxidase family protein K22552 mmcO; multicopper oxidase [EC:1.16.3.1]
D RHODO2019_01150 multicopper oxidase family protein K22552 mmcO; multicopper oxidase [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rant00130]
D RHODO2019_00940 acyl-CoA thioesterase K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
D RHODO2019_01915 demethylmenaquinone methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D RHODO2019_01880 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D RHODO2019_01875 thiamine pyrophosphate-binding protein K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D RHODO2019_01860 o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D RHODO2019_01835 menE; o-succinylbenzoate--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D RHODO2019_01855 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D RHODO2019_08205 PaaI family thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D RHODO2019_01830 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D RHODO2019_17165 NmrA family NAD(P)-binding protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:rant00900]
D RHODO2019_05630 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RHODO2019_04625 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D RHODO2019_14820 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D RHODO2019_13025 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D RHODO2019_14815 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D RHODO2019_04635 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D RHODO2019_12700 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D RHODO2019_03970 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_05765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_11600 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_12890 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_17765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_05410 idi; isopentenyl-diphosphate Delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D RHODO2019_09930 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D RHODO2019_12775 isoprenyl transferase K12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D RHODO2019_11155 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:rant00906]
D RHODO2019_09950 phytoene/squalene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D RHODO2019_09935 crtI; phytoene desaturase family protein K10027 crtI; phytoene desaturase [EC:1.3.99.26 1.3.99.28 1.3.99.29 1.3.99.31]
D RHODO2019_07185 lycopene cyclase family protein K06443 lcyB; lycopene beta-cyclase [EC:5.5.1.19]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation [PATH:rant00903]
D RHODO2019_02855 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RHODO2019_03425 LLM class flavin-dependent oxidoreductase K14733 limB; limonene 1,2-monooxygenase [EC:1.14.13.107]
C 00907 Pinene, camphor and geraniol degradation [PATH:rant00907]
D RHODO2019_02045 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RHODO2019_05760 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RHODO2019_08280 NAD(P)-dependent oxidoreductase K13775 atuG; citronellol/citronellal dehydrogenase
D RHODO2019_14460 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D RHODO2019_07105 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics [PATH:rant01059]
D RHODO2019_13535 epoxide hydrolase 1 K21159 sgcF; epoxide hydrolase
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:rant00523]
D RHODO2019_15645 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RHODO2019_03460 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RHODO2019_12065 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RHODO2019_03465 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D RHODO2019_17170 NAD-dependent epimerase/dehydratase family protein K17947 wbiB; dTDP-L-rhamnose 4-epimerase [EC:5.1.3.25]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D RHODO2019_01880 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D RHODO2019_03460 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:rant00946]
D RHODO2019_09330 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
D RHODO2019_13760 pucL; urate oxidase K00365 uaZ; urate oxidase [EC:1.7.3.3]
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:rant00332]
D RHODO2019_11370 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D RHODO2019_11345 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:rant00261]
D RHODO2019_15355 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RHODO2019_15350 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RHODO2019_05155 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RHODO2019_05095 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:rant00521]
D RHODO2019_10005 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RHODO2019_17360 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RHODO2019_17515 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RHODO2019_11865 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RHODO2019_16635 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D RHODO2019_05550 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RHODO2019_09570 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RHODO2019_15645 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RHODO2019_03460 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RHODO2019_12065 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D RHODO2019_03465 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D RHODO2019_10005 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RHODO2019_17360 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RHODO2019_17515 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:rant00525]
D RHODO2019_15645 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RHODO2019_03460 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:rant00401]
D RHODO2019_15555 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D RHODO2019_09615 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RHODO2019_10385 cobC; Rv2231c family pyridoxal phosphate-dependent protein CobC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RHODO2019_15590 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis [PATH:rant00405]
D RHODO2019_18205 flavin-dependent oxidoreductase K20940 phzS; 5-methylphenazine-1-carboxylate 1-monooxygenase [EC:1.14.13.218]
D RHODO2019_09540 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D RHODO2019_10665 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RHODO2019_05225 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RHODO2019_17760 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D RHODO2019_10675 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:rant00999]
D RHODO2019_06965 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RHODO2019_09330 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:rant00362]
D RHODO2019_00240 pcaD; 3-oxoadipate enol-lactonase K14727 pcaL; 3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase [EC:3.1.1.24 4.1.1.44]
D RHODO2019_06330 3-oxoacid CoA-transferase subunit A K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
D RHODO2019_06325 3-oxoacid CoA-transferase subunit B K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6]
D RHODO2019_03140 4-oxalocrotonate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D RHODO2019_16900 4-oxalocrotonate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D RHODO2019_17050 4-oxalocrotonate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D RHODO2019_00250 pcaG; protocatechuate 3,4-dioxygenase subunit alpha K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D RHODO2019_00255 pcaH; protocatechuate 3,4-dioxygenase subunit beta K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
D RHODO2019_00245 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
D RHODO2019_13285 NAD(P)/FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D RHODO2019_00315 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
D RHODO2019_00940 acyl-CoA thioesterase K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
D RHODO2019_05760 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RHODO2019_06250 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RHODO2019_06255 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RHODO2019_00435 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D RHODO2019_02045 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RHODO2019_03940 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D RHODO2019_17315 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D RHODO2019_03970 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_05765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_11600 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_12890 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_17765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_00955 boxB; benzoyl-CoA 2,3-epoxidase subunit BoxB K15512 boxB; benzoyl-CoA 2,3-epoxidase subunit B [EC:1.14.13.208]
D RHODO2019_00985 boxC; 2,3-epoxybenzoyl-CoA dihydrolase K15513 boxC; benzoyl-CoA-dihydrodiol lyase [EC:4.1.2.44]
C 00627 Aminobenzoate degradation [PATH:rant00627]
D RHODO2019_13255 NAD(P)/FAD-dependent oxidoreductase K10215 ethA; monooxygenase [EC:1.14.13.-]
D RHODO2019_03045 nitrile hydratase subunit alpha K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84]
D RHODO2019_05815 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_05820 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_07785 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_13235 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_04460 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D RHODO2019_02045 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
C 00364 Fluorobenzoate degradation [PATH:rant00364]
D RHODO2019_15265 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D RHODO2019_15585 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D RHODO2019_15830 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D RHODO2019_16850 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D RHODO2019_03045 nitrile hydratase subunit alpha K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84]
C 00625 Chloroalkane and chloroalkene degradation [PATH:rant00625]
D RHODO2019_04830 haloalkane dehalogenase K01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5]
D RHODO2019_07315 haloalkane dehalogenase K01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5]
D RHODO2019_15865 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D RHODO2019_02855 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D RHODO2019_13735 fdhA; formaldehyde dehydrogenase, glutathione-independent K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46]
D RHODO2019_14350 mdo; NDMA-dependent methanol dehydrogenase K17067 mdo; formaldehyde dismutase / methanol dehydrogenase [EC:1.2.98.1 1.1.99.37]
D RHODO2019_14415 alpha/beta hydrolase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3]
D RHODO2019_05925 haloacid dehalogenase type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:rant00361]
D RHODO2019_04830 haloalkane dehalogenase K01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5]
D RHODO2019_07315 haloalkane dehalogenase K01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5]
D RHODO2019_15265 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D RHODO2019_15585 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D RHODO2019_15830 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D RHODO2019_16850 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D RHODO2019_05925 haloacid dehalogenase type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D RHODO2019_14415 alpha/beta hydrolase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3]
C 00623 Toluene degradation [PATH:rant00623]
D RHODO2019_15265 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D RHODO2019_15585 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D RHODO2019_15830 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D RHODO2019_16850 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
D RHODO2019_03140 4-oxalocrotonate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D RHODO2019_16900 4-oxalocrotonate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D RHODO2019_17050 4-oxalocrotonate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation [PATH:rant00633]
D RHODO2019_17405 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation [PATH:rant00643]
D RHODO2019_03045 nitrile hydratase subunit alpha K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84]
D RHODO2019_05815 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_05820 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_07785 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RHODO2019_13235 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:rant00930]
D RHODO2019_02045 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D RHODO2019_05760 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
D RHODO2019_18180 NAD(P)/FAD-dependent oxidoreductase K14520 hapE; 4-hydroxyacetophenone monooxygenase [EC:1.14.13.84]
C 00621 Dioxin degradation
D RHODO2019_03140 4-oxalocrotonate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D RHODO2019_16900 4-oxalocrotonate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D RHODO2019_17050 4-oxalocrotonate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation [PATH:rant00626]
D RHODO2019_15865 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
D RHODO2019_00250 pcaG; protocatechuate 3,4-dioxygenase subunit alpha K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D RHODO2019_00255 pcaH; protocatechuate 3,4-dioxygenase subunit beta K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
C 00365 Furfural degradation
C 00984 Steroid degradation
D RHODO2019_02605 GMC family oxidoreductase K03333 choD; cholesterol oxidase [EC:1.1.3.6]
D RHODO2019_00340 GMC family oxidoreductase K03333 choD; cholesterol oxidase [EC:1.1.3.6]
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:rant03020]
D RHODO2019_02220 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RHODO2019_02225 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RHODO2019_02395 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RHODO2019_06955 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
D RHODO2019_14250 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:rant03010]
D RHODO2019_09440 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RHODO2019_02285 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RHODO2019_02390 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RHODO2019_02340 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RHODO2019_16680 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RHODO2019_02235 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RHODO2019_02325 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RHODO2019_02475 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RHODO2019_02250 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RHODO2019_02385 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RHODO2019_02230 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RHODO2019_02380 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RHODO2019_02320 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RHODO2019_05080 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RHODO2019_04505 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RHODO2019_02300 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RHODO2019_13200 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RHODO2019_16690 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RHODO2019_02275 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RHODO2019_11290 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RHODO2019_02145 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RHODO2019_02270 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RHODO2019_02255 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RHODO2019_02260 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RHODO2019_02315 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RHODO2019_02330 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RHODO2019_02160 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RHODO2019_16695 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RHODO2019_02155 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RHODO2019_02140 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RHODO2019_02470 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RHODO2019_02305 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RHODO2019_02350 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RHODO2019_02290 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RHODO2019_02400 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RHODO2019_02335 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RHODO2019_04525 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RHODO2019_08985 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RHODO2019_11385 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RHODO2019_02280 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RHODO2019_02265 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RHODO2019_02310 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RHODO2019_13000 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D RHODO2019_11380 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RHODO2019_04320 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RHODO2019_02295 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RHODO2019_02345 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RHODO2019_03800 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RHODO2019_04390 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RHODO2019_02105 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RHODO2019_16450 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RHODO2019_08990 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RHODO2019_02375 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D RHODO2019_03900 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RHODO2019_03905 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RHODO2019_03910 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:rant00970]
D RHODO2019_04220 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RHODO2019_04130 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RHODO2019_15560 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RHODO2019_04165 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RHODO2019_04125 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RHODO2019_06850 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RHODO2019_06795 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RHODO2019_11130 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RHODO2019_06595 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RHODO2019_15820 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RHODO2019_04795 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D RHODO2019_14810 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RHODO2019_13045 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RHODO2019_06990 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RHODO2019_11430 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RHODO2019_16605 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RHODO2019_09760 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RHODO2019_14895 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RHODO2019_15580 phosphatidylglycerol lysyltransferase domain-containing protein K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RHODO2019_03770 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RHODO2019_04975 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RHODO2019_06705 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RHODO2019_08975 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RHODO2019_08970 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RHODO2019_08880 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RHODO2019_02765 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:rant03060]
D RHODO2019_02355 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RHODO2019_02130 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RHODO2019_07075 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RHODO2019_06670 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RHODO2019_06675 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RHODO2019_06665 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RHODO2019_16465 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RHODO2019_03590 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RHODO2019_13595 secA2; accessory Sec system translocase SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RHODO2019_04495 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RHODO2019_04475 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RHODO2019_02980 arsA; arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D RHODO2019_10015 ArsA family ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D RHODO2019_07940 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D RHODO2019_13655 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D RHODO2019_12280 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D RHODO2019_07945 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D RHODO2019_09720 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:rant04122]
D RHODO2019_04085 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RHODO2019_03265 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RHODO2019_13345 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RHODO2019_04090 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RHODO2019_14215 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D RHODO2019_14200 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D RHODO2019_14205 MoaD/ThiS family protein K03636 moaD; sulfur-carrier protein
D RHODO2019_12140 moeZ; adenylyltransferase/sulfurtransferase MoeZ K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D RHODO2019_14225 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D RHODO2019_14690 thiS; sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome [PATH:rant03050]
D RHODO2019_07880 arc; proteasome ATPase K13527 mpa; proteasome-associated ATPase
D RHODO2019_07920 prcA; proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D RHODO2019_07915 prcB; proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
C 03018 RNA degradation [PATH:rant03018]
D RHODO2019_11390 translation initiation factor IF-2 N-terminal domain-containing protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D RHODO2019_12935 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RHODO2019_05085 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RHODO2019_14345 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RHODO2019_11350 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RHODO2019_03795 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RHODO2019_15020 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D RHODO2019_00405 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RHODO2019_02555 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RHODO2019_14495 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RHODO2019_04265 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RHODO2019_16540 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:rant03030]
D RHODO2019_10070 DEDD exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RHODO2019_09700 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RHODO2019_15445 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RHODO2019_15110 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RHODO2019_11295 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RHODO2019_10785 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RHODO2019_16440 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RHODO2019_16700 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RHODO2019_10725 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RHODO2019_11595 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RHODO2019_16685 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RHODO2019_03395 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RHODO2019_10370 bifunctional RNase H/acid phosphatase K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73]
D RHODO2019_04535 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RHODO2019_09450 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RHODO2019_04110 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:rant03410]
D RHODO2019_04315 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RHODO2019_08910 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D RHODO2019_04400 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RHODO2019_15975 Fpg/Nei family DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RHODO2019_17460 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RHODO2019_05200 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D RHODO2019_11500 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D RHODO2019_11250 DNA-3-methyladenine glycosylase 2 family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RHODO2019_12660 helix-turn-helix domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RHODO2019_12335 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D RHODO2019_12910 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D RHODO2019_02760 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RHODO2019_17145 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RHODO2019_16665 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RHODO2019_09450 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RHODO2019_04110 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:rant03420]
D RHODO2019_12970 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RHODO2019_05425 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D RHODO2019_09005 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D RHODO2019_09410 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D RHODO2019_07040 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D RHODO2019_02635 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RHODO2019_12060 ATP-dependent DNA helicase UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RHODO2019_12105 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RHODO2019_09450 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RHODO2019_04110 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RHODO2019_14250 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C 03430 Mismatch repair [PATH:rant03430]
D RHODO2019_02635 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RHODO2019_12060 ATP-dependent DNA helicase UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RHODO2019_12105 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RHODO2019_12710 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RHODO2019_12715 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RHODO2019_11595 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RHODO2019_16685 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RHODO2019_09700 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RHODO2019_10785 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RHODO2019_16440 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RHODO2019_15445 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RHODO2019_11295 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RHODO2019_15110 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RHODO2019_10070 DEDD exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RHODO2019_04110 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:rant03440]
D RHODO2019_11595 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RHODO2019_16685 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RHODO2019_16430 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D RHODO2019_11160 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RHODO2019_15415 recR; recombination mediator RecR K06187 recR; recombination protein RecR
D RHODO2019_05250 recA; recombinase RecA K03553 recA; recombination protein RecA
D RHODO2019_09450 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RHODO2019_06655 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D RHODO2019_06660 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RHODO2019_06650 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RHODO2019_04330 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RHODO2019_07375 UvrD-helicase domain-containing protein K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D RHODO2019_07370 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D RHODO2019_07380 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D RHODO2019_09700 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RHODO2019_10785 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RHODO2019_16440 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RHODO2019_15445 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RHODO2019_11295 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RHODO2019_15110 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RHODO2019_10070 DEDD exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RHODO2019_06975 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining [PATH:rant03450]
D RHODO2019_08455 Ku protein K10979 ku; DNA end-binding protein Ku
D RHODO2019_08175 ligD; non-homologous end-joining DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D RHODO2019_08180 ligD; non-homologous end-joining DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:rant03250]
D RHODO2019_16380 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:rant02010]
D RHODO2019_10545 aliphatic sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RHODO2019_10540 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D RHODO2019_10550 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RHODO2019_14185 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D RHODO2019_14180 ABC transporter permease K02018 modB; molybdate transport system permease protein
D RHODO2019_14175 ATP-binding cassette domain-containing protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D RHODO2019_01100 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D RHODO2019_01105 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D RHODO2019_01110 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D RHODO2019_12455 thiamine ABC transporter substrate-binding protein K02064 thiB; thiamine transport system substrate-binding protein
D RHODO2019_12450 iron ABC transporter permease K02063 thiP; thiamine transport system permease protein
D RHODO2019_12445 ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D RHODO2019_03725 ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D RHODO2019_14295 glycine betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D RHODO2019_03715 ABC transporter permease subunit K05846 opuBD; osmoprotectant transport system permease protein
D RHODO2019_03720 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D RHODO2019_14300 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D RHODO2019_14310 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D RHODO2019_03710 ATP-binding cassette domain-containing protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D RHODO2019_14305 ATP-binding cassette domain-containing protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D RHODO2019_08955 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RHODO2019_09335 ABC transporter substrate-binding protein K10232 aglE; alpha-glucoside transport system substrate-binding protein
D RHODO2019_09340 sugar ABC transporter permease K10233 aglF; alpha-glucoside transport system permease protein
D RHODO2019_09345 carbohydrate ABC transporter permease K10234 aglG; alpha-glucoside transport system permease protein
D RHODO2019_02180 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RHODO2019_02185 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RHODO2019_02190 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RHODO2019_02195 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RHODO2019_02200 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RHODO2019_02205 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RHODO2019_02170 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RHODO2019_02175 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RHODO2019_02165 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RHODO2019_02800 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D RHODO2019_02810 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D RHODO2019_02805 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D RHODO2019_18465 sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D RHODO2019_18455 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RHODO2019_18460 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RHODO2019_02920 substrate-binding domain-containing protein K10543 xylF; D-xylose transport system substrate-binding protein
D RHODO2019_02930 ABC transporter permease K10544 xylH; D-xylose transport system permease protein
D RHODO2019_02925 ATP-binding cassette domain-containing protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D RHODO2019_00805 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D RHODO2019_00810 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D RHODO2019_00815 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D RHODO2019_00820 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D RHODO2019_13445 putative selenate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D RHODO2019_13435 hypothetical protein K02042 phnE; phosphonate transport system permease protein
D RHODO2019_13440 ATP-binding cassette domain-containing protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D RHODO2019_05270 glutamate ABC transporter substrate-binding protein K10005 gluB; glutamate transport system substrate-binding protein
D RHODO2019_05265 amino acid ABC transporter permease K10006 gluC; glutamate transport system permease protein
D RHODO2019_05260 amino acid ABC transporter permease K10007 gluD; glutamate transport system permease protein
D RHODO2019_05275 amino acid ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D RHODO2019_09065 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RHODO2019_09475 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RHODO2019_09060 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RHODO2019_09455 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RHODO2019_14435 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RHODO2019_09055 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RHODO2019_09460 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RHODO2019_14430 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RHODO2019_09050 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_09465 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_14440 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_09045 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_09470 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_14445 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_18350 substrate-binding domain-containing protein K11959 urtA; urea transport system substrate-binding protein
D RHODO2019_04750 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D RHODO2019_04755 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D RHODO2019_04760 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D RHODO2019_04765 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D RHODO2019_04770 dipeptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D RHODO2019_11950 ABC transporter family substrate-binding protein K13889 gsiB; glutathione transport system substrate-binding protein
D RHODO2019_11935 ABC transporter permease K13890 gsiC; glutathione transport system permease protein
D RHODO2019_11940 ABC transporter permease K13891 gsiD; glutathione transport system permease protein
D RHODO2019_11945 ABC transporter ATP-binding protein K13892 gsiA; glutathione transport system ATP-binding protein
D RHODO2019_00970 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D RHODO2019_15650 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D RHODO2019_15655 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D RHODO2019_11910 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D RHODO2019_11915 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D RHODO2019_08225 cydD; thiol reductant ABC exporter subunit CydD K16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD
C 02060 Phosphotransferase system (PTS)
D RHODO2019_03210 ptsP; phosphoenolpyruvate--protein phosphotransferase K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202]
C 03070 Bacterial secretion system [PATH:rant03070]
D RHODO2019_06670 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RHODO2019_06675 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RHODO2019_02130 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RHODO2019_07075 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RHODO2019_02355 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RHODO2019_06665 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RHODO2019_16465 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RHODO2019_03590 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RHODO2019_13595 secA2; accessory Sec system translocase SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RHODO2019_04475 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RHODO2019_04495 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RHODO2019_07940 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D RHODO2019_13655 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D RHODO2019_12280 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D RHODO2019_07945 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:rant02020]
D RHODO2019_01630 ATP-binding protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D RHODO2019_01635 response regulator transcription factor K07776 regX3; two-component system, OmpR family, response regulator RegX3
D RHODO2019_00805 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D RHODO2019_12285 trypsin-like peptidase domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107]
D RHODO2019_04570 FliA/WhiG family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
D RHODO2019_04435 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D RHODO2019_04440 response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D RHODO2019_04420 kdpA; potassium-transporting ATPase subunit KdpA K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D RHODO2019_04425 kdpB; potassium-transporting ATPase subunit KdpB K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D RHODO2019_04430 potassium-transporting ATPase subunit C K01548 kdpC; potassium-transporting ATPase KdpC subunit
D RHODO2019_07130 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RHODO2019_13185 ATP-binding protein K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]
D RHODO2019_13190 response regulator transcription factor K07669 mprA; two-component system, OmpR family, response regulator MprA
D RHODO2019_03365 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D RHODO2019_13180 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D RHODO2019_03570 mtrB; MtrAB system histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D RHODO2019_03565 mtrA; MtrAB system response regulator MtrA K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D RHODO2019_16445 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RHODO2019_00835 HAMP domain-containing histidine kinase K07655 prrB; two-component system, OmpR family, sensor histidine kinase PrrB [EC:2.7.13.3]
D RHODO2019_00830 response regulator transcription factor K07671 prrA; two-component system, OmpR family, response regulator PrrA
D RHODO2019_08895 CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D RHODO2019_09020 CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D RHODO2019_11990 aldolase/citrate lyase family protein K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D RHODO2019_03705 NADP-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D RHODO2019_14230 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D RHODO2019_08510 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D RHODO2019_08505 narH; nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D RHODO2019_08495 narI; respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D RHODO2019_08500 narJ; nitrate reductase molybdenum cofactor assembly chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
D RHODO2019_11115 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D RHODO2019_11110 response regulator transcription factor K07693 desR; two-component system, NarL family, response regulator DesR
D RHODO2019_08615 GAF domain-containing protein K07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3]
D RHODO2019_08610 response regulator transcription factor K07695 devR; two-component system, NarL family, response regulator DevR
D RHODO2019_15185 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RHODO2019_15180 type II secretion system F family protein K12510 tadB; tight adherence protein B
D RHODO2019_04490 [protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D RHODO2019_04485 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1
D RHODO2019_10245 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RHODO2019_10275 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RHODO2019_03970 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_05765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_11600 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_12890 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_17765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_00645 cation:dicarboxylase symporter family transporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D RHODO2019_15255 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RHODO2019_08235 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RHODO2019_08230 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RHODO2019_00030 low molecular weight phosphatase family protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D RHODO2019_00210 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D RHODO2019_15095 glycoside hydrolase family 6 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:rant02024]
D RHODO2019_09540 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RHODO2019_09985 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RHODO2019_04440 response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D RHODO2019_16565 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D RHODO2019_05940 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D RHODO2019_07445 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D RHODO2019_05060 ABC transporter permease subunit K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D RHODO2019_07435 ABC transporter permease subunit K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D RHODO2019_05055 ABC transporter permease subunit K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D RHODO2019_07440 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D RHODO2019_07430 ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D RHODO2019_09065 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RHODO2019_09475 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RHODO2019_09060 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RHODO2019_09455 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RHODO2019_14435 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RHODO2019_09055 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RHODO2019_09460 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RHODO2019_14430 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RHODO2019_09050 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_09465 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_14440 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_09045 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_09470 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_14445 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_06225 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_10035 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_11885 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_14590 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_15825 acyl--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_16840 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_15255 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RHODO2019_07010 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RHODO2019_04750 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D RHODO2019_04755 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D RHODO2019_04760 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D RHODO2019_04765 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D RHODO2019_04770 dipeptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D RHODO2019_05845 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RHODO2019_06680 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RHODO2019_15405 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RHODO2019_05850 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RHODO2019_15400 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RHODO2019_05855 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RHODO2019_15395 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RHODO2019_05860 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RHODO2019_15390 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RHODO2019_05865 ATP-binding cassette domain-containing protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D RHODO2019_15385 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D RHODO2019_16465 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RHODO2019_02130 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RHODO2019_07075 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RHODO2019_02355 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RHODO2019_06665 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RHODO2019_03590 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RHODO2019_13595 secA2; accessory Sec system translocase SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RHODO2019_04475 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RHODO2019_04495 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
D RHODO2019_18465 sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
C 02040 Flagellar assembly [PATH:rant02040]
D RHODO2019_05540 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D RHODO2019_04570 FliA/WhiG family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D RHODO2019_12935 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:rant04980]
D RHODO2019_03880 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D RHODO2019_02915 meaB; methylmalonyl Co-A mutase-associated GTPase MeaB K07588 MMAA; GTPase [EC:3.6.5.-]
D RHODO2019_03975 meaB; methylmalonyl Co-A mutase-associated GTPase MeaB K07588 MMAA; GTPase [EC:3.6.5.-]
D RHODO2019_02905 methylmalonyl-CoA mutase subunit beta K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D RHODO2019_02910 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D RHODO2019_12625 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:rant01501]
D RHODO2019_16200 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RHODO2019_04750 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D RHODO2019_04755 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D RHODO2019_04760 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D RHODO2019_04765 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D RHODO2019_04770 dipeptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D RHODO2019_08245 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1
D RHODO2019_08240 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RHODO2019_09840 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:rant01502]
D RHODO2019_04285 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RHODO2019_15755 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RHODO2019_02520 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RHODO2019_09830 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RHODO2019_09825 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RHODO2019_09810 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rant01503]
D RHODO2019_15425 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RHODO2019_16495 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RHODO2019_12285 trypsin-like peptidase domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107]
D RHODO2019_16380 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:rant01000]
C 01001 Protein kinases [BR:rant01001]
D RHODO2019_04960 serine/threonine protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D RHODO2019_02615 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RHODO2019_02620 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RHODO2019_03115 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RHODO2019_09980 pknB; Stk1 family PASTA domain-containing Ser/Thr kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RHODO2019_16335 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RHODO2019_17040 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RHODO2019_17485 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RHODO2019_01350 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RHODO2019_14500 protein kinase K08884 K08884; serine/threonine protein kinase, bacterial [EC:2.7.11.1]
D RHODO2019_17120 polysaccharide biosynthesis tyrosine autokinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D RHODO2019_01630 ATP-binding protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D RHODO2019_04435 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D RHODO2019_13185 ATP-binding protein K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]
D RHODO2019_03570 mtrB; MtrAB system histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D RHODO2019_00835 HAMP domain-containing histidine kinase K07655 prrB; two-component system, OmpR family, sensor histidine kinase PrrB [EC:2.7.13.3]
D RHODO2019_12830 HAMP domain-containing histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RHODO2019_11115 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D RHODO2019_08615 GAF domain-containing protein K07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3]
D RHODO2019_15965 histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D RHODO2019_03665 histidine kinase N-terminal domain-containing protein K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:rant01009]
D RHODO2019_03555 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RHODO2019_16320 protein phosphatase 2C domain-containing protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D RHODO2019_11825 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:rant01002]
D RHODO2019_09720 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RHODO2019_13995 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RHODO2019_08200 C1 family peptidase K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40]
D RHODO2019_13115 pcp; pyroglutamyl-peptidase I K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D RHODO2019_02610 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RHODO2019_10050 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D RHODO2019_16945 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D RHODO2019_07260 NlpC/P60 family protein K21473 ripA; peptidoglycan DL-endopeptidase RipA [EC:3.4.-.-]
D RHODO2019_00715 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RHODO2019_09510 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RHODO2019_13865 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RHODO2019_02505 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RHODO2019_10130 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D RHODO2019_01545 type 1 glutamine amidotransferase K05520 yhbO; deglycase [EC:3.5.1.124]
D RHODO2019_13370 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein
D RHODO2019_11520 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RHODO2019_12085 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D RHODO2019_10185 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RHODO2019_12365 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RHODO2019_04900 Zn-dependent hydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D RHODO2019_02365 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RHODO2019_04650 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RHODO2019_15210 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D RHODO2019_14965 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RHODO2019_02075 htpX; zinc metalloprotease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D RHODO2019_00860 M55 family metallopeptidase K16203 dppA1; D-amino peptidase [EC:3.4.11.-]
D RHODO2019_08245 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1
D RHODO2019_12285 trypsin-like peptidase domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107]
D RHODO2019_03365 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D RHODO2019_13180 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D RHODO2019_02435 mycP; type VII secretion-associated serine protease mycosin K14743 mycP; membrane-anchored mycosin MYCP [EC:3.4.21.-]
D RHODO2019_11545 prolyl oligopeptidase family serine peptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D RHODO2019_02775 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RHODO2019_14985 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RHODO2019_11470 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D RHODO2019_11475 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D RHODO2019_12015 PDZ domain-containing protein K07177 K07177; Lon-like protease
D RHODO2019_05345 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D RHODO2019_07975 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D RHODO2019_01865 PDZ domain-containing protein K08676 tri; tricorn protease [EC:3.4.21.-]
D RHODO2019_07920 prcA; proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D RHODO2019_07915 prcB; proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D RHODO2019_05870 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RHODO2019_16050 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D RHODO2019_07985 TldD/PmbA family protein K03568 tldD; TldD protein
C 01003 Glycosyltransferases [BR:rant01003]
D RHODO2019_08015 polyprenol monophosphomannose synthase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D RHODO2019_13065 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
D RHODO2019_10040 glycosyltransferase family 4 protein K13668 pimB; phosphatidyl-myo-inositol dimannoside synthase [EC:2.4.1.346]
D RHODO2019_12465 mannosyltransferase K13669 pimE; alpha-1,2-mannosyltransferase [EC:2.4.1.-]
D RHODO2019_04055 glycosyltransferase family 4 protein K16150 K16150; glycogen synthase [EC:2.4.1.11]
D RHODO2019_12310 glgA; glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D RHODO2019_03825 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D RHODO2019_09945 glycosyltransferase 87 family protein K13671 K13671; alpha-1,2-mannosyltransferase [EC:2.4.1.-]
D RHODO2019_09940 alpha-(1->6)-mannopyranosyltransferase A K14337 mptA; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D RHODO2019_07145 mptB; polyprenol phosphomannose-dependent alpha 1,6 mannosyltransferase MptB K14339 mptB; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D RHODO2019_15660 glycosyltransferase family 2 protein K16649 glft1; rhamnopyranosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,3/1,4-galactofuranosyltransferase [EC:2.4.1.287]
D RHODO2019_15725 glycosyltransferase K16650 glft2; galactofuranosylgalactofuranosylrhamnosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase [EC:2.4.1.288]
D RHODO2019_03470 glycosyltransferase family 2 protein K16870 wbbL; N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase [EC:2.4.1.289]
D RHODO2019_14750 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D RHODO2019_12350 glucosyl-3-phosphoglycerate synthase K13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:rant01005]
D RHODO2019_03825 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rant01011]
D RHODO2019_03885 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RHODO2019_01585 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RHODO2019_09805 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RHODO2019_09820 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RHODO2019_09835 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RHODO2019_04285 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RHODO2019_15755 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RHODO2019_02520 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RHODO2019_11780 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D RHODO2019_09825 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RHODO2019_09810 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RHODO2019_02995 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RHODO2019_07735 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RHODO2019_16520 murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D RHODO2019_09840 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RHODO2019_16330 penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A
D RHODO2019_02775 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RHODO2019_14985 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RHODO2019_10050 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D RHODO2019_16945 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D RHODO2019_07260 NlpC/P60 family protein K21473 ripA; peptidoglycan DL-endopeptidase RipA [EC:3.4.-.-]
D RHODO2019_06860 endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D RHODO2019_15425 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RHODO2019_16495 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:rant01004]
D RHODO2019_10665 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RHODO2019_10670 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RHODO2019_10680 beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RHODO2019_05225 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RHODO2019_17760 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RHODO2019_07415 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D RHODO2019_09495 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D RHODO2019_07280 fabG; 3-oxoacyl-ACP reductase FabG K11610 mabA; beta-ketoacyl ACP reductase [EC:1.1.1.100]
D RHODO2019_07285 fabI; enoyl-ACP reductase FabI K11611 inhA; meromycolic acid enoyl-[acyl-carrier-protein] reductase [EC:1.3.1.118]
D RHODO2019_00880 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26]
D RHODO2019_10300 fatty acid desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-]
D RHODO2019_11400 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_13070 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_15220 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RHODO2019_05390 acetoacetate--CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D RHODO2019_06225 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_10035 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_11885 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_14590 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_15825 acyl--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_16840 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_13675 acyl-CoA synthetase K12429 fadD36; fatty acid CoA ligase FadD36
D RHODO2019_13010 fatty acyl-AMP ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D RHODO2019_14060 AMP-binding protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D RHODO2019_15205 fatty acyl-CoA synthetase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D RHODO2019_12835 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:rant01008]
D RHODO2019_13555 type III polyketide synthase K16167 bpsA; alkylresorcinol/alkylpyrone synthase
D RHODO2019_13535 epoxide hydrolase 1 K21159 sgcF; epoxide hydrolase
D RHODO2019_13550 isoprenylcysteine carboxyl methyltransferase family protein K16168 bpsB; methyltransferase
C 01006 Prenyltransferases [BR:rant01006]
D RHODO2019_09930 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D RHODO2019_12775 isoprenyl transferase K12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D RHODO2019_11155 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RHODO2019_09950 phytoene/squalene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D RHODO2019_05300 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RHODO2019_01830 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D RHODO2019_07110 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:rant01007]
D RHODO2019_04220 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RHODO2019_08880 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RHODO2019_02765 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RHODO2019_14810 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RHODO2019_03770 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RHODO2019_13045 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RHODO2019_09760 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RHODO2019_11430 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RHODO2019_16605 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RHODO2019_14895 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RHODO2019_15580 phosphatidylglycerol lysyltransferase domain-containing protein K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RHODO2019_06795 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RHODO2019_06705 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RHODO2019_11130 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RHODO2019_15820 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RHODO2019_04975 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RHODO2019_06595 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RHODO2019_06850 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RHODO2019_08975 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RHODO2019_08970 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RHODO2019_00360 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D RHODO2019_01510 pyridoxal phosphate-dependent aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D RHODO2019_09615 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RHODO2019_10385 cobC; Rv2231c family pyridoxal phosphate-dependent protein CobC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RHODO2019_15590 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RHODO2019_09670 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D RHODO2019_13110 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RHODO2019_05735 rocD; ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D RHODO2019_08935 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RHODO2019_09675 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D RHODO2019_01765 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RHODO2019_10175 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RHODO2019_13950 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:rant00194]
D RHODO2019_03870 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RHODO2019_03865 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RHODO2019_03860 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RHODO2019_03855 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RHODO2019_03850 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RHODO2019_03845 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RHODO2019_03840 ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RHODO2019_03835 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:rant03000]
D RHODO2019_18575 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RHODO2019_12660 helix-turn-helix domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RHODO2019_08740 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D RHODO2019_18810 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D RHODO2019_02025 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D RHODO2019_04840 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RHODO2019_13250 TetR/AcrR family transcriptional regulator K21961 ethR; TetR/AcrR family transcriptional regulator, ethionamide resistance regulator
D RHODO2019_07220 TetR/AcrR family transcriptional regulator K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
D RHODO2019_14340 mftR; mycofactocin system transcriptional regulator K24699 mftR; TetR/AcrR family transcriptional regulator, regulator of mycofactocin system
D RHODO2019_01810 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RHODO2019_16705 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D RHODO2019_00420 helix-turn-helix transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D RHODO2019_02565 cobalamin B12-binding domain-containing protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D RHODO2019_17865 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D RHODO2019_11145 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RHODO2019_00765 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RHODO2019_15050 transcriptional repressor K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
D RHODO2019_05305 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D RHODO2019_15255 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RHODO2019_02960 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D RHODO2019_14155 metalloregulator ArsR/SmtB family transcription factor K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D RHODO2019_11140 metalloregulator ArsR/SmtB family transcription factor K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
D RHODO2019_05185 helix-turn-helix transcriptional regulator K27043 clgR; XRE family transcriptional regulator, stress-response regulator
D RHODO2019_04410 helix-turn-helix transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D RHODO2019_09310 metal-dependent transcriptional regulator K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D RHODO2019_08240 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D RHODO2019_03290 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RHODO2019_01725 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D RHODO2019_17975 helix-turn-helix domain-containing protein K27097 espR; ESX-1-secreted protein regulator
D RHODO2019_18280 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
D RHODO2019_02560 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RHODO2019_03510 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RHODO2019_03670 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RHODO2019_14705 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RHODO2019_14740 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RHODO2019_15305 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RHODO2019_17870 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RHODO2019_01480 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RHODO2019_12050 WhiB family transcriptional regulator K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RHODO2019_07560 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D RHODO2019_16485 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RHODO2019_14825 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D RHODO2019_08925 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D RHODO2019_11215 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D RHODO2019_14670 transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RHODO2019_13330 PaaX domain-containing protein, C-domain protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D RHODO2019_00980 PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D RHODO2019_06910 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D RHODO2019_16570 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D RHODO2019_05355 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D RHODO2019_09855 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:rant03021]
D RHODO2019_14250 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D RHODO2019_02395 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RHODO2019_02220 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RHODO2019_02225 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RHODO2019_06955 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RHODO2019_05540 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D RHODO2019_09290 sigma-70 family RNA polymerase sigma factor K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D RHODO2019_02580 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RHODO2019_03650 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RHODO2019_05950 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RHODO2019_06575 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RHODO2019_12295 sigE; RNA polymerase sigma factor SigE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RHODO2019_16515 sigM; RNA polymerase sigma factor SigM K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RHODO2019_17880 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RHODO2019_18515 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RHODO2019_00270 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RHODO2019_01395 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RHODO2019_01705 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RHODO2019_04570 FliA/WhiG family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
D RHODO2019_05000 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D RHODO2019_06900 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D RHODO2019_02135 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D RHODO2019_02875 GreA/GreB family elongation factor K03624 greA; transcription elongation factor GreA
D RHODO2019_12855 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D RHODO2019_03795 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:rant03019]
D RHODO2019_11390 translation initiation factor IF-2 N-terminal domain-containing protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D RHODO2019_04395 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RHODO2019_15020 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D RHODO2019_11655 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RHODO2019_14345 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RHODO2019_11350 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RHODO2019_12935 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RHODO2019_05085 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RHODO2019_03795 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RHODO2019_00405 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RHODO2019_02555 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RHODO2019_14495 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RHODO2019_04265 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RHODO2019_16540 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D RHODO2019_07045 rapZ; RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ
D RHODO2019_07950 RNA helicase K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6]
D RHODO2019_05405 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D RHODO2019_12535 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:rant03011]
D RHODO2019_09440 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RHODO2019_02285 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RHODO2019_02390 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RHODO2019_02340 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RHODO2019_16680 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RHODO2019_02235 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RHODO2019_02325 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RHODO2019_02475 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RHODO2019_02250 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RHODO2019_02385 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RHODO2019_02230 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RHODO2019_02380 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RHODO2019_02320 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RHODO2019_05080 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RHODO2019_04505 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RHODO2019_02300 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RHODO2019_13200 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RHODO2019_16690 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RHODO2019_02275 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RHODO2019_11290 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RHODO2019_02145 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RHODO2019_02270 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RHODO2019_02255 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RHODO2019_02260 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RHODO2019_02315 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RHODO2019_02330 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RHODO2019_16695 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RHODO2019_02155 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RHODO2019_02140 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RHODO2019_02160 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RHODO2019_02470 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RHODO2019_02305 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RHODO2019_02350 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RHODO2019_02290 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RHODO2019_02400 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RHODO2019_02335 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RHODO2019_04525 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RHODO2019_08985 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RHODO2019_11385 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RHODO2019_02280 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RHODO2019_02265 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RHODO2019_02310 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RHODO2019_11380 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RHODO2019_04320 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RHODO2019_02295 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RHODO2019_02345 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RHODO2019_03800 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RHODO2019_04390 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RHODO2019_02105 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RHODO2019_16450 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RHODO2019_08990 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RHODO2019_02375 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D RHODO2019_13000 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D RHODO2019_03910 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RHODO2019_03900 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RHODO2019_03905 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:rant03009]
D RHODO2019_04395 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RHODO2019_04960 serine/threonine protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D RHODO2019_11655 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RHODO2019_11175 era; GTPase Era K03595 era; GTPase
D RHODO2019_11375 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D RHODO2019_05000 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D RHODO2019_06900 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D RHODO2019_02135 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D RHODO2019_13030 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D RHODO2019_06995 rRNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D RHODO2019_04370 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D RHODO2019_11205 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D RHODO2019_16475 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RHODO2019_09850 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D RHODO2019_13060 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D RHODO2019_08845 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D RHODO2019_12315 methyltransferase domain-containing protein K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D RHODO2019_14805 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D RHODO2019_13100 methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D RHODO2019_04615 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D RHODO2019_14635 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RHODO2019_08790 rRNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RHODO2019_09715 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D RHODO2019_02540 rimI; ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D RHODO2019_13135 GNAT family N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D RHODO2019_04515 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D RHODO2019_05175 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D RHODO2019_11390 translation initiation factor IF-2 N-terminal domain-containing protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D RHODO2019_06855 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D RHODO2019_14345 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RHODO2019_03630 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RHODO2019_08780 der; ribosome biogenesis GTPase Der K03977 engA; GTPase
D RHODO2019_05335 hflX; GTPase HflX K03665 hflX; GTPase
D RHODO2019_03815 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RHODO2019_06690 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RHODO2019_05020 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
D RHODO2019_04995 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D RHODO2019_16290 RNA-binding S4 domain-containing protein K14761 rlbA; ribosome-associated protein
D RHODO2019_11325 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
D RHODO2019_11185 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
D RHODO2019_12615 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
D RHODO2019_04385 YceD family protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:rant03016]
D RHODO2019_04220 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RHODO2019_04975 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RHODO2019_09760 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RHODO2019_16605 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RHODO2019_13045 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RHODO2019_03770 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RHODO2019_14895 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RHODO2019_15580 phosphatidylglycerol lysyltransferase domain-containing protein K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RHODO2019_06795 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RHODO2019_06850 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RHODO2019_11130 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RHODO2019_06595 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RHODO2019_15820 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RHODO2019_14810 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RHODO2019_11430 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RHODO2019_06705 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RHODO2019_08975 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RHODO2019_08970 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RHODO2019_08880 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RHODO2019_02765 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RHODO2019_09285 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D RHODO2019_11195 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RHODO2019_07870 tRNA (adenine-N1)-methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D RHODO2019_17290 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D RHODO2019_02405 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RHODO2019_05035 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D RHODO2019_04085 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RHODO2019_03815 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RHODO2019_05300 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RHODO2019_04805 selD; selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D RHODO2019_16455 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RHODO2019_10345 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
D RHODO2019_11765 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D RHODO2019_05645 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D RHODO2019_03645 aminoacyl-tRNA deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D RHODO2019_05280 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D RHODO2019_04170 tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D RHODO2019_08980 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
D RHODO2019_14635 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RHODO2019_04090 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RHODO2019_00760 folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D RHODO2019_14975 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D RHODO2019_02535 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D RHODO2019_02545 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D RHODO2019_02530 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D RHODO2019_05085 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:rant03012]
D RHODO2019_08995 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RHODO2019_04585 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D RHODO2019_02245 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RHODO2019_02240 fusA; elongation factor G K02355 fusA; elongation factor G
D RHODO2019_04790 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D RHODO2019_03805 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D RHODO2019_04595 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D RHODO2019_03810 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D RHODO2019_14575 putative protein N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D RHODO2019_13005 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D RHODO2019_02370 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D RHODO2019_06895 efp; elongation factor P K02356 efp; elongation factor P
D RHODO2019_11920 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D RHODO2019_13015 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D RHODO2019_17715 arfB; alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:rant03110]
D RHODO2019_00430 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D RHODO2019_13280 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D RHODO2019_14885 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D RHODO2019_11465 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D RHODO2019_00405 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RHODO2019_02555 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RHODO2019_14495 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RHODO2019_11210 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RHODO2019_00415 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RHODO2019_00410 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D RHODO2019_04810 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D RHODO2019_02550 groES; co-chaperone GroES K04078 groES; chaperonin GroES
D RHODO2019_12285 trypsin-like peptidase domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107]
D RHODO2019_14965 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RHODO2019_03835 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RHODO2019_02435 mycP; type VII secretion-associated serine protease mycosin K14743 mycP; membrane-anchored mycosin MYCP [EC:3.4.21.-]
D RHODO2019_16380 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D RHODO2019_06695 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D RHODO2019_16500 trxA; thioredoxin K03671 TXN; thioredoxin
D RHODO2019_03995 tetratricopeptide repeat protein K05838 ybbN; putative thioredoxin
C 04131 Membrane trafficking [BR:rant04131]
D RHODO2019_11415 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RHODO2019_15860 TMEM165/GDT1 family protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D RHODO2019_02980 arsA; arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D RHODO2019_10015 ArsA family ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D RHODO2019_05995 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RHODO2019_07060 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RHODO2019_01625 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RHODO2019_09500 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 04121 Ubiquitin system [BR:rant04121]
D RHODO2019_07910 ubiquitin-like protein Pup K13570 pup; prokaryotic ubiquitin-like protein Pup
C 03051 Proteasome [BR:rant03051]
D RHODO2019_07920 prcA; proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D RHODO2019_07915 prcB; proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D RHODO2019_07880 arc; proteasome ATPase K13527 mpa; proteasome-associated ATPase
D RHODO2019_07925 pafA; Pup--protein ligase K13571 pafA; proteasome accessory factor A [EC:6.3.1.19]
D RHODO2019_07930 WYL domain-containing protein K13572 pafB; proteasome accessory factor B
D RHODO2019_07935 YafY family transcriptional regulator K13573 pafC; proteasome accessory factor C
D RHODO2019_07900 dop; depupylase/deamidase Dop K20814 dop; Pup amidohydrolase [EC:3.5.1.119]
C 03032 DNA replication proteins [BR:rant03032]
D RHODO2019_03395 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RHODO2019_18575 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RHODO2019_18605 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D RHODO2019_04255 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RHODO2019_06450 hypothetical protein K03530 hupB; DNA-binding protein HU-beta
D RHODO2019_13590 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RHODO2019_16445 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RHODO2019_16700 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RHODO2019_10725 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RHODO2019_11595 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RHODO2019_16685 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RHODO2019_09700 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RHODO2019_10785 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RHODO2019_16440 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RHODO2019_11295 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RHODO2019_15110 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RHODO2019_10070 DEDD exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RHODO2019_15445 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RHODO2019_10370 bifunctional RNase H/acid phosphatase K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73]
D RHODO2019_04535 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RHODO2019_09450 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RHODO2019_04110 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RHODO2019_16415 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RHODO2019_16420 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RHODO2019_15120 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:rant03036]
D RHODO2019_18575 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RHODO2019_04395 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RHODO2019_05995 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RHODO2019_06375 Lsr2 family protein K26249 lsr2; nucleoid-associated protein Lsr2
D RHODO2019_14890 Lsr2 family protein K26249 lsr2; nucleoid-associated protein Lsr2
D RHODO2019_18610 Lsr2 family protein K26249 lsr2; nucleoid-associated protein Lsr2
D RHODO2019_18605 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D RHODO2019_04255 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RHODO2019_06450 hypothetical protein K03530 hupB; DNA-binding protein HU-beta
D RHODO2019_13590 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RHODO2019_16445 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RHODO2019_12250 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D RHODO2019_01810 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RHODO2019_04465 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D RHODO2019_08800 segregation/condensation protein A K05896 scpA; segregation and condensation protein A
D RHODO2019_08795 scpB; SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B
D RHODO2019_11915 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D RHODO2019_09840 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RHODO2019_05165 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D RHODO2019_09800 FtsQ-type POTRA domain-containing protein K03589 ftsQ; cell division protein FtsQ
D RHODO2019_09815 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D RHODO2019_11910 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D RHODO2019_09795 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RHODO2019_05720 zapE; cell division protein ZapE K06916 zapE; cell division protein ZapE
D RHODO2019_15425 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RHODO2019_16495 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RHODO2019_09780 cell division protein SepF K09772 sepF; cell division inhibitor SepF
D RHODO2019_08805 ParA family protein K03496 parA; chromosome partitioning protein
D RHODO2019_12180 ParA family protein K03496 parA; chromosome partitioning protein
D RHODO2019_16480 ParA family protein K03496 parA; chromosome partitioning protein
D RHODO2019_16485 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RHODO2019_16475 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RHODO2019_04565 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D RHODO2019_05535 tyrosine-type recombinase/integrase K04763 xerD; integrase/recombinase XerD
D RHODO2019_08810 site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D RHODO2019_12275 Mrp/NBP35 family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RHODO2019_18305 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D RHODO2019_07055 whiA; DNA-binding protein WhiA K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:rant03400]
D RHODO2019_12665 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RHODO2019_18410 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RHODO2019_03615 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RHODO2019_13900 DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RHODO2019_04315 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RHODO2019_08910 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D RHODO2019_14250 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D RHODO2019_12440 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RHODO2019_14710 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RHODO2019_05575 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RHODO2019_11850 cryptochrome/photolyase family protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D RHODO2019_12910 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D RHODO2019_11250 DNA-3-methyladenine glycosylase 2 family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RHODO2019_12660 helix-turn-helix domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RHODO2019_12335 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D RHODO2019_04400 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RHODO2019_15975 Fpg/Nei family DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RHODO2019_17460 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RHODO2019_05200 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D RHODO2019_11500 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D RHODO2019_02760 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RHODO2019_17145 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RHODO2019_16665 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RHODO2019_04110 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RHODO2019_09450 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RHODO2019_05425 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D RHODO2019_09005 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D RHODO2019_09410 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D RHODO2019_07040 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D RHODO2019_02635 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RHODO2019_12060 ATP-dependent DNA helicase UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RHODO2019_12105 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RHODO2019_02220 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RHODO2019_02225 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RHODO2019_02395 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RHODO2019_06955 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RHODO2019_12970 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RHODO2019_12710 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RHODO2019_12715 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RHODO2019_09700 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RHODO2019_10785 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RHODO2019_16440 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RHODO2019_11295 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RHODO2019_15110 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RHODO2019_10070 DEDD exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RHODO2019_15445 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RHODO2019_11595 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RHODO2019_16685 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RHODO2019_18580 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
D RHODO2019_07375 UvrD-helicase domain-containing protein K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D RHODO2019_07370 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D RHODO2019_07380 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D RHODO2019_05250 recA; recombinase RecA K03553 recA; recombination protein RecA
D RHODO2019_06655 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D RHODO2019_06660 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RHODO2019_06650 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RHODO2019_06975 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RHODO2019_12680 SMC family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50
D RHODO2019_12685 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D RHODO2019_14835 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D RHODO2019_16430 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D RHODO2019_04330 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RHODO2019_11160 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RHODO2019_15415 recR; recombination mediator RecR K06187 recR; recombination protein RecR
D RHODO2019_08835 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D RHODO2019_11650 DUF853 domain-containing protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D RHODO2019_08455 Ku protein K10979 ku; DNA end-binding protein Ku
D RHODO2019_08175 ligD; non-homologous end-joining DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D RHODO2019_08180 ligD; non-homologous end-joining DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D RHODO2019_16415 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RHODO2019_16420 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RHODO2019_15120 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RHODO2019_18605 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D RHODO2019_04255 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RHODO2019_06450 hypothetical protein K03530 hupB; DNA-binding protein HU-beta
D RHODO2019_13590 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RHODO2019_11350 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RHODO2019_07650 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D RHODO2019_09880 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D RHODO2019_05345 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D RHODO2019_02695 DNA polymerase Y family protein K14161 imuB; protein ImuB
D RHODO2019_02705 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D RHODO2019_05255 recombination regulator RecX K03565 recX; regulatory protein
D RHODO2019_11815 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D RHODO2019_05215 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D RHODO2019_04260 NUDIX hydrolase K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D RHODO2019_08815 NUDIX hydrolase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D RHODO2019_05360 vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RHODO2019_05025 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:rant03029]
D RHODO2019_08995 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RHODO2019_04585 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D RHODO2019_02245 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RHODO2019_02240 fusA; elongation factor G K02355 fusA; elongation factor G
D RHODO2019_11175 era; GTPase Era K03595 era; GTPase
D RHODO2019_08880 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RHODO2019_16605 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RHODO2019_06795 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RHODO2019_11130 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RHODO2019_03770 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RHODO2019_04130 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RHODO2019_15560 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RHODO2019_04165 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RHODO2019_04125 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RHODO2019_11595 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RHODO2019_16685 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RHODO2019_00405 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RHODO2019_00410 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D RHODO2019_02555 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RHODO2019_14495 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RHODO2019_02550 groES; co-chaperone GroES K04078 groES; chaperonin GroES
D RHODO2019_11210 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RHODO2019_00415 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RHODO2019_04085 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RHODO2019_12275 Mrp/NBP35 family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RHODO2019_07110 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RHODO2019_07130 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RHODO2019_16465 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:rant02000]
D RHODO2019_00100 ABC transporter ATP-binding protein/permease K24846 pglK; ATP-binding cassette, subfamily B, bacterial PglK [EC:7.5.2.-]
D RHODO2019_03740 ABC transporter ATP-binding protein/permease K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RHODO2019_12730 ABC transporter ATP-binding protein/permease K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RHODO2019_13960 ABC transporter ATP-binding protein/permease K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RHODO2019_13965 ABC transporter ATP-binding protein/permease K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RHODO2019_08225 cydD; thiol reductant ABC exporter subunit CydD K16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD
D RHODO2019_13020 ABC-F family ATP-binding cassette domain-containing protein K15738 uup; ABC transport system ATP-binding/permease protein
D RHODO2019_14185 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D RHODO2019_14180 ABC transporter permease K02018 modB; molybdate transport system permease protein
D RHODO2019_14175 ATP-binding cassette domain-containing protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D RHODO2019_10545 aliphatic sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RHODO2019_10540 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D RHODO2019_10550 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D RHODO2019_01100 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D RHODO2019_01105 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D RHODO2019_01110 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D RHODO2019_12455 thiamine ABC transporter substrate-binding protein K02064 thiB; thiamine transport system substrate-binding protein
D RHODO2019_12450 iron ABC transporter permease K02063 thiP; thiamine transport system permease protein
D RHODO2019_12445 ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D RHODO2019_05940 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D RHODO2019_07445 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D RHODO2019_05060 ABC transporter permease subunit K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D RHODO2019_07435 ABC transporter permease subunit K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D RHODO2019_05055 ABC transporter permease subunit K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D RHODO2019_07440 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D RHODO2019_07430 ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D RHODO2019_03725 ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D RHODO2019_14295 glycine betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D RHODO2019_03715 ABC transporter permease subunit K05846 opuBD; osmoprotectant transport system permease protein
D RHODO2019_03720 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D RHODO2019_14300 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D RHODO2019_14310 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D RHODO2019_03710 ATP-binding cassette domain-containing protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D RHODO2019_14305 ATP-binding cassette domain-containing protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D RHODO2019_18200 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D RHODO2019_18185 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D RHODO2019_08955 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RHODO2019_09335 ABC transporter substrate-binding protein K10232 aglE; alpha-glucoside transport system substrate-binding protein
D RHODO2019_09340 sugar ABC transporter permease K10233 aglF; alpha-glucoside transport system permease protein
D RHODO2019_09345 carbohydrate ABC transporter permease K10234 aglG; alpha-glucoside transport system permease protein
D RHODO2019_02920 substrate-binding domain-containing protein K10543 xylF; D-xylose transport system substrate-binding protein
D RHODO2019_02930 ABC transporter permease K10544 xylH; D-xylose transport system permease protein
D RHODO2019_02925 ATP-binding cassette domain-containing protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D RHODO2019_18465 sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D RHODO2019_18455 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RHODO2019_18460 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RHODO2019_02800 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D RHODO2019_02810 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D RHODO2019_02805 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D RHODO2019_02955 ABC transporter permease K02069 STAR2; UDP-glucose/iron transport system permease protein
D RHODO2019_02180 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RHODO2019_02185 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RHODO2019_02190 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RHODO2019_02195 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RHODO2019_02200 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RHODO2019_02205 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RHODO2019_02170 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RHODO2019_02175 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RHODO2019_02165 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RHODO2019_02210 hypothetical protein K18481 mas; Mce-associated membrane protein
D RHODO2019_02215 hypothetical protein K18481 mas; Mce-associated membrane protein
D RHODO2019_14775 ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D RHODO2019_14770 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein
D RHODO2019_14765 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein
D RHODO2019_00805 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D RHODO2019_00810 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D RHODO2019_00815 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D RHODO2019_00820 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D RHODO2019_13445 putative selenate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D RHODO2019_13435 hypothetical protein K02042 phnE; phosphonate transport system permease protein
D RHODO2019_13440 ATP-binding cassette domain-containing protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D RHODO2019_05270 glutamate ABC transporter substrate-binding protein K10005 gluB; glutamate transport system substrate-binding protein
D RHODO2019_05265 amino acid ABC transporter permease K10006 gluC; glutamate transport system permease protein
D RHODO2019_05260 amino acid ABC transporter permease K10007 gluD; glutamate transport system permease protein
D RHODO2019_05275 amino acid ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D RHODO2019_09065 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RHODO2019_09475 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RHODO2019_09060 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RHODO2019_09455 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RHODO2019_14435 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RHODO2019_09055 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RHODO2019_09460 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RHODO2019_14430 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RHODO2019_09050 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_09465 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_14440 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_09045 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_09470 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_14445 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RHODO2019_18350 substrate-binding domain-containing protein K11959 urtA; urea transport system substrate-binding protein
D RHODO2019_04750 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D RHODO2019_04755 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D RHODO2019_04760 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D RHODO2019_04765 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D RHODO2019_04770 dipeptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D RHODO2019_11950 ABC transporter family substrate-binding protein K13889 gsiB; glutathione transport system substrate-binding protein
D RHODO2019_11935 ABC transporter permease K13890 gsiC; glutathione transport system permease protein
D RHODO2019_11940 ABC transporter permease K13891 gsiD; glutathione transport system permease protein
D RHODO2019_11945 ABC transporter ATP-binding protein K13892 gsiA; glutathione transport system ATP-binding protein
D RHODO2019_05845 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RHODO2019_06680 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RHODO2019_15405 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RHODO2019_05850 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RHODO2019_15400 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RHODO2019_05855 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RHODO2019_15395 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RHODO2019_05860 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RHODO2019_15390 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RHODO2019_05865 ATP-binding cassette domain-containing protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D RHODO2019_15385 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D RHODO2019_05070 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D RHODO2019_04030 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D RHODO2019_00970 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D RHODO2019_00975 DUF2232 domain-containing protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D RHODO2019_16720 zinc ABC transporter substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D RHODO2019_16730 metal ABC transporter permease K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D RHODO2019_16735 metal ABC transporter permease K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D RHODO2019_16725 ABC transporter ATP-binding protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D RHODO2019_15650 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D RHODO2019_15655 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D RHODO2019_11910 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D RHODO2019_11915 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D RHODO2019_05485 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RHODO2019_06300 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RHODO2019_07135 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RHODO2019_07995 ABC transporter permease subunit K01992 ABC-2.P; ABC-2 type transport system permease protein
D RHODO2019_09405 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RHODO2019_11120 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RHODO2019_11640 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RHODO2019_12480 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RHODO2019_13410 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RHODO2019_13895 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RHODO2019_16160 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RHODO2019_03370 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RHODO2019_03750 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RHODO2019_05490 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RHODO2019_06305 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RHODO2019_07140 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RHODO2019_07990 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RHODO2019_09400 alpha/beta fold hydrolase K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RHODO2019_11125 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RHODO2019_11635 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RHODO2019_12485 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RHODO2019_13405 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RHODO2019_13890 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RHODO2019_16165 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RHODO2019_07165 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D RHODO2019_05030 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D RHODO2019_17635 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D RHODO2019_03075 MFS transporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D RHODO2019_18430 MFS transporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D RHODO2019_03345 MFS transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D RHODO2019_12390 MFS transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D RHODO2019_08515 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D RHODO2019_13375 Bcr/CflA family efflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RHODO2019_02755 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D RHODO2019_06275 MFS transporter K27247 K27247; MFS transporter, DHA2 family, triacylglyceride efflux pump
D RHODO2019_00965 MFS transporter K08221 yitG; MFS transporter, ACDE family, multidrug resistance protein
D RHODO2019_12320 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D RHODO2019_03210 ptsP; phosphoenolpyruvate--protein phosphotransferase K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202]
D RHODO2019_12095 potassium channel family protein K10716 kch; voltage-gated potassium channel
D RHODO2019_12540 potassium channel family protein K10716 kch; voltage-gated potassium channel
D RHODO2019_04480 ammonium transporter K03320 amt; ammonium transporter, Amt family
D RHODO2019_07275 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D RHODO2019_13165 mscL; large conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel
D RHODO2019_11550 mechanosensitive ion channel family protein K22044 ybiO; moderate conductance mechanosensitive channel
D RHODO2019_16135 mechanosensitive ion channel family protein K22044 ybiO; moderate conductance mechanosensitive channel
D RHODO2019_12225 corA; magnesium/cobalt transporter CorA K03284 corA; magnesium transporter
D RHODO2019_01045 magnesium transporter CorA family protein K03284 corA; magnesium transporter
D RHODO2019_11870 crcB; fluoride efflux transporter CrcB K06199 crcB; fluoride exporter
D RHODO2019_11875 CrcB family protein K06199 crcB; fluoride exporter
D RHODO2019_08340 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RHODO2019_08345 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RHODO2019_11180 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RHODO2019_00520 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D RHODO2019_09245 EamA family transporter K11939 rhtA; inner membrane transporter RhtA
D RHODO2019_02000 rarD; EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D RHODO2019_05310 L-lactate permease K03303 lutP; lactate permease
D RHODO2019_16920 sodium:calcium antiporter K07301 yrbG; cation:H+ antiporter
D RHODO2019_15915 cation acetate symporter K14393 actP; cation/acetate symporter
D RHODO2019_00645 cation:dicarboxylase symporter family transporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D RHODO2019_12545 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D RHODO2019_17025 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D RHODO2019_00545 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D RHODO2019_07645 cation:proton antiporter K11105 cvrA; potassium/hydrogen antiporter
D RHODO2019_09725 potassium/proton antiporter K11105 cvrA; potassium/hydrogen antiporter
D RHODO2019_05600 TrkA family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein
D RHODO2019_05605 TrkA family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein
D RHODO2019_13765 purine permease K24206 uacT; uric acid transporter
D RHODO2019_14010 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D RHODO2019_05455 chloride channel protein K03281 clcA; chloride channel protein, CIC family
D RHODO2019_08070 chloride channel protein K03281 clcA; chloride channel protein, CIC family
D RHODO2019_00470 chloride channel protein K03281 clcA; chloride channel protein, CIC family
D RHODO2019_16710 HoxN/HupN/NixA family nickel/cobalt transporter K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D RHODO2019_01345 HoxN/HupN/NixA family nickel/cobalt transporter K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D RHODO2019_08475 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family
D RHODO2019_08665 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family
D RHODO2019_02980 arsA; arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D RHODO2019_10015 ArsA family ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D RHODO2019_10360 SLC13 family permease K03893 arsB; arsenical pump membrane protein
D RHODO2019_02965 arsB; ACR3 family arsenite efflux transporter K03325 ACR3; arsenite transporter
D RHODO2019_16985 arsenic resistance protein K03325 ACR3; arsenite transporter
D RHODO2019_14525 Na+/H+ antiporter subunit A K05565 mnhA; multicomponent Na+:H+ antiporter subunit A
D RHODO2019_14530 Na(+)/H(+) antiporter subunit C K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D RHODO2019_14535 Na+/H+ antiporter subunit D K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D RHODO2019_14540 Na+/H+ antiporter subunit E K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D RHODO2019_14545 monovalent cation/H+ antiporter complex subunit F K05570 mnhF; multicomponent Na+:H+ antiporter subunit F
D RHODO2019_14550 mnhG; monovalent cation/H(+) antiporter subunit G K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D RHODO2019_16520 murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D RHODO2019_17125 LysE family transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO
D RHODO2019_17275 AzlC family ABC transporter permease K26605 azlC; branched chain amino acid efflux pump
D RHODO2019_17280 AzlD domain-containing protein K26606 azlD; branched chain amino acid efflux pump
D RHODO2019_17230 AI-2E family transporter K20469 K20469; putative heme transporter
D RHODO2019_08700 VIT family protein K22736 VIT; vacuolar iron transporter family protein
D RHODO2019_12200 MarC family protein K05595 marC; multiple antibiotic resistance protein
D RHODO2019_09815 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D RHODO2019_15860 TMEM165/GDT1 family protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D RHODO2019_09740 hypothetical protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D RHODO2019_01215 hypothetical protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D RHODO2019_01180 cytochrome c biogenesis CcdA family protein K06196 ccdA; cytochrome c-type biogenesis protein
D RHODO2019_01780 cytochrome c biogenesis CcdA family protein K06196 ccdA; cytochrome c-type biogenesis protein
D RHODO2019_08510 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D RHODO2019_08505 narH; nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D RHODO2019_08495 narI; respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D RHODO2019_17120 polysaccharide biosynthesis tyrosine autokinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D RHODO2019_16855 YbhN family protein K20468 K20468; putative heme transporter
D RHODO2019_13105 tryptophan-rich sensory protein K05770 TSPO; translocator protein
D RHODO2019_13755 uraH; hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D RHODO2019_16225 copper resistance protein CopC K07156 copC; copper resistance protein C
C 02044 Secretion system [BR:rant02044]
D RHODO2019_13995 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RHODO2019_15185 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RHODO2019_15180 type II secretion system F family protein K12510 tadB; tight adherence protein B
D RHODO2019_04885 YggT family protein K02221 yggT; YggT family protein
D RHODO2019_09775 YggT family protein K02221 yggT; YggT family protein
D RHODO2019_11305 helix-hairpin-helix domain-containing protein K02237 comEA; competence protein ComEA
D RHODO2019_11300 ComEC/Rec2 family competence protein K02238 comEC; competence protein ComEC
D RHODO2019_02420 eccB; type VII secretion protein EccB K27085 eccB; ESX secretion system ATPase EccB
D RHODO2019_02445 eccCa; type VII secretion protein EccCa K27086 eccC; ESX secretion system protein EccC
D RHODO2019_02440 eccD; type VII secretion integral membrane protein EccD K27087 eccD; ESX secretion system protein EccD
D RHODO2019_02415 eccE; type VII secretion protein EccE K27088 eccE; ESX secretion system protein EccE
D RHODO2019_02410 hypothetical protein K27088 eccE; ESX secretion system protein EccE
D RHODO2019_02435 mycP; type VII secretion-associated serine protease mycosin K14743 mycP; membrane-anchored mycosin MYCP [EC:3.4.21.-]
D RHODO2019_09975 ESX secretion-associated protein EspG K27091 espG; ESX secretion-associated protein EspG
D RHODO2019_00195 ESX secretion-associated protein EspG K27091 espG; ESX secretion-associated protein EspG
D RHODO2019_15945 ESX secretion-associated protein EspG K27091 espG; ESX secretion-associated protein EspG
D RHODO2019_02460 WXG100 family type VII secretion target K14956 esx; ESAT-6 family protein
D RHODO2019_02465 WXG100 family type VII secretion target K14956 esx; ESAT-6 family protein
D RHODO2019_03590 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RHODO2019_13595 secA2; accessory Sec system translocase SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RHODO2019_06670 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RHODO2019_02130 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RHODO2019_06675 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RHODO2019_07075 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RHODO2019_02355 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RHODO2019_04495 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RHODO2019_04475 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RHODO2019_06665 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D RHODO2019_16465 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RHODO2019_07940 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D RHODO2019_13655 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D RHODO2019_12280 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D RHODO2019_07945 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:rant02042]
D RHODO2019_08340 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RHODO2019_08345 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RHODO2019_11180 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RHODO2019_12780 hemolysin III family protein K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:rant02022]
D RHODO2019_01630 ATP-binding protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D RHODO2019_01635 response regulator transcription factor K07776 regX3; two-component system, OmpR family, response regulator RegX3
D RHODO2019_04435 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D RHODO2019_04440 response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D RHODO2019_13185 ATP-binding protein K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]
D RHODO2019_13190 response regulator transcription factor K07669 mprA; two-component system, OmpR family, response regulator MprA
D RHODO2019_03570 mtrB; MtrAB system histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D RHODO2019_03565 mtrA; MtrAB system response regulator MtrA K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D RHODO2019_00835 HAMP domain-containing histidine kinase K07655 prrB; two-component system, OmpR family, sensor histidine kinase PrrB [EC:2.7.13.3]
D RHODO2019_00830 response regulator transcription factor K07671 prrA; two-component system, OmpR family, response regulator PrrA
D RHODO2019_12830 HAMP domain-containing histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RHODO2019_12825 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D RHODO2019_11115 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D RHODO2019_11110 response regulator transcription factor K07693 desR; two-component system, NarL family, response regulator DesR
D RHODO2019_08615 GAF domain-containing protein K07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3]
D RHODO2019_08610 response regulator transcription factor K07695 devR; two-component system, NarL family, response regulator DevR
D RHODO2019_15965 histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D RHODO2019_03665 histidine kinase N-terminal domain-containing protein K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
D RHODO2019_09480 response regulator K22010 pdtaR; two-component system, response regulator PdtaR
C 02035 Bacterial motility proteins [BR:rant02035]
D RHODO2019_04570 FliA/WhiG family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
D RHODO2019_13995 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RHODO2019_15185 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:rant04812]
D RHODO2019_09795 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RHODO2019_08805 ParA family protein K03496 parA; chromosome partitioning protein
D RHODO2019_12180 ParA family protein K03496 parA; chromosome partitioning protein
D RHODO2019_16480 ParA family protein K03496 parA; chromosome partitioning protein
D RHODO2019_16485 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:rant04147]
D RHODO2019_05995 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RHODO2019_12935 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RHODO2019_07060 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RHODO2019_07065 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RHODO2019_09500 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RHODO2019_16380 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D RHODO2019_02555 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RHODO2019_14495 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RHODO2019_00405 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RHODO2019_01055 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RHODO2019_02595 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RHODO2019_02600 GuaB3 family IMP dehydrogenase-related protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RHODO2019_02245 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RHODO2019_11195 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RHODO2019_06225 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_10035 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_11885 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_14590 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_15825 acyl--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_16840 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RHODO2019_03970 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_05765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_11600 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_12890 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_17765 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RHODO2019_03555 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RHODO2019_02360 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RHODO2019_06685 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RHODO2019_08915 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RHODO2019_08920 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RHODO2019_04280 cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D RHODO2019_14795 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D RHODO2019_04000 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D RHODO2019_03225 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RHODO2019_10245 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RHODO2019_10275 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RHODO2019_01745 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RHODO2019_12460 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D RHODO2019_04205 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RHODO2019_02685 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RHODO2019_10195 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RHODO2019_04075 electron transfer flavoprotein subunit alpha/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit
D RHODO2019_07095 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RHODO2019_16295 glucose-6-phosphate dehydrogenase (NADP(+)) K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RHODO2019_07070 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RHODO2019_01625 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:rant02048]
D RHODO2019_15495 DEAD/DEAH box helicase family protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D RHODO2019_15500 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D RHODO2019_15505 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D RHODO2019_18575 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RHODO2019_10525 ribbon-helix-helix domain-containing protein K26989 mazE9; antitoxin MazE9
D RHODO2019_10595 type II toxin-antitoxin system RelE/ParE family toxin K06218 relE; mRNA interferase RelE/StbE
D RHODO2019_18240 type II toxin-antitoxin system RelE/ParE family toxin K06218 relE; mRNA interferase RelE/StbE
D RHODO2019_06490 Fic family protein K07341 doc; death on curing protein
D RHODO2019_09795 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RHODO2019_04220 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RHODO2019_04085 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RHODO2019_18535 DNA sulfur modification protein DndB K19169 dndB; DNA sulfur modification protein DndB
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:rant01504]
D RHODO2019_08245 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1
D RHODO2019_08240 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:rant00536]
D RHODO2019_01530 heparin-binding hemagglutinin K16645 hbhA; heparin binding hemagglutinin HbhA
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:rant03100]
D RHODO2019_03900 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RHODO2019_03905 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RHODO2019_03910 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RHODO2019_10345 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D RHODO2019_14480 NAD-dependent epimerase/dehydratase family protein K00091 E1.1.1.219; dihydroflavonol-4-reductase [EC:1.1.1.219]
D RHODO2019_09360 S-(hydroxymethyl)mycothiol dehydrogenase K00153 E1.1.1.306; S-(hydroxymethyl)mycothiol dehydrogenase [EC:1.1.1.306]
D RHODO2019_13700 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D RHODO2019_18495 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409]
D RHODO2019_18440 NAD(P)-dependent oxidoreductase K08319 ltnD; L-threonate 2-dehydrogenase [EC:1.1.1.411]
D RHODO2019_13220 NAD-dependent epimerase/dehydratase family protein K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412]
D RHODO2019_17395 mgrA; L-glyceraldehyde 3-phosphate reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D RHODO2019_12975 PQQ-dependent sugar dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D RHODO2019_10330 fgd; glucose-6-phosphate dehydrogenase (coenzyme-F420) K15510 fgd1; coenzyme F420-dependent glucose-6-phosphate dehydrogenase [EC:1.1.98.2]
D RHODO2019_14715 nitroreductase family deazaflavin-dependent oxidoreductase K00540 fqr; F420H(2)-dependent quinone reductase [EC:1.1.98.-]
D RHODO2019_07335 NDMA-dependent alcohol dehydrogenase K00119 E1.1.99.36; alcohol dehydrogenase (nicotinoprotein) [EC:1.1.99.36]
D RHODO2019_07360 aldo/keto reductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D RHODO2019_13500 (2Fe-2S)-binding protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D RHODO2019_14270 (2Fe-2S)-binding protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D RHODO2019_13505 xanthine dehydrogenase family protein subunit M K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3]
D RHODO2019_14260 xanthine dehydrogenase family protein subunit M K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3]
D RHODO2019_13495 xanthine dehydrogenase family protein molybdopterin-binding subunit K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3]
D RHODO2019_14265 xanthine dehydrogenase family protein molybdopterin-binding subunit K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3]
D RHODO2019_14325 mftC; mycofactocin radical SAM maturase K24696 mftC; [mycofactocin precursor peptide]-tyrosine decarboxylase / 3-amino-5-[(4-hydroxyphenyl)methyl]-4,4-dimethylpyrrolidin-2-one synthase [EC:1.3.98.7 4.1.99.26]
D RHODO2019_16825 (2Fe-2S)-binding protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D RHODO2019_16820 molybdopterin-dependent oxidoreductase K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D RHODO2019_01920 geranylgeranyl reductase family protein K21401 menJ; menaquinone-9 beta-reductase [EC:1.3.99.38]
D RHODO2019_14315 mftD; mycofactocin biosynthesis FMN-dependent deaminase MftD K24693 mftD; pre-mycofactocin synthase [EC:1.4.3.26]
D RHODO2019_14320 mftD; mycofactocin biosynthesis FMN-dependent deaminase MftD K24693 mftD; pre-mycofactocin synthase [EC:1.4.3.26]
D RHODO2019_05375 NADPH-dependent F420 reductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D RHODO2019_08350 FAD-dependent oxidoreductase K18208 RNLS; renalase [EC:1.6.3.5]
D RHODO2019_03205 NAD(P)H-quinone dehydrogenase K23842 lpdA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D RHODO2019_07115 quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D RHODO2019_13685 NADPH:quinone reductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D RHODO2019_00285 NADPH:quinone oxidoreductase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D RHODO2019_04680 mycothione reductase K17883 mtr; mycothione reductase [EC:1.8.1.15]
D RHODO2019_15985 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D RHODO2019_05675 msrB; peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D RHODO2019_01570 glutathione S-transferase C-terminal domain-containing protein K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D RHODO2019_01595 alpha/beta hydrolase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10]
D RHODO2019_09555 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D RHODO2019_11740 bcp; thioredoxin-dependent thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D RHODO2019_15340 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D RHODO2019_00865 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D RHODO2019_10635 peroxiredoxin K24120 ahpE; mycoredoxin-dependent peroxiredoxin [EC:1.11.1.29]
D RHODO2019_08195 beta-carotene 15,15'-dioxygenase, Brp/Blh family K21817 blh; beta-carotene 15,15'-dioxygenase [EC:1.13.11.63]
D RHODO2019_17135 globin domain-containing protein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D RHODO2019_18340 LLM class flavin-dependent oxidoreductase K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28]
D RHODO2019_14865 antibiotic biosynthesis monooxygenase K21481 mhuD; heme oxygenase (mycobilin-producing) [EC:1.14.99.57]
D RHODO2019_03695 sodN; superoxide dismutase, Ni K00518 sodN; nickel superoxide dismutase [EC:1.15.1.1]
D RHODO2019_17670 FAD-dependent oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D RHODO2019_12735 NAD(P)/FAD-dependent oxidoreductase K21567 fnr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D RHODO2019_12070 mycoredoxin K18917 mrx1; mycoredoxin [EC:1.20.4.3]
D RHODO2019_09550 cyclopropane-fatty-acyl-phospholipid synthase family protein K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D RHODO2019_15435 class I SAM-dependent methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D RHODO2019_16010 cyclopropane-fatty-acyl-phospholipid synthase family protein K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D RHODO2019_06505 methyltransferase K24666 dsyB; 2-hydroxy-4-(methylsulfanyl)butanoate S-methyltransferase [EC:2.1.1.373]
D RHODO2019_00795 mshD; mycothiol synthase K15520 mshD; mycothiol synthase [EC:2.3.1.189]
D RHODO2019_08010 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D RHODO2019_01170 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D RHODO2019_11315 SGNH/GDSL hydrolase family protein K22797 octT; diglucosylglycerate octanoyltransferase [EC:2.3.1.273]
D RHODO2019_14035 glutaminyl-peptide cyclotransferase K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5]
D RHODO2019_13230 3-oxoacyl-ACP synthase III K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20]
D RHODO2019_01600 mshA; D-inositol-3-phosphate glycosyltransferase K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250]
D RHODO2019_01165 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D RHODO2019_09515 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D RHODO2019_14580 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D RHODO2019_18500 hypothetical protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220]
D RHODO2019_04325 DAK2 domain-containing protein K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D RHODO2019_07520 ppsR; pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D RHODO2019_10260 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D RHODO2019_14840 disA; DNA integrity scanning diadenylate cyclase DisA K07067 disA; diadenylate cyclase [EC:2.7.7.85]
D RHODO2019_07485 YdiU family protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D RHODO2019_02985 hypothetical protein K18701 arsC; arsenate-mycothiol transferase [EC:2.8.4.2]
D RHODO2019_09995 alpha/beta fold hydrolase K03928 yvaK; carboxylesterase [EC:3.1.1.1]
D RHODO2019_14100 alpha/beta fold hydrolase K03928 yvaK; carboxylesterase [EC:3.1.1.1]
D RHODO2019_14565 alpha/beta fold hydrolase K22250 phaZ; poly(3-hydroxyoctanoate) depolymerase [EC:3.1.1.76]
D RHODO2019_12510 carboxylesterase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D RHODO2019_12115 alpha/beta fold hydrolase K19311 lipV; lipase [EC:3.1.1.-]
D RHODO2019_11570 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RHODO2019_11580 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RHODO2019_13830 tyrosine-protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D RHODO2019_11320 histidine phosphatase family protein K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85]
D RHODO2019_12205 PHP domain-containing protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D RHODO2019_13040 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D RHODO2019_03925 nucS; endonuclease NucS K07503 nucS; endonuclease [EC:3.1.-.-]
D RHODO2019_14285 mftE; mycofactocin biosynthesis peptidyl-dipeptidase MftE K24697 mftE; mycofactocin precursor peptide peptidase [EC:3.4.14.14]
D RHODO2019_06985 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RHODO2019_14605 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RHODO2019_05830 proline iminopeptidase-family hydrolase K18457 laaA; L-proline amide hydrolase [EC:3.5.1.101]
D RHODO2019_12420 mshB; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase K15525 mshB; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase [EC:3.5.1.103]
D RHODO2019_12845 mca; mycothiol conjugate amidase Mca K18455 mca; mycothiol S-conjugate amidase [EC:3.5.1.115]
D RHODO2019_00910 amidohydrolase family protein K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32]
D RHODO2019_07265 AAA family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RHODO2019_09860 AAA family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RHODO2019_18485 mandelate racemase/muconate lactonizing enzyme family protein K22209 tarD; D(-)-tartrate dehydratase [EC:4.2.1.81]
D RHODO2019_02515 NAD(P)H-hydrate dehydratase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D RHODO2019_15770 sedoheptulose 7-phosphate cyclase K21342 nos2; demethyl-4-deoxygadusol synthase [EC:4.2.3.154]
D RHODO2019_17665 FKBP-type peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D RHODO2019_03990 methylmalonyl-CoA mutase family protein K25820 icmA; isobutyryl-CoA mutase large subunit [EC:5.4.99.13]
D RHODO2019_02650 cobalamin B12-binding domain-containing protein K25821 icmB; isobutyryl-CoA mutase small subunit [EC:5.4.99.13]
D RHODO2019_13225 alpha/beta fold hydrolase K22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1]
D RHODO2019_07815 mshC; cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase K15526 mshC; L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [EC:6.3.1.13]
D RHODO2019_06745 acyl-CoA carboxylase subunit beta K01970 accD2; acyl-CoA carboxylase subunit beta [EC:6.4.1.-]
D RHODO2019_10080 acetyl-CoA carboxylase carboxyltransferase subunit alpha/beta K04104 accD3; acyl-CoA carboxylase subunit beta [EC:6.4.1.-]
D RHODO2019_06750 biotin/lipoyl-binding protein K27596 accA2; acyl-CoA carboxylase subunit alpha [EC:6.4.1.-]
D RHODO2019_06075 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D RHODO2019_06455 HAD-IC family P-type ATPase K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]
D RHODO2019_03175 heavy metal translocating P-type ATPase K21887 ctpJ; cation-transporting P-type ATPase J [EC:7.2.2.-]
C 99981 Carbohydrate metabolism
D RHODO2019_09305 acetoin utilization protein AcuC K04768 acuC; acetoin utilization protein AcuC
D RHODO2019_01015 (Fe-S)-binding protein K18928 lldE; L-lactate dehydrogenase complex protein LldE
D RHODO2019_01010 LutB/LldF family L-lactate oxidation iron-sulfur protein K18929 lldF; L-lactate dehydrogenase complex protein LldF
D RHODO2019_01005 lactate utilization protein C K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D RHODO2019_11460 fdhD; formate dehydrogenase accessory sulfurtransferase FdhD K02379 fdhD; FdhD protein
D RHODO2019_08725 ferredoxin K05337 fer; ferredoxin
D RHODO2019_15025 ferredoxin K05337 fer; ferredoxin
D RHODO2019_07175 SUF system NifU family Fe-S cluster assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D RHODO2019_04070 electron transfer flavoprotein subunit beta/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
D RHODO2019_13325 acyl-CoA dehydrogenase family protein K09456 aidB; putative acyl-CoA dehydrogenase
D RHODO2019_11310 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D RHODO2019_09785 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D RHODO2019_14210 transglycosylase family protein K21687 rpfA; resuscitation-promoting factor RpfA
D RHODO2019_13035 transglycosylase family protein K21688 rpfB; resuscitation-promoting factor RpfB
D RHODO2019_14280 mftF; mycofactocin biosynthesis glycosyltransferase MftF K24698 mftF; mycofactocin glycosyltransferase
C 99987 Cofactor metabolism
D RHODO2019_06010 AarF/UbiB family protein K03688 ubiB; ubiquinone biosynthesis protein
D RHODO2019_14335 mftA; mycofactocin precursor MftA K24694 mftA; mycofactocin precursor peptide MftA
D RHODO2019_14330 mftB; mycofactocin biosynthesis chaperone MftB K24695 mftB; mycofactocin biosynthesis protein MftB
C 99988 Secondary metabolism
C 99999 Others
D RHODO2019_04180 DoxX family protein K15977 K15977; putative oxidoreductase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D RHODO2019_14050 cold-shock protein K03704 cspA; cold shock protein
D RHODO2019_14650 cold shock domain-containing protein K03704 cspA; cold shock protein
D RHODO2019_15135 cold-shock protein K03704 cspA; cold shock protein
C 99974 Translation
C 99975 Protein processing
D RHODO2019_11800 clpS; ATP-dependent Clp protease adapter ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D RHODO2019_11480 tig; trigger factor K03545 tig; trigger factor
D RHODO2019_11905 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein
D RHODO2019_04555 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein
D RHODO2019_01785 cytochrome c biogenesis protein ResB K07399 resB; cytochrome c biogenesis protein
D RHODO2019_11100 XdhC family protein K07402 xdhC; xanthine dehydrogenase accessory factor
D RHODO2019_14390 XdhC family protein K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D RHODO2019_12120 MGMT family protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D RHODO2019_12690 DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D RHODO2019_04550 YraN family protein K07460 yraN; putative endonuclease
D RHODO2019_07860 RecB family exonuclease K07465 K07465; putative RecB family exonuclease
D RHODO2019_10995 PD-(D/E)XK nuclease family protein K07465 K07465; putative RecB family exonuclease
D RHODO2019_04560 dprA; DNA-processing protein DprA K04096 smf; DNA processing protein
D RHODO2019_06830 replication-associated recombination protein A K07478 ycaJ; putative ATPase
D RHODO2019_18520 IS30 family transposase K07482 K07482; transposase, IS30 family
D RHODO2019_03110 IS256 family transposase K07493 K07493; putative transposase
D RHODO2019_03100 IS3 family transposase K07497 K07497; putative transposase
D RHODO2019_10605 IS3 family transposase K07497 K07497; putative transposase
D RHODO2019_18120 Mu transposase C-terminal domain-containing protein K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D RHODO2019_05190 PspA/IM30 family protein K03969 pspA; phage shock protein A
D RHODO2019_15420 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D RHODO2019_03000 APC family permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RHODO2019_05985 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RHODO2019_16175 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RHODO2019_04905 sodium:solute symporter family protein K03307 TC.SSS; solute:Na+ symporter, SSS family
D RHODO2019_17345 sodium:solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
C 99978 Cell growth
D RHODO2019_16470 single-stranded DNA-binding protein K06346 jag; spoIIIJ-associated protein
C 99993 Cell motility
C 99995 Signaling proteins
D RHODO2019_12125 Tellurium resistance K05792 terA; tellurite resistance protein TerA
D RHODO2019_12130 TerD family protein K05795 terD; tellurium resistance protein TerD
D RHODO2019_16205 TerD family protein K05795 terD; tellurium resistance protein TerD
D RHODO2019_12430 typA; translational GTPase TypA K06207 typA; GTP-binding protein
D RHODO2019_11190 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D RHODO2019_12755 PhoH family protein K07175 phoH2; PhoH-like ATPase
D RHODO2019_02080 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
C 99994 Others
D RHODO2019_00840 phoU; phosphate signaling complex protein PhoU K02039 phoU; phosphate transport system protein
D RHODO2019_13085 NAD(P)/FAD-dependent oxidoreductase K07222 K07222; putative flavoprotein involved in K+ transport
D RHODO2019_00825 hemophore-related protein K20467 K20467; heme-binding protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D RHODO2019_04700 GNAT family N-acetyltransferase K02348 elaA; ElaA protein
D RHODO2019_07405 PHP domain-containing protein K04477 ycdX; putative hydrolase
D RHODO2019_15140 DEAD/DEAH box helicase K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D RHODO2019_11555 globin K06886 glbN; hemoglobin
D RHODO2019_16585 group 1 truncated hemoglobin K06886 glbN; hemoglobin
D RHODO2019_07810 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily
D RHODO2019_08305 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily
D RHODO2019_09145 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily
D RHODO2019_18745 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily
D RHODO2019_01340 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily
D RHODO2019_04225 HAD family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D RHODO2019_07155 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D RHODO2019_07160 sufD; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D RHODO2019_06485 phosphotriesterase-related protein K07048 PTER; phosphotriesterase-related protein
D RHODO2019_02770 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein
D RHODO2019_09265 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein
D RHODO2019_08000 FxsA family protein K07113 fxsA; UPF0716 protein FxsA
D RHODO2019_03260 SufE family protein K02426 sufE; cysteine desulfuration protein SufE
D RHODO2019_16390 DUF2020 domain-containing protein K07146 K07146; UPF0176 protein
D RHODO2019_04155 DedA family protein K03975 dedA; membrane-associated protein
D RHODO2019_12790 VTT domain-containing protein K03975 dedA; membrane-associated protein
D RHODO2019_00495 DedA family protein K03975 dedA; membrane-associated protein
D RHODO2019_00500 VTT domain-containing protein K03975 dedA; membrane-associated protein
D RHODO2019_09165 DUF202 domain-containing protein K00389 yidH; putative membrane protein
D RHODO2019_06350 SHOCT domain-containing protein K08982 K08982; putative membrane protein
D RHODO2019_06370 hypothetical protein K08982 K08982; putative membrane protein
D RHODO2019_17010 SHOCT domain-containing protein K08982 K08982; putative membrane protein
D RHODO2019_18750 hypothetical protein K08982 K08982; putative membrane protein
D RHODO2019_18765 SHOCT domain-containing protein K08982 K08982; putative membrane protein
D RHODO2019_18955 hypothetical protein K08982 K08982; putative membrane protein
D RHODO2019_01135 SHOCT domain-containing protein K08982 K08982; putative membrane protein
D RHODO2019_05755 YchJ family metal-binding protein K09858 K09858; SEC-C motif domain protein
C 99997 Function unknown
D RHODO2019_17285 NYN domain-containing protein K06860 K06860; putative heme uptake system protein
D RHODO2019_16555 alpha/beta hydrolase K06889 K06889; uncharacterized protein
D RHODO2019_17580 ATP-binding protein K06921 K06921; uncharacterized protein
D RHODO2019_08250 CoA-binding protein K06929 K06929; uncharacterized protein
D RHODO2019_16000 FAD-dependent oxidoreductase K06954 K06954; uncharacterized protein
D RHODO2019_04510 RNA-binding protein K06960 K06960; uncharacterized protein
D RHODO2019_17660 N-acetyltransferase K06975 K06975; uncharacterized protein
D RHODO2019_04640 DUF4081 domain-containing protein K06976 K06976; uncharacterized protein
D RHODO2019_06835 CocE/NonD family hydrolase K06978 K06978; uncharacterized protein
D RHODO2019_00620 DUF2334 domain-containing protein K06986 K06986; uncharacterized protein
D RHODO2019_02020 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein
D RHODO2019_17430 PPOX class F420-dependent oxidoreductase K07006 K07006; uncharacterized protein
D RHODO2019_03640 alpha/beta hydrolase K07020 K07020; uncharacterized protein
D RHODO2019_08625 AAA family ATPase K07028 K07028; uncharacterized protein
D RHODO2019_17705 VOC family protein K07032 K07032; uncharacterized protein
D RHODO2019_18360 acetate uptake transporter K07034 K07034; uncharacterized protein
D RHODO2019_11900 amidohydrolase K07045 K07045; uncharacterized protein
D RHODO2019_15610 neutral zinc metallopeptidase K07054 K07054; uncharacterized protein
D RHODO2019_05400 PIN domain-containing protein K07064 K07064; uncharacterized protein
D RHODO2019_17480 type II toxin-antitoxin system VapC family toxin K07064 K07064; uncharacterized protein
D RHODO2019_10205 TIGR01777 family oxidoreductase K07071 K07071; uncharacterized protein
D RHODO2019_10355 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D RHODO2019_11285 TSUP family transporter K07090 K07090; uncharacterized protein
D RHODO2019_14095 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D RHODO2019_16760 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D RHODO2019_17000 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D RHODO2019_18850 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D RHODO2019_01500 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D RHODO2019_15320 metallophosphoesterase K07098 K07098; uncharacterized protein
D RHODO2019_00445 SDR family oxidoreductase K07124 K07124; uncharacterized protein
D RHODO2019_17595 DUF4143 domain-containing protein K07133 K07133; uncharacterized protein
D RHODO2019_07470 MOSC domain-containing protein K07140 K07140; MOSC domain-containing protein
D RHODO2019_18380 MOSC domain-containing protein K07140 K07140; MOSC domain-containing protein
D RHODO2019_09645 LON peptidase substrate-binding domain-containing protein K07157 K07157; uncharacterized protein
D RHODO2019_11335 VWA domain-containing protein K07161 K07161; uncharacterized protein
D RHODO2019_14360 VWA domain-containing protein K07161 K07161; uncharacterized protein
D RHODO2019_14395 VWA domain-containing protein K07161 K07161; uncharacterized protein
D RHODO2019_10375 C4-type zinc ribbon domain-containing protein K07164 K07164; uncharacterized protein
D RHODO2019_16460 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein
D RHODO2019_08375 bifunctional nuclease family protein K08999 K08999; uncharacterized protein
D RHODO2019_18880 DsrE family protein K09004 K09004; uncharacterized protein
D RHODO2019_12925 DUF501 domain-containing protein K09009 K09009; uncharacterized protein
D RHODO2019_15315 GatB/YqeY domain-containing protein K09117 K09117; uncharacterized protein
D RHODO2019_12005 UPF0182 family protein K09118 K09118; uncharacterized protein
D RHODO2019_09420 DUF402 domain-containing protein K09146 K09146; uncharacterized protein
D RHODO2019_19180 YfbU family protein K09161 K09161; uncharacterized protein
D RHODO2019_05240 DUF2071 domain-containing protein K09166 K09166; uncharacterized protein
D RHODO2019_17540 DUF2075 domain-containing protein K09384 K09384; uncharacterized protein
D RHODO2019_16005 DUF1365 domain-containing protein K09701 K09701; uncharacterized protein
D RHODO2019_13510 DUF309 domain-containing protein K09763 K09763; uncharacterized protein
D RHODO2019_12550 DUF808 domain-containing protein K09781 K09781; uncharacterized protein
D RHODO2019_03535 Trm112 family protein K09791 K09791; uncharacterized protein
D RHODO2019_16075 DUF475 domain-containing protein K09799 K09799; uncharacterized protein
D RHODO2019_04965 yaaA; peroxide stress protein YaaA K09861 K09861; uncharacterized protein
D RHODO2019_05120 winged helix DNA-binding domain-containing protein K09927 K09927; uncharacterized protein
D RHODO2019_17200 DUF2064 domain-containing protein K09931 K09931; uncharacterized protein
D RHODO2019_15565 putative glycolipid-binding domain-containing protein K09957 K09957; uncharacterized protein
D RHODO2019_15270 nuclear transport factor 2 family protein K09958 K09958; uncharacterized protein
D RHODO2019_16830 DUF2237 domain-containing protein K09966 K09966; uncharacterized protein
D RHODO2019_18405 2OG-Fe(II) oxygenase K09990 K09990; uncharacterized protein
D RHODO2019_05005 YlxR family protein K07742 ylxR; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 13, 2024