+E Transcription factors KO
#
Transcription Factors - Raoultella sp. X13
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D DSD31_09010 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D DSD31_23320 arabinose operon transcriptional regulator AraC K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D DSD31_21555 arabinose operon transcriptional regulator AraC K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D DSD31_22275 hpaA; 4-hydroxyphenylacetate catabolism regulatory protein HpaA K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D DSD31_02605 AraC family transcriptional regulator K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D DSD31_25280 HTH-type transcriptional activator RhaR K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D DSD31_25285 HTH-type transcriptional activator RhaS K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D DSD31_15080 transcriptional regulator ChbR K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D DSD31_08900 yersiniabactin transcriptional regulator YbtA K05372 ybtA; AraC family transcriptional regulator
D DSD31_24035 DNA-binding transcriptional regulator SoxS K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator
D DSD31_12555 marA; MDR efflux pump AcrAB transcriptional activator MarA K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator
D DSD31_21920 MDR efflux pump AcrAB transcriptional activator RobA K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D DSD31_05965 AraC family transcriptional regulator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D DSD31_14590 AraC family transcriptional regulator K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator
D DSD31_18845 ramA; RamA family antibiotic efflux transcriptional regulator K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator
D DSD31_24100 AraC family transcriptional regulator K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator
D DSD31_14205 transcriptional regulator FeaR K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D DSD31_22095 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D DSD31_00435 AraC family transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D DSD31_23820 transcriptional regulator MelR K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D DSD31_15330 AraC family transcriptional regulator K25495 nimR; AraC family transcriptional regulator, regulator of nimT
D DSD31_03590 helix-turn-helix domain-containing protein K13652 K13652; AraC family transcriptional regulator
D DSD31_13820 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D DSD31_07730 bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D DSD31_12255 transcriptional regulator FtrA K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
C LysR family
D DSD31_11290 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DSD31_13885 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DSD31_04970 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DSD31_11990 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DSD31_19095 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DSD31_25000 HTH-type transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D DSD31_24760 HTH-type transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D DSD31_21815 transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D DSD31_25115 DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D DSD31_04210 chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D DSD31_21485 transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D DSD31_09900 transcriptional regulator TdcA K07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator
D DSD31_23035 HTH-type transcriptional activator AllS K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon
D DSD31_07165 transcriptional regulator CynR K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D DSD31_14865 LysR family transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D DSD31_08940 HTH-type transcriptional regulator Cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D DSD31_00120 DNA-binding transcriptional regulator DsdC K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D DSD31_11915 LysR family transcriptional regulator K13928 mdcR; LysR family transcriptional regulator, malonate utilization transcriptional regulator
D DSD31_11795 LysR family transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D DSD31_16215 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D DSD31_11075 LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D DSD31_00320 LysR family transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D DSD31_08935 nitrogen assimilation transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D DSD31_02560 HTH-type transcriptional activator AaeR K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D DSD31_05865 LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D DSD31_25050 HTH-type transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D DSD31_17245 DNA-binding transcriptional repressor DeoR K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D DSD31_00165 DeoR family transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D DSD31_14290 DeoR/GlpR transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D DSD31_01825 DeoR/GlpR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D DSD31_03115 DeoR family transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D DSD31_04985 L-fucose operon activator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D DSD31_05505 DNA-binding transcriptional repressor K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
D DSD31_23450 HTH-type transcriptional regulator UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
C LacI family
D DSD31_19620 LacI family DNA-binding transcriptional regulator K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D DSD31_12155 LacI family DNA-binding transcriptional regulator K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D DSD31_12460 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DSD31_12530 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DSD31_25350 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DSD31_25605 transcriptional regulator RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DSD31_21720 Mal regulon transcriptional regulator MalI K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DSD31_04795 HTH-type transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DSD31_00980 xylose operon transcription regulator XylR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DSD31_14525 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DSD31_19455 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DSD31_07965 HTH-type transcriptional regulator GalS K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DSD31_01095 LacI family DNA-binding transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D DSD31_25210 DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D DSD31_08230 LacI family DNA-binding transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D DSD31_21470 catabolite repressor/activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D DSD31_19075 LacI family DNA-binding transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D DSD31_23130 HTH-type transcriptional regulator TreR K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D DSD31_05465 LacI family DNA-binding transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D DSD31_11390 HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D DSD31_01765 HTH-type transcriptional regulator GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D DSD31_20190 LacI family DNA-binding transcriptional regulator K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D DSD31_21680 LacI family DNA-binding transcriptional regulator K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D DSD31_03320 transcriptional regulator EbgR K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
D DSD31_11655 Mal regulon transcriptional regulator MalI K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
C GntR family
D DSD31_07285 GntR family transcriptional regulator K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator
D DSD31_00085 GntR family transcriptional regulator K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator
D DSD31_17370 GntR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D DSD31_23840 phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D DSD31_17655 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D DSD31_15215 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D DSD31_09675 fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D DSD31_21295 pyruvate dehydrogenase complex transcriptional repressor PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DSD31_03200 transcriptional regulator ExuR K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D DSD31_00810 transcriptional regulator LldR K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator
D DSD31_00035 FadR family transcriptional regulator K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D DSD31_02675 transcriptional regulator NanR K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor
D DSD31_05710 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D DSD31_18765 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D DSD31_01640 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D DSD31_19600 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D DSD31_12105 GntR family transcriptional regulator K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
C TetR/AcrR family
D DSD31_18690 transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D DSD31_19565 DNA-binding transcriptional repressor AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D DSD31_00640 nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D DSD31_16090 HTH-type transcriptional regulator RutR K09017 rutR; TetR/AcrR family transcriptional regulator
D DSD31_00405 TetR/AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D DSD31_11455 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D DSD31_15710 TetR/AcrR family transcriptional regulator K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
D DSD31_25105 HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D DSD31_17495 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D DSD31_17220 TetR family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D DSD31_25655 transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D DSD31_10320 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DSD31_16950 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DSD31_08335 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DSD31_19740 Lrp/AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D DSD31_09090 transcriptional regulator SdiA K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D DSD31_09050 transcriptional regulator RcsA K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D DSD31_04030 transcriptional regulator CsgD K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D DSD31_22085 DNA-binding transcriptional activator BglJ K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides
D DSD31_01830 HTH-type transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D DSD31_12560 multiple antibiotic resistance transcriptional regulator MarR K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR
D DSD31_11850 MarR family transcriptional regulator K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR
D DSD31_11490 transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D DSD31_14065 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D DSD31_22380 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D DSD31_05655 transcriptional repressor MprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
C MerR family
D DSD31_19445 HTH-type transcriptional regulator CueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D DSD31_02345 Zn(2+)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D DSD31_24030 redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D DSD31_08095 transcriptional regulator K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes
D DSD31_12185 helix-turn-helix-type transcriptional regulator K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes
C Fur family
D DSD31_18065 ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D DSD31_24185 transcriptional regulator Zur K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D DSD31_24370 acetate operon transcriptional repressor IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D DSD31_11805 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D DSD31_19860 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D DSD31_13410 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D DSD31_10700 mhpR; DNA-binding transcriptional activator MhpR K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator
D DSD31_09500 DNA-binding transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D DSD31_22935 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D DSD31_01710 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D DSD31_00950 IclR family transcriptional regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
C CRP/FNR family
D DSD31_02065 cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DSD31_11765 fumarate/nitrate reduction transcriptional regulator Fnr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D DSD31_06550 Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D DSD31_23515 HTH-type transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D DSD31_05950 transcriptional regulator K19587 oqxR; Rrf2 family transcriptional regulator, repressor of oqxAB
C ArsR family
D DSD31_11150 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D DSD31_13810 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D DSD31_17390 transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D DSD31_08970 MurR/RpiR family transcriptional regulator K23238 rpiR; RpiR family transcriptional regulator, repressor of rpiB and als operon
D DSD31_23905 MurR/RpiR family transcriptional regulator K23238 rpiR; RpiR family transcriptional regulator, repressor of rpiB and als operon
D DSD31_09360 MurR/RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D DSD31_16880 MurR/RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D DSD31_22145 MurR/RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D DSD31_05165 MurR/RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D DSD31_23160 MurR/RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D DSD31_24615 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D DSD31_02455 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D DSD31_21935 trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D DSD31_02835 sfsB; DNA-binding transcriptional regulator SfsB K07724 ner; Ner family transcriptional regulator
D DSD31_22800 transcriptional regulator K07724 ner; Ner family transcriptional regulator
D DSD31_21530 transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator
D DSD31_21950 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D DSD31_16200 puuR; HTH-type transcriptional regulator PuuR K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D DSD31_12960 type II toxin-antitoxin system antitoxin HipB K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D DSD31_22460 dagR; transcriptional regulator DagR K17473 dgaR; sigma-54 dependent transcriptional regulator, dga operon transcriptional activator
D DSD31_05770 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D DSD31_05495 nitric oxide reductase transcriptional regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator
D DSD31_05380 formate hydrogenlyase transcriptional activator FlhA K15836 fhlA; formate hydrogenlyase transcriptional activator
D DSD31_20970 CdaR family transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D DSD31_17740 molybdenum-dependent transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D DSD31_05375 transporter K02019 modE; molybdate transport system regulatory protein
D DSD31_01055 HTH-type transcriptional regulator K07726 K07726; putative transcriptional regulator
D DSD31_14105 helix-turn-helix domain-containing protein K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D DSD31_01410 nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
D DSD31_25195 met regulon transcriptional regulator MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D DSD31_16080 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
D DSD31_08015 transcriptional antiterminator BglG K03488 licT; beta-glucoside operon transcriptional antiterminator
D DSD31_19080 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
C Others
D DSD31_13925 metal/formaldehyde-sensitive transcriptional repressor K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D DSD31_14985 transcriptional repressor RcnR K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression
D DSD31_19820 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D DSD31_13765 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator
D DSD31_24695 transcription/translation regulatory transformer protein RfaH K05785 rfaH; transcriptional antiterminator RfaH
D DSD31_02595 transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism
D DSD31_18110 ROK family transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D DSD31_12020 ROK family transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene
D DSD31_00830 MltR family transcriptional regulator K02562 mtlR; mannitol operon repressor
D DSD31_12480 TenA family transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D DSD31_14655 transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D DSD31_19230 transcriptional regulator CadC K03765 cadC; transcriptional activator of cad operon
D DSD31_06795 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D DSD31_14115 paaX; phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D DSD31_14690 phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D DSD31_14675 envelope stress response membrane protein PspC K03973 pspC; phage shock protein C
D DSD31_03255 transcriptional regulator LsrR K11531 lsrR; lsr operon transcriptional repressor
D DSD31_03375 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR K05880 dhaR; transcriptional activator for dhaKLM operon
D DSD31_18345 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D DSD31_06095 AlpA family phage regulatory protein K07733 alpA; prophage regulatory protein
D DSD31_04040 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D DSD31_21140 RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D DSD31_19980 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D DSD31_20570 Crl family RNA polymerase assembly factor K11926 crl; sigma factor-binding protein Crl
D DSD31_21460 transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0