+F Repair protein KO
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DNA Repair and Recombination Proteins - Mucinivorans hirudinis
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E BN938_1126 Uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BN938_2201 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D BN938_1594 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BN938_1880 Methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E BN938_1126 Uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BN938_2201 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E BN938_2355 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E BN938_2388 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E BN938_2975 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E BN938_0829 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E BN938_0024 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E BN938_2152 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E BN938_2593 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E BN938_1332 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E BN938_0354 ATP-dependent DNA helicase UvrD/PcrA/Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BN938_3031 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BN938_0829 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E BN938_2975 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F BN938_1296 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F BN938_1298 DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F BN938_0891 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F BN938_1517 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E BN938_0165 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E BN938_2354 Recombination inhibitory protein MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E BN938_2826 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E BN938_1316 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E BN938_1317 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E BN938_2142 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BN938_1743 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BN938_1745 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BN938_2839 DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E BN938_2762 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E BN938_1644 DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E BN938_0938 DNA Pol III Epsilon Chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BN938_1534 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BN938_1571 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E BN938_2975 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E BN938_0354 ATP-dependent DNA helicase UvrD/PcrA/Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BN938_3031 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BN938_1548 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E BN938_0136 phage assoficated DNA adenine methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E BN938_2380 Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E BN938_1027 RecA protein K03553 recA; recombination protein RecA
E BN938_0940 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BN938_2970 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BN938_1504 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BN938_2973 Helicase PriA essential for oriC/DnaA-independent DNA replication K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E BN938_2934 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
E BN938_1751 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
E BN938_2933 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11
E BN938_1752 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E BN938_1027 RecA protein K03553 recA; recombination protein RecA
E BN938_1212 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E BN938_2871 DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E BN938_0683 ATP-dependent DNA helicase RecG-related protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BN938_1084 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BN938_2180 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BN938_2538 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BN938_2560 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BN938_0455 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BN938_0680 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BN938_2388 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E BN938_1318 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E BN938_0161 Recombination protein RecR K06187 recR; recombination protein RecR
E BN938_1449 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E BN938_0940 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BN938_2970 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BN938_1504 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E BN938_2924 ATP-dependent DNA helicase UvrD/PcrA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D Other HR factor
E BN938_2341 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E BN938_2934 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
E BN938_1751 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
E BN938_2933 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11
E BN938_1752 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F BN938_2952 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F BN938_1879 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F BN938_1918 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F BN938_1095 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F BN938_2926 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F BN938_1172 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F BN938_1842 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F BN938_1618 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F BN938_2388 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F BN938_1318 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F BN938_0161 Recombination protein RecR K06187 recR; recombination protein RecR
F BN938_2975 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F BN938_1040 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F BN938_2972 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F BN938_0024 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F BN938_2152 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F BN938_2593 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D BN938_1238 Error-prone lesion bypass DNA polymerase V (UmuC) K03502 umuC; DNA polymerase V
D BN938_1236 Error-prone repair protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D BN938_1027 RecA protein K03553 recA; recombination protein RecA
D BN938_1449 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D BN938_1548 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BN938_1557 Putative regulatory protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D BN938_1594 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BN938_2877 Ribonucleotide reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024