+F Repair protein KO #

  DNA Repair and Recombination Proteins - Mucinivorans hirudinis

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E BN938_1126 Uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BN938_2201 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BN938_1594 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BN938_1880 Methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BN938_1126 Uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BN938_2201 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BN938_2355 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E BN938_2388 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BN938_2975 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BN938_0829 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BN938_0024 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E BN938_2152 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E BN938_2593 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E BN938_1332 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E BN938_0354 ATP-dependent DNA helicase UvrD/PcrA/Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BN938_3031 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BN938_0829 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E BN938_2975 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BN938_1296 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BN938_1298 DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BN938_0891 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BN938_1517 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BN938_0165 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E BN938_2354 Recombination inhibitory protein MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E BN938_2826 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BN938_1316 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BN938_1317 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BN938_2142 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BN938_1743 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BN938_1745 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BN938_2839 DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BN938_2762 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BN938_1644 DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BN938_0938 DNA Pol III Epsilon Chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BN938_1534 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BN938_1571 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BN938_2975 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BN938_0354 ATP-dependent DNA helicase UvrD/PcrA/Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BN938_3031 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BN938_1548 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E BN938_0136 phage assoficated DNA adenine methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E BN938_2380 Methyl-directed repair DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BN938_1027 RecA protein K03553 recA; recombination protein RecA E BN938_0940 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BN938_2970 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BN938_1504 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BN938_2973 Helicase PriA essential for oriC/DnaA-independent DNA replication K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BN938_2934 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E BN938_1751 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E BN938_2933 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 E BN938_1752 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E BN938_1027 RecA protein K03553 recA; recombination protein RecA E BN938_1212 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E BN938_2871 DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF E BN938_0683 ATP-dependent DNA helicase RecG-related protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BN938_1084 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BN938_2180 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BN938_2538 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BN938_2560 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BN938_0455 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BN938_0680 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BN938_2388 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BN938_1318 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E BN938_0161 Recombination protein RecR K06187 recR; recombination protein RecR E BN938_1449 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E BN938_0940 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BN938_2970 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BN938_1504 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E BN938_2924 ATP-dependent DNA helicase UvrD/PcrA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D Other HR factor E BN938_2341 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E BN938_2934 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E BN938_1751 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E BN938_2933 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 E BN938_1752 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BN938_2952 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BN938_1879 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BN938_1918 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BN938_1095 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F BN938_2926 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F BN938_1172 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F BN938_1842 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F BN938_1618 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BN938_2388 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BN938_1318 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F BN938_0161 Recombination protein RecR K06187 recR; recombination protein RecR F BN938_2975 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F BN938_1040 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BN938_2972 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BN938_0024 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F BN938_2152 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F BN938_2593 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BN938_1238 Error-prone lesion bypass DNA polymerase V (UmuC) K03502 umuC; DNA polymerase V D BN938_1236 Error-prone repair protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D BN938_1027 RecA protein K03553 recA; recombination protein RecA D BN938_1449 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D BN938_1548 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BN938_1557 Putative regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D BN938_1594 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BN938_2877 Ribonucleotide reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024