+D Messenger RNA Biogenesis KO
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Prokaryotic Defense System - Rugosibacter aromaticivorans
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ACRISPR-Cas system
B Universal Cas proteins
C PG1C_12155 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
C PG1C_07835 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
C PG1C_12150 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2
C PG1C_07830 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2
B Type I CRISPR-Cas system
C Type I signiture cas proteins
C Subtype I-A factors
D PG1C_12160 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-B factors
D PG1C_12160 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-C factors
D PG1C_12175 hypothetical protein K19117 csd1; CRISPR-associated protein Csd1
D PG1C_12170 hypothetical protein K19118 csd2; CRISPR-associated protein Csd2
D PG1C_12160 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-D factors
D PG1C_12160 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-E factors
C Subtype I-F factors
C Subtype I-U factors
B Type II CRISPR-Cas system
C Type II signiture cas proteins
D PG1C_07840 CRISPR-associated protein Csn1 K09952 csn1; CRISPR-associated endonuclease Csn1 [EC:3.1.-.-]
C Subtype II-A factors
C Subtype II-B factors
D PG1C_12160 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
B Type III CRISPR-Cas system
C Type III signiture cas proteins
C Subtype III-A factors
C Subtype III-B factors
C Subtype III-U factors
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ARestriction and modification system (R-M system)
B Type I R-M system
C PG1C_03540 restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C PG1C_10450 restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C PG1C_10430 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
B Type II R-M system
C Restriction endonucleases
C DNA methyltransferases
D PG1C_10720 DNA methyltransferase K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D PG1C_02805 cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
B Type III R-M system
C PG1C_07920 type III restriction enzyme, res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5]
C PG1C_01030 restriction endonuclease subunit R K01156 res; type III restriction enzyme [EC:3.1.21.5]
C PG1C_04095 restriction endonuclease K01156 res; type III restriction enzyme [EC:3.1.21.5]
C PG1C_05565 type III restriction enzyme, res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5]
C PG1C_00655 restriction endonuclease subunit R K01156 res; type III restriction enzyme [EC:3.1.21.5]
C PG1C_01035 DNA methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
C PG1C_04105 DNA methylase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
C PG1C_07915 DNA methylase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
C PG1C_05580 DNA methylase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
C PG1C_00660 DNA methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
B Type IV R-M system
C PG1C_02640 restriction endonuclease K07448 mrr; restriction system protein
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AToxin-antitoxin system (TA system)
B Type I TA system
C Hok-Sok
C SymE-SymR
C Ldr-Rdl
C TisB-IstR
C Ibs-Sib
C ShoB-OhsC
C RalR-RalA
B Type II TA system
C MazF-MazE
C ChpB-ChpS
C YhaV-PrlF
D PG1C_12385 toxin K19155 yhaV; toxin YhaV [EC:3.1.-.-]
D PG1C_12380 regulator K19156 prlF; antitoxin PrlF
C RelE/StbE-RelB/StbD
C YafQ-dinJ
D PG1C_09185 addiction module antitoxin K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D PG1C_09190 translation repressor RelB K07473 dinJ; DNA-damage-inducible protein J
C YoeB-YefM
D PG1C_11405 toxin YoeB K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D PG1C_01070 toxin of toxin-antitoxin system K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D PG1C_11410 hypothetical protein K19159 yefM; antitoxin YefM
D PG1C_01075 antitoxin K19159 yefM; antitoxin YefM
C HipA-HipB
D PG1C_05230 phosphatidylinositol kinase K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
C HicA-HicB
C YafO-YafN
C Hha-TomB
C PspC-PspB
C CcdB-CcdA
D PG1C_03205 hypothetical protein K19164 ccdA; antitoxin CcdA
C ParE-ParD
D PG1C_08870 plasmid stabilization system protein K19092 parE1_3_4; toxin ParE1/3/4
D PG1C_08875 CopG family transcriptional regulator K07746 parD1_3_4; antitoxin ParD1/3/4
C Doc-Phd
D PG1C_02520 hypothetical protein K07341 doc; death on curing protein
C HigB-HigA
D PG1C_11380 excinuclease ABC subunit A K07334 higB-1; toxin HigB-1
D PG1C_05355 hypothetical protein K07334 higB-1; toxin HigB-1
D PG1C_11385 XRE family transcriptional regulator K21498 higA-1; antitoxin HigA-1
D PG1C_05350 virulence factor K21498 higA-1; antitoxin HigA-1
C MqsR-MqsA
C VapC-VapB
C PezT-PezA
C YobL-YobK
C YokI-YokJ
C YqcG-YqcF
C YxiD-YxxD
C FitB-FitA
D PG1C_07825 twitching motility protein PilT K07062 fitB; toxin FitB [EC:3.1.-.-]
D PG1C_13075 recombinase K07062 fitB; toxin FitB [EC:3.1.-.-]
C BC_0920-BC_0921
C Type II TA system related factors
D PG1C_02605 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D PG1C_00070 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D PG1C_09125 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D PG1C_07395 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
B Type III TA system
C AbiQ system
B Type IV TA system
C YeeV-YeeU
C CptA-CptB
D PG1C_07675 hypothetical protein K19168 cptA; toxin CptA
B Type V TA system
C GhoT-GhoS
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ADNA phosphothiolation system
B Sulfur modification proteins
C PG1C_03115 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C PG1C_03120 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
B DNA phosphorothioation-dependent restriction proteins
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023