+F Chromosome and associated proteins KO #

  Chromosome and Associated Proteins - Ruminococcus champanellensis

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AEukaryotic type B Sister chromatid cohesion proteins C Cohesin complex C Adherin complex C CTF18-RFC complex C Fork protection complex C Other sister chromatid cohesion factors B Meiosis-specific proteins C Cohesin complex and associated proteins C Synaptonemal complex C DSB formation-related proteins C Others B Nucleosome assembly factors C Histones C Histone chaperones D Nucleoplasmins D NAPs (Nucleosome assembly proteins) D CAF-1 D FACT complex D Other Histone chaperones and regulators C HMG (high mobility group) proteins B Histone modification proteins C HATs (histone acetyltransferases) C HAT complexes D PCAF complex D STAGA complex D TFTC complex D TIP60 complex D HBO1 complex D MOZ/MORF complex D SAGA complex D SLIK complex D ADA-HAT complex D HAT-A2 complex D ATAC complex D HATB complex D NSL complex D MSL complex D NuA3 complex D NuA4 complex D SAS complex C HDACs (histone deacetylases) D Class I HDACs D Class II HDACs D SIRTs (sirtuins, class III HDACs) D Class IV HDACs C HDAC complexes D Sin3A-HDAC complex D BRAF-HDAC complex D REST complex D SHIP complex D MiDAC complex D SMART complex D Other HDAC associated proteins C HMTs (histone methyltransferases) D HKMTs (histone lysine methyltransferases) D PRMTs (protein arginine metyltransferases) C HMT complexes D COMPASS/SET1 complex D COMPASS/SET1 complex (yeast) D MLL-HCF complex D MLL3/MLL4 complex D Dot1-containing complex C Histone demethylases C Polycomb repressive complex (PRC) and associated proteins D Canonical PRC1 (PRC1.2/1.4) E PRC1.4 specific proteins D Noncanonical PRC1 (PRC1.1) D Noncanonical PRC1 (PRC1.3/1.5) D Noncanonical PRC1 (PRC1.6) D PRC2.1 D PRC2.2 D PR-DUB complex D Other PRC associated proteins C Sir proteins C Other histone modification proteins B Chromosome condensation proteins C Condensin I C Condensin II C Other regulators of chromosome condensation B Centromeric chromatin formation proteins C Kinetochore proteins D Centromere proteins D CPC (chromosomal passenger complex) D KMN network proteins E MIS12 complex E NDC80 complex D Mis6 complex D COMA complex D NMS complex E NDC80 complex E MIND kinetochore complex D MIS16-MIS18 complex D DASH complex D CBF3 complex D Others C SAC (spindle assembly checkpoint) factors D Core SAC proteins D Motor proteins E RZZ complex E Dynein complex D Protein kinases D Others C Other centromeric chromatin formation proteins D Shugoshin D PP2A (protein phosphatase 2A) B Heterochromatin formation proteins C HP1 (heterochromatin protein 1) C MBPs (metylated DNA binding proteins) C Other heterochromatin formation proteins D RUM_01270 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RUM_01640 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RUM_11950 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RUM_20080 Site-specific DNA methylase K17398 DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37] B Gene silencing C RISC (RNA-induced silencing complex) C piRNA pathway C RNA interference (RNAi) pathway D RITS (RNA-induced transcriptional silencing) complex D RDRC (RNA-directed RNA polymerase complex) D Other RNAi proteins C microRNA pathway D Microprocessor complex D RISC loading complex D Other miRNA pathway proteins C Transposable elements B Centrosome formation proteins C Centriole proteins C Pericentriolar materials (PCM) D Centriolar satellite D Other PCM proteins C Cyclins C Kinases and associated factors D Kinase anchoring protein C Microtubules and associated factors D gamma-tubulin ring complex D Other tubulins D Dynactin complex D BRISC complex D Microtubule-associated proteins C Augmin complex C Centrosome duplication proteins D Centriole replication proteins D Regulators of centriole replication D Other centrosome duplication proteins C Nde1-Su48 complex C LINC complex C 3M complex C Gypsy chromatin insulator complex C Other centrosome associated proteins D RUM_04230 Uncharacterized protein conserved in bacteria K07192 FLOT; flotillin C Spindle formation proteins B Sister chromatid separation proteins C Securin and associated proteins C Separase C APC/C complex C Aurora kinases D Regulators of Aurora kinases C TACC proteins C Polo kinases C Early mitotic inhibitors B Chromatin remodeling factors C BAF complex C PBAF complex C GBAF(ncBAF) complex C CHRAC complex C RSF complex C WICH complex C B-WICH complex C NORC complex C BRF complex C NuRD complex C NuRF complex C NuRF complex (fruit fly) C CERF complex C SRCAP complex C INO80 complex C INO80 complex (yeast) C RSC complex C SWI/SNF complex C SWR1 complex C ASTRA complex C Other chromatin remodeling factors # AProkaryotic type B Nucleoid associated proteins C HNS (histone-like nucleoid structuring protein) C HU (heat unstable protein) D RUM_10100 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D RUM_18320 bacterial nucleoid protein Hbs K03530 hupB; DNA-binding protein HU-beta C IHF (integration host factor) C Other nucleoid associated proteins D RUM_02770 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D RUM_08870 RNA-binding protein Hfq K03666 hfq; host factor-I protein B Chromosome partitioning proteins C MukBEF complex C Condensin-like complex D RUM_12950 chromosome segregation protein SMC, common bacterial type K03529 smc; chromosome segregation protein D RUM_13620 Uncharacterized conserved protein K05896 scpA; segregation and condensation protein A D RUM_13610 segregation and condensation protein B K06024 scpB; segregation and condensation protein B C Divisome proteins D RUM_15050 Bacterial cell division membrane protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28] D RUM_09800 Cell division protein K09811 ftsX; cell division transport system permease protein D RUM_15090 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RUM_06040 Cell division protein ZapA. K09888 zapA; cell division protein ZapA D RUM_11340 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RUM_21670 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C Inhibitors of FtsZ assembly D RUM_06120 Septum formation inhibitor-activating ATPase K03609 minD; septum site-determining protein MinD D RUM_08920 DivIVA domain K04074 divIVA; cell division initiation protein D RUM_08900 Uncharacterized protein conserved in bacteria K09772 sepF; cell division inhibitor SepF C Other chromosome partitioning proteins D RUM_06080 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D RUM_19530 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D RUM_06090 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D RUM_12080 Bacterial cell division membrane protein K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28] D RUM_03030 chromosome segregation ATPase K03496 parA; chromosome partitioning protein D RUM_03020 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RUM_03040 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RUM_03000 glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D RUM_03010 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D RUM_12910 tRNA:m(5)U-54 methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D RUM_23380 Protein involved in cell division K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D RUM_08640 ribosome biogenesis GTP-binding protein YsxC/EngB K03978 engB; GTP-binding protein D RUM_16670 conserved hypothetical protein K09762 whiA; cell division protein WhiA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2025