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Transcription Machinery - Rhodococcus coprophilus
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E NCTC10994_01826 DNA repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E NCTC10994_03750 rpoA; DNA-directed RNA polymerase alpha subunit rpoa K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E NCTC10994_03641 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E NCTC10994_03642 rpoC; DNA-directed RNA polymerase beta subunit rpoc K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E NCTC10994_00648 rpoZ; DNA-directed RNA polymerase omega subunit rpoz K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E NCTC10994_00799 sigA; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
E NCTC10994_00807 hrdB; RNA polymerase sigma factor SigB K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
E NCTC10994_00211 ECF family sigma-70 type sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E NCTC10994_00607 RNA polymerase ECF-type sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E NCTC10994_00686 RNA polymerase ECF-type sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E NCTC10994_01449 sigV; ECF family sigma-70 type sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E NCTC10994_01655 ECF family sigma-70 type sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E NCTC10994_01830 RNA polymerase sigma factor SigJ K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E NCTC10994_02548 sigK; RNA polymerase sigma factor SigK K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E NCTC10994_02632 rpoE_1; sigma-70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E NCTC10994_02692 RNA polymerase sigma factor SigD K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E NCTC10994_03075 sigG; sigma-70 factor sigg K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E NCTC10994_03788 sigE; RNA polymerase sigma factor SigD K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E NCTC10994_03939 rpoE_2; sigma-70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E NCTC10994_03499 sigB; RNA polymerase sigma factor SigF K03090 sigB; RNA polymerase sigma-B factor
C Other transcription-related factors
D RNA polymerase-associated proteins
E NCTC10994_00901 nusA; transcriptional termination/antitermination factor nusa K02600 nusA; transcription termination/antitermination protein NusA
E NCTC10994_00658 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
E NCTC10994_03625 nusG; transcription antitermination protein nusg K02601 nusG; transcription termination/antitermination protein NusG
E NCTC10994_00746 rsbP; two component system response regulator K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E NCTC10994_00745 rsbQ; hydrolase K19707 rsbQ; sigma-B regulation protein RsbQ
E NCTC10994_01133 rsbV; anti sigma factor antagonist K04749 rsbV; anti-sigma B factor antagonist
E NCTC10994_01134 anti sigma factor K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
E NCTC10994_01523 anti sigma factor K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
E NCTC10994_03500 anti-sigma factor K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D Transcription elongation factors
E NCTC10994_01578 greA; transcription elongation factor grea/greb K03624 greA; transcription elongation factor GreA
D Transcription termination factor
E NCTC10994_01179 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024