+E Ribosome biogenesis KO
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Ribosome Biogenesis - Rhizobium etli CFN 42
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D RHE_CH01390 rnc; ribonuclease III protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C RHE_CH01391 era; GTP-binding protein K03595 era; GTPase
C RHE_CH04067 probable GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C RHE_CH02329 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C RHE_CH00118 nusA; N-utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C RHE_CH01526 nusB; transcription antitermination protein B K03625 nusB; transcription antitermination protein NusB
C RHE_CH01662 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D RHE_CH01449 ksgA; dimethyladenosine transferase (16S rRNA dimethylase) protein K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D RHE_CH00305 sun; tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D RHE_CH04109 probable RNA methyltransferase - sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D RHE_CH00110 probable rRNA (guanine-N2-)-methyltransferase, small subunit protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D RHE_CH00836 putative methylase protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D RHE_CH00804 hypothetical conserved protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D RHE_CH04121 gidB; glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RHE_CH02855 mraW; S-adenosyl-methyltransferase protein K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D RHE_CH00319 probable methyltransferase protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D RHE_CH00911 tlyA; hemolysin protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D RHE_CH01655 probable tRNA/rRNA methyltransferase protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D RHE_CH00789 ftsJ; cell division protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D RHE_CH04076 hypothetical conserved protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D RHE_CH00394 probable SAM-dependent methyltransferase protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D RHE_CH01483 putative DNA methylase protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D RHE_CH03930 hypothetical conserved protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D RHE_CH00911 tlyA; hemolysin protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D RHE_CH00910 probable RNA-methyltransferase protein K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D RHE_CH00835 rluB; pseudouridylate synthase, subunit B protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RHE_CH03406 probable pseudouridylate synthase, ribosomal large subunit protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RHE_CH02236 rluC; pseudouridylate synthase, ribosomal large subunit C protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D RHE_CH03341 rluD; pseudouridylate synthase, ribosomal large subunit D protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C RHE_CH00379 rimI; ribosomal-protein-alanine N-acetyltransferase protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C RHE_CH01860 probable acetyltransferase protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C RHE_CH00977 rimJ; alanine acetyltransferase (ribosomal) protein K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C RHE_CH03960 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
C RHE_CH02828 prmA; ribosomal protein L11 methyltransferase protein K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C RHE_CH01390 rnc; ribonuclease III protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
C RHE_CH01645 rne; ribonuclease E protein K08300 rne; ribonuclease E [EC:3.1.26.12]
C RHE_CH01852 probable holliday junction resolvase protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C RHE_CH02179 deaD; ATP-dependent RNA helicase protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C RHE_CH01391 era; GTP-binding protein K03595 era; GTPase
C RHE_CH03108 engA; GTP-binding protein K03977 engA; GTPase
C RHE_CH04067 probable GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C RHE_CH01955 hflX; GTP-binding protein K03665 hflX; GTPase
B Other maturation factors
C RHE_CH00899 probable translation factor sua5 protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C RHE_CH01385 relA; guanosine-3`,5`-bis(diphosphate) 3`-pyrophosphohydrolase protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C RHE_CH00115 rbfA; ribosome binding factor A, rRNA processing protein K02834 rbfA; ribosome-binding factor A
C RHE_CH00119 hypothetical conserved protein K09748 rimP; ribosome maturation factor RimP
C RHE_CH04075 hypothetical conserved protein K09710 ybeB; ribosome-associated protein
C RHE_CH00374 hypothetical conserved protein K07042 ybeY; probable rRNA maturation factor
C RHE_CH00406 probable sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C RHE_CH03031 putative GTP-binding protein K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024