+D GENES KO
#
KEGG Orthology (KO) - Reinekea forsetii
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:rfo00010]
D REIFOR_02277 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D REIFOR_02606 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D REIFOR_00829 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D REIFOR_00207 fructose-1,6-bisphosphatase, type I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D REIFOR_00052 fructose-1,6-bisphosphatase, GlpX type K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D REIFOR_03212 fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D REIFOR_03262 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D REIFOR_00476 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D REIFOR_02042 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D REIFOR_01277 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D REIFOR_02259 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D REIFOR_03213 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D REIFOR_00889 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D REIFOR_00955 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D REIFOR_02102 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D REIFOR_02282 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D REIFOR_02283 pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D REIFOR_01831 pyruvate dehydrogenase E1 component alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D REIFOR_01830 pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D REIFOR_02284 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D REIFOR_01566 dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_01880 dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_03045 bifunctional alcohol dehydrogenase / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D REIFOR_01351 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D REIFOR_02352 aldehyde dehydrogenase family protein K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D REIFOR_03205 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D REIFOR_02115 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D REIFOR_01265 aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D REIFOR_00524 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:rfo00020]
D REIFOR_01559 citrate synthase (si) K01647 CS; citrate synthase [EC:2.3.3.1]
D REIFOR_02100 bifunctional aconitate hydratase 2 / 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D REIFOR_01583 monomeric isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D REIFOR_01564 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D REIFOR_01565 dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D REIFOR_01566 dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_01880 dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_01568 succinyl-CoA ligase [ADP-forming] alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D REIFOR_01567 succinyl-CoA ligase [ADP-forming] beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D REIFOR_01562 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D REIFOR_01563 succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D REIFOR_01560 succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D REIFOR_01561 succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D REIFOR_02583 fumarate hydratase class I, aerobic K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D REIFOR_01090 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D REIFOR_00524 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D REIFOR_02283 pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D REIFOR_01831 pyruvate dehydrogenase E1 component alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D REIFOR_01830 pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D REIFOR_02284 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:rfo00030]
D REIFOR_02606 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D REIFOR_02280 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D REIFOR_02279 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D REIFOR_02500 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D REIFOR_03003 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D REIFOR_00073 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D REIFOR_01386 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D REIFOR_00793 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D REIFOR_03186 ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D REIFOR_02439 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D REIFOR_02441 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D REIFOR_00568 phosphonate metabolism 1,5-bisphosphokinase K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23]
D REIFOR_01371 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D REIFOR_02729 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D REIFOR_02278 phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D REIFOR_02276 4-hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxyphosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D REIFOR_01241 gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D REIFOR_02501 gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D REIFOR_03212 fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D REIFOR_03262 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D REIFOR_00207 fructose-1,6-bisphosphatase, type I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D REIFOR_00052 fructose-1,6-bisphosphatase, GlpX type K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D REIFOR_00829 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:rfo00040]
D REIFOR_01446 UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D REIFOR_02285 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D REIFOR_00792 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D REIFOR_03003 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D REIFOR_00789 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D REIFOR_00791 ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16]
D REIFOR_00743 ketoglutarate semialdehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D REIFOR_01899 aldehyde dehydrogenase family protein K22187 xylA; alpha-ketoglutaric semialdehyde dehydrogenase [EC:1.2.1.-]
C 00051 Fructose and mannose metabolism [PATH:rfo00051]
D REIFOR_01067 endo-beta-1,4-mannanase, CBM10 (3x), GH26 family K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D REIFOR_02995 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D REIFOR_01492 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D REIFOR_00745 L-fuco-beta-pyranose dehydrogenase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D REIFOR_00754 L-fuconolactone hydrolase K07046 E3.1.1.120; L-fucono-1,5-lactonase [EC:3.1.1.120]
D REIFOR_00750 2-keto-3-deoxy-L-fuconate dehydrogenase K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434]
D REIFOR_00746 2,4-diketo-3-deoxy-L-fuconate hydrolase K18336 lra6; 2,4-didehydro-3-deoxy-L-rhamnonate hydrolase [EC:3.7.1.26]
D REIFOR_01147 mannosyl-3-phosphoglycerate phosphatase family protein K07026 E3.1.3.70; mannosyl-3-phosphoglycerate phosphatase [EC:3.1.3.70]
D REIFOR_00829 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D REIFOR_00207 fructose-1,6-bisphosphatase, type I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D REIFOR_00052 fructose-1,6-bisphosphatase, GlpX type K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D REIFOR_03095 alcohol dehydrogenase, zinc-binding protein K19956 sorE; L-sorbose 1-phosphate reductase [EC:1.1.1.-]
D REIFOR_03096 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D REIFOR_03212 fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D REIFOR_03262 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D REIFOR_00476 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D REIFOR_03092 PTS fructose transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D REIFOR_03093 PTS fructose transporter K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
C 00052 Galactose metabolism [PATH:rfo00052]
D REIFOR_02115 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D REIFOR_02114 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D REIFOR_02113 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D REIFOR_02567 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D REIFOR_02285 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D REIFOR_02277 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D REIFOR_03326 beta-galactosidase, GH2 family K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D REIFOR_00812 alpha-galactosidase, GH4 family K07406 melA; alpha-galactosidase [EC:3.2.1.22]
D REIFOR_02177 alpha-galactosidase, GH36 family K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D REIFOR_00829 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D REIFOR_01234 galactonate dehydratase K01684 dgoD; galactonate dehydratase [EC:4.2.1.6]
D REIFOR_01236 galactonate dehydratase K01684 dgoD; galactonate dehydratase [EC:4.2.1.6]
D REIFOR_01232 2-dehydro-3-deoxygalactonokinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
D REIFOR_01235 2-dehydro-3-deoxyphosphogalactonate aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]
D REIFOR_02169 alpha-glucosidase, GH31 family K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D REIFOR_02378 maltodextrin glucosidase, CBM34, GH13 family K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D REIFOR_00784 oligo-1,6-glucosidase, GH13 family K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D REIFOR_00851 oligo-1,6-glucosidase, GH13 family K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
C 00053 Ascorbate and aldarate metabolism [PATH:rfo00053]
D REIFOR_01446 UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D REIFOR_00745 L-fuco-beta-pyranose dehydrogenase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D REIFOR_01443 dTDP-glucose 4,6-dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D REIFOR_00792 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D REIFOR_01351 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D REIFOR_01233 dihydrodipicolinate synthetase K13876 araD; 2-keto-3-deoxy-L-arabinonate dehydratase [EC:4.2.1.43]
D REIFOR_00743 ketoglutarate semialdehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
C 00500 Starch and sucrose metabolism [PATH:rfo00500]
D REIFOR_02169 alpha-glucosidase, GH31 family K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D REIFOR_02378 maltodextrin glucosidase, CBM34, GH13 family K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D REIFOR_03159 aglA; alpha-glucosidase AglA, GH13 family K05341 E2.4.1.4; amylosucrase [EC:2.4.1.4]
D REIFOR_01149 putative sucrose phosphorylase, GH13 family K00690 E2.4.1.7; sucrose phosphorylase [EC:2.4.1.7]
D REIFOR_02285 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D REIFOR_03254 beta-glucosidase, GH1 family K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D REIFOR_01419 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D REIFOR_01418 glycogen synthase, ADP-glucose transglucosylase, GT5 family K00703 glgA; starch synthase [EC:2.4.1.21]
D REIFOR_03119 1,4-alpha-glucan (glycogen) branching enzyme, CBM48, GH13 family K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D REIFOR_00922 glycogen phosphorylase, GT35 family K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D REIFOR_02823 pullulanase, CBM41/CBM48, GH13 family K01200 pulA; pullulanase [EC:3.2.1.41]
D REIFOR_03063 pullulanase, CBM41/CBM48, GH13 family K01200 pulA; pullulanase [EC:3.2.1.41]
D REIFOR_01124 alpha-amylase precursor (1,4-alpha-D-glucan glucanohydrolase), CBM20, GH13 family K01176 AMY; alpha-amylase [EC:3.2.1.1]
D REIFOR_00784 oligo-1,6-glucosidase, GH13 family K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D REIFOR_00851 oligo-1,6-glucosidase, GH13 family K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D REIFOR_02275 4-alpha-glucanotransferase (amylomaltase), GH77 family K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D REIFOR_03118 glgX; glycogen debranching enzyme GlgX, CBM48, GH13 family K01214 ISA; isoamylase [EC:3.2.1.68]
D REIFOR_02277 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D REIFOR_02606 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D REIFOR_02995 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rfo00520]
D REIFOR_02599 nagA; N-acetylglucosamine-6-phosphate deacetylase NagA, CE9 family K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D REIFOR_02600 nagB; glucosamine-6-phosphate deaminase NagB K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D REIFOR_02597 N-acetylglucosamine kinase NagK K18676 gspK; glucosamine kinase [EC:2.7.1.8]
D REIFOR_02995 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D REIFOR_00272 glmS; glucosamine--fructose-6-phosphate aminotransferase (isomerizing) GlmS K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D REIFOR_00475 glmM; phosphoglucosamine mutase GlmM K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D REIFOR_00271 glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D REIFOR_02382 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D REIFOR_01650 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D REIFOR_02428 nanK; N-acetylmannosamine kinase NanK K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60]
D REIFOR_02429 nanE; N-acetylmannosamine-6-phosphate epimerase NanE K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D REIFOR_02427 nanA; N-acetylneuraminate lyase NanA K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D REIFOR_00241 UDP-glucose dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D REIFOR_01449 UDP-N-acetylglucosamine 4,6-dehydratase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D REIFOR_01453 surface polysaccharide biosynthesis protein / glycosyltransferase, GT28 family K15897 pseG; UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase [EC:3.6.1.57]
D REIFOR_02277 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D REIFOR_02285 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D REIFOR_01446 UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D REIFOR_02114 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D REIFOR_02113 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D REIFOR_02567 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D REIFOR_01443 dTDP-glucose 4,6-dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D REIFOR_02606 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D REIFOR_01492 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D REIFOR_02853 2-polyprenylphenol hydroxylase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D REIFOR_01419 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:rfo00620]
D REIFOR_03205 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D REIFOR_02283 pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D REIFOR_01831 pyruvate dehydrogenase E1 component alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D REIFOR_01830 pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D REIFOR_02284 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D REIFOR_01566 dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_01880 dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_00828 pyruvate formate-lyase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D REIFOR_03045 bifunctional alcohol dehydrogenase / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D REIFOR_01379 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D REIFOR_02102 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D REIFOR_02282 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D REIFOR_00951 acetyl-coenzyme A carboxyl transferase alpha chain K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D REIFOR_02692 biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D REIFOR_02693 biotin carboxylase of acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D REIFOR_01987 acetyl-coenzyme A carboxyl transferase beta chain K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D REIFOR_01017 acylphosphate phosphohydrolase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D REIFOR_01351 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D REIFOR_02352 aldehyde dehydrogenase family protein K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D REIFOR_00405 L-lactate dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D REIFOR_01754 D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D REIFOR_02399 putative D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing K18930 dld; D-lactate dehydrogenase
D REIFOR_01256 glyoxalase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D REIFOR_02465 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D REIFOR_01539 hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D REIFOR_00333 Zn-dependent hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D REIFOR_02446 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein subunit K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D REIFOR_02844 malate dehydrogenase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D REIFOR_00981 oxaloacetate decarboxylase alpha chain K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D REIFOR_00982 oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D REIFOR_00980 oxaloacetate decarboxylase gamma chain K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D REIFOR_01090 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D REIFOR_02583 fumarate hydratase class I, aerobic K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D REIFOR_01874 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D REIFOR_00524 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D REIFOR_01341 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D REIFOR_01755 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D REIFOR_01502 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D REIFOR_03318 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rfo00630]
D REIFOR_01757 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D REIFOR_03205 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D REIFOR_01341 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D REIFOR_01755 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D REIFOR_01559 citrate synthase (si) K01647 CS; citrate synthase [EC:2.3.3.1]
D REIFOR_02100 bifunctional aconitate hydratase 2 / 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D REIFOR_01502 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D REIFOR_02446 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein subunit K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D REIFOR_01355 glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D REIFOR_00424 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D REIFOR_00689 haloacid dehalogenase-like hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D REIFOR_02750 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D REIFOR_00885 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_00605 glutamine synthetase family protein, putative glutamate-putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_00607 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_02309 glnN; glutamine synthetase type III, GlnN K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_00396 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D REIFOR_02106 glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D REIFOR_02104 glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D REIFOR_01566 dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_01880 dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_02105 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D REIFOR_01146 D-glycerate 3-kinase K15918 GLYK; D-glycerate 3-kinase [EC:2.7.1.31]
D REIFOR_01311 tartrate dehydrogenase / tartrate decarboxylase / D-malic enzyme K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D REIFOR_02276 4-hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxyphosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D REIFOR_02627 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D REIFOR_00281 amiF; formamidase AmiF K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
C 00640 Propanoate metabolism [PATH:rfo00640]
D REIFOR_03205 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D REIFOR_02857 prpE; propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D REIFOR_01380 acetate kinase K00932 tdcD; propionate kinase [EC:2.7.2.15]
D REIFOR_01379 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D REIFOR_01566 dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_01880 dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_00828 pyruvate formate-lyase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D REIFOR_02447 zinc-containing alcohol dehydrogenase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D REIFOR_01555 enoyl-CoA hydratase / delta-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D REIFOR_00951 acetyl-coenzyme A carboxyl transferase alpha chain K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D REIFOR_02692 biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D REIFOR_02693 biotin carboxylase of acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D REIFOR_01987 acetyl-coenzyme A carboxyl transferase beta chain K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D REIFOR_00601 omega-amino acid--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D REIFOR_01567 succinyl-CoA ligase [ADP-forming] beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D REIFOR_01568 succinyl-CoA ligase [ADP-forming] alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D REIFOR_03280 methylmalonate-semialdehyde dehydrogenase (inositol) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D REIFOR_02262 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D REIFOR_02261 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D REIFOR_02100 bifunctional aconitate hydratase 2 / 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D REIFOR_02263 methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
D REIFOR_01784 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D REIFOR_03033 iron-containing alcohol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
C 00650 Butanoate metabolism [PATH:rfo00650]
D REIFOR_01502 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D REIFOR_03105 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D REIFOR_01555 enoyl-CoA hydratase / delta-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D REIFOR_01581 trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D REIFOR_03045 bifunctional alcohol dehydrogenase / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D REIFOR_00982 oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D REIFOR_01311 tartrate dehydrogenase / tartrate decarboxylase / D-malic enzyme K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D REIFOR_01562 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D REIFOR_01563 succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D REIFOR_01560 succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D REIFOR_01561 succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D REIFOR_00625 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D REIFOR_01882 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D REIFOR_00828 pyruvate formate-lyase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D REIFOR_01138 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D REIFOR_03114 acetoacetyl-CoA synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D REIFOR_02737 alcohol dehydrogenase K18382 adh1; NAD+-dependent secondary alcohol dehydrogenase Adh1 [EC:1.1.1.-]
D REIFOR_00429 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D REIFOR_00430 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D REIFOR_01888 shikimate 5-dehydrogenase K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
C 00660 C5-Branched dibasic acid metabolism [PATH:rfo00660]
D REIFOR_00429 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D REIFOR_00430 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D REIFOR_01567 succinyl-CoA ligase [ADP-forming] beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D REIFOR_01568 succinyl-CoA ligase [ADP-forming] alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D REIFOR_00529 putative siderophore biosynthesis protein K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D REIFOR_01994 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D REIFOR_02521 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D REIFOR_01993 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D REIFOR_02522 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D REIFOR_01992 3-isopropylmalate dehydrogenase, monomeric form K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:rfo00562]
D REIFOR_02067 suhB; extragenic suppressor protein SuhB K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D REIFOR_03270 iolG1; myo-inositol 2-dehydrogenase 1 / glycoside hydrolase family K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D REIFOR_00063 oxidoreductase, NAD(P)-dependent / glycoside hydrolase family K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D REIFOR_02760 iolE; inosose dehydratase K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D REIFOR_00595 iolE; inosose dehydratase K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D REIFOR_03267 iolE; inosose dehydratase K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D REIFOR_03278 xylose isomerase K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D REIFOR_03265 epi-inositol hydrolase / 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D REIFOR_03263 iolB; myo-inositol catabolism IolB protein K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D REIFOR_03276 iolB; 5-deoxy-glucuronate isomerase / myo-inositol catabolism protein IolB K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D REIFOR_03264 5-keto-2-deoxygluconokinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D REIFOR_03277 5-keto-2-deoxygluconokinase / myo inositol catabolism protein K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D REIFOR_03280 methylmalonate-semialdehyde dehydrogenase (inositol) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D REIFOR_00476 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:rfo00190]
D REIFOR_00799 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D REIFOR_01562 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D REIFOR_01563 succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D REIFOR_01560 succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D REIFOR_01561 succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D REIFOR_03149 ubiquinol-cytochrome C reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D REIFOR_03148 ubiquinol--cytochrome c reductase, cytochrome B subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D REIFOR_03147 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D REIFOR_00025 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D REIFOR_00020 cytochrome c oxidase polypeptide III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D REIFOR_00018 cytochrome c oxidase polypeptide I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D REIFOR_00017 cytochrome c oxidase polypeptide II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D REIFOR_00019 cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D REIFOR_00024 heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA K02259 COX15; heme a synthase [EC:1.17.99.9]
D REIFOR_01015 ccoN; cytochrome c oxidase subunit CcoN K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D REIFOR_01014 ccoO; cytochrome c oxidase subunit CcoO K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D REIFOR_01013 ccoQ; cytochrome c oxidase subunit CcoQ K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D REIFOR_01012 ccoP; cytochrome c oxidase subunit CcoP K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D REIFOR_00203 ATP synthase alpha chain K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D REIFOR_00205 ATP synthase beta chain K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D REIFOR_00204 ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D REIFOR_00202 ATP synthase delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D REIFOR_00206 ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D REIFOR_00199 ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D REIFOR_00201 ATP synthase B chain K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D REIFOR_00200 ATP synthase C chain K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D REIFOR_02689 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D REIFOR_00231 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:rfo00710]
D REIFOR_03213 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D REIFOR_02042 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D REIFOR_01277 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D REIFOR_02259 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D REIFOR_03212 fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D REIFOR_03262 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D REIFOR_00207 fructose-1,6-bisphosphatase, type I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D REIFOR_00052 fructose-1,6-bisphosphatase, GlpX type K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D REIFOR_00073 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D REIFOR_03186 ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D REIFOR_00476 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D REIFOR_03003 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D REIFOR_01386 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D REIFOR_00793 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D REIFOR_01874 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D REIFOR_00524 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D REIFOR_02844 malate dehydrogenase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
C 00720 Other carbon fixation pathways [PATH:rfo00720]
D REIFOR_01874 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D REIFOR_02583 fumarate hydratase class I, aerobic K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D REIFOR_01562 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D REIFOR_01563 succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D REIFOR_01560 succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D REIFOR_01561 succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D REIFOR_01568 succinyl-CoA ligase [ADP-forming] alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D REIFOR_01567 succinyl-CoA ligase [ADP-forming] beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D REIFOR_01502 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D REIFOR_01583 monomeric isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D REIFOR_02100 bifunctional aconitate hydratase 2 / 2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D REIFOR_00951 acetyl-coenzyme A carboxyl transferase alpha chain K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D REIFOR_02692 biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D REIFOR_02693 biotin carboxylase of acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D REIFOR_01987 acetyl-coenzyme A carboxyl transferase beta chain K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D REIFOR_01674 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D REIFOR_00059 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D REIFOR_01379 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D REIFOR_03205 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:rfo00680]
D REIFOR_00396 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D REIFOR_01355 glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D REIFOR_00955 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D REIFOR_01874 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D REIFOR_03212 fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D REIFOR_03262 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D REIFOR_00207 fructose-1,6-bisphosphatase, type I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D REIFOR_00052 fructose-1,6-bisphosphatase, GlpX type K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D REIFOR_00829 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D REIFOR_02451 glutamate synthase [NADPH] large chain K22083 mgsC; methylamine---glutamate N-methyltransferase subunit C [EC:2.1.1.21]
D REIFOR_01379 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D REIFOR_03205 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D REIFOR_00889 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D REIFOR_00924 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D REIFOR_00224 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D REIFOR_02476 D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D REIFOR_00925 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D REIFOR_00870 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D REIFOR_01700 phosphoserine phosphatase K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
C 00910 Nitrogen metabolism [PATH:rfo00910]
D REIFOR_00281 amiF; formamidase AmiF K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
D REIFOR_02888 nitrate ABC transporter, nitrate-binding protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D REIFOR_02889 nitrate ABC transporter, permease protein K15577 nrtB; nitrate/nitrite transport system permease protein
D REIFOR_02890 nitrate ABC transporter, ATP-binding protein K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D REIFOR_02252 napA; periplasmic nitrate reductase, large subunit NapA K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D REIFOR_02251 napB; periplasmic nitrate reductase cytochrome c550-type subunit NapB K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D REIFOR_02240 assimilatory nitrate reductase large subunit K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-]
D REIFOR_02237 nitrite reductase [NAD(P)H] large subunit K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4]
D REIFOR_02238 nitrite reductase [NAD(P)H] large subunit K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D REIFOR_02239 nitrite reductase [NAD(P)H] small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D REIFOR_01684 NAD-specific glutamate dehydrogenase, large form K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D REIFOR_00885 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_00605 glutamine synthetase family protein, putative glutamate-putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_00607 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_02309 glnN; glutamine synthetase type III, GlnN K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_00306 glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D REIFOR_00497 glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D REIFOR_00307 glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D REIFOR_00498 glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D REIFOR_02260 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:rfo00920]
D REIFOR_02376 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D REIFOR_02375 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D REIFOR_03314 Ap4A phosphorylase II K00988 APA1_2; sulfate adenylyltransferase (ADP) / ATP adenylyltransferase [EC:2.7.7.5 2.7.7.53]
D REIFOR_03195 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D REIFOR_01701 phosphoadenylyl-sulfate reductase [thioredoxin] / Adenylyl-sulfate reductase (thioredoxin) K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D REIFOR_02321 soxA; sulfur oxidation protein SoxA K17222 soxA; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D REIFOR_02318 soxX; sulfur oxidation protein SoxX K17223 soxX; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D REIFOR_02319 soxY; sulfur oxidation protein SoxY K17226 soxY; sulfur-oxidizing protein SoxY
D REIFOR_02320 soxZ; sulfur oxidation protein SoxZ K17227 soxZ; sulfur-oxidizing protein SoxZ
D REIFOR_02323 soxB; sulfur oxidation protein SoxB K17224 soxB; S-sulfosulfanyl-L-cysteine sulfohydrolase [EC:3.1.6.20]
D REIFOR_02316 soxC; sulfur oxidation molybdopterin C protein SoxC K17225 soxC; sulfane dehydrogenase subunit SoxC
D REIFOR_02317 soxD; sulfite dehydrogenase cytochrome subunit SoxD K22622 soxD; S-disulfanyl-L-cysteine oxidoreductase SoxD [EC:1.8.2.6]
D REIFOR_01781 putative NADPH-dependent reductase flavoprotein component K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D REIFOR_01687 sulfite reductase [NADPH] hemoprotein beta-component K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D REIFOR_01259 NAD(FAD)-dependent dehydrogenase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D REIFOR_00098 Zn-dependent hydrolase K17725 ETHE1; sulfur dioxygenase [EC:1.13.11.18]
D REIFOR_01077 thiosulfate sulfurtransferase, rhodanese K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D REIFOR_02065 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D REIFOR_01352 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D REIFOR_00308 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D REIFOR_00322 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D REIFOR_00806 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D REIFOR_01504 long-chain-fatty-acid--CoA ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44]
D REIFOR_00879 acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:rfo00061]
D REIFOR_00951 acetyl-coenzyme A carboxyl transferase alpha chain K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D REIFOR_02692 biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D REIFOR_02693 biotin carboxylase of acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D REIFOR_01987 acetyl-coenzyme A carboxyl transferase beta chain K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D REIFOR_01640 acyl carrier protein K02078 acpP; acyl carrier protein
D REIFOR_01642 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D REIFOR_01747 beta-ketoacyl synthase K18473 fabY; acetoacetyl-[acyl-carrier protein] synthase [EC:2.3.1.180]
D REIFOR_01181 3-oxoacyl-ACP synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D REIFOR_01639 3-oxoacyl-[acyl-carrier-protein] synthase, KASII K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D REIFOR_01456 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D REIFOR_01501 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D REIFOR_01641 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D REIFOR_01182 3-hydroxydecanoyl-ACP dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D REIFOR_00946 3-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D REIFOR_01581 trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D REIFOR_02079 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D REIFOR_02170 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:rfo00071]
D REIFOR_01502 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D REIFOR_01556 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D REIFOR_01555 enoyl-CoA hydratase / delta-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D REIFOR_02512 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D REIFOR_02079 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D REIFOR_02170 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D REIFOR_00121 rubredoxin-NAD(+) reductase K05297 rubB; rubredoxin---NAD+ reductase [EC:1.18.1.1]
D REIFOR_03045 bifunctional alcohol dehydrogenase / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D REIFOR_01351 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:rfo00561]
D REIFOR_01146 D-glycerate 3-kinase K15918 GLYK; D-glycerate 3-kinase [EC:2.7.1.31]
D REIFOR_01351 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D REIFOR_00637 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D REIFOR_01218 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D REIFOR_01643 plsX; phosphate:acyl-ACP acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D REIFOR_03226 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D REIFOR_01199 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D REIFOR_01713 glycosyl transferase, GT4 family K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D REIFOR_00812 alpha-galactosidase, GH4 family K07406 melA; alpha-galactosidase [EC:3.2.1.22]
D REIFOR_02177 alpha-galactosidase, GH36 family K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:rfo00564]
D REIFOR_02150 glycerol-3-phosphate dehydrogenase (NAD(P)+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D REIFOR_00653 glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D REIFOR_01218 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D REIFOR_03226 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D REIFOR_01199 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D REIFOR_03050 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D REIFOR_00940 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D REIFOR_00434 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D REIFOR_00874 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D REIFOR_01694 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D REIFOR_00577 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D REIFOR_00334 cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:rfo00600]
D REIFOR_01359 glycoside hydrolase, GH30 family K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D REIFOR_03326 beta-galactosidase, GH2 family K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D REIFOR_00812 alpha-galactosidase, GH4 family K07406 melA; alpha-galactosidase [EC:3.2.1.22]
D REIFOR_02177 alpha-galactosidase, GH36 family K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:rfo00592]
D REIFOR_01556 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:rfo01040]
D REIFOR_01759 acyl-CoA desaturase (fatty acid desaturase) K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-]
D REIFOR_01760 benzoate 1,2-dioxygenase, ferredoxin reductase component K22770 K22770; stearoyl-CoA 9-desaturase NADPH oxidoreductase
D REIFOR_00863 carbohydrate esterase, CE3 family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D REIFOR_00441 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D REIFOR_00364 acyl-CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:rfo00230]
D REIFOR_00303 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D REIFOR_02441 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D REIFOR_01371 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D REIFOR_02729 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D REIFOR_01983 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D REIFOR_02699 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D REIFOR_01752 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D REIFOR_02624 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D REIFOR_01751 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D REIFOR_00016 phosphoribosylaminoimidazole carboxylase ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D REIFOR_00015 phosphoribosylaminoimidazole carboxylase catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D REIFOR_01041 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D REIFOR_01577 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D REIFOR_02698 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D REIFOR_01110 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D REIFOR_02860 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D REIFOR_00298 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D REIFOR_00427 multi-copper polyphenol oxidoreductase, laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D REIFOR_02023 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D REIFOR_02051 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D REIFOR_00317 NTP phosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D REIFOR_02794 xanthine dehydrogenase iron-sulfur subunit / xanthine dehydrogenase, FAD binding protein subunit K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4]
D REIFOR_02793 xanthine dehydrogenase, molybdenum binding protein subunit K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4]
D REIFOR_02022 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D REIFOR_00464 guanosine 5'-monophosphate oxidoreductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D REIFOR_02788 guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D REIFOR_03244 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D REIFOR_02302 ribonucleotide reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D REIFOR_03014 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D REIFOR_01188 5'-nucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D REIFOR_03242 GTP pyrophosphokinase,ppGpp synthetase II / guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D REIFOR_00305 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D REIFOR_00232 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D REIFOR_02216 GTP pyrophosphokinase, (p)ppGpp synthetase I K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D REIFOR_02821 adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D REIFOR_02269 adenylate/guanylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D REIFOR_01786 adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D REIFOR_02863 adenylate cyclase, class I K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D REIFOR_00910 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D REIFOR_02883 decarboxylase family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D REIFOR_01873 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D REIFOR_02215 mazG; nucleoside triphosphate pyrophosphohydrolase MazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D REIFOR_00301 ser/threonine protein phosphatase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D REIFOR_03314 Ap4A phosphorylase II K00988 APA1_2; sulfate adenylyltransferase (ADP) / ATP adenylyltransferase [EC:2.7.7.5 2.7.7.53]
D REIFOR_00447 bis(5'-nucleosyl)-tetraphosphatase, symmetrical K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D REIFOR_02376 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D REIFOR_02375 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D REIFOR_02789 5-hydroxyisourate hydrolase (HIUase) K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D REIFOR_02790 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase K16840 hpxQ; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97]
D REIFOR_02791 alc; allantoinase K01466 allB; allantoinase [EC:3.5.2.5]
D REIFOR_01339 alc; allantoicase K01477 alc; allantoicase [EC:3.5.3.4]
D REIFOR_01340 ureidoglycolate hydrolase K01483 allA; ureidoglycolate lyase [EC:4.3.2.3]
D REIFOR_00713 urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D REIFOR_00712 urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D REIFOR_00711 urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D REIFOR_00288 gamma-glutamyltranspeptidase, T3 family K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126]
C 00240 Pyrimidine metabolism [PATH:rfo00240]
D REIFOR_03019 carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D REIFOR_03020 carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D REIFOR_01976 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D REIFOR_01975 pyrI; aspartate carbamoyltransferase regulatory chain PyrI K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D REIFOR_02181 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D REIFOR_01682 dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D REIFOR_00174 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D REIFOR_02709 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D REIFOR_02051 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D REIFOR_02215 mazG; nucleoside triphosphate pyrophosphohydrolase MazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D REIFOR_02293 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D REIFOR_03104 conserved hypothetical protein, DUF45 K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D REIFOR_00954 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D REIFOR_01161 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D REIFOR_03214 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D REIFOR_01110 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D REIFOR_00298 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D REIFOR_01209 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D REIFOR_00880 pseudouridine 5'-phosphate glycosidase K16329 psuG; pseudouridylate synthase [EC:4.2.1.70]
D REIFOR_02883 decarboxylase family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D REIFOR_02859 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D REIFOR_00691 CMP deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D REIFOR_00698 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D REIFOR_00699 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D REIFOR_02302 ribonucleotide reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D REIFOR_01188 5'-nucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D REIFOR_02174 dedD; cell division protein DedD K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D REIFOR_01636 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D REIFOR_03232 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D REIFOR_02440 thymidine phosphorylase, GT3 family K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D REIFOR_01606 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D REIFOR_00191 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:rfo00250]
D REIFOR_02183 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D REIFOR_02585 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D REIFOR_02229 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D REIFOR_01203 L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D REIFOR_01059 alaT; aminotransferase AlaT K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D REIFOR_02110 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D REIFOR_00837 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D REIFOR_00514 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D REIFOR_00910 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D REIFOR_01577 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D REIFOR_00168 aspartoacylase K01437 ASPA; aspartoacylase [EC:3.5.1.15]
D REIFOR_01976 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D REIFOR_01975 pyrI; aspartate carbamoyltransferase regulatory chain PyrI K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D REIFOR_00625 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D REIFOR_01882 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D REIFOR_00306 glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D REIFOR_00497 glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D REIFOR_00307 glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D REIFOR_00498 glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D REIFOR_01684 NAD-specific glutamate dehydrogenase, large form K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D REIFOR_00780 proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D REIFOR_00885 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_00605 glutamine synthetase family protein, putative glutamate-putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_00607 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_02309 glnN; glutamine synthetase type III, GlnN K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_03019 carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D REIFOR_03020 carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D REIFOR_00272 glmS; glucosamine--fructose-6-phosphate aminotransferase (isomerizing) GlmS K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D REIFOR_01983 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:rfo00260]
D REIFOR_03239 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D REIFOR_03249 aspartokinase associated with ectoine biosynthesis K00928 lysC; aspartate kinase [EC:2.7.2.4]
D REIFOR_00974 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D REIFOR_01991 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D REIFOR_02201 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D REIFOR_02882 homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39]
D REIFOR_01700 phosphoserine phosphatase K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
D REIFOR_02200 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D REIFOR_02915 L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D REIFOR_00396 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D REIFOR_01355 glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D REIFOR_02446 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein subunit K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D REIFOR_00889 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D REIFOR_01146 D-glycerate 3-kinase K15918 GLYK; D-glycerate 3-kinase [EC:2.7.1.31]
D REIFOR_00924 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D REIFOR_00224 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D REIFOR_02476 D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D REIFOR_00925 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D REIFOR_00870 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D REIFOR_02106 glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D REIFOR_02104 glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D REIFOR_01566 dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_01880 dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_02105 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D REIFOR_00434 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D REIFOR_02994 L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D REIFOR_03187 threonine dehydratase biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D REIFOR_01799 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D REIFOR_00131 tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D REIFOR_01911 tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D REIFOR_00130 tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D REIFOR_01912 tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D REIFOR_03247 ectB; L-2,4-diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D REIFOR_03246 ectA; L-2,4-diaminobutyric acid acetyltransferase K06718 ectA; L-2,4-diaminobutyric acid acetyltransferase [EC:2.3.1.178]
D REIFOR_03248 ectC; L-ectoine synthase K06720 ectC; L-ectoine synthase [EC:4.2.1.108]
C 00270 Cysteine and methionine metabolism [PATH:rfo00270]
D REIFOR_02065 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D REIFOR_01352 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D REIFOR_00308 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D REIFOR_02188 putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D REIFOR_01843 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D REIFOR_01262 B12-dependent methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D REIFOR_00061 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D REIFOR_01943 S-adenosylmethionine decarboxylase proenzyme, prokaryotic class 1B K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D REIFOR_00427 multi-copper polyphenol oxidoreductase, laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D REIFOR_01155 trzA; S-triazine hydrolase (N-ethylammeline chlorohydrolase) K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D REIFOR_01731 5'-methylthioadenosine phosphorylase K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44]
D REIFOR_00508 diguanylate cyclase, GAF domain protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D REIFOR_00060 S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D REIFOR_00999 1-aminocyclopropane-1-carboxylate deaminase K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7]
D REIFOR_03239 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D REIFOR_03249 aspartokinase associated with ectoine biosynthesis K00928 lysC; aspartate kinase [EC:2.7.2.4]
D REIFOR_00974 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D REIFOR_01991 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D REIFOR_02201 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D REIFOR_00322 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D REIFOR_02955 O-acetylhomoserine aminocarboxypropyltransferase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D REIFOR_03203 O-acetylhomoserine sulfhydrylase / O-succinylhomoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D REIFOR_00806 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D REIFOR_00470 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D REIFOR_00035 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D REIFOR_01949 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D REIFOR_02872 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D REIFOR_02183 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D REIFOR_02585 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D REIFOR_01077 thiosulfate sulfurtransferase, rhodanese K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D REIFOR_01799 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D REIFOR_02994 L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D REIFOR_02218 cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D REIFOR_00924 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D REIFOR_00224 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D REIFOR_02476 D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D REIFOR_00925 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:rfo00280]
D REIFOR_00470 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D REIFOR_01566 dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_01880 dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_01555 enoyl-CoA hydratase / delta-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D REIFOR_01556 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D REIFOR_01350 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D REIFOR_01056 2-hydroxy-3-oxopropionate reductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D REIFOR_03280 methylmalonate-semialdehyde dehydrogenase (inositol) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D REIFOR_01351 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D REIFOR_00601 omega-amino acid--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D REIFOR_03114 acetoacetyl-CoA synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D REIFOR_01502 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D REIFOR_01138 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rfo00290]
D REIFOR_03187 threonine dehydratase biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D REIFOR_01994 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D REIFOR_02521 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D REIFOR_01993 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D REIFOR_02522 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D REIFOR_01992 3-isopropylmalate dehydrogenase, monomeric form K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D REIFOR_00429 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D REIFOR_00430 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D REIFOR_00431 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D REIFOR_01838 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D REIFOR_02717 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D REIFOR_00470 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D REIFOR_01059 alaT; aminotransferase AlaT K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D REIFOR_03318 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:rfo00300]
D REIFOR_02201 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D REIFOR_03239 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D REIFOR_03249 aspartokinase associated with ectoine biosynthesis K00928 lysC; aspartate kinase [EC:2.7.2.4]
D REIFOR_00974 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D REIFOR_01991 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D REIFOR_01038 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D REIFOR_02892 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D REIFOR_00930 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D REIFOR_00932 N-succinyl-L,L-diaminopimelate aminotransferase alternative K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D REIFOR_01223 dapE; N-succinyl-L,L-diaminopimelate desuccinylase / peptidase family M20A K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D REIFOR_00170 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D REIFOR_00171 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D REIFOR_02676 UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D REIFOR_02675 UDP-N-acetylmuramoylalanyl-D-glutamyl 2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:rfo00310]
D REIFOR_01565 dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D REIFOR_01566 dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_01880 dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_02512 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D REIFOR_01555 enoyl-CoA hydratase / delta-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D REIFOR_01502 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D REIFOR_01799 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D REIFOR_00625 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D REIFOR_01882 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D REIFOR_01254 glucooligosaccharide oxidase / chitooligosaccharide oxidase, AA7 family K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]
D REIFOR_02513 L-carnitine dehydratase/bile acid-inducible protein F K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-]
D REIFOR_01351 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D REIFOR_01840 gamma-butyrobetaine,2-oxoglutarate dioxygenase K00471 BBOX1; gamma-butyrobetaine dioxygenase [EC:1.14.11.1]
C 00220 Arginine biosynthesis [PATH:rfo00220]
D REIFOR_01062 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D REIFOR_00837 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D REIFOR_00514 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D REIFOR_00286 allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54]
D REIFOR_00713 urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D REIFOR_00712 urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D REIFOR_00711 urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D REIFOR_00885 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_00605 glutamine synthetase family protein, putative glutamate-putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_00607 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_02309 glnN; glutamine synthetase type III, GlnN K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_03019 carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D REIFOR_03020 carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D REIFOR_01684 NAD-specific glutamate dehydrogenase, large form K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D REIFOR_02183 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D REIFOR_02585 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D REIFOR_01059 alaT; aminotransferase AlaT K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D REIFOR_02707 argA; N-acetylglutamate synthase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D REIFOR_02662 glutamate N-acetyltransferase / N-acetylglutamate synthase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D REIFOR_03235 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D REIFOR_02035 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D REIFOR_00058 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
C 00330 Arginine and proline metabolism [PATH:rfo00330]
D REIFOR_00382 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D REIFOR_00604 speB; agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D REIFOR_00220 N-carbamoylputrescine amidase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D REIFOR_01943 S-adenosylmethionine decarboxylase proenzyme, prokaryotic class 1B K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D REIFOR_01775 nspC; carboxynorspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96]
D REIFOR_01351 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D REIFOR_00600 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase K12254 kauB; 4-guanidinobutyraldehyde dehydrogenase / NAD-dependent aldehyde dehydrogenase [EC:1.2.1.54 1.2.1.-]
D REIFOR_03055 arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D REIFOR_03056 arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D REIFOR_03058 succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D REIFOR_03054 succinylornithine transaminase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D REIFOR_03057 succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D REIFOR_02977 succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96]
D REIFOR_00602 gamma-glutamyl-putrescine oxidase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D REIFOR_00611 gamma-glutamyl-putrescine oxidase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D REIFOR_00324 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D REIFOR_00780 proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D REIFOR_02415 glutamate 5-kinase / RNA-binding protein C-terminal domain protein PUA K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D REIFOR_02644 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D REIFOR_00027 proline iminopeptidase, S33 family / carbohydrate esterase, CE1 family K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D REIFOR_02183 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D REIFOR_02585 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:rfo00340]
D REIFOR_02381 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D REIFOR_00909 tRNA synthetase, class II (G, H, P and S) K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D REIFOR_00086 phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D REIFOR_02587 phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D REIFOR_00831 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D REIFOR_00832 imidazole glycerol phosphate synthase amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D REIFOR_00830 imidazole glycerol phosphate synthase cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D REIFOR_00833 imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D REIFOR_02379 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D REIFOR_02380 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D REIFOR_01351 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D REIFOR_00168 aspartoacylase K01437 ASPA; aspartoacylase [EC:3.5.1.15]
D REIFOR_00628 methyltransferase domain protein K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44]
C 00350 Tyrosine metabolism [PATH:rfo00350]
D REIFOR_02183 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D REIFOR_02585 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D REIFOR_02379 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D REIFOR_02504 pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D REIFOR_03045 bifunctional alcohol dehydrogenase / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D REIFOR_00532 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase / glycoside hydrolase family K10219 ligC; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase [EC:1.1.1.312]
D REIFOR_00625 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D REIFOR_01882 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:rfo00360]
D REIFOR_02039 phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D REIFOR_02504 pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D REIFOR_03105 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D REIFOR_02183 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D REIFOR_02585 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D REIFOR_02379 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D REIFOR_02781 catalase, peroxidase, AA2 family K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D REIFOR_02913 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00380 Tryptophan metabolism [PATH:rfo00380]
D REIFOR_01321 aminotransferase, class V K01556 KYNU; kynureninase [EC:3.7.1.3]
D REIFOR_01565 dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D REIFOR_01566 dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_01880 dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_02512 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D REIFOR_01555 enoyl-CoA hydratase / delta-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D REIFOR_01502 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D REIFOR_02504 pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D REIFOR_01351 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D REIFOR_02781 catalase, peroxidase, AA2 family K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rfo00400]
D REIFOR_01227 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D REIFOR_01705 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D REIFOR_00495 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D REIFOR_02691 3-dehydroquinate dehydratase II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D REIFOR_00091 shikimate 5-dehydrogenase I alpha K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D REIFOR_00494 shikimate kinase I K00891 aroK; shikimate kinase [EC:2.7.1.71]
D REIFOR_02688 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D REIFOR_02144 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D REIFOR_00398 anthranilate synthase, aminase component K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D REIFOR_00397 anthranilate synthase, amidotransferase component K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D REIFOR_00401 trpGD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D REIFOR_01988 N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D REIFOR_01910 N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D REIFOR_00402 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D REIFOR_01922 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D REIFOR_00131 tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D REIFOR_01911 tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D REIFOR_00130 tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D REIFOR_01912 tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D REIFOR_01159 pheA; bifunctional chorismate mutase I / prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D REIFOR_01160 prephenate and/or arogenate dehydrogenase (unknown specificity) K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12]
D REIFOR_02183 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D REIFOR_02585 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D REIFOR_02379 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D REIFOR_02039 phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:rfo00410]
D REIFOR_02605 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D REIFOR_01351 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D REIFOR_02604 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D REIFOR_00601 omega-amino acid--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D REIFOR_01555 enoyl-CoA hydratase / delta-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D REIFOR_03280 methylmalonate-semialdehyde dehydrogenase (inositol) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:rfo00430]
D REIFOR_02110 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D REIFOR_01684 NAD-specific glutamate dehydrogenase, large form K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D REIFOR_01379 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
C 00440 Phosphonate and phosphinate metabolism [PATH:rfo00440]
D REIFOR_00005 phosphinothricin N-acetyltransferase K03823 pat; phosphinothricin acetyltransferase [EC:2.3.1.183]
D REIFOR_00563 phnI; phosphonate metabolism protein PhnI K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37]
D REIFOR_00561 phnG; alkylphosphonate utilization protein PhnG K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37]
D REIFOR_00562 phnH; phosphonate metabolism protein PhnH K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37]
D REIFOR_00566 phnL; phosphonate transport ATP-binding protein PhnL K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37]
D REIFOR_00567 phnM; phosphonate metabolism protein PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63]
D REIFOR_00564 phnJ; phosphonate metabolism PhnJ K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1]
D REIFOR_00569 carbon-phosphorus lyase complex accessory protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:rfo00450]
D REIFOR_02188 putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D REIFOR_01843 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D REIFOR_01262 B12-dependent methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D REIFOR_02055 sufS; cysteine desulfurase SufS K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D REIFOR_02651 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D REIFOR_02376 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D REIFOR_02375 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D REIFOR_03296 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D REIFOR_01434 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:rfo00460]
D REIFOR_03254 beta-glucosidase, GH1 family K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D REIFOR_01203 L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D REIFOR_00396 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D REIFOR_00281 amiF; formamidase AmiF K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
C 00470 D-Amino acid metabolism [PATH:rfo00470]
D REIFOR_01089 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D REIFOR_02669 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D REIFOR_01799 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D REIFOR_02109 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D REIFOR_02673 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D REIFOR_00170 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D REIFOR_00171 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D REIFOR_00743 ketoglutarate semialdehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
C 00480 Glutathione metabolism [PATH:rfo00480]
D REIFOR_00632 chaC; cation transport protein ChaC K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7]
D REIFOR_00181 lamB; lactam utilization protein LamB K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D REIFOR_00035 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D REIFOR_01949 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D REIFOR_02872 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D REIFOR_01195 leucyl aminopeptidase, M17 family K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D REIFOR_02356 cytosol aminopeptidase, M17 family K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D REIFOR_01270 aminopeptidase N, M1 family K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D REIFOR_00688 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D REIFOR_03323 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D REIFOR_01616 glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D REIFOR_01583 monomeric isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D REIFOR_02500 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D REIFOR_02280 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D REIFOR_00007 peroxiredoxin K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:rfo00511]
D REIFOR_03326 beta-galactosidase, GH2 family K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D REIFOR_01359 glycoside hydrolase, GH30 family K01201 GBA; glucosylceramidase [EC:3.2.1.45]
C 00540 Lipopolysaccharide biosynthesis [PATH:rfo00540]
D REIFOR_00947 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D REIFOR_02665 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, CE11 family K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D REIFOR_00945 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D REIFOR_01676 UDP-2,3-diacylglucosamine hydrolase, GT40 family K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D REIFOR_00948 lipid-A-disaccharide synthase, GT19 family K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D REIFOR_01652 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D REIFOR_02386 D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D REIFOR_01661 2-keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D REIFOR_01662 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D REIFOR_01651 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D REIFOR_00315 3-deoxy-D-manno-octulosonic-acid transferase, GT30 family K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D REIFOR_00385 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D REIFOR_03316 lipid A 3-O-deacylase-like protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D REIFOR_02685 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D REIFOR_01487 O-antigen polymerase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rfo00541]
D REIFOR_02285 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D REIFOR_02567 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D REIFOR_01446 UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D REIFOR_01443 dTDP-glucose 4,6-dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D REIFOR_00776 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D REIFOR_00775 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D REIFOR_00777 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D REIFOR_00778 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D REIFOR_02420 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D REIFOR_02853 2-polyprenylphenol hydroxylase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D REIFOR_01492 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D REIFOR_00271 glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D REIFOR_01449 UDP-N-acetylglucosamine 4,6-dehydratase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D REIFOR_01453 surface polysaccharide biosynthesis protein / glycosyltransferase, GT28 family K15897 pseG; UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase [EC:3.6.1.57]
D REIFOR_01495 UDP-N-acetylglucosamine 4,6-dehydratase K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D REIFOR_00241 UDP-glucose dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
C 00550 Peptidoglycan biosynthesis [PATH:rfo00550]
D REIFOR_02382 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D REIFOR_01650 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D REIFOR_02670 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D REIFOR_02673 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D REIFOR_02676 UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D REIFOR_02669 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D REIFOR_02675 UDP-N-acetylmuramoylalanyl-D-glutamyl 2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D REIFOR_00939 UDP pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D REIFOR_01215 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D REIFOR_02674 phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D REIFOR_02671 UDP-N-acetylglucosamine N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D REIFOR_00488 penicillin-binding protein 1A, GT51 family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D REIFOR_00884 penicillin-binding protein 1B, GT51 family K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D REIFOR_02640 penicillin-binding protein 2 (PBP-2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D REIFOR_02677 ftsI; cell division protein FtsI (peptidoglycan synthetase) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D REIFOR_02636 D-alanyl-D-alanine carboxypeptidase, S11 family K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D REIFOR_01226 peptidase, M15B family K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 00552 Teichoic acid biosynthesis [PATH:rfo00552]
D REIFOR_01215 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D REIFOR_02931 WecB/TagA/CpsF family glycosyltransferase, GT26 family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D REIFOR_01713 glycosyl transferase, GT4 family K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D REIFOR_01495 UDP-N-acetylglucosamine 4,6-dehydratase K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:rfo00543]
D REIFOR_02065 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D REIFOR_01352 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D REIFOR_02930 undecaprenyl-phosphate galactosephosphotransferase, GT26 family K16566 exoY; exopolysaccharide production protein ExoY
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:rfo00730]
D REIFOR_02059 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D REIFOR_00293 thiO; glycine oxidase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19]
D REIFOR_02813 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D REIFOR_00576 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D REIFOR_02620 rsgA; GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D REIFOR_02364 putative choline kinase involved in LPS biosynthesis K07251 thiK; thiamine kinase [EC:2.7.1.89]
D REIFOR_01873 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:rfo00740]
D REIFOR_03342 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D REIFOR_02989 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D REIFOR_02990 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D REIFOR_02988 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D REIFOR_02402 riboflavin synthase eubacterial/eukaryotic K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D REIFOR_00409 riboflavin kinase / FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D REIFOR_03067 oxygen-insensitive NADPH nitroreductase K19285 nfrA1; FMN reductase (NADPH) [EC:1.5.1.38]
D REIFOR_00303 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D REIFOR_00442 3-polyprenyl-4-hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:rfo00750]
D REIFOR_03298 pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D REIFOR_01058 pdxB; erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D REIFOR_00925 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D REIFOR_00449 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D REIFOR_03324 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D REIFOR_02200 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:rfo00760]
D REIFOR_02229 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D REIFOR_01033 quinolinate synthetase K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D REIFOR_02654 quinolinate phosphoribosyltransferase (decarboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D REIFOR_02860 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D REIFOR_01110 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D REIFOR_02643 nicotinic acid mononucleotide adenyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D REIFOR_02215 mazG; nucleoside triphosphate pyrophosphohydrolase MazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D REIFOR_01003 NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D REIFOR_00423 NAD synthetase / glutamine amidotransferase chain of NAD synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D REIFOR_00970 cinA; competence/damaged-inducible protein CinA-like protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D REIFOR_01267 inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D REIFOR_01720 soluble pyridine nucleotide transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D REIFOR_01326 pntA; NAD(P) transhydrogenase alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D REIFOR_01325 pntB; NAD(P) transhydrogenase, beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D REIFOR_02517 entB; isochorismatase family protein K13995 nicF; maleamate amidohydrolase [EC:3.5.1.107]
D REIFOR_00625 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D REIFOR_01882 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:rfo00770]
D REIFOR_00429 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D REIFOR_00430 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D REIFOR_00431 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D REIFOR_01838 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D REIFOR_02717 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D REIFOR_02603 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D REIFOR_01937 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D REIFOR_02604 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D REIFOR_03138 transcriptional activator, putative, Baf family protein K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D REIFOR_03231 phosphopantothenoylcysteine decarboxylase / phosphopantothenoylcysteine synthetase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D REIFOR_02215 mazG; nucleoside triphosphate pyrophosphohydrolase MazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D REIFOR_00462 phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D REIFOR_02660 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D REIFOR_02220 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D REIFOR_00501 acyl carrier protein phosphodiesterase K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D REIFOR_00470 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D REIFOR_02605 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D REIFOR_01351 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:rfo00780]
D REIFOR_03025 bioC; biotin synthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D REIFOR_01181 3-oxoacyl-ACP synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D REIFOR_01639 3-oxoacyl-[acyl-carrier-protein] synthase, KASII K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D REIFOR_01456 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D REIFOR_01501 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D REIFOR_01641 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D REIFOR_00946 3-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D REIFOR_03026 alpha/beta hydrolase family protein K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D REIFOR_03027 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D REIFOR_01190 bioA; adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D REIFOR_03024 dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D REIFOR_03028 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D REIFOR_03139 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:rfo00785]
D REIFOR_02634 octanoate-[acyl-carrier-protein]-protein N-octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D REIFOR_00548 radical SAM family protein K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D REIFOR_01566 dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_01880 dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_02283 pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D REIFOR_01831 pyruvate dehydrogenase E1 component alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D REIFOR_01830 pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D REIFOR_02284 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D REIFOR_01564 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D REIFOR_01565 dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D REIFOR_02106 glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D REIFOR_02104 glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D REIFOR_02105 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:rfo00790]
D REIFOR_02907 GTP cyclohydrolase I, type 1 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D REIFOR_00684 nudB; dihydroneopterin triphosphate pyrophosphohydrolase type 2 (NudB) K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D REIFOR_00861 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D REIFOR_00862 2-amino-4-hydroxy 6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D REIFOR_02602 2-amino-4-hydroxy 6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D REIFOR_00474 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D REIFOR_00167 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D REIFOR_01986 folC; FolC bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D REIFOR_03342 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D REIFOR_02989 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D REIFOR_01699 para-aminobenzoate synthase, aminase component K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D REIFOR_01638 4-amino-4-deoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D REIFOR_02906 folX; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase K07589 folX; D-erythro-7,8-dihydroneopterin triphosphate epimerase [EC:5.1.99.7]
D REIFOR_02905 short chain dehydrogenase/reductase family protein K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3]
D REIFOR_02040 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D REIFOR_02749 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D REIFOR_02039 phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D REIFOR_02098 organic radical-activating protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D REIFOR_01030 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D REIFOR_02270 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D REIFOR_01096 moaA; molybdenum cofactor biosynthesis protein MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D REIFOR_01099 moaC; molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D REIFOR_01101 moaE; molybdenum cofactor biosynthesis protein MoaE, molybdopterin converting factor subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D REIFOR_01098 moaB; molybdenum cofactor biosynthesis protein MoaB K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D REIFOR_02258 moeB; molybdopterin biosynthesis protein MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D REIFOR_01097 mobA; molybdopterin-guanine dinucleotide biosynthesis protein MobA K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:rfo00670]
D REIFOR_00167 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D REIFOR_02905 short chain dehydrogenase/reductase family protein K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3]
D REIFOR_01674 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D REIFOR_00396 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D REIFOR_01752 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D REIFOR_02698 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D REIFOR_03305 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D REIFOR_02104 glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D REIFOR_01262 B12-dependent methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D REIFOR_00191 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D REIFOR_02627 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D REIFOR_00059 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D REIFOR_00104 ssrS; 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:rfo00860]
D REIFOR_01978 glutamyl-tRNA synthetase / glutamyl-tRNA(Gln) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D REIFOR_01375 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D REIFOR_01452 glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D REIFOR_03174 glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D REIFOR_00082 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D REIFOR_00504 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D REIFOR_00505 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D REIFOR_00502 uroporphyrinogen-III decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D REIFOR_03310 coproporphyrinogen III oxidase, aerobic K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D REIFOR_02706 coproporphyrinogen III oxidase, oxygen-independent K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D REIFOR_01803 protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D REIFOR_03172 hemJ; protoporphyrinogen IX oxidase, HemJ K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D REIFOR_03199 ferrochelatase, protoheme ferro-lyase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D REIFOR_01595 sirohydrochlorin ferrochelatase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D REIFOR_00025 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D REIFOR_00024 heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA K02259 COX15; heme a synthase [EC:1.17.99.9]
D REIFOR_01939 ATP--cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D REIFOR_00386 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rfo00130]
D REIFOR_00379 chorismate--pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D REIFOR_00378 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D REIFOR_02852 3-polyprenyl-4-hydroxybenzoate carboxylyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D REIFOR_00442 3-polyprenyl-4-hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D REIFOR_02827 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D REIFOR_01154 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D REIFOR_02826 2-octaprenyl-6-methoxyphenol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D REIFOR_00083 ubiE; ubiquinone/menaquinone biosynthesis methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D REIFOR_02701 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D REIFOR_00523 menF; menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D REIFOR_00522 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3 cyclohexene-1-carboxylic-acid synthase MenD K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D REIFOR_00521 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene 1-carboxylate synthase MenH K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D REIFOR_00519 menC; O-succinylbenzoate synthase MenC K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D REIFOR_00518 menE; O-succinylbenzoic acid--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D REIFOR_00520 menB; naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D REIFOR_02342 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D REIFOR_01744 NAD(P)H quinone oxidoreductase / putative 1,4-benzoquinone reductase, AA6 family K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:rfo00900]
D REIFOR_02813 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D REIFOR_00941 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D REIFOR_00957 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D REIFOR_01372 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D REIFOR_00958 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D REIFOR_02048 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D REIFOR_00412 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase IspH K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D REIFOR_01502 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D REIFOR_01138 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D REIFOR_00442 3-polyprenyl-4-hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D REIFOR_02807 ispA; geranyltranstransferase (farnesyldiphosphate synthase or FPP synthase) K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D REIFOR_02418 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D REIFOR_00939 UDP pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D REIFOR_01351 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation [PATH:rfo00907]
D REIFOR_01555 enoyl-CoA hydratase / delta-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D REIFOR_01556 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D REIFOR_00073 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:rfo00523]
D REIFOR_00776 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D REIFOR_00775 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D REIFOR_00777 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D REIFOR_00778 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D REIFOR_02420 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D REIFOR_00523 menF; menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D REIFOR_00775 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:rfo00946]
D REIFOR_03254 beta-glucosidase, GH1 family K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:rfo00332]
D REIFOR_02415 glutamate 5-kinase / RNA-binding protein C-terminal domain protein PUA K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D REIFOR_02644 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:rfo00261]
D REIFOR_02376 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D REIFOR_02375 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D REIFOR_03239 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D REIFOR_03249 aspartokinase associated with ectoine biosynthesis K00928 lysC; aspartate kinase [EC:2.7.2.4]
D REIFOR_00974 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D REIFOR_01991 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D REIFOR_01038 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D REIFOR_02892 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:rfo00521]
D REIFOR_02277 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D REIFOR_02067 suhB; extragenic suppressor protein SuhB K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D REIFOR_03270 iolG1; myo-inositol 2-dehydrogenase 1 / glycoside hydrolase family K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D REIFOR_00063 oxidoreductase, NAD(P)-dependent / glycoside hydrolase family K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D REIFOR_00776 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D REIFOR_00775 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D REIFOR_00777 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D REIFOR_00778 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D REIFOR_02420 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D REIFOR_02277 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:rfo00525]
D REIFOR_00776 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D REIFOR_00775 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D REIFOR_01851 carbohydrate kinase, PfkB family K19978 acbK; acarbose 7IV-phosphotransferase [EC:2.7.1.187]
C 00401 Novobiocin biosynthesis [PATH:rfo00401]
D REIFOR_01160 prephenate and/or arogenate dehydrogenase (unknown specificity) K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12]
D REIFOR_02183 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D REIFOR_02585 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D REIFOR_02379 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D REIFOR_00398 anthranilate synthase, aminase component K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D REIFOR_00397 anthranilate synthase, amidotransferase component K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D REIFOR_01642 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D REIFOR_01456 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D REIFOR_01501 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D REIFOR_01641 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D REIFOR_01640 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:rfo00999]
D REIFOR_00061 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D REIFOR_00091 shikimate 5-dehydrogenase I alpha K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D REIFOR_03254 beta-glucosidase, GH1 family K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:rfo00362]
D REIFOR_01556 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D REIFOR_02913 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D REIFOR_00610 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D REIFOR_00545 ligA; protocatechuate 4,5-dioxygenase alpha chain K04100 ligA; protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
D REIFOR_00546 ligB; protocatechuate 4,5-dioxygenase beta chain K04101 ligB; protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8]
D REIFOR_00532 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase / glycoside hydrolase family K10219 ligC; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase [EC:1.1.1.312]
D REIFOR_00531 2-pyrone-4,6-dicarboxylic acid hydrolase K10221 ligI; 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57]
D REIFOR_00530 prpF; PrpF protein K16514 galD; 4-oxalomesaconate tautomerase [EC:5.3.2.8]
D REIFOR_00547 4-oxalomesaconate hydratase K10220 ligJ; 4-oxalmesaconate hydratase [EC:4.2.1.83]
D REIFOR_00529 putative siderophore biosynthesis protein K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D REIFOR_00554 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
D REIFOR_01555 enoyl-CoA hydratase / delta-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D REIFOR_00982 oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D REIFOR_02512 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D REIFOR_03105 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D REIFOR_01502 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:rfo00627]
D REIFOR_01017 acylphosphate phosphohydrolase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D REIFOR_02480 phenol 2-monooxygenase K03380 E1.14.13.7; phenol 2-monooxygenase (NADPH) [EC:1.14.13.7]
D REIFOR_00442 3-polyprenyl-4-hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D REIFOR_00545 ligA; protocatechuate 4,5-dioxygenase alpha chain K04100 ligA; protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
D REIFOR_00546 ligB; protocatechuate 4,5-dioxygenase beta chain K04101 ligB; protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8]
D REIFOR_00532 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase / glycoside hydrolase family K10219 ligC; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase [EC:1.1.1.312]
D REIFOR_00531 2-pyrone-4,6-dicarboxylic acid hydrolase K10221 ligI; 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57]
C 00364 Fluorobenzoate degradation [PATH:rfo00364]
D REIFOR_02775 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:rfo00625]
D REIFOR_03045 bifunctional alcohol dehydrogenase / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D REIFOR_01351 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D REIFOR_01298 alpha/beta hydrolase fold protein / carbohydrate esterase, CE1 family K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3]
D REIFOR_01383 (S)-2-haloacid dehalogenase I K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:rfo00361]
D REIFOR_02775 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D REIFOR_01383 (S)-2-haloacid dehalogenase I K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D REIFOR_01298 alpha/beta hydrolase fold protein / carbohydrate esterase, CE1 family K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3]
C 00623 Toluene degradation [PATH:rfo00623]
D REIFOR_02480 phenol 2-monooxygenase K03380 E1.14.13.7; phenol 2-monooxygenase (NADPH) [EC:1.14.13.7]
D REIFOR_02775 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
D REIFOR_02913 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
D REIFOR_01556 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
C 00791 Atrazine degradation [PATH:rfo00791]
D REIFOR_00286 allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54]
D REIFOR_00277 entB; isochorismatase family protein K23359 biuH; biuret amidohydrolase [EC:3.5.1.84]
D REIFOR_00713 urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D REIFOR_00712 urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D REIFOR_00711 urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:rfo00930]
D REIFOR_01555 enoyl-CoA hydratase / delta-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D REIFOR_02913 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00626 Naphthalene degradation [PATH:rfo00626]
D REIFOR_03045 bifunctional alcohol dehydrogenase / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
D REIFOR_00545 ligA; protocatechuate 4,5-dioxygenase alpha chain K04100 ligA; protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
D REIFOR_00546 ligB; protocatechuate 4,5-dioxygenase beta chain K04101 ligB; protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8]
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:rfo03020]
D REIFOR_03126 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D REIFOR_03125 DNA-directed RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D REIFOR_00358 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D REIFOR_03243 DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
D REIFOR_02876 DinG family ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:rfo03010]
D REIFOR_01162 SSU ribosomal protein S1p K02945 RP-S1; small subunit ribosomal protein S1
D REIFOR_00936 SSU ribosomal protein S2p (SAe) K02967 RP-S2; small subunit ribosomal protein S2
D REIFOR_00342 SSU ribosomal protein S3p (S3e) K02982 RP-S3; small subunit ribosomal protein S3
D REIFOR_00357 SSU ribosomal protein S4p (S9e) K02986 RP-S4; small subunit ribosomal protein S4
D REIFOR_00352 SSU ribosomal protein S5p (S2e) K02988 RP-S5; small subunit ribosomal protein S5
D REIFOR_01085 SSU ribosomal protein S6p K02990 RP-S6; small subunit ribosomal protein S6
D REIFOR_03123 SSU ribosomal protein S7p (S5e) K02992 RP-S7; small subunit ribosomal protein S7
D REIFOR_00349 SSU ribosomal protein S8p (S15Ae) K02994 RP-S8; small subunit ribosomal protein S8
D REIFOR_03150 SSU ribosomal protein S9p (S16e) K02996 RP-S9; small subunit ribosomal protein S9
D REIFOR_00335 SSU ribosomal protein S10p (S20e) K02946 RP-S10; small subunit ribosomal protein S10
D REIFOR_00356 SSU 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D REIFOR_03124 SSU ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D REIFOR_00355 SSU ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D REIFOR_00486 SSU ribosomal protein S15p (S13e) K02956 RP-S15; small subunit ribosomal protein S15
D REIFOR_02205 SSU ribosomal protein S16p K02959 RP-S16; small subunit ribosomal protein S16
D REIFOR_00345 SSU ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D REIFOR_01086 SSU ribosomal protein S18p K02963 RP-S18; small subunit ribosomal protein S18
D REIFOR_00340 SSU ribosomal protein S19p (S15e) K02965 RP-S19; small subunit ribosomal protein S19
D REIFOR_00407 SSU ribosomal protein S20p K02968 RP-S20; small subunit ribosomal protein S20
D REIFOR_00859 SSU ribosomal protein S21p K02970 RP-S21; small subunit ribosomal protein S21
D REIFOR_03129 LSU ribosomal protein L1p (L10Ae) K02863 RP-L1; large subunit ribosomal protein L1
D REIFOR_00339 LSU ribosomal protein L2p (L8e) K02886 RP-L2; large subunit ribosomal protein L2
D REIFOR_00336 LSU ribosomal protein L3p (L3e) K02906 RP-L3; large subunit ribosomal protein L3
D REIFOR_00337 LSU ribosomal protein L4p (L1e) K02926 RP-L4; large subunit ribosomal protein L4
D REIFOR_00348 LSU ribosomal protein L5p (L11e) K02931 RP-L5; large subunit ribosomal protein L5
D REIFOR_00350 LSU ribosomal protein L6p (L9e) K02933 RP-L6; large subunit ribosomal protein L6
D REIFOR_03127 LSU ribosomal protein L7/L12 (P1/P2) K02935 RP-L7; large subunit ribosomal protein L7/L12
D REIFOR_01087 LSU ribosomal protein L9p K02939 RP-L9; large subunit ribosomal protein L9
D REIFOR_03128 LSU ribosomal protein L10p (P0) K02864 RP-L10; large subunit ribosomal protein L10
D REIFOR_03130 LSU ribosomal protein L11p (L12e) K02867 RP-L11; large subunit ribosomal protein L11
D REIFOR_03151 LSU ribosomal protein L13p (L13Ae) K02871 RP-L13; large subunit ribosomal protein L13
D REIFOR_00346 LSU ribosomal protein L14p (L23e) K02874 RP-L14; large subunit ribosomal protein L14
D REIFOR_00353 LSU ribosomal protein L15p (L27Ae) K02876 RP-L15; large subunit ribosomal protein L15
D REIFOR_00343 LSU ribosomal protein L16p (L10e) K02878 RP-L16; large subunit ribosomal protein L16
D REIFOR_00359 LSU ribosomal protein L17p K02879 RP-L17; large subunit ribosomal protein L17
D REIFOR_00351 LSU ribosomal protein L18p (L5e) K02881 RP-L18; large subunit ribosomal protein L18
D REIFOR_02202 LSU ribosomal protein L19p K02884 RP-L19; large subunit ribosomal protein L19
D REIFOR_02568 LSU ribosomal protein L20p K02887 RP-L20; large subunit ribosomal protein L20
D REIFOR_02417 LSU ribosomal protein L21p K02888 RP-L21; large subunit ribosomal protein L21
D REIFOR_00341 LSU ribosomal protein L22p (L17e) K02890 RP-L22; large subunit ribosomal protein L22
D REIFOR_00338 LSU ribosomal protein L23p (L23Ae) K02892 RP-L23; large subunit ribosomal protein L23
D REIFOR_00347 LSU ribosomal protein L24p (L26e) K02895 RP-L24; large subunit ribosomal protein L24
D REIFOR_01370 LSU ribosomal protein L25p K02897 RP-L25; large subunit ribosomal protein L25
D REIFOR_03228 LSU ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D REIFOR_00344 LSU ribosomal protein L29p (L35e) K02904 RP-L29; large subunit ribosomal protein L29
D REIFOR_01644 LSU ribosomal protein L32p K02911 RP-L32; large subunit ribosomal protein L32
D REIFOR_03227 LSU ribosomal protein L33p K02913 RP-L33; large subunit ribosomal protein L33
D REIFOR_03349 LSU ribosomal protein L34p K02914 RP-L34; large subunit ribosomal protein L34
D REIFOR_02569 LSU ribosomal protein L35p K02916 RP-L35; large subunit ribosomal protein L35
D REIFOR_00437 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D REIFOR_00438 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D REIFOR_03165 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D REIFOR_00439 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:rfo00970]
D REIFOR_01977 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D REIFOR_02369 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D REIFOR_03142 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D REIFOR_01507 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D REIFOR_00977 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D REIFOR_00978 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D REIFOR_01671 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D REIFOR_01048 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D REIFOR_01049 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D REIFOR_00991 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D REIFOR_00992 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D REIFOR_00994 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D REIFOR_00996 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D REIFOR_01692 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D REIFOR_01079 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D REIFOR_01080 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D REIFOR_01168 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D REIFOR_02172 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D REIFOR_01169 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D REIFOR_01693 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D REIFOR_03135 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D REIFOR_01670 tRNA-His K14226 tRNA-His; tRNA His
D REIFOR_02370 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D REIFOR_03143 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D REIFOR_00393 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D REIFOR_02765 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D REIFOR_01031 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D REIFOR_01032 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D REIFOR_00479 tRNA-Met K14230 tRNA-Met; tRNA Met
D REIFOR_00580 tRNA-Met K14230 tRNA-Met; tRNA Met
D REIFOR_02578 tRNA-Met K14230 tRNA-Met; tRNA Met
D REIFOR_01081 tRNA-Met K14230 tRNA-Met; tRNA Met
D REIFOR_02730 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D REIFOR_01672 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D REIFOR_01970 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D REIFOR_02266 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D REIFOR_02267 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D REIFOR_00976 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D REIFOR_03134 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D REIFOR_00372 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D REIFOR_03133 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D REIFOR_03136 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D REIFOR_00990 tRNA-Val K14237 tRNA-Val; tRNA Val
D REIFOR_00993 tRNA-Val K14237 tRNA-Val; tRNA Val
D REIFOR_00995 tRNA-Val K14237 tRNA-Val; tRNA Val
D REIFOR_01127 tRNA-Val K14237 tRNA-Val; tRNA Val
D REIFOR_01978 glutamyl-tRNA synthetase / glutamyl-tRNA(Gln) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D REIFOR_02298 aspartyl-tRNA(Asn) amidotransferase subunit A / glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D REIFOR_02299 aspartyl-tRNA(Asn) amidotransferase subunit B / glutamyl-tRNA(Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D REIFOR_02297 aspartyl-tRNA(Asn) amidotransferase subunit C / glutamyl-tRNA(Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D REIFOR_00165 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D REIFOR_00973 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D REIFOR_01019 aspartyl-tRNA synthetase / aspartyl-tRNA(Asn) synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D REIFOR_03301 glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D REIFOR_03300 glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D REIFOR_02571 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D REIFOR_01594 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D REIFOR_02551 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D REIFOR_01434 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D REIFOR_03305 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D REIFOR_01191 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D REIFOR_00848 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D REIFOR_00410 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D REIFOR_02196 lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D REIFOR_02846 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D REIFOR_01255 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D REIFOR_02047 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D REIFOR_01974 phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D REIFOR_01973 phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D REIFOR_03167 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D REIFOR_02772 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:rfo03060]
D REIFOR_00354 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D REIFOR_03132 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D REIFOR_00477 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D REIFOR_02770 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D REIFOR_02771 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D REIFOR_02769 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D REIFOR_03347 yidC; inner membrane protein translocase component YidC, long form K03217 yidC; YidC/Oxa1 family membrane protein insertase
D REIFOR_02663 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D REIFOR_00886 secB; preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB
D REIFOR_02206 signal recognition particle, subunit Ffh SRP54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D REIFOR_02090 signal recognition particle RNA K01983 ffs; SRP RNA
D REIFOR_00458 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D REIFOR_00088 tatA; twin-arginine translocation protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D REIFOR_00089 tatB; twin-arginine translocation protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D REIFOR_00090 tatC; twin-arginine translocation protein TatC K03118 tatC; sec-independent protein translocase protein TatC
D REIFOR_02225 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D REIFOR_03320 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:rfo04122]
D REIFOR_02059 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D REIFOR_01077 thiosulfate sulfurtransferase, rhodanese K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D REIFOR_01053 tusA; tRNA 5-methylaminomethyl-2-thiouridine synthase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D REIFOR_01035 sirA; response regulator SirA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D REIFOR_01600 tusD; tRNA 5-methylaminomethyl-2-thiouridine synthase TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D REIFOR_01597 tusE; TusE/DsrC/DsvC family sulfur relay protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D REIFOR_01579 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D REIFOR_01101 moaE; molybdenum cofactor biosynthesis protein MoaE, molybdopterin converting factor subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D REIFOR_01096 moaA; molybdenum cofactor biosynthesis protein MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D REIFOR_01100 moaD; molybdenum cofactor biosynthesis protein MoaD K03636 moaD; sulfur-carrier protein
D REIFOR_01064 moeB; molybdopterin biosynthesis protein MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D REIFOR_01099 moaC; molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D REIFOR_01098 moaB; molybdenum cofactor biosynthesis protein MoaB K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
C 03050 Proteasome
C 03018 RNA degradation [PATH:rfo03018]
D REIFOR_03190 adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D REIFOR_01649 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D REIFOR_01057 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D REIFOR_00955 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D REIFOR_00487 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D REIFOR_00297 DEAD-box ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D REIFOR_00633 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D REIFOR_00911 3'-to-5' exoribonuclease RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D REIFOR_00404 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D REIFOR_02340 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D REIFOR_01857 recS; ATP-dependent DNA helicase RecS (RecQ family) K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D REIFOR_00540 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D REIFOR_00080 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D REIFOR_00117 metallo-beta-lactamase family protein, RNA-specific K12574 rnj; ribonuclease J [EC:3.1.-.-]
D REIFOR_00829 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D REIFOR_02894 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D REIFOR_01934 groEL; heat shock protein 60 family chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D REIFOR_00905 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D REIFOR_00231 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D REIFOR_02601 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:rfo03030]
D REIFOR_01709 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D REIFOR_00125 DNA polymerase III alpha subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D REIFOR_00950 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D REIFOR_02089 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D REIFOR_01635 DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D REIFOR_00849 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D REIFOR_01194 DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D REIFOR_00002 DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D REIFOR_01088 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D REIFOR_00857 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D REIFOR_02433 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D REIFOR_01856 ribonuclease HI-related protein 2 K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D REIFOR_01710 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D REIFOR_00949 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D REIFOR_02881 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D REIFOR_02002 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:rfo03410]
D REIFOR_01427 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D REIFOR_01091 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D REIFOR_02719 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D REIFOR_03299 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D REIFOR_02414 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D REIFOR_01605 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D REIFOR_00175 endonuclease/exonuclease/phosphatase family protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D REIFOR_02881 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D REIFOR_02199 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D REIFOR_02002 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:rfo03420]
D REIFOR_01729 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D REIFOR_02435 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D REIFOR_02182 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D REIFOR_01695 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D REIFOR_00217 superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D REIFOR_00236 uvrD; ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D REIFOR_02881 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D REIFOR_02002 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D REIFOR_02876 DinG family ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03430 Mismatch repair [PATH:rfo03430]
D REIFOR_00966 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D REIFOR_00902 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D REIFOR_00217 superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D REIFOR_00236 uvrD; ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D REIFOR_02580 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D REIFOR_02024 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D REIFOR_02806 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D REIFOR_02199 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D REIFOR_02433 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D REIFOR_00950 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D REIFOR_00002 DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D REIFOR_02089 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D REIFOR_00849 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D REIFOR_01635 DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D REIFOR_01709 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D REIFOR_00125 DNA polymerase III alpha subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D REIFOR_01194 DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D REIFOR_02002 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:rfo03440]
D REIFOR_02199 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D REIFOR_02433 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D REIFOR_00003 recF; DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D REIFOR_02221 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D REIFOR_02087 recR; recombination protein RecR K06187 recR; recombination protein RecR
D REIFOR_00971 recA; DNA recombination and repair protein RecA K03553 recA; recombination protein RecA
D REIFOR_02881 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D REIFOR_01022 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D REIFOR_01023 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D REIFOR_01020 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D REIFOR_02886 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D REIFOR_03077 exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D REIFOR_03076 exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D REIFOR_03078 exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D REIFOR_00950 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D REIFOR_00002 DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D REIFOR_02089 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D REIFOR_00849 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D REIFOR_01635 DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D REIFOR_01709 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D REIFOR_00125 DNA polymerase III alpha subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D REIFOR_01194 DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D REIFOR_02845 priA; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
D REIFOR_02437 secreted/periplasmic Zn-dependent peptidase, insulinase-like protein, M16A family K01408 IDE; insulysin [EC:3.4.24.56]
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:rfo02010]
D REIFOR_02888 nitrate ABC transporter, nitrate-binding protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D REIFOR_02889 nitrate ABC transporter, permease protein K15577 nrtB; nitrate/nitrite transport system permease protein
D REIFOR_02890 nitrate ABC transporter, ATP-binding protein K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D REIFOR_01102 modA; molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA K02020 modA; molybdate transport system substrate-binding protein
D REIFOR_01103 modB; molybdenum transport system permease protein ModB K02018 modB; molybdate transport system permease protein
D REIFOR_01104 cysA; sulfate and thiosulfate import ATP-binding protein CysA K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D REIFOR_00110 modF; putative molybdenum transport ATP-binding protein ModF K05776 modF; molybdate transport system ATP-binding protein
D REIFOR_00656 ferric iron ABC transporter, iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D REIFOR_00659 ferric iron ABC transporter, iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D REIFOR_01780 ferric iron ABC transporter, iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D REIFOR_00657 ferric iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D REIFOR_01779 ferric iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D REIFOR_00658 ferric iron ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D REIFOR_01778 ferric iron ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D REIFOR_02362 thiamin ABC transporter, substrate-binding protein component K02064 thiB; thiamine transport system substrate-binding protein
D REIFOR_02361 thiamin ABC transporter, transmembrane component K02063 thiP; thiamine transport system permease protein
D REIFOR_02360 thiamin ABC transporter, ATPase component K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D REIFOR_01253 spermidine / putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D REIFOR_01131 proX; L-proline glycine betaine binding protein ABC transporter protein ProX K02002 proX; glycine betaine/proline transport system substrate-binding protein
D REIFOR_01130 proW; L-proline glycine betaine ABC transport system permease protein ProW K02001 proW; glycine betaine/proline transport system permease protein
D REIFOR_01129 proV; L-proline glycine betaine ABC transport system permease protein ProV K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D REIFOR_02825 malE; maltose/maltodextrin ABC transporter, substrate-binding protein periplasmic protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D REIFOR_00228 malE; maltose/maltodextrin ABC transporter, substrate-binding protein periplasmic protein MalE K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D REIFOR_00229 malF; maltose/maltodextrin ABC transporter, permease protein MalF K10109 malF; maltose/maltodextrin transport system permease protein
D REIFOR_00230 malG; maltose/maltodextrin ABC transporter, permease protein MalG K10110 malG; maltose/maltodextrin transport system permease protein
D REIFOR_02488 N-acetyl-D-glucosamine ABC transport system, ATP-binding protein component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D REIFOR_00512 ABC-type sugar transport system, ATPase component K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D REIFOR_02274 ugpC; glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D REIFOR_02460 ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D REIFOR_02461 ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D REIFOR_02485 N-acetyl-D-glucosamine ABC transport system, sugar-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D REIFOR_02486 N-acetyl-D-glucosamine ABC transport system, permease protein 1 K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D REIFOR_02487 N-acetyl-D-glucosamine ABC transport system, permease protein 2 K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D REIFOR_03156 aglE; alpha-glucoside ABC transporter, periplasmic substrate-binding protein AglE precursor K10232 aglE; alpha-glucoside transport system substrate-binding protein
D REIFOR_03157 alpha-glucoside ABC transporter, inner membrane protein AglF K10233 aglF; alpha-glucoside transport system permease protein
D REIFOR_03158 aglG; alpha-glucoside ABC transporter, permease protein AglG K10234 aglG; alpha-glucoside transport system permease protein
D REIFOR_00786 araF; L-arabinose-binding protein periplasmic protein precursor AraF K10546 chvE; putative multiple sugar transport system substrate-binding protein
D REIFOR_00788 monosaccharide ABC transporter permease protein K10547 gguB; putative multiple sugar transport system permease protein
D REIFOR_00787 araG; L-arabinose transport ATP-binding protein AraG K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D REIFOR_02384 ABC-type transport system, auxiliary component K07323 mlaC; phospholipid transport system substrate-binding protein
D REIFOR_00759 basic outer membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D REIFOR_00075 putative nucleoside ABC transporter, substrate-binding protein component K07335 bmpA; basic membrane protein A and related proteins
D REIFOR_02798 ABC transporter, substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D REIFOR_00274 Bmp family protein K07335 bmpA; basic membrane protein A and related proteins
D REIFOR_00077 putative nucleoside ABC transporter, permease 1 component K23535 nupB; general nucleoside transport system permease protein
D REIFOR_02796 nucleoside ABC transporter, permease protein 1 K23535 nupB; general nucleoside transport system permease protein
D REIFOR_00275 rbsC; ribose ABC transport system, permease protein RbsC K23535 nupB; general nucleoside transport system permease protein
D REIFOR_00078 putative nucleoside ABC transporter, permease 2 component K23536 nupC; general nucleoside transport system permease protein
D REIFOR_02797 putative deoxyribose-specific ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein
D REIFOR_00276 rbsC; ribose ABC transport system, permease protein RbsC K23536 nupC; general nucleoside transport system permease protein
D REIFOR_00076 putative nucleoside ABC transporter, ATP-binding protein component K23537 nupA; general nucleoside transport system ATP-binding protein
D REIFOR_00278 nucleoside ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D REIFOR_02795 sugar ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D REIFOR_00509 ABC-type sugar transport system, periplasmic component K17315 gtsA; glucose/mannose transport system substrate-binding protein
D REIFOR_02484 ABC-type sugar transport system, periplasmic component K17315 gtsA; glucose/mannose transport system substrate-binding protein
D REIFOR_00510 ABC-type sugar transport system, permease component K17316 gtsB; glucose/mannose transport system permease protein
D REIFOR_00511 ABC-type sugar transport system, permease component K17317 gtsC; glucose/mannose transport system permease protein
D REIFOR_02759 inositol transport system sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D REIFOR_02762 sugar ABC transporter, substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D REIFOR_00747 ribose ABC transport system, substrate binding protein unit K10439 rbsB; ribose transport system substrate-binding protein
D REIFOR_01894 rbsB; ribose ABC transporter, periplasmic ribose-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein
D REIFOR_00391 frcB; fructose ABC transporter, substrate-binding protein component FrcB K10439 rbsB; ribose transport system substrate-binding protein
D REIFOR_00748 rbsC; ribose ABC transport system, permease protein RbsC K10440 rbsC; ribose transport system permease protein
D REIFOR_01889 rbsC; ribose ABC transport system, permease protein RbsC K10440 rbsC; ribose transport system permease protein
D REIFOR_02756 inositol transport system permease protein K10440 rbsC; ribose transport system permease protein
D REIFOR_00392 fructose ABC transport system, permease protein K10440 rbsC; ribose transport system permease protein
D REIFOR_01893 rbsA; ribose ABC transport system, ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D REIFOR_02757 putative L-rhamnose ABC transporter, ATP-binding protein component K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D REIFOR_00749 rbsA; ribose ABC transport system, ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D REIFOR_00390 frcA; fructose ABC transporter, ATP-binding protein component FrcA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D REIFOR_03273 inositol transport system sugar-binding protein K17213 K17213; inositol transport system substrate-binding protein
D REIFOR_03272 inositol transport system permease protein K17214 K17214; inositol transport system permease protein
D REIFOR_03271 inositol transport system ATP-binding protein K17215 K17215; inositol transport system ATP-binding protein
D REIFOR_00638 ugpA; glycerol-3-phosphate ABC transporter, permease protein UgpA K17321 glpV; glycerol transport system substrate-binding protein
D REIFOR_00636 ugpA; glycerol-3-phosphate ABC transporter, permease protein UgpA K17322 glpP; glycerol transport system permease protein
D REIFOR_00641 ugpA; glycerol-3-phosphate ABC transporter, permease protein UgpA K17322 glpP; glycerol transport system permease protein
D REIFOR_00635 glycerol-3-phosphate ABC transport system, permease component K17323 glpQ; glycerol transport system permease protein
D REIFOR_00640 upgE; glycerol-3-phosphate ABC transporter, permease protein UgpE K17323 glpQ; glycerol transport system permease protein
D REIFOR_00643 glycerol-3-phosphate-transporting ATPase K17324 glpS; glycerol transport system ATP-binding protein
D REIFOR_02733 ABC transporter, ATP-binding protein K17324 glpS; glycerol transport system ATP-binding protein
D REIFOR_00642 upgC; glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC K17325 glpT; glycerol transport system ATP-binding protein
D REIFOR_02732 ugpC; glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC K17325 glpT; glycerol transport system ATP-binding protein
D REIFOR_00365 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D REIFOR_00366 pstC; phosphate transport system permease protein PstC K02037 pstC; phosphate transport system permease protein
D REIFOR_00367 pstA; phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D REIFOR_00368 pstB; phosphate transport ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D REIFOR_00558 phosphonate ABC transporter, phosphate-binding protein periplasmic component K02044 phnD; phosphonate transport system substrate-binding protein
D REIFOR_00645 phosphonate ABC transporter, phosphate-binding protein periplasmic component K02044 phnD; phosphonate transport system substrate-binding protein
D REIFOR_03217 phosphonate ABC transporter phosphate-binding protein periplasmic component K02044 phnD; phosphonate transport system substrate-binding protein
D REIFOR_00559 phnE; phosphonate ABC transporter permease protein phnE K02042 phnE; phosphonate transport system permease protein
D REIFOR_00647 pnhE; phosphonate ABC transporter, permease protein phnE K02042 phnE; phosphonate transport system permease protein
D REIFOR_03219 phnE2; phosphonate ABC transporter permease protein phnE2 K02042 phnE; phosphonate transport system permease protein
D REIFOR_03220 phnE1; phosphonate ABC transporter permease protein phnE1 K02042 phnE; phosphonate transport system permease protein
D REIFOR_00557 phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D REIFOR_00646 phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D REIFOR_03218 phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D REIFOR_00842 gltI; glutamate aspartate periplasmic binding protein precursor GltI K09969 aapJ; general L-amino acid transport system substrate-binding protein
D REIFOR_00843 gltJ; glutamate aspartate transport system permease protein GltJ K09970 aapQ; general L-amino acid transport system permease protein
D REIFOR_00844 glutamate transport membrane-spanning protein K09971 aapM; general L-amino acid transport system permease protein
D REIFOR_00845 arginine ABC transporter ATP-binding protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D REIFOR_02980 lysine-arginine-ornithine-binding protein periplasmic protein precursor K10022 aotJ; arginine/ornithine transport system substrate-binding protein
D REIFOR_02978 hisM; histidine ABC transporter, permease protein HisM K10023 aotM; arginine/ornithine transport system permease protein
D REIFOR_02979 aotQ; arginine/ornithine ABC transporter, permease protein AotQ K10024 aotQ; arginine/ornithine transport system permease protein
D REIFOR_02981 aotP; arginine/ornithine ABC transporter, ATP-binding protein AotP K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1]
D REIFOR_00533 amino acid ABC transporter, substrate-binding protein K23061 lhpP; hydroxyproline transporter system substrate-binding protein
D REIFOR_00534 glnP; glutamine transport system permease protein glnP K23062 lhpM; hydroxyproline transport system permease protein
D REIFOR_00535 glnP; glutamine transport system permease protein glnP K23063 lhpN; hydroxyproline transport system permease protein
D REIFOR_00536 glnQ; glutamine transport ATP-binding protein GlnQ (TC3.A.1.3.2) K23064 lhpO; hydroxyproline transport system ATP-binding protein [EC:7.4.2.1]
D REIFOR_01382 branched-chain amino acid ABC transporter, aminoacid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D REIFOR_00581 branched-chain amino acid ABC transporter, periplasmic substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D REIFOR_01392 livH; high-affinity branched-chain amino acid transport system permease protein LivH K01997 livH; branched-chain amino acid transport system permease protein
D REIFOR_00582 branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D REIFOR_01391 livM; branched-chain amino acid transport system permease protein LivM K01998 livM; branched-chain amino acid transport system permease protein
D REIFOR_01393 livF; branched-chain amino acid transport ATP-binding protein LivF K01996 livF; branched-chain amino acid transport system ATP-binding protein
D REIFOR_00584 branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D REIFOR_00705 urtA; urea ABC transporter, substrate binding protein UrtA K11959 urtA; urea transport system substrate-binding protein
D REIFOR_00706 urtB; urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein
D REIFOR_00707 urtC; urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein
D REIFOR_00708 urtD; urea ABC transporter, ATPase protein UrtD K11962 urtD; urea transport system ATP-binding protein
D REIFOR_00709 urtE; urea ABC transporter, ATPase protein UrtE K11963 urtE; urea transport system ATP-binding protein
D REIFOR_02712 oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA K15580 oppA; oligopeptide transport system substrate-binding protein
D REIFOR_02713 oppB; oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein
D REIFOR_02714 oppC; oligopeptide transport system permease protein OppC K15582 oppC; oligopeptide transport system permease protein
D REIFOR_02715 oppD; oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D REIFOR_02716 oppF; oligopeptide transport ATP-binding protein OppF K10823 oppF; oligopeptide transport system ATP-binding protein
D REIFOR_02982 dipeptide-binding protein ABC transporter, periplasmic substrate-binding protein component K12368 dppA; dipeptide transport system substrate-binding protein
D REIFOR_02983 dppB; dipeptide transport system permease protein DppB K12369 dppB; dipeptide transport system permease protein
D REIFOR_02984 dppC; dipeptide transport system permease protein DppC K12370 dppC; dipeptide transport system permease protein
D REIFOR_02985 dppD; dipeptide transport ATP-binding protein DppD (TC3.A.1.5.2) K12371 dppD; dipeptide transport system ATP-binding protein
D REIFOR_02986 dppF; dipeptide transport ATP-binding protein DppF (TC3.A.1.5.2) K12372 dppF; dipeptide transport system ATP-binding protein
D REIFOR_01657 multidrug ABC transporter substrate-binding protein K09808 lolC_E; lipoprotein-releasing system permease protein
D REIFOR_01402 ABC transporter, permease component, involved in lipoprotein release K09808 lolC_E; lipoprotein-releasing system permease protein
D REIFOR_01656 ABC transporter, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D REIFOR_02010 ccmCE; cytochrome c-type biogenesis protein CcmD, interacts with CcmCE K02196 ccmD; heme exporter protein D
D REIFOR_02011 ccmE; cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE K02195 ccmC; heme exporter protein C
D REIFOR_02012 ccmB; ABC transporter involved in cytochrome c biogenesis, CcmB subunit K02194 ccmB; heme exporter protein B
D REIFOR_02013 ccmA; ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D REIFOR_01442 putative permease, YjgP/YjgQ family K07091 lptF; lipopolysaccharide export system permease protein
D REIFOR_01441 putative permease, YjgP/YjgQ family K11720 lptG; lipopolysaccharide export system permease protein
D REIFOR_02389 lptB; lipopolysaccharide ABC transporter, ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D REIFOR_00456 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D REIFOR_00457 ftsE; cell division protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D REIFOR_02747 efflux ABC transporter, transmembrane ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D REIFOR_03007 ABC-type multidrug transport system, ATPase and permease component K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D REIFOR_01860 ABC transporter, ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D REIFOR_03006 ABC-type multidrug transport system, ATPase and permease component K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D REIFOR_01859 ABC transporter, ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D REIFOR_02950 type I secretion system ATPase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D REIFOR_00675 toxin RTX-I translocation ATP-binding protein K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D REIFOR_00760 RTX toxin transporter, ATP-binding protein / leukotoxin translocation protein LktB / peptidase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D REIFOR_02543 RTX transport protein B, peptidase family S1C K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D REIFOR_01173 toxin secretion ABC transporter ATP-binding protein subunit/permease / peptidase, family C39 K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D REIFOR_02966 toxin secretion ABC transporter ATP-binding protein subunit/permease K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D REIFOR_01499 msbA; lipid A export ATP-binding protein/permease protein MsbA K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
C 02060 Phosphotransferase system (PTS) [PATH:rfo02060]
D REIFOR_03093 PTS fructose transporter K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D REIFOR_03094 PTS fructose transporter subunit IIA K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202]
D REIFOR_03092 PTS fructose transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D REIFOR_03096 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D REIFOR_00578 ptsP; phosphotransferase system enzyme I PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D REIFOR_03189 phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D REIFOR_02394 phosphotransferase system, phosphocarrier HPr protein K08485 ptsO; phosphocarrier protein NPr
D REIFOR_02392 PTS fructose transporter subunit IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:rfo03070]
D REIFOR_00304 type I secretion outer membrane protein, TolC precursor K12340 tolC; outer membrane protein
D REIFOR_02949 hlyD; RTX secretion protein D / HlyD family secretion protein K11003 hlyD; membrane fusion protein, hemolysin D
D REIFOR_00761 RTX secretion protein D / HlyD family secretion protein K11003 hlyD; membrane fusion protein, hemolysin D
D REIFOR_02950 type I secretion system ATPase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D REIFOR_00675 toxin RTX-I translocation ATP-binding protein K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D REIFOR_00760 RTX toxin transporter, ATP-binding protein / leukotoxin translocation protein LktB / peptidase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D REIFOR_02543 RTX transport protein B, peptidase family S1C K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D REIFOR_01876 general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D REIFOR_01877 general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D REIFOR_01625 general secretion pathway protein F K02455 gspF; general secretion pathway protein F
D REIFOR_01624 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D REIFOR_01623 general secretion pathway protein H K02457 gspH; general secretion pathway protein H
D REIFOR_01622 general secretion pathway protein I K02458 gspI; general secretion pathway protein I
D REIFOR_01621 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D REIFOR_01620 general secretion pathway protein K K02460 gspK; general secretion pathway protein K
D REIFOR_01619 general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D REIFOR_01618 general secretion pathway protein M K02462 gspM; general secretion pathway protein M
D REIFOR_01626 general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D REIFOR_02702 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D REIFOR_02770 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D REIFOR_02771 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D REIFOR_03132 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D REIFOR_00477 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D REIFOR_00354 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D REIFOR_02769 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D REIFOR_03347 yidC; inner membrane protein translocase component YidC, long form K03217 yidC; YidC/Oxa1 family membrane protein insertase
D REIFOR_02663 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D REIFOR_00458 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D REIFOR_00886 secB; preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB
D REIFOR_02206 signal recognition particle, subunit Ffh SRP54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D REIFOR_00088 tatA; twin-arginine translocation protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D REIFOR_00089 tatB; twin-arginine translocation protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D REIFOR_00090 tatC; twin-arginine translocation protein TatC K03118 tatC; sec-independent protein translocase protein TatC
D REIFOR_00134 type VI secretion system effector, Hcp family K11903 hcp; type VI secretion system secreted protein Hcp
D REIFOR_00138 conserved hypothetical membrane protein K11891 impL; type VI secretion system protein ImpL
D REIFOR_00137 type IV / VI secretion system protein, DotU family K11892 impK; type VI secretion system protein ImpK
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:rfo02020]
D REIFOR_00376 phoR; phosphate regulon sensor protein PhoR (SphS) K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D REIFOR_00377 phoB; phosphate regulon transcriptional regulatory protein PhoB (SphR) K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D REIFOR_00365 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D REIFOR_02191 phoQ; two-component system sensor histidine kinase PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D REIFOR_02192 two-component system response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP
D REIFOR_03183 cpxA; copper sensory histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D REIFOR_03182 cpxR; copper-sensing two-component system response regulator CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D REIFOR_01210 rstA; transcriptional regulatory protein RstA K07661 rstA; two-component system, OmpR family, response regulator RstA
D REIFOR_02227 serine protease precursor MucD/AlgY associated with sigma factor RpoE / peptidase, family 1C K04771 degP; serine protease Do [EC:3.4.21.107]
D REIFOR_03110 baeS; sensory histidine kinase BaeS K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D REIFOR_03109 baeR; response regulator BaeR K07664 baeR; two-component system, OmpR family, response regulator BaeR
D REIFOR_00609 flaB; flagellin protein FlaB K02406 fliC; flagellin
D REIFOR_02124 flagellin domain protein K02406 fliC; flagellin
D REIFOR_02165 RNA polymerase sigma 70 K02405 fliA; RNA polymerase sigma factor FliA
D REIFOR_02805 pomA; flagellar motor protein PomA K02556 motA; chemotaxis protein MotA
D REIFOR_02160 motA; flagellar motor rotation protein MotA K02556 motA; chemotaxis protein MotA
D REIFOR_02475 tctA; tricarboxylate transport membrane protein TctA K07793 tctA; putative tricarboxylic transport membrane protein
D REIFOR_00156 tctA; tricarboxylate transport membrane protein TctA K07793 tctA; putative tricarboxylic transport membrane protein
D REIFOR_02474 tctB; tricarboxylate transport membrane protein TctB K07794 tctB; putative tricarboxylic transport membrane protein
D REIFOR_00157 tctB; tricarboxylate transport protein TctB K07794 tctB; putative tricarboxylic transport membrane protein
D REIFOR_00158 tctC; tricarboxylate transport protein TctC K07795 tctC; putative tricarboxylic transport membrane protein
D REIFOR_02473 tctC; tricarboxylate transport protein TctC K07795 tctC; putative tricarboxylic transport membrane protein
D REIFOR_00024 heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA K02259 COX15; heme a synthase [EC:1.17.99.9]
D REIFOR_00001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D REIFOR_01226 peptidase, M15B family K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D REIFOR_00515 alginate biosynthesis protein AlgZ/FimS K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D REIFOR_00516 alginate biosynthesis regulatory protein AlgR-like protein K08083 algR; two-component system, LytTR family, response regulator AlgR
D REIFOR_02257 nitrate/nitrite response regulator protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D REIFOR_02256 nitrate/nitrite sensor protein K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D REIFOR_02219 barA; sensory histidine kinase BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D REIFOR_01696 uvrY; BarA-associated response regulator UvrY K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D REIFOR_00975 carbon storage regulator K03563 csrA; carbon storage regulator
D REIFOR_00933 PII uridylyl-transferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D REIFOR_00835 ntrB; nitrogen regulation protein NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D REIFOR_00836 ntrC; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D REIFOR_00885 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_00605 glutamine synthetase family protein, putative glutamate-putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_00607 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_02309 glnN; glutamine synthetase type III, GlnN K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_01502 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D REIFOR_02336 two-component system sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D REIFOR_03215 two-component system sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D REIFOR_02563 dctB; C4-dicarboxylate transport sensor protein DctB K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D REIFOR_02562 C4-dicarboxylate transport transcriptional regulatory protein K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D REIFOR_02335 two-component system response regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D REIFOR_03216 transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D REIFOR_00422 pilS; two-component system sensor histidine kinase PilS K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D REIFOR_00421 pilR; type IV fimbriae expression regulatory protein PilR K02667 pilR; two-component system, NtrC family, response regulator PilR
D REIFOR_02390 rpoN; RNA polymerase sigma-54 factor RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D REIFOR_02655 fimbrial protein precursor (pilin) K02650 pilA; type IV pilus assembly protein PilA
D REIFOR_02656 pilA; type IV pilin PilA K02650 pilA; type IV pilus assembly protein PilA
D REIFOR_01135 CheR-type MCP methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D REIFOR_02137 cheR; chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D REIFOR_01767 cehR; chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D REIFOR_01084 putative methyltransferase / methylesterase K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D REIFOR_00923 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D REIFOR_01768 methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D REIFOR_01773 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D REIFOR_00226 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D REIFOR_02155 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D REIFOR_02156 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW
D REIFOR_03112 cheW; positive regulator of CheA protein activity (CheW) K03408 cheW; purine-binding chemotaxis protein CheW
D REIFOR_01769 cheW; positive regulator of CheA protein activity (CheW) K03408 cheW; purine-binding chemotaxis protein CheW
D REIFOR_02162 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D REIFOR_01770 cheA; signal transduction sensor histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D REIFOR_02164 chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor component CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D REIFOR_01771 chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor component CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D REIFOR_02880 response regulator containng CheC-like domain protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D REIFOR_02161 cheB; chemotaxis response regulator protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D REIFOR_01765 cheB; chemotaxis response regulator protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D REIFOR_02138 cheW; chemotaxis protein CheW K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D REIFOR_02867 pilK; methyltransferase PilK K02661 pilK; type IV pilus assembly protein PilK
D REIFOR_02868 pilJ; type IV pilus biogenesis protein PilJ K02660 pilJ; twitching motility protein PilJ
D REIFOR_01869 methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D REIFOR_02869 pilI; type IV pili signal transduction protein PilI K02659 pilI; twitching motility protein PilI
D REIFOR_01867 chemotaxis signal transduction protein CheW-like protein K02659 pilI; twitching motility protein PilI
D REIFOR_02866 hybrid signal transduction sensor histidine kinase / response regulator K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D REIFOR_02871 pilG; twitching motility protein PilG K02657 pilG; twitching motility two-component system response regulator PilG
D REIFOR_02870 pilH; twitching motility protein PilH K02658 pilH; twitching motility two-component system response regulator PilH
D REIFOR_02630 response regulator with CheY-like receiver domain protein K02658 pilH; twitching motility two-component system response regulator PilH
D REIFOR_01866 pilH; twitching motility protein PilH K02658 pilH; twitching motility two-component system response regulator PilH
D REIFOR_02865 cheB; chemotaxis response regulator protein-glutamatemethylesterase CheB K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase)
D REIFOR_02864 hypothetical protein K06598 chpC; chemosensory pili system protein ChpC
D REIFOR_02334 siaP; TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate transporter K11688 dctP; C4-dicarboxylate-binding protein DctP
D REIFOR_02333 siaQ; TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D REIFOR_02332 siaM; TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D REIFOR_00989 dctM; TRAP-type C4-dicarboxylate transport system, large permease component DctM K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D REIFOR_00182 dctM; TRAP-type C4-dicarboxylate transport system, large permease component DctM, unknown substrate 5 K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D REIFOR_01513 fleQ; flagellar regulatory protein FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D REIFOR_01514 fleS; flagellar sensor histidine kinase FleS K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D REIFOR_01515 fleR; sigma-54 dependent transcriptional regulator / response regulator FleR K10943 flrC; two-component system, response regulator FlrC
D REIFOR_02705 cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D REIFOR_03149 ubiquinol-cytochrome C reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D REIFOR_03148 ubiquinol--cytochrome c reductase, cytochrome B subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D REIFOR_03147 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D REIFOR_01015 ccoN; cytochrome c oxidase subunit CcoN K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D REIFOR_01014 ccoO; cytochrome c oxidase subunit CcoO K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D REIFOR_01013 ccoQ; cytochrome c oxidase subunit CcoQ K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D REIFOR_01012 ccoP; cytochrome c oxidase subunit CcoP K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D REIFOR_00304 type I secretion outer membrane protein, TolC precursor K12340 tolC; outer membrane protein
D REIFOR_00244 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D REIFOR_00255 protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D REIFOR_01627 dhkJ; histidine kinase DhkJ K20973 sagS; two-component system, sensor histidine kinase SagS [EC:2.7.13.3]
D REIFOR_01524 Hpt domain protein K20976 hptB; histidine phosphotransfer protein HptB
D REIFOR_01523 cheY; chemotaxis protein CheY K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator
D REIFOR_01522 rsbV; anti-sigma F factor antagonist (spoIIAA-2), anti-sigma B factor antagonist RsbV K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor
D REIFOR_01772 SpoIIAA family protein K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor
D REIFOR_02140 glgM; negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D REIFOR_03149 ubiquinol-cytochrome C reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:rfo02024]
D REIFOR_00905 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D REIFOR_00398 anthranilate synthase, aminase component K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D REIFOR_00397 anthranilate synthase, amidotransferase component K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D REIFOR_01227 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D REIFOR_01705 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D REIFOR_01382 branched-chain amino acid ABC transporter, aminoacid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D REIFOR_00581 branched-chain amino acid ABC transporter, periplasmic substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D REIFOR_01392 livH; high-affinity branched-chain amino acid transport system permease protein LivH K01997 livH; branched-chain amino acid transport system permease protein
D REIFOR_00582 branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D REIFOR_01391 livM; branched-chain amino acid transport system permease protein LivM K01998 livM; branched-chain amino acid transport system permease protein
D REIFOR_01393 livF; branched-chain amino acid transport ATP-binding protein LivF K01996 livF; branched-chain amino acid transport system ATP-binding protein
D REIFOR_00584 branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D REIFOR_02079 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D REIFOR_02170 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D REIFOR_02705 cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D REIFOR_02566 zinc uptake regulation protein ZUR K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D REIFOR_01067 endo-beta-1,4-mannanase, CBM10 (3x), GH26 family K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D REIFOR_03342 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D REIFOR_02990 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D REIFOR_02712 oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA K15580 oppA; oligopeptide transport system substrate-binding protein
D REIFOR_02713 oppB; oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein
D REIFOR_02714 oppC; oligopeptide transport system permease protein OppC K15582 oppC; oligopeptide transport system permease protein
D REIFOR_02715 oppD; oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D REIFOR_02716 oppF; oligopeptide transport ATP-binding protein OppF K10823 oppF; oligopeptide transport system ATP-binding protein
D REIFOR_00285 dipeptide-binding protein ABC transporter, periplasmic substrate-binding protein component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D REIFOR_01360 oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D REIFOR_02426 oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D REIFOR_01361 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D REIFOR_02425 oligopeptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D REIFOR_00284 dppB; dipeptide-binding protein ABC transporter, permease protein DppB, putative hemin permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D REIFOR_00283 dppC; dipeptide-binding protein ABC transporter, permease protein DppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D REIFOR_01362 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D REIFOR_02424 oppC; oligopeptide ABC transporter, permease protein OppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D REIFOR_00282 dppD; dipeptide-binding protein ABC transporter, ATP-binding protein DppD (TC3.A.1.5.2) K02031 ddpD; peptide/nickel transport system ATP-binding protein
D REIFOR_01363 oppD; oligopeptide ABC transporter, ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D REIFOR_02423 oppD; oligopeptide ABC transporter, ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D REIFOR_03347 yidC; inner membrane protein translocase component YidC, long form K03217 yidC; YidC/Oxa1 family membrane protein insertase
D REIFOR_03132 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D REIFOR_00477 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D REIFOR_00354 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D REIFOR_02769 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D REIFOR_02663 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D REIFOR_00458 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D REIFOR_00886 secB; preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB
D REIFOR_02206 signal recognition particle, subunit Ffh SRP54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:rfo02030]
D REIFOR_00923 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D REIFOR_01768 methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D REIFOR_01773 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D REIFOR_00226 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D REIFOR_02825 malE; maltose/maltodextrin ABC transporter, substrate-binding protein periplasmic protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D REIFOR_00228 malE; maltose/maltodextrin ABC transporter, substrate-binding protein periplasmic protein MalE K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D REIFOR_02759 inositol transport system sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D REIFOR_02762 sugar ABC transporter, substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D REIFOR_00747 ribose ABC transport system, substrate binding protein unit K10439 rbsB; ribose transport system substrate-binding protein
D REIFOR_01894 rbsB; ribose ABC transporter, periplasmic ribose-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein
D REIFOR_00391 frcB; fructose ABC transporter, substrate-binding protein component FrcB K10439 rbsB; ribose transport system substrate-binding protein
D REIFOR_02982 dipeptide-binding protein ABC transporter, periplasmic substrate-binding protein component K12368 dppA; dipeptide transport system substrate-binding protein
D REIFOR_02162 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D REIFOR_01770 cheA; signal transduction sensor histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D REIFOR_02155 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D REIFOR_02156 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW
D REIFOR_03112 cheW; positive regulator of CheA protein activity (CheW) K03408 cheW; purine-binding chemotaxis protein CheW
D REIFOR_01769 cheW; positive regulator of CheA protein activity (CheW) K03408 cheW; purine-binding chemotaxis protein CheW
D REIFOR_02164 chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor component CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D REIFOR_01771 chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor component CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D REIFOR_02880 response regulator containng CheC-like domain protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D REIFOR_02163 cheZ; chemotaxis response - phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ
D REIFOR_02161 cheB; chemotaxis response regulator protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D REIFOR_01765 cheB; chemotaxis response regulator protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D REIFOR_01084 putative methyltransferase / methylesterase K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D REIFOR_02138 cheW; chemotaxis protein CheW K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D REIFOR_01766 cheD; chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D REIFOR_01135 CheR-type MCP methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D REIFOR_02137 cheR; chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D REIFOR_01767 cehR; chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D REIFOR_01518 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D REIFOR_01527 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D REIFOR_01528 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D REIFOR_02805 pomA; flagellar motor protein PomA K02556 motA; chemotaxis protein MotA
D REIFOR_02160 motA; flagellar motor rotation protein MotA K02556 motA; chemotaxis protein MotA
D REIFOR_02804 motB; flagellar motor rotation protein MotB K02557 motB; chemotaxis protein MotB
D REIFOR_02159 motB; flagellar motor rotation protein MotB K02557 motB; chemotaxis protein MotB
D REIFOR_02171 outer membrane protein, OmpA/MotB family K02557 motB; chemotaxis protein MotB
D REIFOR_01398 motB; outer membrane protein, OmpA/MotB family K02557 motB; chemotaxis protein MotB
D REIFOR_03061 motB; outer membrane protein, OmpA/MotB family K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:rfo02040]
D REIFOR_01516 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D REIFOR_01517 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D REIFOR_01518 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D REIFOR_01519 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D REIFOR_01520 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D REIFOR_01521 fliJ; flagellar protein FliJ K02413 fliJ; flagellar protein FliJ
D REIFOR_01525 fliK; flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D REIFOR_01526 fliL; flagellar biosynthesis protein FliL K02415 fliL; flagellar protein FliL
D REIFOR_00036 fliL; flagellar biosynthesis protein FliL K02415 fliL; flagellar protein FliL
D REIFOR_01527 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D REIFOR_01528 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D REIFOR_01529 fliO; flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D REIFOR_01530 fliP; flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D REIFOR_01531 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D REIFOR_01532 fliR; flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D REIFOR_02168 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D REIFOR_01533 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D REIFOR_02139 flgA; flagellar basal-body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D REIFOR_02136 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D REIFOR_02135 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D REIFOR_02134 flgD; flagellar basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D REIFOR_02133 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D REIFOR_02132 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D REIFOR_02131 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D REIFOR_02130 flgH; flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D REIFOR_02129 flgI; flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D REIFOR_02128 flgJ; flagellar protein FlgJ [peptidoglycan hydrolase], GH73 family K02395 flgJ; peptidoglycan hydrolase FlgJ
D REIFOR_02127 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D REIFOR_02126 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D REIFOR_00445 hypothetical protein K09860 flgP; outer membrane protein FlgP
D REIFOR_02615 outer membrane lipoprotein omp16 precursor K21218 motY; sodium-type flagellar protein MotY
D REIFOR_00609 flaB; flagellin protein FlaB K02406 fliC; flagellin
D REIFOR_02124 flagellin domain protein K02406 fliC; flagellin
D REIFOR_01511 fliS; flagellar biosynthesis protein FliS K02422 fliS; flagellar secretion chaperone FliS
D REIFOR_02805 pomA; flagellar motor protein PomA K02556 motA; chemotaxis protein MotA
D REIFOR_02160 motA; flagellar motor rotation protein MotA K02556 motA; chemotaxis protein MotA
D REIFOR_02804 motB; flagellar motor rotation protein MotB K02557 motB; chemotaxis protein MotB
D REIFOR_02159 motB; flagellar motor rotation protein MotB K02557 motB; chemotaxis protein MotB
D REIFOR_02171 outer membrane protein, OmpA/MotB family K02557 motB; chemotaxis protein MotB
D REIFOR_01398 motB; outer membrane protein, OmpA/MotB family K02557 motB; chemotaxis protein MotB
D REIFOR_03061 motB; outer membrane protein, OmpA/MotB family K02557 motB; chemotaxis protein MotB
D REIFOR_02140 glgM; negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D REIFOR_00856 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D REIFOR_01513 fleQ; flagellar regulatory protein FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D REIFOR_02390 rpoN; RNA polymerase sigma-54 factor RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D REIFOR_01515 fleR; sigma-54 dependent transcriptional regulator / response regulator FleR K10943 flrC; two-component system, response regulator FlrC
D REIFOR_02165 RNA polymerase sigma 70 K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D REIFOR_00955 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:rfo04980]
D REIFOR_01939 ATP--cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D REIFOR_01262 B12-dependent methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:rfo01501]
D REIFOR_02712 oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA K15580 oppA; oligopeptide transport system substrate-binding protein
D REIFOR_02713 oppB; oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein
D REIFOR_02714 oppC; oligopeptide transport system permease protein OppC K15582 oppC; oligopeptide transport system permease protein
D REIFOR_02715 oppD; oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D REIFOR_02716 oppF; oligopeptide transport ATP-binding protein OppF K10823 oppF; oligopeptide transport system ATP-binding protein
D REIFOR_00304 type I secretion outer membrane protein, TolC precursor K12340 tolC; outer membrane protein
D REIFOR_00488 penicillin-binding protein 1A, GT51 family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D REIFOR_02640 penicillin-binding protein 2 (PBP-2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D REIFOR_02677 ftsI; cell division protein FtsI (peptidoglycan synthetase) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:rfo01502]
D REIFOR_02669 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D REIFOR_01089 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D REIFOR_02675 UDP-N-acetylmuramoylalanyl-D-glutamyl 2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D REIFOR_02674 phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D REIFOR_02671 UDP-N-acetylglucosamine N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D REIFOR_01226 peptidase, M15B family K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rfo01503]
D REIFOR_02191 phoQ; two-component system sensor histidine kinase PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D REIFOR_02192 two-component system response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP
D REIFOR_03183 cpxA; copper sensory histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D REIFOR_03182 cpxR; copper-sensing two-component system response regulator CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D REIFOR_00901 N-acetylmuramoyl-L-alanine amidase, CBM50 K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D REIFOR_02227 serine protease precursor MucD/AlgY associated with sigma factor RpoE / peptidase, family 1C K04771 degP; serine protease Do [EC:3.4.21.107]
D REIFOR_00011 dsbA; periplasmic thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D REIFOR_00304 type I secretion outer membrane protein, TolC precursor K12340 tolC; outer membrane protein
D REIFOR_00947 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:rfo01000]
C 01001 Protein kinases [BR:rfo01001]
D REIFOR_00113 RIO1 family kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D REIFOR_02969 serine/threonine kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D REIFOR_00648 HipA domain protein-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D REIFOR_01824 HipA domain protein-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D REIFOR_00246 polysaccharide biosynthesis protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D REIFOR_00376 phoR; phosphate regulon sensor protein PhoR (SphS) K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D REIFOR_02191 phoQ; two-component system sensor histidine kinase PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D REIFOR_03183 cpxA; copper sensory histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D REIFOR_03110 baeS; sensory histidine kinase BaeS K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D REIFOR_02256 nitrate/nitrite sensor protein K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D REIFOR_02219 barA; sensory histidine kinase BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D REIFOR_00159 two-component system sensor histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]
D REIFOR_00515 alginate biosynthesis protein AlgZ/FimS K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D REIFOR_00835 ntrB; nitrogen regulation protein NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D REIFOR_00422 pilS; two-component system sensor histidine kinase PilS K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D REIFOR_02336 two-component system sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D REIFOR_03215 two-component system sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D REIFOR_02563 dctB; C4-dicarboxylate transport sensor protein DctB K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D REIFOR_02939 sensor histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D REIFOR_02162 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D REIFOR_01770 cheA; signal transduction sensor histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D REIFOR_02866 hybrid signal transduction sensor histidine kinase / response regulator K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D REIFOR_01514 fleS; flagellar sensor histidine kinase FleS K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D REIFOR_01627 dhkJ; histidine kinase DhkJ K20973 sagS; two-component system, sensor histidine kinase SagS [EC:2.7.13.3]
D REIFOR_00839 GGDEF domain protein K20971 ladS; two-component system, sensor histidine kinase LadS
D REIFOR_02700 hybrid signal transduction sensor histidine kinase / response regulator K20972 retS; two-component system, sensor histidine kinase RetS
C 01009 Protein phosphatases and associated proteins [BR:rfo01009]
D REIFOR_00060 S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D REIFOR_00829 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D REIFOR_01571 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
D REIFOR_00870 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:rfo01002]
D REIFOR_03320 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D REIFOR_02659 leader peptidase (prepilin peptidase), A24A family K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D REIFOR_02022 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D REIFOR_00606 gamma-glutamyl-GABA hydrolase / peptidase, C26 family K07010 K07010; putative glutamine amidotransferase
D REIFOR_01173 toxin secretion ABC transporter ATP-binding protein subunit/permease / peptidase, family C39 K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D REIFOR_02966 toxin secretion ABC transporter ATP-binding protein subunit/permease K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D REIFOR_01983 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D REIFOR_00306 glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D REIFOR_00497 glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D REIFOR_00272 glmS; glucosamine--fructose-6-phosphate aminotransferase (isomerizing) GlmS K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D REIFOR_00847 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D REIFOR_00318 peptidase, M79 family K07052 K07052; CAAX protease family protein
D REIFOR_02965 CAAX amino protease, M79 family K07052 K07052; CAAX protease family protein
D REIFOR_01270 aminopeptidase N, M1 family K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D REIFOR_03252 oligopeptidase A, M3A family K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D REIFOR_00671 oligoendopeptidase F, M3B family K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D REIFOR_02539 oligopeptidase, family M3B K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D REIFOR_01115 hemagglutinin / peptidase, M4 family K08604 hap; vibriolysin [EC:3.4.24.25]
D REIFOR_02033 hemagglutinin / peptidase, M4 family K08604 hap; vibriolysin [EC:3.4.24.25]
D REIFOR_01121 polysaccharide-binding protein metalloprotease III, M4 family, CBM44 (2x) K08604 hap; vibriolysin [EC:3.4.24.25]
D REIFOR_01226 peptidase, M15B family K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D REIFOR_02437 secreted/periplasmic Zn-dependent peptidase, insulinase-like protein, M16A family K01408 IDE; insulysin [EC:3.4.24.56]
D REIFOR_01604 peptidase, M16C family K06972 PITRM1; presequence protease [EC:3.4.24.-]
D REIFOR_00319 zinc protease, M16 family K07263 pqqL; zinc protease [EC:3.4.24.-]
D REIFOR_00669 peptidase, M16B family K07263 pqqL; zinc protease [EC:3.4.24.-]
D REIFOR_02575 peptidase, M16B family K07263 pqqL; zinc protease [EC:3.4.24.-]
D REIFOR_00670 peptidase, M16B family K07263 pqqL; zinc protease [EC:3.4.24.-]
D REIFOR_01195 leucyl aminopeptidase, M17 family K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D REIFOR_02356 cytosol aminopeptidase, M17 family K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D REIFOR_01900 peptidase, M19 family K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D REIFOR_01223 dapE; N-succinyl-L,L-diaminopimelate desuccinylase / peptidase family M20A K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D REIFOR_00934 methionine aminopeptidase, M24A family K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D REIFOR_01800 Xaa-Pro aminopeptidase, M24 family K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D REIFOR_00109 proline aminopeptidase P II, M24B family K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D REIFOR_01887 peptidase, M24 family K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D REIFOR_00111 peptidase, M32 family K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D REIFOR_03051 isoaspartyl dipeptidase, M38 family K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-]
D REIFOR_00473 ftsH; cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D REIFOR_01034 peptidase, M48 family K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D REIFOR_00942 rseP; zinc metallopeptidase RseP, M50B family K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D REIFOR_02227 serine protease precursor MucD/AlgY associated with sigma factor RpoE / peptidase, family 1C K04771 degP; serine protease Do [EC:3.4.21.107]
D REIFOR_02636 D-alanyl-D-alanine carboxypeptidase, S11 family K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D REIFOR_00043 ATP-dependent Clp protease proteolytic subunit, S14 family K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D REIFOR_01668 clpP; ATP-dependent Clp protease proteolytic subunit ClpP, S14 family K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D REIFOR_01961 ATP-dependent protease La type I, S16 family K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D REIFOR_01666 ATP-dependent protease La type I, S16 family K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D REIFOR_01708 lexA; SOS-response repressor and protease LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D REIFOR_00662 umuD; error-prone repair protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D REIFOR_02225 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D REIFOR_00027 proline iminopeptidase, S33 family / carbohydrate esterase, CE1 family K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D REIFOR_00891 peptidase, S41 family K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D REIFOR_01647 peptidase, S49 family K04773 sppA; protease IV [EC:3.4.21.-]
D REIFOR_01715 peptidase, S49A family K04774 sohB; serine protease SohB [EC:3.4.21.-]
D REIFOR_01829 cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6]
D REIFOR_02848 ATP-dependent protease HslV, T1B family K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D REIFOR_00288 gamma-glutamyltranspeptidase, T3 family K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126]
D REIFOR_02117 peptidase, U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D REIFOR_00216 tldE; TldE/PmbA protein, part of proposed TldE/TldD proteolytic complex / peptidase, U62 family K03592 pmbA; PmbA protein
D REIFOR_00215 TldD protein, part of proposed TldE/TldD proteolytic complex / peptidase, U62 family K03568 tldD; TldD protein
D REIFOR_02920 hflC; HflC protein / peptidase, I87 family K04087 hflC; modulator of FtsH protease HflC
D REIFOR_00908 hflC; HflC protein / peptidase, I87 family K04087 hflC; modulator of FtsH protease HflC
D REIFOR_02919 hflK; HflK protein K04088 hflK; modulator of FtsH protease HflK
D REIFOR_00907 hlfK; HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:rfo01003]
D REIFOR_01713 glycosyl transferase, GT4 family K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D REIFOR_01418 glycogen synthase, ADP-glucose transglucosylase, GT5 family K00703 glgA; starch synthase [EC:2.4.1.21]
D REIFOR_00884 penicillin-binding protein 1B, GT51 family K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D REIFOR_00488 penicillin-binding protein 1A, GT51 family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D REIFOR_02931 WecB/TagA/CpsF family glycosyltransferase, GT26 family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D REIFOR_01148 glycosyltransferase, GT81 family K13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:rfo01005]
D REIFOR_00947 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D REIFOR_00948 lipid-A-disaccharide synthase, GT19 family K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D REIFOR_02665 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, CE11 family K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D REIFOR_00945 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D REIFOR_01676 UDP-2,3-diacylglucosamine hydrolase, GT40 family K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D REIFOR_01652 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D REIFOR_00385 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D REIFOR_00315 3-deoxy-D-manno-octulosonic-acid transferase, GT30 family K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D REIFOR_03316 lipid A 3-O-deacylase-like protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D REIFOR_01661 2-keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D REIFOR_01651 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D REIFOR_01662 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D REIFOR_02386 D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D REIFOR_01487 O-antigen polymerase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D REIFOR_02372 wadC; lipopolysaccharide core biosynthesis mannosyltransferase WadC, GT4 family K12989 lpcC; mannosyltransferase [EC:2.4.1.-]
D REIFOR_02685 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D REIFOR_01494 UDP-N-acetylgalactosaminyltransferase, GT4 family K13012 wbqP; O-antigen biosynthesis protein WbqP
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rfo01011]
D REIFOR_02382 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D REIFOR_01650 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D REIFOR_02670 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D REIFOR_02673 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D REIFOR_02676 UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D REIFOR_02669 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D REIFOR_01089 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D REIFOR_02109 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D REIFOR_02674 phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D REIFOR_02671 UDP-N-acetylglucosamine N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D REIFOR_01215 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D REIFOR_00408 murJ; putative peptidoglycan lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D REIFOR_00488 penicillin-binding protein 1A, GT51 family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D REIFOR_00884 penicillin-binding protein 1B, GT51 family K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D REIFOR_02640 penicillin-binding protein 2 (PBP-2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D REIFOR_02677 ftsI; cell division protein FtsI (peptidoglycan synthetase) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D REIFOR_02636 D-alanyl-D-alanine carboxypeptidase, S11 family K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D REIFOR_01226 peptidase, M15B family K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D REIFOR_01549 soluble lytic murein transglycosylase precursor, GH23 family K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D REIFOR_02638 membrane-bound lytic murein transglycosylase B precursor family K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D REIFOR_01712 membrane-bound lytic murein transglycosylase D precursor, CBM50 (3x), GH23 family K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D REIFOR_02625 membrane-bound lytic murein transglycosylase, GH23 family K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D REIFOR_01637 pabC; aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D REIFOR_02637 rare lipoprotein A precursor K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D REIFOR_00901 N-acetylmuramoyl-L-alanine amidase, CBM50 K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:rfo01004]
D REIFOR_01642 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D REIFOR_01747 beta-ketoacyl synthase K18473 fabY; acetoacetyl-[acyl-carrier protein] synthase [EC:2.3.1.180]
D REIFOR_01181 3-oxoacyl-ACP synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D REIFOR_01639 3-oxoacyl-[acyl-carrier-protein] synthase, KASII K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D REIFOR_01456 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D REIFOR_01501 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D REIFOR_01641 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D REIFOR_01182 3-hydroxydecanoyl-ACP dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D REIFOR_00946 3-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D REIFOR_01581 trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D REIFOR_00863 carbohydrate esterase, CE3 family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D REIFOR_00441 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D REIFOR_00364 acyl-CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D REIFOR_01759 acyl-CoA desaturase (fatty acid desaturase) K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-]
D REIFOR_03205 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D REIFOR_02857 prpE; propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D REIFOR_03114 acetoacetyl-CoA synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D REIFOR_02079 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D REIFOR_02170 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D REIFOR_01218 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D REIFOR_01643 plsX; phosphate:acyl-ACP acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D REIFOR_03226 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:rfo01008]
C 01006 Prenyltransferases [BR:rfo01006]
D REIFOR_02807 ispA; geranyltranstransferase (farnesyldiphosphate synthase or FPP synthase) K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D REIFOR_02418 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D REIFOR_00939 UDP pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D REIFOR_00903 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D REIFOR_02342 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D REIFOR_00378 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D REIFOR_00025 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:rfo01007]
D REIFOR_01978 glutamyl-tRNA synthetase / glutamyl-tRNA(Gln) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D REIFOR_00165 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D REIFOR_02591 glutamyl-Q-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D REIFOR_03167 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D REIFOR_02772 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D REIFOR_02551 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D REIFOR_02846 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D REIFOR_01434 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D REIFOR_00410 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D REIFOR_01191 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D REIFOR_00848 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D REIFOR_02196 lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D REIFOR_01019 aspartyl-tRNA synthetase / aspartyl-tRNA(Asn) synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D REIFOR_02047 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D REIFOR_03301 glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D REIFOR_03300 glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D REIFOR_01594 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D REIFOR_01255 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D REIFOR_02571 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D REIFOR_00973 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D REIFOR_01974 phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D REIFOR_01973 phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D REIFOR_02183 aromatic amino acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D REIFOR_02585 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D REIFOR_01059 alaT; aminotransferase AlaT K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D REIFOR_00932 N-succinyl-L,L-diaminopimelate aminotransferase alternative K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D REIFOR_02379 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D REIFOR_03027 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D REIFOR_02188 putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D REIFOR_01843 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D REIFOR_00601 omega-amino acid--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D REIFOR_03054 succinylornithine transaminase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D REIFOR_03247 ectB; L-2,4-diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D REIFOR_01190 bioA; adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D REIFOR_01452 glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D REIFOR_03174 glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D REIFOR_00470 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D REIFOR_00925 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:rfo00194]
D REIFOR_00206 ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D REIFOR_00205 ATP synthase beta chain K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D REIFOR_00204 ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D REIFOR_00203 ATP synthase alpha chain K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D REIFOR_00202 ATP synthase delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D REIFOR_00201 ATP synthase B chain K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D REIFOR_00200 ATP synthase C chain K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D REIFOR_00199 ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:rfo03000]
D REIFOR_00790 arabinose operon regulatory protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D REIFOR_03052 transcriptional regulator, AraC family K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator
D REIFOR_02742 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D REIFOR_00433 ilvY; HTH-type transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D REIFOR_02885 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D REIFOR_00122 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D REIFOR_01702 transcriptional regulator, CysB family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D REIFOR_00553 transcriptional regulator, LysR family K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D REIFOR_01310 transcriptional regulator, LysR family K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D REIFOR_01898 transcriptional regulator, LysR family K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D REIFOR_00525 transcriptional regulator, LysR family K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D REIFOR_03098 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D REIFOR_01073 glycerol-3-phosphate regulon repressor, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D REIFOR_03091 ulaR; HTH-type transcriptional regulator UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
D REIFOR_01879 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D REIFOR_02112 galactose operon repressor, GalR-LacI family of transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D REIFOR_01367 galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D REIFOR_00591 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D REIFOR_03253 malR; maltose operon transcriptional repressor MalR, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D REIFOR_02455 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D REIFOR_02492 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D REIFOR_00560 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D REIFOR_02598 putative transcriptional regulator of N-acetylglucosamine utilization, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D REIFOR_02520 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D REIFOR_00064 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D REIFOR_02400 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D REIFOR_01237 transcriptional regulator, GntR family K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D REIFOR_03236 simA; transcriptional regulator SlmA, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D REIFOR_01187 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D REIFOR_02043 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D REIFOR_01292 transcriptional regulator, AcrR family K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
D REIFOR_01761 fabR; unsaturated fatty acid biosynthesis repressor FabR, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D REIFOR_00781 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D REIFOR_00032 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D REIFOR_03319 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D REIFOR_01802 transcriptional regulator, ArsR family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D REIFOR_01123 ATP-dependent transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D REIFOR_01125 malT; transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D REIFOR_02801 malT; transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D REIFOR_00360 phoB; transcriptional regulator PhoB K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D REIFOR_03173 malT; transcriptional activator of maltose regulon, MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D REIFOR_03036 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D REIFOR_00123 zinc-responsive transcriptional regulator, MerR family K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D REIFOR_02898 ferric uptake regulation protein FUR K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D REIFOR_02566 zinc uptake regulation protein ZUR K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D REIFOR_02705 cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D REIFOR_01004 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D REIFOR_02060 iscR; iron-sulfur cluster regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D REIFOR_01197 transcriptional regulator, ArsR family K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
D REIFOR_02647 transcriptional regulator, XRE family K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D REIFOR_02281 phosphogluconate repressor HexR, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D REIFOR_03139 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D REIFOR_02697 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D REIFOR_00399 trpR; transcriptional repressor protein TrpR K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D REIFOR_02854 hybrid signal transduction sensor histidine kinase / response regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D REIFOR_01513 fleQ; flagellar regulatory protein FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D REIFOR_00644 transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D REIFOR_02738 transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D REIFOR_00780 proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D REIFOR_01734 bolA; cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D REIFOR_00197 parB; chromosome (plasmid) partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D REIFOR_01447 rfaH; transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D REIFOR_01260 tyrR; transcriptional repressor protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D REIFOR_00045 Psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D REIFOR_00049 pspC; phage shock protein C, PspC K03973 pspC; phage shock protein C
D REIFOR_01319 FMN-binding protein negative transcriptional regulator K07734 paiB; transcriptional regulator
D REIFOR_01066 hypothetical protein K07735 algH; putative transcriptional regulator
D REIFOR_02628 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D REIFOR_02991 nrdR; ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D REIFOR_02680 mraZ; cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:rfo03021]
D REIFOR_02876 DinG family ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D REIFOR_00358 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D REIFOR_03126 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D REIFOR_03125 DNA-directed RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D REIFOR_03243 DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D REIFOR_00856 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D REIFOR_00963 RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D REIFOR_00455 RNA polymerase factor sigma-32 K03089 rpoH; RNA polymerase sigma-32 factor
D REIFOR_02390 rpoN; RNA polymerase sigma-54 factor RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D REIFOR_02165 RNA polymerase sigma 70 K02405 fliA; RNA polymerase sigma factor FliA
D REIFOR_01603 superfamily II DNA/RNA helicase, SNF2 family protein K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D REIFOR_00482 nusA; transcription termination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D REIFOR_02987 nusB; transcription termination protein NusB K03625 nusB; transcription antitermination protein NusB
D REIFOR_03131 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D REIFOR_03146 stringent starvation protein A K03599 sspA; stringent starvation protein A
D REIFOR_03145 stringent starvation protein B K03600 sspB; stringent starvation protein B
D REIFOR_02152 rsbU; serine phosphatase RsbU, regulator of sigma subunit K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D REIFOR_02228 rseC; sigma factor RpoE regulatory protein RseC K03803 rseC; sigma-E factor negative regulatory protein RseC
D REIFOR_02628 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D REIFOR_03018 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D REIFOR_02547 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D REIFOR_00540 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D REIFOR_00080 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:rfo03019]
D REIFOR_01649 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D REIFOR_02292 cytoplasmic axial filament protein CafA and ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D REIFOR_02223 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D REIFOR_00117 metallo-beta-lactamase family protein, RNA-specific K12574 rnj; ribonuclease J [EC:3.1.-.-]
D REIFOR_00911 3'-to-5' exoribonuclease RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D REIFOR_02619 3'-to-5' oligoribonuclease (orn) K13288 orn; oligoribonuclease [EC:3.1.-.-]
D REIFOR_01057 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D REIFOR_00297 DEAD-box ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D REIFOR_00633 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D REIFOR_00404 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D REIFOR_02340 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D REIFOR_01857 recS; ATP-dependent DNA helicase RecS (RecQ family) K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D REIFOR_00955 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D REIFOR_00487 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D REIFOR_00540 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D REIFOR_00080 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D REIFOR_00829 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D REIFOR_02894 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D REIFOR_01934 groEL; heat shock protein 60 family chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D REIFOR_00905 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D REIFOR_00231 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D REIFOR_02601 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D REIFOR_03190 adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D REIFOR_00975 carbon storage regulator K03563 csrA; carbon storage regulator
D REIFOR_02393 glmZ(sRNA)-inactivating NTPase K06958 rapZ; RNase adapter protein RapZ
D REIFOR_02078 RNA helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D REIFOR_01200 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:rfo03011]
D REIFOR_01162 SSU ribosomal protein S1p K02945 RP-S1; small subunit ribosomal protein S1
D REIFOR_00936 SSU ribosomal protein S2p (SAe) K02967 RP-S2; small subunit ribosomal protein S2
D REIFOR_00342 SSU ribosomal protein S3p (S3e) K02982 RP-S3; small subunit ribosomal protein S3
D REIFOR_00357 SSU ribosomal protein S4p (S9e) K02986 RP-S4; small subunit ribosomal protein S4
D REIFOR_00352 SSU ribosomal protein S5p (S2e) K02988 RP-S5; small subunit ribosomal protein S5
D REIFOR_01085 SSU ribosomal protein S6p K02990 RP-S6; small subunit ribosomal protein S6
D REIFOR_03123 SSU ribosomal protein S7p (S5e) K02992 RP-S7; small subunit ribosomal protein S7
D REIFOR_00349 SSU ribosomal protein S8p (S15Ae) K02994 RP-S8; small subunit ribosomal protein S8
D REIFOR_03150 SSU ribosomal protein S9p (S16e) K02996 RP-S9; small subunit ribosomal protein S9
D REIFOR_00335 SSU ribosomal protein S10p (S20e) K02946 RP-S10; small subunit ribosomal protein S10
D REIFOR_00356 SSU 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D REIFOR_03124 SSU ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D REIFOR_00355 SSU ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D REIFOR_00486 SSU ribosomal protein S15p (S13e) K02956 RP-S15; small subunit ribosomal protein S15
D REIFOR_02205 SSU ribosomal protein S16p K02959 RP-S16; small subunit ribosomal protein S16
D REIFOR_00345 SSU ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D REIFOR_01086 SSU ribosomal protein S18p K02963 RP-S18; small subunit ribosomal protein S18
D REIFOR_00340 SSU ribosomal protein S19p (S15e) K02965 RP-S19; small subunit ribosomal protein S19
D REIFOR_00407 SSU ribosomal protein S20p K02968 RP-S20; small subunit ribosomal protein S20
D REIFOR_00859 SSU ribosomal protein S21p K02970 RP-S21; small subunit ribosomal protein S21
D REIFOR_03129 LSU ribosomal protein L1p (L10Ae) K02863 RP-L1; large subunit ribosomal protein L1
D REIFOR_00339 LSU ribosomal protein L2p (L8e) K02886 RP-L2; large subunit ribosomal protein L2
D REIFOR_00336 LSU ribosomal protein L3p (L3e) K02906 RP-L3; large subunit ribosomal protein L3
D REIFOR_00337 LSU ribosomal protein L4p (L1e) K02926 RP-L4; large subunit ribosomal protein L4
D REIFOR_00348 LSU ribosomal protein L5p (L11e) K02931 RP-L5; large subunit ribosomal protein L5
D REIFOR_00350 LSU ribosomal protein L6p (L9e) K02933 RP-L6; large subunit ribosomal protein L6
D REIFOR_01087 LSU ribosomal protein L9p K02939 RP-L9; large subunit ribosomal protein L9
D REIFOR_03128 LSU ribosomal protein L10p (P0) K02864 RP-L10; large subunit ribosomal protein L10
D REIFOR_03130 LSU ribosomal protein L11p (L12e) K02867 RP-L11; large subunit ribosomal protein L11
D REIFOR_03127 LSU ribosomal protein L7/L12 (P1/P2) K02935 RP-L7; large subunit ribosomal protein L7/L12
D REIFOR_03151 LSU ribosomal protein L13p (L13Ae) K02871 RP-L13; large subunit ribosomal protein L13
D REIFOR_00346 LSU ribosomal protein L14p (L23e) K02874 RP-L14; large subunit ribosomal protein L14
D REIFOR_00353 LSU ribosomal protein L15p (L27Ae) K02876 RP-L15; large subunit ribosomal protein L15
D REIFOR_00343 LSU ribosomal protein L16p (L10e) K02878 RP-L16; large subunit ribosomal protein L16
D REIFOR_00359 LSU ribosomal protein L17p K02879 RP-L17; large subunit ribosomal protein L17
D REIFOR_00351 LSU ribosomal protein L18p (L5e) K02881 RP-L18; large subunit ribosomal protein L18
D REIFOR_02202 LSU ribosomal protein L19p K02884 RP-L19; large subunit ribosomal protein L19
D REIFOR_02568 LSU ribosomal protein L20p K02887 RP-L20; large subunit ribosomal protein L20
D REIFOR_02417 LSU ribosomal protein L21p K02888 RP-L21; large subunit ribosomal protein L21
D REIFOR_00341 LSU ribosomal protein L22p (L17e) K02890 RP-L22; large subunit ribosomal protein L22
D REIFOR_00338 LSU ribosomal protein L23p (L23Ae) K02892 RP-L23; large subunit ribosomal protein L23
D REIFOR_00347 LSU ribosomal protein L24p (L26e) K02895 RP-L24; large subunit ribosomal protein L24
D REIFOR_03228 LSU ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D REIFOR_00344 LSU ribosomal protein L29p (L35e) K02904 RP-L29; large subunit ribosomal protein L29
D REIFOR_01644 LSU ribosomal protein L32p K02911 RP-L32; large subunit ribosomal protein L32
D REIFOR_03227 LSU ribosomal protein L33p K02913 RP-L33; large subunit ribosomal protein L33
D REIFOR_03349 LSU ribosomal protein L34p K02914 RP-L34; large subunit ribosomal protein L34
D REIFOR_02569 LSU ribosomal protein L35p K02916 RP-L35; large subunit ribosomal protein L35
D REIFOR_01370 LSU ribosomal protein L25p K02897 RP-L25; large subunit ribosomal protein L25
D REIFOR_00439 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D REIFOR_00437 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D REIFOR_00438 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D REIFOR_03165 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:rfo03009]
D REIFOR_02223 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D REIFOR_00113 RIO1 family kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D REIFOR_02619 3'-to-5' oligoribonuclease (orn) K13288 orn; oligoribonuclease [EC:3.1.-.-]
D REIFOR_02222 era; GTP-binding protein Era K03595 era; GTPase
D REIFOR_02416 cgtA; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D REIFOR_02628 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D REIFOR_00482 nusA; transcription termination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D REIFOR_02987 nusB; transcription termination protein NusB K03625 nusB; transcription antitermination protein NusB
D REIFOR_03131 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D REIFOR_02778 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D REIFOR_00448 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D REIFOR_03304 ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D REIFOR_01211 ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D REIFOR_00460 16S rRNA (guanine(966)-N(2))-methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D REIFOR_00056 ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D REIFOR_00195 gldB; rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D REIFOR_02679 rRNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D REIFOR_02682 rRNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D REIFOR_01217 SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D REIFOR_00730 rRNA (guanine-N(1)-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D REIFOR_00912 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D REIFOR_00472 ftsJ; cell division protein FtsJ / ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D REIFOR_00841 ribosomal RNA large subunit methyltransferase F K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D REIFOR_01679 rlmG; 23S rRNA (guanine-N-2-)-methyltransferase RlmG K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D REIFOR_02641 rlmH; LSU m3methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D REIFOR_03193 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D REIFOR_00097 yhiR; DNA (exogeneous) utilization protein YhiR K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D REIFOR_01680 rlmL; 23S rRNA (guanine-N-2-)-methyltransferase RlmL K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D REIFOR_01052 rlmM; LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D REIFOR_02050 ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D REIFOR_02217 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D REIFOR_02184 ribosomal large subunit pseudouridine synthase D K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D REIFOR_02353 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D REIFOR_00212 ribosomal large subunit pseudouridine synthase D K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D REIFOR_02722 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D REIFOR_02530 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D REIFOR_01648 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D REIFOR_00426 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D REIFOR_00779 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D REIFOR_01582 ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D REIFOR_03162 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D REIFOR_03049 ribosomal-protein-S5p-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D REIFOR_03099 ribosomal protein S6 glutaminyl transferase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D REIFOR_02777 ribosomal-protein-L7p-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
D REIFOR_02204 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D REIFOR_01286 ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D REIFOR_02694 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D REIFOR_02145 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D REIFOR_01576 cupin-like domain protein, JmjC-type K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D REIFOR_01649 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D REIFOR_02292 cytoplasmic axial filament protein CafA and ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D REIFOR_02874 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D REIFOR_03039 dbpA; ATP-dependent 23S rRNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D REIFOR_00404 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D REIFOR_02620 rsgA; GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D REIFOR_02044 der; GTP-binding protein Der K03977 engA; GTPase
D REIFOR_01000 rbgA; 50S ribosomal subunit maturation GTPase RbgA K14540 rbgA; ribosome biogenesis GTPase A
D REIFOR_00906 hlfX; GTP-binding protein HflX K03665 hflX; GTPase
D REIFOR_03309 rimN; tRNA threonylcarbamoyladenosine biosynthesis protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D REIFOR_03242 GTP pyrophosphokinase,ppGpp synthetase II / guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D REIFOR_00484 ribosome-binding protein factor A K02834 rbfA; ribosome-binding factor A
D REIFOR_00481 rimP; ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP
D REIFOR_02642 Iojap protein K09710 ybeB; ribosome-associated protein
D REIFOR_02408 metal-binding protein heat shock protein K07042 ybeY; probable rRNA maturation factor
D REIFOR_00471 RNA-binding protein K07574 yhbY; RNA-binding protein
D REIFOR_02396 hypothetical protein K09889 yjgA; ribosome-associated protein
D REIFOR_01681 ribosome modulation factor K03812 rmf; ribosome modulation factor
D REIFOR_02391 yhbH; ribosome hibernation protein YhbH K05808 hpf; ribosome hibernation promoting factor
D REIFOR_01368 ychF; GTP-binding protein and nucleic acid-binding protein YchF K06942 ychF; ribosome-binding ATPase
D REIFOR_01645 protein, clustered with ribosomal protein L32p K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:rfo03016]
D REIFOR_00443 tRNA nucleotidyl transferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D REIFOR_01978 glutamyl-tRNA synthetase / glutamyl-tRNA(Gln) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D REIFOR_01255 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D REIFOR_00410 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D REIFOR_00848 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D REIFOR_01434 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D REIFOR_00165 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D REIFOR_02846 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D REIFOR_02196 lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D REIFOR_01019 aspartyl-tRNA synthetase / aspartyl-tRNA(Asn) synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D REIFOR_00973 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D REIFOR_02571 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D REIFOR_01594 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D REIFOR_02551 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D REIFOR_01191 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D REIFOR_02047 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D REIFOR_01974 phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D REIFOR_01973 phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D REIFOR_03167 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D REIFOR_02772 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D REIFOR_00028 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D REIFOR_00087 HIT family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D REIFOR_00453 tRNA (guanine46-N7-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D REIFOR_01989 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D REIFOR_00485 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D REIFOR_00959 tRNA pseudouridine 13 synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D REIFOR_02059 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D REIFOR_03309 rimN; tRNA threonylcarbamoyladenosine biosynthesis protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D REIFOR_00903 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D REIFOR_03346 trmE; GTPase and tRNA-U34 5-formylation enzyme TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D REIFOR_00194 gldA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D REIFOR_03296 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D REIFOR_03195 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D REIFOR_03348 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D REIFOR_02681 bacterial RNase P class A K01978 rnpB; M1 RNA
D REIFOR_02616 ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D REIFOR_03251 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D REIFOR_02557 exoribonuclease R K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D REIFOR_02086 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D REIFOR_00395 heme ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
D REIFOR_03301 glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D REIFOR_03300 glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D REIFOR_02591 glutamyl-Q-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D REIFOR_03184 ybaK; Cys-tRNA(Pro) deacylase YbaK K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D REIFOR_01718 tRNA dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D REIFOR_02696 tRNA dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D REIFOR_00979 tRNA-dihydrouridine synthase C K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D REIFOR_02406 tRNA-i(6)A37 methylthiotransferase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D REIFOR_03154 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D REIFOR_03155 tRNA (5-methoxyuridine) 34 synthase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D REIFOR_02101 smtA; SmtA protein K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D REIFOR_01678 tRNA (uracil(54)-C5)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D REIFOR_02203 tRNA (Guanine37-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D REIFOR_02066 tRNA:Cm32/Um32 methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D REIFOR_02210 tRNA:Cm32/Um32 methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D REIFOR_00854 S-adenosylmethionine-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D REIFOR_02828 trmL; tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D REIFOR_01498 tRNA pseudouridine synthase C K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D REIFOR_02184 ribosomal large subunit pseudouridine synthase D K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D REIFOR_02353 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D REIFOR_00212 ribosomal large subunit pseudouridine synthase D K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D REIFOR_02722 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D REIFOR_01579 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D REIFOR_01005 tRNA(Cytosine32)-2-thiocytidine synthetase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D REIFOR_01053 tusA; tRNA 5-methylaminomethyl-2-thiouridine synthase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D REIFOR_01035 sirA; response regulator SirA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D REIFOR_01600 tusD; tRNA 5-methylaminomethyl-2-thiouridine synthase TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D REIFOR_01597 tusE; TusE/DsrC/DsvC family sulfur relay protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D REIFOR_02232 folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress K06980 ygfZ; tRNA-modifying protein YgfZ
D REIFOR_01677 tRNA-(ms[2]io[6]A)-hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D REIFOR_02538 5-methylaminomethyl-2-thiouridine methyltransferase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D REIFOR_02767 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D REIFOR_01030 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D REIFOR_02098 organic radical-activating protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D REIFOR_02270 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D REIFOR_00900 epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D REIFOR_03295 tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D REIFOR_02768 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D REIFOR_00953 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D REIFOR_01214 yeaZ; M22 peptidase-like protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D REIFOR_00860 glycoprotease family protein / peptidase, M10A family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D REIFOR_02187 moeB; molybdopterin biosynthesis MoeB protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D REIFOR_00911 3'-to-5' exoribonuclease RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D REIFOR_00487 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D REIFOR_01814 VapC toxin protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C 03012 Translation factors [BR:rfo03012]
D REIFOR_03338 translation initiation factor SUI1-related protein K03113 EIF1; translation initiation factor 1
D REIFOR_00483 translation initiation factor 2 K02519 infB; translation initiation factor IF-2
D REIFOR_02570 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D REIFOR_00042 glutathione ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D REIFOR_00937 translation elongation factor TS K02357 tsf; elongation factor Ts
D REIFOR_03121 translation elongation factor Tu K02358 tuf; elongation factor Tu
D REIFOR_03122 translation elongation factor G K02355 fusA; elongation factor G
D REIFOR_01376 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D REIFOR_00938 ribosome recycling factor K02838 frr; ribosome recycling factor
D REIFOR_01377 prmC; protein-N-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D REIFOR_01369 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D REIFOR_01587 translation initiation factor 1 K02518 infA; translation initiation factor IF-1
D REIFOR_02786 translation elongation factor P K02356 efp; elongation factor P
D REIFOR_02197 peptide chain release factor 2, programmed frameshift-containing K02836 prfB; peptide chain release factor 2
D REIFOR_03153 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D REIFOR_03115 putative protein YaeJ K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:rfo03110]
D REIFOR_01586 clpA; ATP-dependent Clp protease ATP-binding protein subunit ClpA, S16 family K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D REIFOR_00428 protein disaggregation chaperone K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D REIFOR_01667 clpX; ATP-dependent Clp protease ATP-binding protein subunit ClpX, M41 family K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D REIFOR_02849 hslU; ATP-dependent hsl protease ATP-binding protein subunit HslU, M41 family K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D REIFOR_01571 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
D REIFOR_02894 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D REIFOR_02341 putative heat-shock protein Hsp 70 K04046 yegD; hypothetical chaperone protein
D REIFOR_01934 groEL; heat shock protein 60 family chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D REIFOR_02893 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D REIFOR_02921 cbpA; DnaJ-class molecular chaperone CbpA K05516 cbpA; curved DNA-binding protein
D REIFOR_00452 djlA; DnaJ-like protein DjlA K05801 djlA; DnaJ like chaperone protein
D REIFOR_00219 dnaJ; heat shock protein DnaJ K05801 djlA; DnaJ like chaperone protein
D REIFOR_03197 33 kDa chaperonin (heat shock protein 33) (Hsp33) K04083 hslO; molecular chaperone Hsp33
D REIFOR_02895 grpE; heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D REIFOR_00853 ibpA; heat shock protein IbpA K04080 ibpA; molecular chaperone IbpA
D REIFOR_00161 lbpA; 16 kDa heat shock protein A K04080 ibpA; molecular chaperone IbpA
D REIFOR_03196 ribosome-associated heat shock protein implicated in the recycling of the 50S subunit K04762 hslR; ribosome-associated heat shock protein Hsp15
D REIFOR_01935 groES; heat shock protein 60 family co-chaperone GroES K04078 groES; chaperonin GroES
D REIFOR_02227 serine protease precursor MucD/AlgY associated with sigma factor RpoE / peptidase, family 1C K04771 degP; serine protease Do [EC:3.4.21.107]
D REIFOR_00473 ftsH; cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D REIFOR_00199 ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D REIFOR_00886 secB; preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB
D REIFOR_03108 hypothetical protein K06006 cpxP; periplasmic protein CpxP/Spy
D REIFOR_00101 hypothetical protein K09796 pccA; periplasmic copper chaperone A
D REIFOR_00624 hypA; [NiFe] hydrogenase nickel incorporation protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D REIFOR_00623 hypB; [NiFe] hydrogenase nickel incorporation-associated protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D REIFOR_01675 ppiB; peptidyl-prolyl cis-trans isomerase PpiB K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D REIFOR_01664 peptidyl-prolyl cis-trans isomerase D, putative K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D REIFOR_03339 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D REIFOR_01046 peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D REIFOR_00411 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D REIFOR_03293 peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D REIFOR_00155 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D REIFOR_00313 ppiC; peptidyl-prolyl cis-trans isomerase PpiC K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D REIFOR_00450 surA; survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase SurA) K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D REIFOR_00081 thioredoxin domain protein K03671 TXN; thioredoxin
D REIFOR_01503 thioredoxin domain protein K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D REIFOR_02436 thioredoxin-like protein K05838 ybbN; putative thioredoxin
D REIFOR_00887 glutaredoxin 3 (Grx3) K03676 grxC; glutaredoxin 3
D REIFOR_03311 glutaredoxin K03676 grxC; glutaredoxin 3
D REIFOR_01063 glutaredoxin K07390 grxD; monothiol glutaredoxin
D REIFOR_00011 dsbA; periplasmic thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D REIFOR_03241 dsbB; periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D REIFOR_02007 ccmG; cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:rfo04131]
D REIFOR_02051 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D REIFOR_02042 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D REIFOR_01277 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D REIFOR_02259 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D REIFOR_02102 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D REIFOR_02282 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D REIFOR_01571 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
D REIFOR_01570 MFS transporter K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system
C 03051 Proteasome [BR:rfo03051]
D REIFOR_01571 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:rfo03032]
D REIFOR_01856 ribonuclease HI-related protein 2 K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D REIFOR_01710 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D REIFOR_00380 integration host factor K05787 hupA; DNA-binding protein HU-alpha
D REIFOR_01665 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D REIFOR_01972 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D REIFOR_01165 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D REIFOR_00001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D REIFOR_01088 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D REIFOR_00857 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D REIFOR_02433 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D REIFOR_00950 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D REIFOR_00002 DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D REIFOR_01194 DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D REIFOR_00849 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D REIFOR_01635 DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D REIFOR_01709 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D REIFOR_00125 DNA polymerase III alpha subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D REIFOR_02089 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D REIFOR_00949 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D REIFOR_02881 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D REIFOR_02002 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D REIFOR_01748 hda; DnaA regulatory inactivator Hda (homologous to DnaA) K10763 hda; DnaA-homolog protein
D REIFOR_01157 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D REIFOR_00004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D REIFOR_00503 topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D REIFOR_00300 topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D REIFOR_01558 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D REIFOR_00797 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:rfo03036]
D REIFOR_02223 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D REIFOR_00380 integration host factor K05787 hupA; DNA-binding protein HU-alpha
D REIFOR_01665 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D REIFOR_01972 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D REIFOR_01165 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D REIFOR_02921 cbpA; DnaJ-class molecular chaperone CbpA K05516 cbpA; curved DNA-binding protein
D REIFOR_00001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D REIFOR_02697 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D REIFOR_00905 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D REIFOR_00781 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D REIFOR_00032 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D REIFOR_03319 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D REIFOR_03117 ndpA; nucleoid-associated protein NdpA K06899 ndpA; nucleoid-associated protein
D REIFOR_02004 chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D REIFOR_02532 scpA; segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D REIFOR_02531 scpB; segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D REIFOR_02667 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D REIFOR_00956 ftsB; cell division protein FtsB K05589 ftsB; cell division protein FtsB
D REIFOR_00457 ftsE; cell division protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D REIFOR_02677 ftsI; cell division protein FtsI (peptidoglycan synthetase) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D REIFOR_01590 ftsK; cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D REIFOR_02678 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL
D REIFOR_02668 ftsQ; cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D REIFOR_02672 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D REIFOR_00456 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D REIFOR_02666 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D REIFOR_02003 zipA; cell division protein ZipA K03528 zipA; cell division protein ZipA
D REIFOR_00106 zapA; cell division Z-ring-associated protein ZapA K09888 zapA; cell division protein ZapA
D REIFOR_00107 hypothetical protein K09892 zapB; cell division protein ZapB
D REIFOR_02373 ATPase, AFG1 family K06916 zapE; cell division protein ZapE
D REIFOR_00901 N-acetylmuramoyl-L-alanine amidase, CBM50 K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D REIFOR_02648 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D REIFOR_02649 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D REIFOR_02650 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D REIFOR_01689 hypothetical protein K13053 sulA; cell division inhibitor SulA
D REIFOR_03236 simA; transcriptional regulator SlmA, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D REIFOR_02296 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D REIFOR_02295 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D REIFOR_02294 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D REIFOR_02639 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D REIFOR_02158 cobyric acid synthase K03496 parA; chromosome partitioning protein
D REIFOR_00039 cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D REIFOR_00196 parA; chromosome (plasmid) partitioning protein ParA K03496 parA; chromosome partitioning protein
D REIFOR_00197 parB; chromosome (plasmid) partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D REIFOR_00503 topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D REIFOR_00300 topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D REIFOR_00194 gldA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D REIFOR_00195 gldB; rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D REIFOR_02020 integrase K04763 xerD; integrase/recombinase XerD
D REIFOR_01438 ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D REIFOR_03079 fic; cell division protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D REIFOR_01905 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D REIFOR_00013 ysxC; GTP-binding protein YsxC K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:rfo03400]
D REIFOR_00116 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D REIFOR_02091 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D REIFOR_01863 cryptochrome / DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D REIFOR_01091 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D REIFOR_02719 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D REIFOR_01427 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D REIFOR_02876 DinG family ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D REIFOR_03232 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D REIFOR_01302 deoxyribodipyrimidine photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D REIFOR_02414 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D REIFOR_03299 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D REIFOR_01605 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D REIFOR_00175 endonuclease/exonuclease/phosphatase family protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D REIFOR_02199 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D REIFOR_02002 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D REIFOR_02881 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D REIFOR_02435 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D REIFOR_02182 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D REIFOR_01695 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D REIFOR_00217 superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D REIFOR_00236 uvrD; ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D REIFOR_03126 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D REIFOR_03125 DNA-directed RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D REIFOR_00358 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D REIFOR_03243 DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D REIFOR_01729 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D REIFOR_00966 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D REIFOR_00902 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D REIFOR_02580 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D REIFOR_02024 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D REIFOR_02806 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D REIFOR_00950 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D REIFOR_00002 DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D REIFOR_01194 DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D REIFOR_00849 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D REIFOR_01635 DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D REIFOR_01709 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D REIFOR_00125 DNA polymerase III alpha subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D REIFOR_02089 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D REIFOR_02433 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D REIFOR_03077 exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D REIFOR_03076 exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D REIFOR_03078 exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D REIFOR_00971 recA; DNA recombination and repair protein RecA K03553 recA; recombination protein RecA
D REIFOR_01022 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D REIFOR_01023 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D REIFOR_01020 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D REIFOR_02845 priA; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D REIFOR_02779 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
D REIFOR_02780 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D REIFOR_03013 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D REIFOR_00003 recF; DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D REIFOR_02886 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D REIFOR_02221 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D REIFOR_02087 recR; recombination protein RecR K06187 recR; recombination protein RecR
D REIFOR_02896 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D REIFOR_01997 rdgC; recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
D REIFOR_01157 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D REIFOR_00004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D REIFOR_01558 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D REIFOR_00380 integration host factor K05787 hupA; DNA-binding protein HU-alpha
D REIFOR_01665 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D REIFOR_02697 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D REIFOR_01972 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D REIFOR_01165 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D REIFOR_02340 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D REIFOR_01857 recS; ATP-dependent DNA helicase RecS (RecQ family) K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D REIFOR_02633 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D REIFOR_00661 umuC; error-prone, lesion bypass DNA polymerase V (UmuC) K03502 umuC; DNA polymerase V
D REIFOR_00662 umuD; error-prone repair protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D REIFOR_01708 lexA; SOS-response repressor and protease LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D REIFOR_00882 DNA-directed DNA polymerase B K02336 polB; DNA polymerase II [EC:2.7.7.7]
D REIFOR_02338 ascD; CDP-6-deoxy-L-threo-D-glycero-4-hexulose 3-dehydrase reductase K14160 imuA; protein ImuA
D REIFOR_02339 lmuB; DNA polymerase IV-like protein ImuB K14161 imuB; protein ImuB
D REIFOR_02343 DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D REIFOR_00972 recX; regulatory protein RecX K03565 recX; regulatory protein
D REIFOR_03289 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D REIFOR_01660 ATP-dependent helicase, DinG/Rad3 family K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D REIFOR_02302 ribonucleotide reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:rfo03029]
D REIFOR_03148 ubiquinol--cytochrome c reductase, cytochrome B subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D REIFOR_00483 translation initiation factor 2 K02519 infB; translation initiation factor IF-2
D REIFOR_02570 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D REIFOR_00937 translation elongation factor TS K02357 tsf; elongation factor Ts
D REIFOR_03121 translation elongation factor Tu K02358 tuf; elongation factor Tu
D REIFOR_03122 translation elongation factor G K02355 fusA; elongation factor G
D REIFOR_02222 era; GTP-binding protein Era K03595 era; GTPase
D REIFOR_03167 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D REIFOR_00848 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D REIFOR_01019 aspartyl-tRNA synthetase / aspartyl-tRNA(Asn) synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D REIFOR_02846 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D REIFOR_02298 aspartyl-tRNA(Asn) amidotransferase subunit A / glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D REIFOR_02299 aspartyl-tRNA(Asn) amidotransferase subunit B / glutamyl-tRNA(Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D REIFOR_02297 aspartyl-tRNA(Asn) amidotransferase subunit C / glutamyl-tRNA(Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D REIFOR_02433 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D REIFOR_00943 outer membrane protein assembly factor YaeT precursor K07277 SAM50; outer membrane protein insertion porin family
D REIFOR_02894 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D REIFOR_02895 grpE; heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D REIFOR_01934 groEL; heat shock protein 60 family chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D REIFOR_01935 groES; heat shock protein 60 family co-chaperone GroES K04078 groES; chaperonin GroES
D REIFOR_02893 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D REIFOR_00098 Zn-dependent hydrolase K17725 ETHE1; sulfur dioxygenase [EC:1.13.11.18]
D REIFOR_02059 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D REIFOR_01063 glutaredoxin K07390 grxD; monothiol glutaredoxin
D REIFOR_01438 ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D REIFOR_00025 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D REIFOR_00019 cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D REIFOR_00024 heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA K02259 COX15; heme a synthase [EC:1.17.99.9]
D REIFOR_03347 yidC; inner membrane protein translocase component YidC, long form K03217 yidC; YidC/Oxa1 family membrane protein insertase
D REIFOR_00022 surf1; cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion K14998 SURF1; surfeit locus 1 family protein
D REIFOR_00026 Sco1/SenC family protein K07152 SCO1; protein SCO1
D REIFOR_01571 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:rfo02000]
D REIFOR_02747 efflux ABC transporter, transmembrane ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D REIFOR_03007 ABC-type multidrug transport system, ATPase and permease component K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D REIFOR_01860 ABC transporter, ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D REIFOR_03006 ABC-type multidrug transport system, ATPase and permease component K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D REIFOR_01859 ABC transporter, ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D REIFOR_00262 ABC-type multidrug transport system, ATPase and permease component K24846 pglK; ATP-binding cassette, subfamily B, bacterial PglK [EC:7.5.2.-]
D REIFOR_02950 type I secretion system ATPase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D REIFOR_00675 toxin RTX-I translocation ATP-binding protein K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D REIFOR_00760 RTX toxin transporter, ATP-binding protein / leukotoxin translocation protein LktB / peptidase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D REIFOR_02543 RTX transport protein B, peptidase family S1C K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D REIFOR_01173 toxin secretion ABC transporter ATP-binding protein subunit/permease / peptidase, family C39 K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D REIFOR_02966 toxin secretion ABC transporter ATP-binding protein subunit/permease K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D REIFOR_01499 msbA; lipid A export ATP-binding protein/permease protein MsbA K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D REIFOR_02108 ABC transporter, ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D REIFOR_01552 heme ABC transporter ATPase K15738 uup; ABC transport system ATP-binding/permease protein
D REIFOR_01102 modA; molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA K02020 modA; molybdate transport system substrate-binding protein
D REIFOR_01103 modB; molybdenum transport system permease protein ModB K02018 modB; molybdate transport system permease protein
D REIFOR_01104 cysA; sulfate and thiosulfate import ATP-binding protein CysA K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D REIFOR_00110 modF; putative molybdenum transport ATP-binding protein ModF K05776 modF; molybdate transport system ATP-binding protein
D REIFOR_02888 nitrate ABC transporter, nitrate-binding protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D REIFOR_02889 nitrate ABC transporter, permease protein K15577 nrtB; nitrate/nitrite transport system permease protein
D REIFOR_02890 nitrate ABC transporter, ATP-binding protein K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D REIFOR_00656 ferric iron ABC transporter, iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D REIFOR_00659 ferric iron ABC transporter, iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D REIFOR_01780 ferric iron ABC transporter, iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D REIFOR_00657 ferric iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D REIFOR_01779 ferric iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D REIFOR_00658 ferric iron ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D REIFOR_01778 ferric iron ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D REIFOR_02362 thiamin ABC transporter, substrate-binding protein component K02064 thiB; thiamine transport system substrate-binding protein
D REIFOR_02361 thiamin ABC transporter, transmembrane component K02063 thiP; thiamine transport system permease protein
D REIFOR_02360 thiamin ABC transporter, ATPase component K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D REIFOR_01253 spermidine / putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D REIFOR_01131 proX; L-proline glycine betaine binding protein ABC transporter protein ProX K02002 proX; glycine betaine/proline transport system substrate-binding protein
D REIFOR_01130 proW; L-proline glycine betaine ABC transport system permease protein ProW K02001 proW; glycine betaine/proline transport system permease protein
D REIFOR_01129 proV; L-proline glycine betaine ABC transport system permease protein ProV K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D REIFOR_00468 ynjB; ABC transporter, periplasmic substrate-binding protein YnjB K05777 ynjB; putative thiamine transport system substrate-binding protein
D REIFOR_00467 ynjC; ABC transporter, permease protein YnjC K05778 ynjC; putative thiamine transport system permease protein
D REIFOR_00466 ynjD; ABC transporter, ATP-binding protein YnjD K05779 ynjD; putative thiamine transport system ATP-binding protein
D REIFOR_02825 malE; maltose/maltodextrin ABC transporter, substrate-binding protein periplasmic protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D REIFOR_00228 malE; maltose/maltodextrin ABC transporter, substrate-binding protein periplasmic protein MalE K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D REIFOR_00229 malF; maltose/maltodextrin ABC transporter, permease protein MalF K10109 malF; maltose/maltodextrin transport system permease protein
D REIFOR_00230 malG; maltose/maltodextrin ABC transporter, permease protein MalG K10110 malG; maltose/maltodextrin transport system permease protein
D REIFOR_02488 N-acetyl-D-glucosamine ABC transport system, ATP-binding protein component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D REIFOR_00512 ABC-type sugar transport system, ATPase component K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D REIFOR_02274 ugpC; glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D REIFOR_02460 ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D REIFOR_02461 ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D REIFOR_02485 N-acetyl-D-glucosamine ABC transport system, sugar-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D REIFOR_02486 N-acetyl-D-glucosamine ABC transport system, permease protein 1 K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D REIFOR_02487 N-acetyl-D-glucosamine ABC transport system, permease protein 2 K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D REIFOR_03156 aglE; alpha-glucoside ABC transporter, periplasmic substrate-binding protein AglE precursor K10232 aglE; alpha-glucoside transport system substrate-binding protein
D REIFOR_03157 alpha-glucoside ABC transporter, inner membrane protein AglF K10233 aglF; alpha-glucoside transport system permease protein
D REIFOR_03158 aglG; alpha-glucoside ABC transporter, permease protein AglG K10234 aglG; alpha-glucoside transport system permease protein
D REIFOR_00509 ABC-type sugar transport system, periplasmic component K17315 gtsA; glucose/mannose transport system substrate-binding protein
D REIFOR_02484 ABC-type sugar transport system, periplasmic component K17315 gtsA; glucose/mannose transport system substrate-binding protein
D REIFOR_00510 ABC-type sugar transport system, permease component K17316 gtsB; glucose/mannose transport system permease protein
D REIFOR_00511 ABC-type sugar transport system, permease component K17317 gtsC; glucose/mannose transport system permease protein
D REIFOR_00786 araF; L-arabinose-binding protein periplasmic protein precursor AraF K10546 chvE; putative multiple sugar transport system substrate-binding protein
D REIFOR_00788 monosaccharide ABC transporter permease protein K10547 gguB; putative multiple sugar transport system permease protein
D REIFOR_00787 araG; L-arabinose transport ATP-binding protein AraG K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D REIFOR_02759 inositol transport system sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D REIFOR_02762 sugar ABC transporter, substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D REIFOR_00747 ribose ABC transport system, substrate binding protein unit K10439 rbsB; ribose transport system substrate-binding protein
D REIFOR_01894 rbsB; ribose ABC transporter, periplasmic ribose-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein
D REIFOR_00391 frcB; fructose ABC transporter, substrate-binding protein component FrcB K10439 rbsB; ribose transport system substrate-binding protein
D REIFOR_00748 rbsC; ribose ABC transport system, permease protein RbsC K10440 rbsC; ribose transport system permease protein
D REIFOR_01889 rbsC; ribose ABC transport system, permease protein RbsC K10440 rbsC; ribose transport system permease protein
D REIFOR_02756 inositol transport system permease protein K10440 rbsC; ribose transport system permease protein
D REIFOR_00392 fructose ABC transport system, permease protein K10440 rbsC; ribose transport system permease protein
D REIFOR_01893 rbsA; ribose ABC transport system, ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D REIFOR_02757 putative L-rhamnose ABC transporter, ATP-binding protein component K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D REIFOR_00749 rbsA; ribose ABC transport system, ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D REIFOR_00390 frcA; fructose ABC transporter, ATP-binding protein component FrcA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D REIFOR_03273 inositol transport system sugar-binding protein K17213 K17213; inositol transport system substrate-binding protein
D REIFOR_03272 inositol transport system permease protein K17214 K17214; inositol transport system permease protein
D REIFOR_03271 inositol transport system ATP-binding protein K17215 K17215; inositol transport system ATP-binding protein
D REIFOR_00638 ugpA; glycerol-3-phosphate ABC transporter, permease protein UgpA K17321 glpV; glycerol transport system substrate-binding protein
D REIFOR_00636 ugpA; glycerol-3-phosphate ABC transporter, permease protein UgpA K17322 glpP; glycerol transport system permease protein
D REIFOR_00641 ugpA; glycerol-3-phosphate ABC transporter, permease protein UgpA K17322 glpP; glycerol transport system permease protein
D REIFOR_00635 glycerol-3-phosphate ABC transport system, permease component K17323 glpQ; glycerol transport system permease protein
D REIFOR_00640 upgE; glycerol-3-phosphate ABC transporter, permease protein UgpE K17323 glpQ; glycerol transport system permease protein
D REIFOR_00643 glycerol-3-phosphate-transporting ATPase K17324 glpS; glycerol transport system ATP-binding protein
D REIFOR_02733 ABC transporter, ATP-binding protein K17324 glpS; glycerol transport system ATP-binding protein
D REIFOR_00642 upgC; glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC K17325 glpT; glycerol transport system ATP-binding protein
D REIFOR_02732 ugpC; glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC K17325 glpT; glycerol transport system ATP-binding protein
D REIFOR_00759 basic outer membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D REIFOR_00075 putative nucleoside ABC transporter, substrate-binding protein component K07335 bmpA; basic membrane protein A and related proteins
D REIFOR_02798 ABC transporter, substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D REIFOR_00274 Bmp family protein K07335 bmpA; basic membrane protein A and related proteins
D REIFOR_00077 putative nucleoside ABC transporter, permease 1 component K23535 nupB; general nucleoside transport system permease protein
D REIFOR_02796 nucleoside ABC transporter, permease protein 1 K23535 nupB; general nucleoside transport system permease protein
D REIFOR_00275 rbsC; ribose ABC transport system, permease protein RbsC K23535 nupB; general nucleoside transport system permease protein
D REIFOR_00078 putative nucleoside ABC transporter, permease 2 component K23536 nupC; general nucleoside transport system permease protein
D REIFOR_02797 putative deoxyribose-specific ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein
D REIFOR_00276 rbsC; ribose ABC transport system, permease protein RbsC K23536 nupC; general nucleoside transport system permease protein
D REIFOR_00076 putative nucleoside ABC transporter, ATP-binding protein component K23537 nupA; general nucleoside transport system ATP-binding protein
D REIFOR_00278 nucleoside ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D REIFOR_02795 sugar ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D REIFOR_02384 ABC-type transport system, auxiliary component K07323 mlaC; phospholipid transport system substrate-binding protein
D REIFOR_00552 ABC-type sugar transport system, periplasmic component K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D REIFOR_02178 multiple sugar ABC transporter, substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D REIFOR_00811 N-acetyl-D-glucosamine ABC transport system, sugar-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D REIFOR_02456 dihydroxyacetone ABC transport system, substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D REIFOR_02736 ABC transporter, substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D REIFOR_02735 ugpA; SN-glycerol-3-phosphate transport system permease protein UgpA K02025 ABC.MS.P; multiple sugar transport system permease protein
D REIFOR_02175 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein
D REIFOR_00809 N-acetyl-D-glucosamine ABC transport system, permease protein 1 K02025 ABC.MS.P; multiple sugar transport system permease protein
D REIFOR_02457 dihydroxyacetone ABC transport system, permease protein 2 K02025 ABC.MS.P; multiple sugar transport system permease protein
D REIFOR_02734 ABC transporter, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D REIFOR_02176 sugar ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein
D REIFOR_00810 N-acetyl-D-glucosamine ABC transport system, permease protein 2 K02026 ABC.MS.P1; multiple sugar transport system permease protein
D REIFOR_02458 dihydroxyacetone ABC transport system, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D REIFOR_00365 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D REIFOR_00366 pstC; phosphate transport system permease protein PstC K02037 pstC; phosphate transport system permease protein
D REIFOR_00367 pstA; phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D REIFOR_00368 pstB; phosphate transport ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D REIFOR_00558 phosphonate ABC transporter, phosphate-binding protein periplasmic component K02044 phnD; phosphonate transport system substrate-binding protein
D REIFOR_00645 phosphonate ABC transporter, phosphate-binding protein periplasmic component K02044 phnD; phosphonate transport system substrate-binding protein
D REIFOR_03217 phosphonate ABC transporter phosphate-binding protein periplasmic component K02044 phnD; phosphonate transport system substrate-binding protein
D REIFOR_00559 phnE; phosphonate ABC transporter permease protein phnE K02042 phnE; phosphonate transport system permease protein
D REIFOR_00647 pnhE; phosphonate ABC transporter, permease protein phnE K02042 phnE; phosphonate transport system permease protein
D REIFOR_03219 phnE2; phosphonate ABC transporter permease protein phnE2 K02042 phnE; phosphonate transport system permease protein
D REIFOR_03220 phnE1; phosphonate ABC transporter permease protein phnE1 K02042 phnE; phosphonate transport system permease protein
D REIFOR_00557 phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D REIFOR_00646 phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D REIFOR_03218 phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D REIFOR_00842 gltI; glutamate aspartate periplasmic binding protein precursor GltI K09969 aapJ; general L-amino acid transport system substrate-binding protein
D REIFOR_00843 gltJ; glutamate aspartate transport system permease protein GltJ K09970 aapQ; general L-amino acid transport system permease protein
D REIFOR_00844 glutamate transport membrane-spanning protein K09971 aapM; general L-amino acid transport system permease protein
D REIFOR_00845 arginine ABC transporter ATP-binding protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D REIFOR_02980 lysine-arginine-ornithine-binding protein periplasmic protein precursor K10022 aotJ; arginine/ornithine transport system substrate-binding protein
D REIFOR_02978 hisM; histidine ABC transporter, permease protein HisM K10023 aotM; arginine/ornithine transport system permease protein
D REIFOR_02979 aotQ; arginine/ornithine ABC transporter, permease protein AotQ K10024 aotQ; arginine/ornithine transport system permease protein
D REIFOR_02981 aotP; arginine/ornithine ABC transporter, ATP-binding protein AotP K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1]
D REIFOR_00533 amino acid ABC transporter, substrate-binding protein K23061 lhpP; hydroxyproline transporter system substrate-binding protein
D REIFOR_00534 glnP; glutamine transport system permease protein glnP K23062 lhpM; hydroxyproline transport system permease protein
D REIFOR_00535 glnP; glutamine transport system permease protein glnP K23063 lhpN; hydroxyproline transport system permease protein
D REIFOR_00536 glnQ; glutamine transport ATP-binding protein GlnQ (TC3.A.1.3.2) K23064 lhpO; hydroxyproline transport system ATP-binding protein [EC:7.4.2.1]
D REIFOR_01382 branched-chain amino acid ABC transporter, aminoacid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D REIFOR_00581 branched-chain amino acid ABC transporter, periplasmic substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D REIFOR_01392 livH; high-affinity branched-chain amino acid transport system permease protein LivH K01997 livH; branched-chain amino acid transport system permease protein
D REIFOR_00582 branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D REIFOR_01391 livM; branched-chain amino acid transport system permease protein LivM K01998 livM; branched-chain amino acid transport system permease protein
D REIFOR_01393 livF; branched-chain amino acid transport ATP-binding protein LivF K01996 livF; branched-chain amino acid transport system ATP-binding protein
D REIFOR_00584 branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D REIFOR_00705 urtA; urea ABC transporter, substrate binding protein UrtA K11959 urtA; urea transport system substrate-binding protein
D REIFOR_00706 urtB; urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein
D REIFOR_00707 urtC; urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein
D REIFOR_00708 urtD; urea ABC transporter, ATPase protein UrtD K11962 urtD; urea transport system ATP-binding protein
D REIFOR_00709 urtE; urea ABC transporter, ATPase protein UrtE K11963 urtE; urea transport system ATP-binding protein
D REIFOR_02809 extracellular solute-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D REIFOR_02712 oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA K15580 oppA; oligopeptide transport system substrate-binding protein
D REIFOR_02713 oppB; oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein
D REIFOR_02714 oppC; oligopeptide transport system permease protein OppC K15582 oppC; oligopeptide transport system permease protein
D REIFOR_02715 oppD; oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D REIFOR_02716 oppF; oligopeptide transport ATP-binding protein OppF K10823 oppF; oligopeptide transport system ATP-binding protein
D REIFOR_02982 dipeptide-binding protein ABC transporter, periplasmic substrate-binding protein component K12368 dppA; dipeptide transport system substrate-binding protein
D REIFOR_02983 dppB; dipeptide transport system permease protein DppB K12369 dppB; dipeptide transport system permease protein
D REIFOR_02984 dppC; dipeptide transport system permease protein DppC K12370 dppC; dipeptide transport system permease protein
D REIFOR_02985 dppD; dipeptide transport ATP-binding protein DppD (TC3.A.1.5.2) K12371 dppD; dipeptide transport system ATP-binding protein
D REIFOR_02986 dppF; dipeptide transport ATP-binding protein DppF (TC3.A.1.5.2) K12372 dppF; dipeptide transport system ATP-binding protein
D REIFOR_00285 dipeptide-binding protein ABC transporter, periplasmic substrate-binding protein component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D REIFOR_01360 oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D REIFOR_02426 oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D REIFOR_01361 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D REIFOR_02425 oligopeptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D REIFOR_00284 dppB; dipeptide-binding protein ABC transporter, permease protein DppB, putative hemin permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D REIFOR_00283 dppC; dipeptide-binding protein ABC transporter, permease protein DppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D REIFOR_01362 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D REIFOR_02424 oppC; oligopeptide ABC transporter, permease protein OppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D REIFOR_00282 dppD; dipeptide-binding protein ABC transporter, ATP-binding protein DppD (TC3.A.1.5.2) K02031 ddpD; peptide/nickel transport system ATP-binding protein
D REIFOR_01363 oppD; oligopeptide ABC transporter, ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D REIFOR_02423 oppD; oligopeptide ABC transporter, ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D REIFOR_02909 btuF; vitamin B12 ABC transporter, B12-binding protein component BtuF K25034 btuF; cobalamin transport system substrate-binding protein
D REIFOR_02910 btuC; vitamin B12 ABC transporter, permease component BtuC K25027 btuC; cobalamin transport system permease protein
D REIFOR_02911 btuD; vitamin B12 ABC transporter, ATPase component BtuD K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D REIFOR_02565 znuA; zinc ABC transporter, periplasmic-binding protein ZnuA K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D REIFOR_01607 znuB; zinc ABC transporter, inner membrane permease protein ZnuB K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D REIFOR_01608 znuC; zinc ABC transporter, ATP-binding protein ZnuC K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D REIFOR_01442 putative permease, YjgP/YjgQ family K07091 lptF; lipopolysaccharide export system permease protein
D REIFOR_01441 putative permease, YjgP/YjgQ family K11720 lptG; lipopolysaccharide export system permease protein
D REIFOR_02389 lptB; lipopolysaccharide ABC transporter, ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D REIFOR_01657 multidrug ABC transporter substrate-binding protein K09808 lolC_E; lipoprotein-releasing system permease protein
D REIFOR_01402 ABC transporter, permease component, involved in lipoprotein release K09808 lolC_E; lipoprotein-releasing system permease protein
D REIFOR_01656 ABC transporter, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D REIFOR_02010 ccmCE; cytochrome c-type biogenesis protein CcmD, interacts with CcmCE K02196 ccmD; heme exporter protein D
D REIFOR_02011 ccmE; cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE K02195 ccmC; heme exporter protein C
D REIFOR_02012 ccmB; ABC transporter involved in cytochrome c biogenesis, CcmB subunit K02194 ccmB; heme exporter protein B
D REIFOR_02013 ccmA; ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D REIFOR_00456 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D REIFOR_00457 ftsE; cell division protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D REIFOR_00666 ABC-type multidrug transport system, permease component K25154 evrC; viologen exporter family transport system permease protein
D REIFOR_00665 daunorubicin ABC transporter permease K25155 evrB; viologen exporter family transport system permease protein
D REIFOR_00667 daunorubicin ABC transporter, ATP-binding protein K25156 evrA; viologen exporter family transport system ATP-binding protein
D REIFOR_02271 ABC-type multidrug transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D REIFOR_00739 ABC-type multidrug transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D REIFOR_02839 ABC-type multidrug transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D REIFOR_02840 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D REIFOR_00631 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D REIFOR_02272 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D REIFOR_00738 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D REIFOR_02026 lipoprotein release ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D REIFOR_01274 multidrug ABC transporter substrate-binding protein K02004 ABC.CD.P; putative ABC transport system permease protein
D REIFOR_01348 ABC-type antimicrobial peptide transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D REIFOR_00865 ABC-type transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D REIFOR_01401 ABC transporter, permease component, involved in lipoprotein release K02004 ABC.CD.P; putative ABC transport system permease protein
D REIFOR_02028 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D REIFOR_01273 macrolide ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D REIFOR_01347 methionine ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D REIFOR_01403 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D REIFOR_00864 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D REIFOR_02057 sufC; iron-sulfur cluster assembly ATPase protein SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D REIFOR_03015 sodium:sulfate symporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D REIFOR_01054 matE; multidrug transporter MatE K26939 norM; MATE family, multidrug efflux pump
D REIFOR_02720 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D REIFOR_01790 multi antimicrobial extrusion protein (Na(+)/drug antiporter) K26937 dinF; MATE family, multidrug efflux pump
D REIFOR_02442 matE; MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D REIFOR_03327 lactose/glucose:proton efflux pump, MFS family K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter
D REIFOR_00840 MFS transporter / oxalate:formate antiporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D REIFOR_01417 putative 3-phenylpropionic acid transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D REIFOR_01777 MFS transporter K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter
D REIFOR_00166 MFS transporter, putative bicyclomycin resistance protein Bcr K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D REIFOR_00695 MFS transporter K08152 lmrP; MFS transporter, DHA1 family, multidrug resistance protein B
D REIFOR_01944 MFS transporter, putative bacilysin exporter BacE K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D REIFOR_00162 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D REIFOR_01570 MFS transporter K06902 UMF1; MFS transporter, UMF1 family
D REIFOR_00578 ptsP; phosphotransferase system enzyme I PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D REIFOR_03189 phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D REIFOR_02394 phosphotransferase system, phosphocarrier HPr protein K08485 ptsO; phosphocarrier protein NPr
D REIFOR_03094 PTS fructose transporter subunit IIA K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202]
D REIFOR_03092 PTS fructose transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D REIFOR_03093 PTS fructose transporter K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D REIFOR_02392 PTS fructose transporter subunit IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D REIFOR_00895 iron transporter K10716 kch; voltage-gated potassium channel
D REIFOR_02121 ammonium transporter K03320 amt; ammonium transporter, Amt family
D REIFOR_03206 ammonium transporter K03320 amt; ammonium transporter, Amt family
D REIFOR_00688 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D REIFOR_03323 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D REIFOR_03146 stringent starvation protein A K03599 sspA; stringent starvation protein A
D REIFOR_01143 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog
D REIFOR_00914 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog
D REIFOR_00915 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog
D REIFOR_01601 putative TEGT family carrier/transport protein K19416 yccA; modulator of FtsH protease
D REIFOR_00291 kefA; potassium efflux system KefA protein / small-conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel
D REIFOR_02553 mscS; mechanosensitive ion channel protein MscS K16052 ynaI; MscS family membrane protein
D REIFOR_02912 Mg/Co/Ni transporter MgtE / CBS domain protein K06213 mgtE; magnesium transporter
D REIFOR_02395 Mg/Co/Ni transporter MgtE / CBS domain protein K06213 mgtE; magnesium transporter
D REIFOR_02805 pomA; flagellar motor protein PomA K02556 motA; chemotaxis protein MotA
D REIFOR_02160 motA; flagellar motor rotation protein MotA K02556 motA; chemotaxis protein MotA
D REIFOR_02804 motB; flagellar motor rotation protein MotB K02557 motB; chemotaxis protein MotB
D REIFOR_02159 motB; flagellar motor rotation protein MotB K02557 motB; chemotaxis protein MotB
D REIFOR_02171 outer membrane protein, OmpA/MotB family K02557 motB; chemotaxis protein MotB
D REIFOR_01398 motB; outer membrane protein, OmpA/MotB family K02557 motB; chemotaxis protein MotB
D REIFOR_03061 motB; outer membrane protein, OmpA/MotB family K02557 motB; chemotaxis protein MotB
D REIFOR_02615 outer membrane lipoprotein omp16 precursor K21218 motY; sodium-type flagellar protein MotY
D REIFOR_01654 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB
D REIFOR_01653 biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD
D REIFOR_01024 tolQ; proton channel protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D REIFOR_01025 tolR; Tol biopolymer transport system, TolR protein K03560 tolR; biopolymer transport protein TolR
D REIFOR_01593 crcB; camphor resistance CrcB protein K06199 crcB; fluoride exporter
D REIFOR_02208 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D REIFOR_00820 TonB-dependent receptor K16092 btuB; vitamin B12 transporter
D REIFOR_00304 type I secretion outer membrane protein, TolC precursor K12340 tolC; outer membrane protein
D REIFOR_00244 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D REIFOR_00943 outer membrane protein assembly factor YaeT precursor K07277 SAM50; outer membrane protein insertion porin family
D REIFOR_02045 yfgL; outer membrane protein YfgL, lipoprotein component of the protein assembly complex K17713 bamB; outer membrane protein assembly factor BamB
D REIFOR_00425 comL; competence protein ComL K05807 bamD; outer membrane protein assembly factor BamD
D REIFOR_02899 smpA; outer membrane lipoprotein SmpA K06186 bamE; outer membrane protein assembly factor BamE
D REIFOR_03011 outer membrane protein / bacterial surface antigen K07278 tamA; translocation and assembly module TamA
D REIFOR_03010 hypothetical protein K09800 tamB; translocation and assembly module TamB
D REIFOR_02388 lptA; LptA, protein essential for LPS transport across the periplasm K09774 lptA; lipopolysaccharide export system protein LptA
D REIFOR_02387 lptC; lipopolysaccharide-assembly protein LptC K11719 lptC; lipopolysaccharide export system protein LptC
D REIFOR_00451 organic solvent tolerance protein K04744 lptD; LPS-assembly protein
D REIFOR_02409 corC; magnesium and cobalt efflux protein CorC K06189 corC; hemolysin (HlyC) family protein
D REIFOR_02975 lrgA; putative effector of murein hydrolase LrgA K06518 cidA; holin-like protein
D REIFOR_01550 RND multidrug efflux transporter / acriflavin resistance protein K18989 vexF; multidrug efflux pump
D REIFOR_02073 rarD; membrane protein RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D REIFOR_02286 rarD; RarD protein, DMT superfamily transporter K05786 rarD; chloramphenicol-sensitive protein RarD
D REIFOR_01901 betT; high-affinity choline uptake protein BetT K05020 opuD; glycine betaine transporter
D REIFOR_02385 K+-dependent Na+/Ca+ exchanger related protein-protein K07301 yrbG; cation:H+ antiporter
D REIFOR_00757 Na+/H+ antiporter, NhaA type K03313 nhaA; Na+:H+ antiporter, NhaA family
D REIFOR_02308 kefC; glutathione-regulated potassium-efflux system protein KefC K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D REIFOR_00312 trkH; potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein
D REIFOR_03302 trkH; potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein
D REIFOR_03303 potassium transporter peripheral membrane protein K03499 trkA; trk/ktr system potassium uptake protein
D REIFOR_01895 chloride channel protein K03281 clcA; chloride channel protein, CIC family
D REIFOR_02062 sulfate permease K03321 TC.SULP; sulfate permease, SulP family
D REIFOR_02072 sulfate permease K03321 TC.SULP; sulfate permease, SulP family
D REIFOR_02307 sulfate permease K03321 TC.SULP; sulfate permease, SulP family
D REIFOR_02334 siaP; TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate transporter K11688 dctP; C4-dicarboxylate-binding protein DctP
D REIFOR_02333 siaQ; TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D REIFOR_02332 siaM; TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D REIFOR_00989 dctM; TRAP-type C4-dicarboxylate transport system, large permease component DctM K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D REIFOR_00182 dctM; TRAP-type C4-dicarboxylate transport system, large permease component DctM, unknown substrate 5 K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D REIFOR_00066 dctM; TRAP-type C4-dicarboxylate transport system, large permease component DctM K21393 yiaN; TRAP-type transport system large permease protein
D REIFOR_00526 dctP; TRAP-type C4-dicarboxylate transport system, periplasmic component DctP K21395 yiaO; TRAP-type transport system periplasmic protein
D REIFOR_02523 dctP; TRAP-type C4-dicarboxylate transport system, periplasmic component DctP K21395 yiaO; TRAP-type transport system periplasmic protein
D REIFOR_00067 dctP; TRAP-type C4-dicarboxylate transport system, periplasmic component DctP K21395 yiaO; TRAP-type transport system periplasmic protein
D REIFOR_00987 dctP; TRAP-type C4-dicarboxylate transport system, periplasmic component DctP K21395 yiaO; TRAP-type transport system periplasmic protein
D REIFOR_01296 arsenical-resistance protein ACR3 K03325 ACR3; arsenite transporter
D REIFOR_00408 murJ; putative peptidoglycan lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D REIFOR_00239 putative AEC family malate permease K13936 mdcF; malonate transporter and related proteins
D REIFOR_01070 auxin efflux carrier K13936 mdcF; malonate transporter and related proteins
D REIFOR_02588 auxin efflux carrier K24180 mleP; malate permease and related proteins
D REIFOR_00850 lysE; lysine transporter LysE K06895 lysE; L-lysine exporter family protein LysE/ArgO
D REIFOR_03333 rhtB; threonine transporter RhtB K05834 rhtB; homoserine/homoserine lactone efflux protein
D REIFOR_03286 threonine efflux protein K05835 rhtC; threonine efflux protein
D REIFOR_02358 azlC; branched-chain amino acid permease AzlC (azaleucine resistance) K26605 azlC; branched chain amino acid efflux pump
D REIFOR_02357 azlD; branched-chain amino acid permease AzlD K26606 azlD; branched chain amino acid efflux pump
D REIFOR_02475 tctA; tricarboxylate transport membrane protein TctA K07793 tctA; putative tricarboxylic transport membrane protein
D REIFOR_00156 tctA; tricarboxylate transport membrane protein TctA K07793 tctA; putative tricarboxylic transport membrane protein
D REIFOR_02474 tctB; tricarboxylate transport membrane protein TctB K07794 tctB; putative tricarboxylic transport membrane protein
D REIFOR_00157 tctB; tricarboxylate transport protein TctB K07794 tctB; putative tricarboxylic transport membrane protein
D REIFOR_00158 tctC; tricarboxylate transport protein TctC K07795 tctC; putative tricarboxylic transport membrane protein
D REIFOR_02473 tctC; tricarboxylate transport protein TctC K07795 tctC; putative tricarboxylic transport membrane protein
D REIFOR_01036 putative permease, PerM family K03548 perM; putative permease
D REIFOR_01179 transcriptional regulator, MarC family K05595 marC; multiple antibiotic resistance protein
D REIFOR_02245 multiple antibiotic resistance (MarC)-like protein K05595 marC; multiple antibiotic resistance protein
D REIFOR_02672 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D REIFOR_02940 PQ loop superfamily protein K15383 K15383; MtN3 and saliva related transmembrane protein
D REIFOR_02873 TonB family C-terminal domain protein K03832 tonB; periplasmic protein TonB
D REIFOR_01028 18K peptidoglycan-associated outer membrane lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D REIFOR_01027 tolB; TolB protein precursor, periplasmic protein K03641 tolB; TolB protein
D REIFOR_00982 oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D REIFOR_00981 oxaloacetate decarboxylase alpha chain K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D REIFOR_00980 oxaloacetate decarboxylase gamma chain K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D REIFOR_02949 hlyD; RTX secretion protein D / HlyD family secretion protein K11003 hlyD; membrane fusion protein, hemolysin D
D REIFOR_00761 RTX secretion protein D / HlyD family secretion protein K11003 hlyD; membrane fusion protein, hemolysin D
D REIFOR_01170 toxin secretion, membrane-fusion protein K13408 cvaA; membrane fusion protein
D REIFOR_01551 efflux transporter, RND family, MFP subunit K18990 vexE; membrane fusion protein, multidrug efflux system
D REIFOR_00246 polysaccharide biosynthesis protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D REIFOR_00245 lipopolysaccharide biosynthesis chain length determinant protein K25590 epsF; protein tyrosine kinase modulator
D REIFOR_01805 feoA; ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D REIFOR_01804 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D REIFOR_00543 tryptophan-rich sensory protein, TspO/MBR family K05770 TSPO; translocator protein
D REIFOR_02008 ccmF; cytochrome c heme lyase subunit CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D REIFOR_02789 5-hydroxyisourate hydrolase (HIUase) K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
C 02044 Secretion system [BR:rfo02044]
D REIFOR_02950 type I secretion system ATPase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D REIFOR_00675 toxin RTX-I translocation ATP-binding protein K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D REIFOR_00760 RTX toxin transporter, ATP-binding protein / leukotoxin translocation protein LktB / peptidase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D REIFOR_02543 RTX transport protein B, peptidase family S1C K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D REIFOR_02949 hlyD; RTX secretion protein D / HlyD family secretion protein K11003 hlyD; membrane fusion protein, hemolysin D
D REIFOR_00761 RTX secretion protein D / HlyD family secretion protein K11003 hlyD; membrane fusion protein, hemolysin D
D REIFOR_00304 type I secretion outer membrane protein, TolC precursor K12340 tolC; outer membrane protein
D REIFOR_01170 toxin secretion, membrane-fusion protein K13408 cvaA; membrane fusion protein
D REIFOR_01173 toxin secretion ABC transporter ATP-binding protein subunit/permease / peptidase, family C39 K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D REIFOR_02966 toxin secretion ABC transporter ATP-binding protein subunit/permease K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D REIFOR_01877 general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D REIFOR_01876 general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D REIFOR_01626 general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D REIFOR_02702 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D REIFOR_01625 general secretion pathway protein F K02455 gspF; general secretion pathway protein F
D REIFOR_01624 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D REIFOR_01623 general secretion pathway protein H K02457 gspH; general secretion pathway protein H
D REIFOR_01622 general secretion pathway protein I K02458 gspI; general secretion pathway protein I
D REIFOR_01621 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D REIFOR_01620 general secretion pathway protein K K02460 gspK; general secretion pathway protein K
D REIFOR_01619 general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D REIFOR_01618 general secretion pathway protein M K02462 gspM; general secretion pathway protein M
D REIFOR_01878 type II secretion system (T2SS) protein K02463 gspN; general secretion pathway protein N
D REIFOR_02659 leader peptidase (prepilin peptidase), A24A family K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D REIFOR_02655 fimbrial protein precursor (pilin) K02650 pilA; type IV pilus assembly protein PilA
D REIFOR_02656 pilA; type IV pilin PilA K02650 pilA; type IV pilus assembly protein PilA
D REIFOR_02657 pilB; type IV fimbrial assembly, ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D REIFOR_02658 pilC; type IV fimbrial assembly protein PilC K02653 pilC; type IV pilus assembly protein PilC
D REIFOR_00419 pilE; type IV pilus biogenesis protein PilE K02655 pilE; type IV pilus assembly protein PilE
D REIFOR_02049 pilF; type IV pilus biogenesis protein PilF K02656 pilF; type IV pilus assembly protein PilF
D REIFOR_02871 pilG; twitching motility protein PilG K02657 pilG; twitching motility two-component system response regulator PilG
D REIFOR_02870 pilH; twitching motility protein PilH K02658 pilH; twitching motility two-component system response regulator PilH
D REIFOR_02630 response regulator with CheY-like receiver domain protein K02658 pilH; twitching motility two-component system response regulator PilH
D REIFOR_01866 pilH; twitching motility protein PilH K02658 pilH; twitching motility two-component system response regulator PilH
D REIFOR_02869 pilI; type IV pili signal transduction protein PilI K02659 pilI; twitching motility protein PilI
D REIFOR_01867 chemotaxis signal transduction protein CheW-like protein K02659 pilI; twitching motility protein PilI
D REIFOR_02868 pilJ; type IV pilus biogenesis protein PilJ K02660 pilJ; twitching motility protein PilJ
D REIFOR_01869 methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D REIFOR_02867 pilK; methyltransferase PilK K02661 pilK; type IV pilus assembly protein PilK
D REIFOR_00489 pilM; type IV pilus biogenesis protein PilM K02662 pilM; type IV pilus assembly protein PilM
D REIFOR_00490 pilN; type IV pilus biogenesis protein PilN K02663 pilN; type IV pilus assembly protein PilN
D REIFOR_00491 pilO; type IV pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO
D REIFOR_00492 pilP; type IV pilus biogenesis protein PilP K02665 pilP; type IV pilus assembly protein PilP
D REIFOR_00493 pilQ; type IV pilus biogenesis protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D REIFOR_00326 pilT; twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D REIFOR_00327 pilU; twitching motility protein PilU K02670 pilU; twitching motility protein PilU
D REIFOR_00414 pilV; type IV fimbrial biogenesis protein PilV K02671 pilV; type IV pilus assembly protein PilV
D REIFOR_00415 pilW; type IV fimbrial biogenesis protein PilW K02672 pilW; type IV pilus assembly protein PilW
D REIFOR_00416 pilX; type IV fimbrial biogenesis protein PilX K02673 pilX; type IV pilus assembly protein PilX
D REIFOR_00417 pilY1; type IV fimbrial biogenesis protein PilY1 K02674 pilY1; type IV pilus assembly protein PilY1
D REIFOR_01634 pilZ; type IV pilus biogenesis protein PilZ K02676 pilZ; type IV pilus assembly protein PilZ
D REIFOR_01717 hypothetical protein K27041 fimL; scaffold protein FimL
D REIFOR_00413 fimbrial pilin-related protein K08084 fimT; type IV fimbrial biogenesis protein FimT
D REIFOR_00420 fimT; type IV fimbrial biogenesis protein FimT K08084 fimT; type IV fimbrial biogenesis protein FimT
D REIFOR_01990 peptidoglycan binding protein LysM, CBM50 family K08086 fimV; pilus assembly protein FimV
D REIFOR_02608 mshA; MSHA pilin protein MshA K10924 mshA; MSHA pilin protein MshA
D REIFOR_02609 mshC; MSHA pilin protein MshC K10926 mshC; MSHA pilin protein MshC
D REIFOR_02610 mshD; MSHA pilin protein MshD K10927 mshD; MSHA pilin protein MshD
D REIFOR_02836 mshE; MSHA biogenesis protein MshE K12276 mshE; MSHA biogenesis protein MshE
D REIFOR_02837 mshG; MSHA biogenesis protein MshG K12278 mshG; MSHA biogenesis protein MshG
D REIFOR_02829 mshI; MSHA biogenesis protein MshI K12279 mshI; MSHA biogenesis protein MshI
D REIFOR_02831 mshJ; MSHA biogenesis protein MshJ K12280 mshJ; MSHA biogenesis protein MshJ
D REIFOR_02833 mshL; MSHA biogenesis protein MshL K12282 mshL; MSHA biogenesis protein MshL
D REIFOR_02834 mshM; MSHA biogenesis protein MshM K12283 mshM; MSHA biogenesis protein MshM
D REIFOR_02835 mshN; MSHA biogenesis protein MshN K12284 mshN; MSHA biogenesis protein MshN
D REIFOR_02611 mshO; MSHA biogenesis protein MshO K12285 mshO; MSHA biogenesis protein MshO
D REIFOR_02613 mshQ; MSHA biogenesis protein MshQ / carbohydrate-binding protein, CBM16 family K12287 mshQ; MSHA biogenesis protein MshQ
D REIFOR_00323 yggT; integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) K02221 yggT; YggT family protein
D REIFOR_02265 DNA uptake protein K02237 comEA; competence protein ComEA
D REIFOR_02174 dedD; cell division protein DedD K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D REIFOR_01655 DNA internalization-related protein competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D REIFOR_02168 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D REIFOR_01533 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D REIFOR_02015 FlhB domain protein K04061 flhB2; flagellar biosynthesis protein
D REIFOR_01517 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D REIFOR_01519 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D REIFOR_01520 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D REIFOR_01528 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D REIFOR_01529 fliO; flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D REIFOR_01530 fliP; flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D REIFOR_01531 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D REIFOR_01532 fliR; flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D REIFOR_00138 conserved hypothetical membrane protein K11891 impL; type VI secretion system protein ImpL
D REIFOR_00137 type IV / VI secretion system protein, DotU family K11892 impK; type VI secretion system protein ImpK
D REIFOR_00136 type VI secretion protein family K11893 impJ; type VI secretion system protein ImpJ
D REIFOR_00143 hypothetical protein K11895 impH; type VI secretion system protein ImpH
D REIFOR_00142 type VI secretion system K11896 impG; type VI secretion system protein ImpG
D REIFOR_00133 impC; uncharraterized protein ImpC K11900 impC; type VI secretion system protein ImpC
D REIFOR_00139 vipB; type VI secretion protein VipB K11900 impC; type VI secretion system protein ImpC
D REIFOR_00132 impB; uncharacterized protein ImpB K11901 impB; type VI secretion system protein ImpB
D REIFOR_00134 type VI secretion system effector, Hcp family K11903 hcp; type VI secretion system secreted protein Hcp
D REIFOR_02663 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D REIFOR_00886 secB; preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB
D REIFOR_02770 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D REIFOR_03132 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D REIFOR_02771 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D REIFOR_00477 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D REIFOR_00354 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D REIFOR_02206 signal recognition particle, subunit Ffh SRP54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D REIFOR_00458 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D REIFOR_02769 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D REIFOR_03347 yidC; inner membrane protein translocase component YidC, long form K03217 yidC; YidC/Oxa1 family membrane protein insertase
D REIFOR_00088 tatA; twin-arginine translocation protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D REIFOR_00089 tatB; twin-arginine translocation protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D REIFOR_00090 tatC; twin-arginine translocation protein TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:rfo02042]
D REIFOR_02208 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D REIFOR_02337 hemolysin D K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:rfo02022]
D REIFOR_00376 phoR; phosphate regulon sensor protein PhoR (SphS) K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D REIFOR_00377 phoB; phosphate regulon transcriptional regulatory protein PhoB (SphR) K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D REIFOR_02191 phoQ; two-component system sensor histidine kinase PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D REIFOR_02192 two-component system response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP
D REIFOR_01210 rstA; transcriptional regulatory protein RstA K07661 rstA; two-component system, OmpR family, response regulator RstA
D REIFOR_03183 cpxA; copper sensory histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D REIFOR_03182 cpxR; copper-sensing two-component system response regulator CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D REIFOR_03110 baeS; sensory histidine kinase BaeS K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D REIFOR_03109 baeR; response regulator BaeR K07664 baeR; two-component system, OmpR family, response regulator BaeR
D REIFOR_00655 transcriptional regulator K02483 K02483; two-component system, OmpR family, response regulator
D REIFOR_00741 two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D REIFOR_03256 cpxR; transcriptional regulatory protein CpxR K02483 K02483; two-component system, OmpR family, response regulator
D REIFOR_02483 gltR; DNA-binding protein response regulator GltR K02483 K02483; two-component system, OmpR family, response regulator
D REIFOR_02257 nitrate/nitrite response regulator protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D REIFOR_02256 nitrate/nitrite sensor protein K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D REIFOR_02219 barA; sensory histidine kinase BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D REIFOR_01696 uvrY; BarA-associated response regulator UvrY K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D REIFOR_00159 two-component system sensor histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]
D REIFOR_00515 alginate biosynthesis protein AlgZ/FimS K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D REIFOR_00516 alginate biosynthesis regulatory protein AlgR-like protein K08083 algR; two-component system, LytTR family, response regulator AlgR
D REIFOR_00835 ntrB; nitrogen regulation protein NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D REIFOR_00836 ntrC; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D REIFOR_00422 pilS; two-component system sensor histidine kinase PilS K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D REIFOR_00421 pilR; type IV fimbriae expression regulatory protein PilR K02667 pilR; two-component system, NtrC family, response regulator PilR
D REIFOR_02336 two-component system sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D REIFOR_03215 two-component system sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D REIFOR_02563 dctB; C4-dicarboxylate transport sensor protein DctB K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D REIFOR_02562 C4-dicarboxylate transport transcriptional regulatory protein K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D REIFOR_02335 two-component system response regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D REIFOR_03216 transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D REIFOR_02939 sensor histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D REIFOR_02162 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D REIFOR_01770 cheA; signal transduction sensor histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D REIFOR_02164 chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor component CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D REIFOR_01771 chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor component CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D REIFOR_02880 response regulator containng CheC-like domain protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D REIFOR_02161 cheB; chemotaxis response regulator protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D REIFOR_01765 cheB; chemotaxis response regulator protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D REIFOR_01084 putative methyltransferase / methylesterase K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D REIFOR_02138 cheW; chemotaxis protein CheW K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D REIFOR_02866 hybrid signal transduction sensor histidine kinase / response regulator K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D REIFOR_02871 pilG; twitching motility protein PilG K02657 pilG; twitching motility two-component system response regulator PilG
D REIFOR_02870 pilH; twitching motility protein PilH K02658 pilH; twitching motility two-component system response regulator PilH
D REIFOR_02630 response regulator with CheY-like receiver domain protein K02658 pilH; twitching motility two-component system response regulator PilH
D REIFOR_01866 pilH; twitching motility protein PilH K02658 pilH; twitching motility two-component system response regulator PilH
D REIFOR_02865 cheB; chemotaxis response regulator protein-glutamatemethylesterase CheB K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase)
D REIFOR_01514 fleS; flagellar sensor histidine kinase FleS K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D REIFOR_01515 fleR; sigma-54 dependent transcriptional regulator / response regulator FleR K10943 flrC; two-component system, response regulator FlrC
D REIFOR_01627 dhkJ; histidine kinase DhkJ K20973 sagS; two-component system, sensor histidine kinase SagS [EC:2.7.13.3]
D REIFOR_01524 Hpt domain protein K20976 hptB; histidine phosphotransfer protein HptB
D REIFOR_01523 cheY; chemotaxis protein CheY K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator
D REIFOR_01150 nitrate ABC transporter, nitrate-binding protein K22067 nasS; two-component system, oxyanion-binding sensor
D REIFOR_01151 nasT; response regulator NasT K07183 nasT; two-component system, response regulator / RNA-binding antiterminator
D REIFOR_00839 GGDEF domain protein K20971 ladS; two-component system, sensor histidine kinase LadS
D REIFOR_02700 hybrid signal transduction sensor histidine kinase / response regulator K20972 retS; two-component system, sensor histidine kinase RetS
C 02035 Bacterial motility proteins [BR:rfo02035]
D REIFOR_02162 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D REIFOR_01770 cheA; signal transduction sensor histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D REIFOR_02155 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D REIFOR_02156 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW
D REIFOR_03112 cheW; positive regulator of CheA protein activity (CheW) K03408 cheW; purine-binding chemotaxis protein CheW
D REIFOR_01769 cheW; positive regulator of CheA protein activity (CheW) K03408 cheW; purine-binding chemotaxis protein CheW
D REIFOR_01766 cheD; chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D REIFOR_01135 CheR-type MCP methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D REIFOR_02137 cheR; chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D REIFOR_01767 cehR; chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D REIFOR_02161 cheB; chemotaxis response regulator protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D REIFOR_01765 cheB; chemotaxis response regulator protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D REIFOR_01084 putative methyltransferase / methylesterase K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D REIFOR_02164 chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor component CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D REIFOR_01771 chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor component CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D REIFOR_02880 response regulator containng CheC-like domain protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D REIFOR_02163 cheZ; chemotaxis response - phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ
D REIFOR_02138 cheW; chemotaxis protein CheW K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D REIFOR_00923 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D REIFOR_01768 methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D REIFOR_01773 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D REIFOR_00226 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D REIFOR_01519 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D REIFOR_01520 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D REIFOR_01521 fliJ; flagellar protein FliJ K02413 fliJ; flagellar protein FliJ
D REIFOR_01529 fliO; flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D REIFOR_01530 fliP; flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D REIFOR_01531 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D REIFOR_01532 fliR; flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D REIFOR_02168 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D REIFOR_01533 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D REIFOR_01518 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D REIFOR_01527 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D REIFOR_01528 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D REIFOR_01517 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D REIFOR_02129 flgI; flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D REIFOR_02139 flgA; flagellar basal-body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D REIFOR_02130 flgH; flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D REIFOR_01526 fliL; flagellar biosynthesis protein FliL K02415 fliL; flagellar protein FliL
D REIFOR_00036 fliL; flagellar biosynthesis protein FliL K02415 fliL; flagellar protein FliL
D REIFOR_01516 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D REIFOR_01525 fliK; flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D REIFOR_02136 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D REIFOR_02135 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D REIFOR_02134 flgD; flagellar basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D REIFOR_02132 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D REIFOR_02131 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D REIFOR_02128 flgJ; flagellar protein FlgJ [peptidoglycan hydrolase], GH73 family K02395 flgJ; peptidoglycan hydrolase FlgJ
D REIFOR_02133 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D REIFOR_02127 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D REIFOR_02126 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D REIFOR_00445 hypothetical protein K09860 flgP; outer membrane protein FlgP
D REIFOR_02615 outer membrane lipoprotein omp16 precursor K21218 motY; sodium-type flagellar protein MotY
D REIFOR_00609 flaB; flagellin protein FlaB K02406 fliC; flagellin
D REIFOR_02124 flagellin domain protein K02406 fliC; flagellin
D REIFOR_01511 fliS; flagellar biosynthesis protein FliS K02422 fliS; flagellar secretion chaperone FliS
D REIFOR_02165 RNA polymerase sigma 70 K02405 fliA; RNA polymerase sigma factor FliA
D REIFOR_02805 pomA; flagellar motor protein PomA K02556 motA; chemotaxis protein MotA
D REIFOR_02160 motA; flagellar motor rotation protein MotA K02556 motA; chemotaxis protein MotA
D REIFOR_02804 motB; flagellar motor rotation protein MotB K02557 motB; chemotaxis protein MotB
D REIFOR_02159 motB; flagellar motor rotation protein MotB K02557 motB; chemotaxis protein MotB
D REIFOR_02171 outer membrane protein, OmpA/MotB family K02557 motB; chemotaxis protein MotB
D REIFOR_01398 motB; outer membrane protein, OmpA/MotB family K02557 motB; chemotaxis protein MotB
D REIFOR_03061 motB; outer membrane protein, OmpA/MotB family K02557 motB; chemotaxis protein MotB
D REIFOR_01513 fleQ; flagellar regulatory protein FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D REIFOR_01514 fleS; flagellar sensor histidine kinase FleS K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D REIFOR_01515 fleR; sigma-54 dependent transcriptional regulator / response regulator FleR K10943 flrC; two-component system, response regulator FlrC
D REIFOR_02140 glgM; negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D REIFOR_02123 flaG; flagellin protein FlaG K06603 flaG; flagellar protein FlaG
D REIFOR_02167 flhF; flagellar biosynthesis protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D REIFOR_02166 fleN; flagellar synthesis regulator FleN K04562 flhG; flagellar biosynthesis protein FlhG
D REIFOR_02871 pilG; twitching motility protein PilG K02657 pilG; twitching motility two-component system response regulator PilG
D REIFOR_02870 pilH; twitching motility protein PilH K02658 pilH; twitching motility two-component system response regulator PilH
D REIFOR_02630 response regulator with CheY-like receiver domain protein K02658 pilH; twitching motility two-component system response regulator PilH
D REIFOR_01866 pilH; twitching motility protein PilH K02658 pilH; twitching motility two-component system response regulator PilH
D REIFOR_02869 pilI; type IV pili signal transduction protein PilI K02659 pilI; twitching motility protein PilI
D REIFOR_01867 chemotaxis signal transduction protein CheW-like protein K02659 pilI; twitching motility protein PilI
D REIFOR_02868 pilJ; type IV pilus biogenesis protein PilJ K02660 pilJ; twitching motility protein PilJ
D REIFOR_01869 methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D REIFOR_02867 pilK; methyltransferase PilK K02661 pilK; type IV pilus assembly protein PilK
D REIFOR_02866 hybrid signal transduction sensor histidine kinase / response regulator K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D REIFOR_00421 pilR; type IV fimbriae expression regulatory protein PilR K02667 pilR; two-component system, NtrC family, response regulator PilR
D REIFOR_00422 pilS; two-component system sensor histidine kinase PilS K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D REIFOR_00326 pilT; twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D REIFOR_00327 pilU; twitching motility protein PilU K02670 pilU; twitching motility protein PilU
D REIFOR_02865 cheB; chemotaxis response regulator protein-glutamatemethylesterase CheB K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase)
D REIFOR_02864 hypothetical protein K06598 chpC; chemosensory pili system protein ChpC
D REIFOR_02655 fimbrial protein precursor (pilin) K02650 pilA; type IV pilus assembly protein PilA
D REIFOR_02656 pilA; type IV pilin PilA K02650 pilA; type IV pilus assembly protein PilA
D REIFOR_02657 pilB; type IV fimbrial assembly, ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D REIFOR_02658 pilC; type IV fimbrial assembly protein PilC K02653 pilC; type IV pilus assembly protein PilC
D REIFOR_02659 leader peptidase (prepilin peptidase), A24A family K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D REIFOR_02049 pilF; type IV pilus biogenesis protein PilF K02656 pilF; type IV pilus assembly protein PilF
D REIFOR_00493 pilQ; type IV pilus biogenesis protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D REIFOR_00492 pilP; type IV pilus biogenesis protein PilP K02665 pilP; type IV pilus assembly protein PilP
D REIFOR_00491 pilO; type IV pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO
D REIFOR_00490 pilN; type IV pilus biogenesis protein PilN K02663 pilN; type IV pilus assembly protein PilN
D REIFOR_00489 pilM; type IV pilus biogenesis protein PilM K02662 pilM; type IV pilus assembly protein PilM
D REIFOR_01634 pilZ; type IV pilus biogenesis protein PilZ K02676 pilZ; type IV pilus assembly protein PilZ
D REIFOR_00414 pilV; type IV fimbrial biogenesis protein PilV K02671 pilV; type IV pilus assembly protein PilV
D REIFOR_00415 pilW; type IV fimbrial biogenesis protein PilW K02672 pilW; type IV pilus assembly protein PilW
D REIFOR_00416 pilX; type IV fimbrial biogenesis protein PilX K02673 pilX; type IV pilus assembly protein PilX
D REIFOR_00417 pilY1; type IV fimbrial biogenesis protein PilY1 K02674 pilY1; type IV pilus assembly protein PilY1
D REIFOR_00419 pilE; type IV pilus biogenesis protein PilE K02655 pilE; type IV pilus assembly protein PilE
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:rfo04812]
D REIFOR_03313 hypothetical protein K06990 MEMO1; MEMO1 family protein
D REIFOR_02296 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D REIFOR_02666 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D REIFOR_02667 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D REIFOR_02648 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D REIFOR_02649 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D REIFOR_02650 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D REIFOR_02158 cobyric acid synthase K03496 parA; chromosome partitioning protein
D REIFOR_00039 cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D REIFOR_00196 parA; chromosome (plasmid) partitioning protein ParA K03496 parA; chromosome partitioning protein
D REIFOR_00197 parB; chromosome (plasmid) partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:rfo04147]
D REIFOR_01571 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
D REIFOR_00955 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D REIFOR_02042 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D REIFOR_01277 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D REIFOR_02259 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D REIFOR_03213 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D REIFOR_02102 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D REIFOR_02282 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D REIFOR_01900 peptidase, M19 family K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D REIFOR_00866 peroxidase K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D REIFOR_01934 groEL; heat shock protein 60 family chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D REIFOR_02894 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D REIFOR_02606 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D REIFOR_02023 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D REIFOR_03121 translation elongation factor Tu K02358 tuf; elongation factor Tu
D REIFOR_00087 HIT family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D REIFOR_02079 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D REIFOR_02170 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D REIFOR_01502 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D REIFOR_00060 S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D REIFOR_01873 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D REIFOR_00514 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D REIFOR_00837 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D REIFOR_02504 pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D REIFOR_00207 fructose-1,6-bisphosphatase, type I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D REIFOR_02114 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D REIFOR_03119 1,4-alpha-glucan (glycogen) branching enzyme, CBM48, GH13 family K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D REIFOR_00637 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D REIFOR_00885 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_00605 glutamine synthetase family protein, putative glutamate-putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_00607 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_02309 glnN; glutamine synthetase type III, GlnN K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D REIFOR_00082 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D REIFOR_02040 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D REIFOR_02749 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D REIFOR_00924 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D REIFOR_00224 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D REIFOR_02476 D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D REIFOR_02698 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D REIFOR_01566 dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_01880 dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D REIFOR_01629 electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D REIFOR_02280 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D REIFOR_00476 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:rfo02048]
D REIFOR_01931 DEAD/DEAH box helicase K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D REIFOR_01928 type I restriction-modification system, specificity subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D REIFOR_01929 type I restriction-modification system, DNA-methyltransferase subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D REIFOR_00648 HipA domain protein-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D REIFOR_01824 HipA domain protein-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D REIFOR_00049 pspC; phage shock protein C, PspC K03973 pspC; phage shock protein C
D REIFOR_00048 pspB; phage shock protein B, PspB K03970 pspB; phage shock protein B
D REIFOR_01814 VapC toxin protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D REIFOR_01815 VapB protein (antitoxin to VapC) K18829 mvpT; antitoxin VapB
D REIFOR_02666 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D REIFOR_02296 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D REIFOR_00503 topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D REIFOR_00300 topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D REIFOR_01978 glutamyl-tRNA synthetase / glutamyl-tRNA(Gln) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D REIFOR_02230 hypothetical protein K19168 cptA; toxin CptA
D REIFOR_02231 hypothetical protein K09159 cptB; antitoxin CptB
D REIFOR_02059 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors [BR:rfo04030]
D REIFOR_00373 proteorhodopsin K04643 sop; sensory rhodopsin
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:rfo01504]
D REIFOR_01944 MFS transporter, putative bacilysin exporter BacE K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D REIFOR_00068 pentapeptide repeat protein family protein K18555 qnr; fluoroquinolone resistance protein
D REIFOR_01226 peptidase, M15B family K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D REIFOR_02191 phoQ; two-component system sensor histidine kinase PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D REIFOR_02192 two-component system response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP
D REIFOR_00304 type I secretion outer membrane protein, TolC precursor K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:rfo00537]
D REIFOR_01900 peptidase, M19 family K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:rfo03100]
D REIFOR_01977 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D REIFOR_02369 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D REIFOR_03142 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D REIFOR_01507 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D REIFOR_00977 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D REIFOR_00978 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D REIFOR_01671 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D REIFOR_01048 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D REIFOR_01049 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D REIFOR_00991 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D REIFOR_00992 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D REIFOR_00994 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D REIFOR_00996 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D REIFOR_01692 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D REIFOR_01079 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D REIFOR_01080 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D REIFOR_01168 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D REIFOR_02172 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D REIFOR_01169 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D REIFOR_01693 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D REIFOR_03135 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D REIFOR_01670 tRNA-His K14226 tRNA-His; tRNA His
D REIFOR_02370 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D REIFOR_03143 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D REIFOR_00393 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D REIFOR_02765 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D REIFOR_01031 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D REIFOR_01032 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D REIFOR_00479 tRNA-Met K14230 tRNA-Met; tRNA Met
D REIFOR_00580 tRNA-Met K14230 tRNA-Met; tRNA Met
D REIFOR_02578 tRNA-Met K14230 tRNA-Met; tRNA Met
D REIFOR_01081 tRNA-Met K14230 tRNA-Met; tRNA Met
D REIFOR_02730 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D REIFOR_01672 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D REIFOR_01970 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D REIFOR_02266 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D REIFOR_02267 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D REIFOR_00976 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D REIFOR_03134 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D REIFOR_00372 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D REIFOR_03133 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D REIFOR_03136 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D REIFOR_00990 tRNA-Val K14237 tRNA-Val; tRNA Val
D REIFOR_00993 tRNA-Val K14237 tRNA-Val; tRNA Val
D REIFOR_00995 tRNA-Val K14237 tRNA-Val; tRNA Val
D REIFOR_01127 tRNA-Val K14237 tRNA-Val; tRNA Val
D REIFOR_00437 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D REIFOR_00438 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D REIFOR_03165 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D REIFOR_00439 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D REIFOR_02090 signal recognition particle RNA K01983 ffs; SRP RNA
D REIFOR_02681 bacterial RNase P class A K01978 rnpB; M1 RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D REIFOR_02249 short chain dehydrogenase/reductase family protein K16216 yueD; benzil reductase ((S)-benzoin forming) [EC:1.1.1.320]
D REIFOR_02496 3-hydroxyisobutyrate dehydrogenase K08319 ltnD; L-threonate 2-dehydrogenase [EC:1.1.1.411]
D REIFOR_02758 iolG; myo-inositol 2-dehydrogenase / glycoside hydrolase family K24995 E1.1.1.425; levoglucosan dehydrogenase [EC:1.1.1.425]
D REIFOR_03177 aryl-alcohol dehydrogenase K26057 smoB; 6-dehydroglucose reductase [EC:1.1.1.432]
D REIFOR_01337 L-glyceraldehyde 3-phosphate reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D REIFOR_01885 acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-]
D REIFOR_01884 TPP-dependent acetoin dehydrogenase complex, E1 protein subunit beta K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-]
D REIFOR_03111 putative oxidoreductase/short-chain dehydrogenase K11168 DHRS12; dehydrogenase/reductase SDR family member 12 [EC:1.1.-.-]
D REIFOR_00461 coniferyl aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D REIFOR_01776 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107]
D REIFOR_01288 2,4-dienoyl-CoA reductase (NADPH) K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D REIFOR_00805 pyrroloquinoline quinone (coenzyme PQQ) biosynthesis protein c K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11]
D REIFOR_01774 carboxynorspermidine dehydrogenase K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55]
D REIFOR_01631 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D REIFOR_03341 FAD dependent oxidoreductase K18208 RNLS; renalase [EC:1.6.3.5]
D REIFOR_03031 NADPH:quinone reductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D REIFOR_00222 FMN-dependent NADH-azoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D REIFOR_02710 msrA; peptide methionine sulfoxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D REIFOR_01060 methionine sulfoxide reductase B K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D REIFOR_00163 glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D REIFOR_00223 glutathione S-transferase, omega K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D REIFOR_00435 yedY; putative sulfite oxidase subunit YedY K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D REIFOR_01205 thioredoxin-dependent thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D REIFOR_01037 thiol peroxidase, Bcp-type K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D REIFOR_02748 thiol peroxidase, Tpx-type K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D REIFOR_00926 peroxiredoxin family protein/glutaredoxin K24157 prxII; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D REIFOR_02479 pirin K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D REIFOR_00728 ferredoxin--NADP(+) reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D REIFOR_01743 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D REIFOR_00826 pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D REIFOR_00960 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D REIFOR_02095 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D REIFOR_01945 coproporphyrinogen III oxidase K21936 chuW; anaerobilin synthase [EC:2.1.1.342]
D REIFOR_00852 maltose O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D REIFOR_02468 maltose O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D REIFOR_01395 cutE; apolipoprotein N-acyltransferase / copper homeostasis protein CutE K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D REIFOR_00008 N-acetyltransferase, GNAT family K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D REIFOR_01589 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D REIFOR_01980 transglutaminase K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D REIFOR_01588 arginine-tRNA-protein transferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D REIFOR_01508 putative cytoplasmic protein, DTW domain protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D REIFOR_02314 DTW domain protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D REIFOR_00190 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D REIFOR_01722 apbE; thiamin biosynthesis lipoprotein ApbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D REIFOR_01737 apbE; thiamin biosynthesis lipoprotein ApbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D REIFOR_01787 apbE; thiamin biosynthesis lipoprotein ApbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D REIFOR_02497 type III effector Hrp-dependent outer domain protein-containing protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217]
D REIFOR_00469 glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D REIFOR_03315 selenoprotein O and cysteine-containing-like protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D REIFOR_00290 4-hydroxybenzoyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D REIFOR_02534 putative metal-dependent phosphoesterase (PHP family) protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D REIFOR_02148 sixA; phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D REIFOR_03297 metal-dependent phosphohydrolase, HD superfamily K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D REIFOR_00053 putative deoxyribonuclease YcfH K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D REIFOR_00894 hydrolase, TatD family protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D REIFOR_02235 alpha/beta hydrolase family protein K01175 ybfF; esterase [EC:3.1.-.-]
D REIFOR_03306 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D REIFOR_02290 amidohydrolase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D REIFOR_01459 N-acetylglucosaminyl phosphatidylinositol deacetylase-related protein, CE14 family K01463 bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-]
D REIFOR_00626 hydroxydechloroatrazine ethylaminohydrolase K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32]
D REIFOR_01902 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D REIFOR_02703 adenylate cyclase, CYTH domain protein K18446 ygiF; triphosphatase [EC:3.6.1.25]
D REIFOR_01646 Maf/YceF/YhdE family protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D REIFOR_01982 ATPase, AAA family K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D REIFOR_00918 ATPase, AAA family K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D REIFOR_03040 conserved hypothetical protein, putative alpha/beta hydrolase family esterase K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D REIFOR_02498 ribulose-5-phosphate 4-epimerase K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104]
D REIFOR_00751 galactarate dehydratase K26399 K26399; arabinonate dehydratase [EC:4.2.1.5]
D REIFOR_00753 fucU; fucose operon FucU protein K02431 fucU; L-fucose mutarotase [EC:5.1.3.29]
D REIFOR_02499 hydroxypyruvate isomerase K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35]
D REIFOR_01828 cyanophycin synthase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D REIFOR_01430 rnfD; electron transport complex protein RnfD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D REIFOR_01431 rnfC; electron transport complex protein RnfC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D REIFOR_01432 rnfB; electron transport complex protein RnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D REIFOR_01728 Na(+)-translocating NADH-quinone reductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D REIFOR_01727 Na(+)-translocating NADH-quinone reductase subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D REIFOR_01726 Na(+)-translocating NADH-quinone reductase subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D REIFOR_01725 Na(+)-translocating NADH-quinone reductase subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D REIFOR_01724 Na(+)-translocating NADH-quinone reductase subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D REIFOR_01723 Na(+)-translocating NADH-quinone reductase subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D REIFOR_01009 ccoI; cytochrome cbb3 oxidase biogenesis protein CcoI / copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
C 99981 Carbohydrate metabolism
D REIFOR_00592 holH; inositol utilization protein H HolH K06605 iolH; myo-inositol catabolism protein IolH
D REIFOR_02329 CBS domain protein K04767 acuB; acetoin utilization protein AcuB
D REIFOR_01112 CBS domain protein K04767 acuB; acetoin utilization protein AcuB
C 99982 Energy metabolism
D REIFOR_00965 4Fe-4S ferredoxin K05524 fdxA; ferredoxin
D REIFOR_01429 rnfG; electron transport complex protein RnfG K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D REIFOR_01428 rnfE; electron transport complex protein RnfE K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D REIFOR_01433 rnfA; electron transport complex protein RnfA K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D REIFOR_02253 napD; periplasmic nitrate reductase NapD protein K02570 napD; periplasmic nitrate reductase NapD
D REIFOR_02254 napF; periplasmic nitrate reductase, ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF
D REIFOR_02255 napE; periplasmic nitrate reductase, NapE protein K02571 napE; periplasmic nitrate reductase NapE
D REIFOR_02250 napC; periplasmic nitrate reductase c-type cytochrome NapC K02569 napC; cytochrome c-type protein NapC
D REIFOR_01630 electron transfer flavoprotein, beta subunit K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D REIFOR_01794 glyoxylase I family protein K08234 yaeR; glyoxylase I family protein
D REIFOR_00325 PLP-binding protein domain protein-containing protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D REIFOR_01167 hypothetical protein K19804 lapB; lipopolysaccharide assembly protein B
C 99987 Cofactor metabolism
D REIFOR_00507 uncharacterized protein EC-HemY K02498 hemY; HemY protein
D REIFOR_00085 ubiB; ubiquinone biosynthesis monooxygenase UbiB K03688 ubiB; ubiquinone biosynthesis protein
D REIFOR_00084 yigP; protein YigP K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D REIFOR_03208 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
C 99988 Secondary metabolism
C 99999 Others
D REIFOR_01002 acyl-CoA synthetase (NDP forming) K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D REIFOR_01220 cspC; cold shock protein CspC K03704 cspA; cold shock protein
D REIFOR_00596 cspE; cold shock protein CspE K03704 cspA; cold shock protein
D REIFOR_00734 RNA chaperone/anti-terminator K03704 cspA; cold shock protein
D REIFOR_01584 cold-shock protein K03704 cspA; cold shock protein
D REIFOR_00037 anti-RNA polymerase sigma 70 factor K07740 rsd; regulator of sigma D
D REIFOR_00044 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2
D REIFOR_03207 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2
D REIFOR_00034 transcription accessory protein (S1 RNA-binding protein domain protein) K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D REIFOR_01585 clpS; ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D REIFOR_01669 cell division trigger factor K03545 tig; trigger factor
D REIFOR_00436 yedZ; putative sulfite oxidase subunit YedZ K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D REIFOR_00714 ureE; urease accessory protein UreE K03187 ureE; urease accessory protein
D REIFOR_00715 ureF; urease accessory protein UreF K03188 ureF; urease accessory protein
D REIFOR_00716 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein
D REIFOR_00710 ureD; urease accessory protein UreD K03190 ureD; urease accessory protein
D REIFOR_00717 ureJ; urease accessory protein UreJ K03192 ureJ; urease accessory protein
D REIFOR_02974 SsrA-binding protein K03664 smpB; SsrA-binding protein
D REIFOR_00621 hypC; [NiFe] hydrogenase metallocenter assembly protein HypC K04653 hypC; hydrogenase expression/formation protein HypC
D REIFOR_00620 hypD; [NiFe] hydrogenase metallocenter assembly protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D REIFOR_00619 hypE; [NiFe] hydrogenase metallocenter assembly protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D REIFOR_00622 hypF; [NiFe] hydrogenase metallocenter assembly protein HypF K04656 hypF; hydrogenase maturation protein HypF
D REIFOR_00176 magnesium chelatase family protein K07391 comM; magnesium chelatase family protein
D REIFOR_02918 2OG-Fe(II) oxygenase family oxidoreductase K07394 K07394; SM-20-related protein
D REIFOR_03312 thioredoxin domain protein K07396 K07396; putative protein-disulfide isomerase
D REIFOR_02704 osmotically inducible protein C K07397 yhfA; putative redox protein
D REIFOR_01263 amino acid ABC transporter substrate-binding protein K07400 nfuA; Fe/S biogenesis protein NfuA
D REIFOR_02792 xdhC; XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase) K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D REIFOR_00006 methylated-DNA-(protein)-cysteine S-methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D REIFOR_03230 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC
D REIFOR_00213 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D REIFOR_02684 hypothetical protein K07460 yraN; putative endonuclease
D REIFOR_00189 excinuclease ABC subunit C K07461 K07461; putative endonuclease
D REIFOR_03308 DNA processing chain A K04096 smf; DNA processing protein
D REIFOR_01592 rarA; recombination factor protein RarA K07478 ycaJ; putative ATPase
D REIFOR_01923 transposase, IS4-like protein K07481 K07481; transposase, IS5 family
D REIFOR_01485 transposase, IS3 family K07483 K07483; transposase
D REIFOR_01473 transposase, IS3 family K07483 K07483; transposase
D REIFOR_01481 transposase K07483 K07483; transposase
D REIFOR_00676 transposase, IS3 family K07483 K07483; transposase
D REIFOR_01483 transposase, IS3 family K07483 K07483; transposase
D REIFOR_00687 transposase family K07486 K07486; transposase
D REIFOR_00701 transposase family K07486 K07486; transposase
D REIFOR_02731 transposase-like protein K07491 rayT; REP-associated tyrosine transposase
D REIFOR_01850 integrase K07497 K07497; putative transposase
D REIFOR_01854 transposase, IS3 family K07497 K07497; putative transposase
D REIFOR_02016 integrase K07497 K07497; putative transposase
D REIFOR_02018 integrase K07497 K07497; putative transposase
D REIFOR_02034 transposase, IS3 family K07497 K07497; putative transposase
D REIFOR_01231 integrase K07497 K07497; putative transposase
D REIFOR_01242 transposase K07497 K07497; putative transposase
D REIFOR_01410 integrase K07497 K07497; putative transposase
D REIFOR_01474 integrase K07497 K07497; putative transposase
D REIFOR_01475 transposase, IS3 family K07497 K07497; putative transposase
D REIFOR_00677 integrase K07497 K07497; putative transposase
D REIFOR_01482 transposase-like protein K07497 K07497; putative transposase
D REIFOR_01484 integrase K07497 K07497; putative transposase
D REIFOR_01486 insertion element uncharacterized 39.2 kDa protein K07497 K07497; putative transposase
D REIFOR_01163 integrase K07497 K07497; putative transposase
D REIFOR_00371 integrase K07497 K07497; putative transposase
D REIFOR_02951 integrase K07497 K07497; putative transposase
D REIFOR_00500 integrase K07497 K07497; putative transposase
D REIFOR_01477 integrase K07497 K07497; putative transposase
D REIFOR_01480 integrase K07497 K07497; putative transposase
D REIFOR_02304 integrase K07497 K07497; putative transposase
D REIFOR_02411 integrase K07497 K07497; putative transposase
D REIFOR_02431 integrase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D REIFOR_00047 pspA; phage shock protein A, PspA K03969 pspA; phage shock protein A
D REIFOR_00846 rhodanese-like protein K03972 pspE; phage shock protein E
D REIFOR_02725 phage shock protein E K03972 pspE; phage shock protein E
D REIFOR_01609 rhodanese-related protein sulfurtransferase K03972 pspE; phage shock protein E
D REIFOR_02088 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
D REIFOR_01303 cryptocrhome, DASH subfamily / DNA photolyase K25656 cry; cryptochrome
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D REIFOR_00361 phosphate permease K03306 TC.PIT; inorganic phosphate transporter, PiT family
D REIFOR_02902 Na+-dependent transporter of the SNF family protein K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
C 99978 Cell growth
D REIFOR_00180 allophanate hydrolase 2 subunit 1 K06351 kipI; inhibitor of KinA
D REIFOR_01094 SpoVR (sporulation stave V, protein R) family protein K06415 spoVR; stage V sporulation protein R
D REIFOR_00890 peptidase, M23B family K22719 envC; murein hydrolase activator
C 99993 Cell motility
C 99995 Signaling proteins
D REIFOR_02652 membrane protein required for beta-lactamase induction K03807 ampE; AmpE protein
D REIFOR_00873 proQ; ProQ (influences osmotic activation of compatible solute ProP) K03607 proQ; ProP effector
D REIFOR_02687 uspA; universal stress protein UspA K14055 uspE; universal stress protein E
D REIFOR_03188 GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
D REIFOR_02398 anti-sigma factor K07167 chrR; putative transcriptional regulator
D REIFOR_02407 phoH; phosphate starvation-inducible ATPase PhoH with RNA binding protein motif protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D REIFOR_01697 phoH; putative ATPase K07175 phoH2; PhoH-like ATPase
D REIFOR_01092 PrkA family serine protein kinase K07180 prkA; serine protein kinase
D REIFOR_02536 SH3 domain protein K07184 ygiM; SH3 domain protein
D REIFOR_03106 nucleotide-binding protein, YajQ-like superfamily K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D REIFOR_01591 lolA; outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein
D REIFOR_01373 lolB; outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB
D REIFOR_02153 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D REIFOR_00944 outer membrane protein (OmpH-like) precursor K06142 hlpA; outer membrane protein
D REIFOR_00962 poylsaccharide-binding protein peptidase,.family M23, CBM50 K06194 nlpD; lipoprotein NlpD
D REIFOR_01444 capsular polysaccharide biosynthesis protein K07265 kpsS; capsular polysaccharide export protein
D REIFOR_01541 putative lipoprotein K07286 yajG; uncharacterized lipoprotein
D REIFOR_03292 nfeD; nodulation efficiency protein D (NfeD) K07340 ybbJ; inner membrane protein
D REIFOR_01272 hlyD; secretion protein HlyD K02005 ABC.CD.TX; HlyD family secretion protein
D REIFOR_02812 secretion protein HlyD K02005 ABC.CD.TX; HlyD family secretion protein
D REIFOR_02366 putative transport protein, DUF20 K11744 tqsA; AI-2 transport protein TqsA
D REIFOR_02009 ccmE; cytochrome c-type biogenesis protein CcmE, heme chaperone K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D REIFOR_02005 ccmH; cytochrome c heme lyase subunit CcmH K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D REIFOR_02006 ccmL; cytochrome c heme lyase subunit CcmL K02200 ccmH; cytochrome c-type biogenesis protein CcmH
C 99994 Others
D REIFOR_00369 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D REIFOR_00565 phnK; phosphonate transport ATP-binding protein PhnK K05781 phnK; putative phosphonate transport system ATP-binding protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D REIFOR_01984 colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D REIFOR_02403 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase, GH73 family K03796 bax; Bax protein
D REIFOR_02401 elaA; ElaA protein K02348 elaA; ElaA protein
D REIFOR_00825 putative histidinol phosphatase K04477 ycdX; putative hydrolase
D REIFOR_02838 serine protease, S33 family K07001 K07001; NTE family protein
D REIFOR_00683 haloacid dehalogenase K07025 K07025; putative hydrolase of the HAD superfamily
D REIFOR_00692 haloacid dehalogenase K07025 K07025; putative hydrolase of the HAD superfamily
D REIFOR_03169 erpA; iron--sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D REIFOR_02058 sufB; iron-sulfur cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D REIFOR_02056 sufD; iron-sulfur cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D REIFOR_02052 sufE; sulfur acceptor protein SufE for iron-sulfur cluster assembly K02426 sufE; cysteine desulfuration protein SufE
D REIFOR_02118 rhodanese domain protein K07146 K07146; UPF0176 protein
D REIFOR_01578 hypothetical protein K07153 hflD; high frequency lysogenization protein
D REIFOR_01082 lemA; LemA protein K03744 lemA; LemA protein
D REIFOR_01219 slyX; SlyX protein K03745 slyX; SlyX protein
D REIFOR_01985 dedD; DedD protein K03749 dedD; DedD protein
D REIFOR_00496 ATPase, AAA family K03112 damX; DamX protein
D REIFOR_00961 conserved hypothetical membrane protein K08974 K08974; putative membrane protein
D REIFOR_02248 SEC-C motif protein domain protein-containing protein K09858 K09858; SEC-C motif domain protein
D REIFOR_02348 phnA; alkylphosphonate utilization operon protein PhnA K06193 phnA; protein PhnA
C 99997 Function unknown
D REIFOR_00328 hypothetical protein K06938 K06938; uncharacterized protein
D REIFOR_02727 50S ribosome-binding protein GTP-binding protein family protein K06946 K06946; uncharacterized protein
D REIFOR_02093 amine oxidase K06954 K06954; uncharacterized protein
D REIFOR_02814 putative metal-dependent peptidase, M10A family K06973 K06973; uncharacterized protein
D REIFOR_03100 succinylglutamate desuccinylase K06987 K06987; uncharacterized protein
D REIFOR_00818 succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein
D REIFOR_02445 ring-cleaving dioxygenase, putative K06991 K06991; uncharacterized protein
D REIFOR_02288 glyoxalase family protein K06996 K06996; uncharacterized protein
D REIFOR_02412 membrane transport protein, MMPL domain protein K07003 K07003; uncharacterized protein
D REIFOR_02063 extracellular deoxyribonuclease (required for catabolism of external DNA) K07004 K07004; uncharacterized protein
D REIFOR_02036 pyridoxamine 5'-phosphate oxidase K07006 K07006; uncharacterized protein
D REIFOR_01440 membrane sulfatase-related protein K07014 K07014; uncharacterized protein
D REIFOR_01051 carbohydrate esterase, CE10 family K07019 K07019; uncharacterized protein
D REIFOR_00332 carbohydrate esterase, CE10 family K07020 K07020; uncharacterized protein
D REIFOR_01733 YecA family protein / metal-binding protein K07039 K07039; uncharacterized protein
D REIFOR_00014 hypothetical protein K07070 K07070; uncharacterized protein
D REIFOR_02331 sugar nucleotide epimerase YfcH,-like putative K07071 K07071; uncharacterized protein
D REIFOR_00144 TRAP transporter solute receptor, unknown substrate 1 K07080 K07080; uncharacterized protein
D REIFOR_00551 putative sodium-dependent bicarbonate transporter K07086 K07086; uncharacterized protein
D REIFOR_02904 anion exporter, TauE/SafE family K07090 K07090; uncharacterized protein
D REIFOR_02922 anion exporter, TauE/SafE family K07090 K07090; uncharacterized protein
D REIFOR_01703 putative anion exporter, TauE/SafE family K07090 K07090; uncharacterized protein
D REIFOR_01762 putative anion exporter, TauE/SafE family K07090 K07090; uncharacterized protein
D REIFOR_01105 anion exporter, TauE/SafE family K07090 K07090; uncharacterized protein
D REIFOR_00289 anion exporter, TauE/SafE family K07090 K07090; uncharacterized protein
D REIFOR_02477 anion exporter, TauE/SafE family K07090 K07090; uncharacterized protein
D REIFOR_02350 phosphoesterase K07098 K07098; uncharacterized protein
D REIFOR_02799 hypoxanthine-guanine phosphoribosyltransferase K07101 K07101; uncharacterized protein
D REIFOR_02800 hypoxanthine-guanine phosphoribosyltransferase K07101 K07101; uncharacterized protein
D REIFOR_01335 hypoxanthine-guanine phosphoribosyltransferase K07101 K07101; uncharacterized protein
D REIFOR_02074 putative membrane protein K07112 K07112; uncharacterized protein
D REIFOR_02075 conserved hypothetical membrane protein K07112 K07112; uncharacterized protein
D REIFOR_00794 lipocalin-related protein and Bos/Can/Equ allergen K07112 K07112; uncharacterized protein
D REIFOR_02683 lppC; LppC putative lipoprotein K07121 K07121; uncharacterized protein
D REIFOR_01308 short chain dehydrogenase/reductase family protein K07124 K07124; uncharacterized protein
D REIFOR_01247 Sel1 superfamily protein K07126 K07126; uncharacterized protein
D REIFOR_01932 ATPase, AAA family K07133 K07133; uncharacterized protein
D REIFOR_01318 NAD(FAD)-dependent dehydrogenase-like protein K07137 K07137; uncharacterized protein
D REIFOR_01548 putative iron-sulfur binding protein K07140 K07140; MOSC domain-containing protein
D REIFOR_00858 aspartyl-tRNA amidotransferase subunit B K09117 K09117; uncharacterized protein
D REIFOR_02635 ybeD; putative lipoate regulatory protein YbeD K09158 K09158; uncharacterized protein
D REIFOR_02084 hypothetical protein K09160 K09160; uncharacterized protein
D REIFOR_02094 hypothetical protein K09701 K09701; uncharacterized protein
D REIFOR_02328 hypothetical protein K09749 K09749; uncharacterized protein
D REIFOR_02330 hypothetical protein K09749 K09749; uncharacterized protein
D REIFOR_03332 PAP2-like superfamily protein K09775 K09775; uncharacterized protein
D REIFOR_00703 hypothetical protein K09780 K09780; uncharacterized protein
D REIFOR_02535 YciI family protein K09780 K09780; uncharacterized protein
D REIFOR_01093 hypothetical protein K09786 K09786; uncharacterized protein
D REIFOR_02552 hypothetical protein K09791 K09791; uncharacterized protein
D REIFOR_01007 cytochrome c biogenesis protein K09792 K09792; uncharacterized protein
D REIFOR_00892 divergent polysaccharide deacetylase family protein K09798 K09798; uncharacterized protein
D REIFOR_02900 rnfH; protein RnfH K09801 K09801; uncharacterized protein
D REIFOR_03081 hypothetical protein K09803 K09803; uncharacterized protein
D REIFOR_01721 hypothetical protein K05952 K05952; uncharacterized protein
D REIFOR_03288 DNA-binding protein K00243 K00243; uncharacterized protein
D REIFOR_01540 hypothetical protein K09861 K09861; uncharacterized protein
D REIFOR_02661 DNA gyrase inhibitor K09862 K09862; uncharacterized protein
D REIFOR_00108 YecA family protein K09895 K09895; uncharacterized protein
D REIFOR_03102 hypothetical protein K09897 K09897; uncharacterized protein
D REIFOR_02000 hypothetical protein K09898 K09898; uncharacterized protein
D REIFOR_02085 protein YcgL K09902 K09902; uncharacterized protein
D REIFOR_02374 hypothetical protein K09908 K09908; uncharacterized protein
D REIFOR_01320 hypothetical protein K09910 K09910; uncharacterized protein
D REIFOR_03204 nucleoprotein/polynucleotide-associated enzyme K09912 K09912; uncharacterized protein
D REIFOR_01396 mviM; virulence factor MviM K09915 K09915; uncharacterized protein
D REIFOR_01268 hypothetical protein K09916 K09916; uncharacterized protein
D REIFOR_01257 N-acetyltransferase, GNAT family K09919 K09919; uncharacterized protein
D REIFOR_00302 hypothetical protein K09920 K09920; uncharacterized protein
D REIFOR_00169 hypothetical protein K09921 K09921; uncharacterized protein
D REIFOR_02726 hypothetical protein K09923 K09923; uncharacterized protein
D REIFOR_01010 ccoH; cytochrome c oxidase maturation protein CcoH K09926 K09926; uncharacterized protein
D REIFOR_01750 hypothetical protein K09938 K09938; uncharacterized protein
D REIFOR_03337 deoxycytidine triphosphate deaminase K09948 K09948; uncharacterized protein
D REIFOR_01349 hypothetical protein K09950 K09950; uncharacterized protein
D REIFOR_00572 hypothetical protein K09966 K09966; uncharacterized protein
D REIFOR_03287 gumN; conjugative transfer protein GumN K09973 K09973; uncharacterized protein
D REIFOR_01266 hypothetical protein K09977 K09977; uncharacterized protein
D REIFOR_03090 hypothetical protein K09983 K09983; uncharacterized protein
D REIFOR_01632 proteophosphoglycan precursor K09986 K09986; uncharacterized protein
D REIFOR_00362 phosphate transport regulator (distant similar to PhoU) K07220 K07220; uncharacterized protein
!
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 18, 2024