+D Messenger RNA Biogenesis KO
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Prokaryotic Defense System - Rhodoferax ferrireducens
%
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ACRISPR-Cas system
B Universal Cas proteins
C Rfer_3907 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
C Rfer_4348 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
C Rfer_3908 CRISPR-associated protein, Cas2 family K09951 cas2; CRISPR-associated protein Cas2
B Type I CRISPR-Cas system
C Type I signiture cas proteins
D Rfer_3901 CRISPR-associated helicase, Cas3 family K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
C Subtype I-A factors
D Rfer_3906 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-B factors
D Rfer_3906 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-C factors
D Rfer_3903 CRISPR-associated protein, Csd1 family K19117 csd1; CRISPR-associated protein Csd1
D Rfer_3904 CRISPR-associated protein, Csd2 family K19118 csd2; CRISPR-associated protein Csd2
D Rfer_3906 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Rfer_3902 CRISPR-associated protein, Csd5d family K19119 cas5d; CRISPR-associated protein Cas5d
C Subtype I-D factors
D Rfer_3906 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-E factors
D Rfer_4349 hypothetical protein K19126 casE; CRISPR system Cascade subunit CasE
C Subtype I-F factors
C Subtype I-U factors
B Type II CRISPR-Cas system
C Type II signiture cas proteins
C Subtype II-A factors
C Subtype II-B factors
D Rfer_3906 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
B Type III CRISPR-Cas system
C Type III signiture cas proteins
C Subtype III-A factors
C Subtype III-B factors
C Subtype III-U factors
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ARestriction and modification system (R-M system)
B Type I R-M system
C Rfer_0028 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C Rfer_4010 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C Rfer_1062 type III restriction enzyme, res subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C Rfer_1367 type III restriction enzyme, res subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C Rfer_0030 restriction modification system DNA specificity domain K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C Rfer_4007 Restriction endonuclease S subunits-like K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C Rfer_1060 restriction modification system DNA specificity domain K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C Rfer_1366 putative type I site-specific restriction-modification system, S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C Rfer_1059 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C Rfer_0032 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C Rfer_4006 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C Rfer_1365 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
B Type II R-M system
C Restriction endonucleases
D Rfer_4209 hypothetical protein K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4]
C DNA methyltransferases
D Rfer_1822 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D Rfer_3077 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
B Type III R-M system
B Type IV R-M system
C Rfer_1819 restriction endonuclease K07448 mrr; restriction system protein
C Rfer_1543 putative membrane protein K07448 mrr; restriction system protein
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AToxin-antitoxin system (TA system)
B Type I TA system
C Hok-Sok
C SymE-SymR
C Ldr-Rdl
C TisB-IstR
C Ibs-Sib
C ShoB-OhsC
C RalR-RalA
B Type II TA system
C MazF-MazE
C ChpB-ChpS
C YhaV-PrlF
C RelE/StbE-RelB/StbD
C YafQ-dinJ
D Rfer_1750 conserved hypothetical protein K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D Rfer_1749 RelB antitoxin K07473 dinJ; DNA-damage-inducible protein J
C YoeB-YefM
C HipA-HipB
C HicA-HicB
C YafO-YafN
C Hha-TomB
C PspC-PspB
C CcdB-CcdA
D Rfer_2987 CcdB-like toxin protein K19163 ccdB; toxin CcdB
D Rfer_2988 potential post-segregation antitoxin K19164 ccdA; antitoxin CcdA
C ParE-ParD
C Doc-Phd
D Rfer_3404 Death-on-curing protein K07341 doc; death on curing protein
C HigB-HigA
D Rfer_4450 plasmid maintenance system killer K07334 higB-1; toxin HigB-1
D Rfer_4449 plasmid maintenance system antidote protein, XRE family K21498 higA-1; antitoxin HigA-1
C MqsR-MqsA
C VapC-VapB
C PezT-PezA
C YobL-YobK
C YokI-YokJ
C YqcG-YqcF
C YxiD-YxxD
C FitB-FitA
D Rfer_0624 PilT protein-like K07062 fitB; toxin FitB [EC:3.1.-.-]
C BC_0920-BC_0921
C Type II TA system related factors
D Rfer_3420 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Rfer_3052 Twin-arginine translocation pathway signal K03531 ftsZ; cell division protein FtsZ
D Rfer_3923 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Rfer_2641 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Rfer_2642 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Rfer_2681 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
B Type III TA system
C AbiQ system
B Type IV TA system
C YeeV-YeeU
C CptA-CptB
D Rfer_1797 protein of unknown function DUF339 K09159 cptB; antitoxin CptB
B Type V TA system
C GhoT-GhoS
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ADNA phosphothiolation system
B Sulfur modification proteins
C Rfer_2177 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C Rfer_4334 conserved hypothetical protein K19170 dndC; DNA sulfur modification protein DndC
B DNA phosphorothioation-dependent restriction proteins
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023