+D Messenger RNA Biogenesis KO #

  Prokaryotic Defense System - Rhodoferax ferrireducens

% ! ACRISPR-Cas system B Universal Cas proteins C Rfer_3907 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 C Rfer_4348 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 C Rfer_3908 CRISPR-associated protein, Cas2 family K09951 cas2; CRISPR-associated protein Cas2 B Type I CRISPR-Cas system C Type I signiture cas proteins D Rfer_3901 CRISPR-associated helicase, Cas3 family K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] C Subtype I-A factors D Rfer_3906 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] C Subtype I-B factors D Rfer_3906 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] C Subtype I-C factors D Rfer_3903 CRISPR-associated protein, Csd1 family K19117 csd1; CRISPR-associated protein Csd1 D Rfer_3904 CRISPR-associated protein, Csd2 family K19118 csd2; CRISPR-associated protein Csd2 D Rfer_3906 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D Rfer_3902 CRISPR-associated protein, Csd5d family K19119 cas5d; CRISPR-associated protein Cas5d C Subtype I-D factors D Rfer_3906 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] C Subtype I-E factors D Rfer_4349 hypothetical protein K19126 casE; CRISPR system Cascade subunit CasE C Subtype I-F factors C Subtype I-U factors B Type II CRISPR-Cas system C Type II signiture cas proteins C Subtype II-A factors C Subtype II-B factors D Rfer_3906 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] B Type III CRISPR-Cas system C Type III signiture cas proteins C Subtype III-A factors C Subtype III-B factors C Subtype III-U factors # ARestriction and modification system (R-M system) B Type I R-M system C Rfer_0028 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C Rfer_4010 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C Rfer_1062 type III restriction enzyme, res subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C Rfer_1367 type III restriction enzyme, res subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C Rfer_0030 restriction modification system DNA specificity domain K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C Rfer_4007 Restriction endonuclease S subunits-like K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C Rfer_1060 restriction modification system DNA specificity domain K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C Rfer_1366 putative type I site-specific restriction-modification system, S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C Rfer_1059 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C Rfer_0032 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C Rfer_4006 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] C Rfer_1365 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] B Type II R-M system C Restriction endonucleases D Rfer_4209 hypothetical protein K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4] C DNA methyltransferases D Rfer_1822 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Rfer_3077 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] B Type III R-M system B Type IV R-M system C Rfer_1819 restriction endonuclease K07448 mrr; restriction system protein C Rfer_1543 putative membrane protein K07448 mrr; restriction system protein # AToxin-antitoxin system (TA system) B Type I TA system C Hok-Sok C SymE-SymR C Ldr-Rdl C TisB-IstR C Ibs-Sib C ShoB-OhsC C RalR-RalA B Type II TA system C MazF-MazE C ChpB-ChpS C YhaV-PrlF C RelE/StbE-RelB/StbD C YafQ-dinJ D Rfer_1750 conserved hypothetical protein K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-] D Rfer_1749 RelB antitoxin K07473 dinJ; DNA-damage-inducible protein J C YoeB-YefM C HipA-HipB C HicA-HicB C YafO-YafN C Hha-TomB C PspC-PspB C CcdB-CcdA D Rfer_2987 CcdB-like toxin protein K19163 ccdB; toxin CcdB D Rfer_2988 potential post-segregation antitoxin K19164 ccdA; antitoxin CcdA C ParE-ParD C Doc-Phd D Rfer_3404 Death-on-curing protein K07341 doc; death on curing protein C HigB-HigA D Rfer_4450 plasmid maintenance system killer K07334 higB-1; toxin HigB-1 D Rfer_4449 plasmid maintenance system antidote protein, XRE family K21498 higA-1; antitoxin HigA-1 C MqsR-MqsA C VapC-VapB C PezT-PezA C YobL-YobK C YokI-YokJ C YqcG-YqcF C YxiD-YxxD C FitB-FitA D Rfer_0624 PilT protein-like K07062 fitB; toxin FitB [EC:3.1.-.-] C BC_0920-BC_0921 C Type II TA system related factors D Rfer_3420 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Rfer_3052 Twin-arginine translocation pathway signal K03531 ftsZ; cell division protein FtsZ D Rfer_3923 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Rfer_2641 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Rfer_2642 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Rfer_2681 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] B Type III TA system C AbiQ system B Type IV TA system C YeeV-YeeU C CptA-CptB D Rfer_1797 protein of unknown function DUF339 K09159 cptB; antitoxin CptB B Type V TA system C GhoT-GhoS # ADNA phosphothiolation system B Sulfur modification proteins C Rfer_2177 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C Rfer_4334 conserved hypothetical protein K19170 dndC; DNA sulfur modification protein DndC B DNA phosphorothioation-dependent restriction proteins ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023