+F Repair protein KO #

  DNA Repair and Recombination Proteins - Rubrivivax gelatinosus

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D RGE_35120 putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RGE_42040 phr; deoxyribodipyrimidine photo-lyase Phr K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E RGE_03120 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E RGE_08770 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RGE_15350 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E RGE_37110 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D RGE_10350 putative hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RGE_12870 putative hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RGE_12920 putative hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RGE_34870 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D RGE_35120 putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RGE_42040 phr; deoxyribodipyrimidine photo-lyase Phr K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D RGE_00210 putative deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E RGE_03120 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E RGE_00940 putative uracil-DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E RGE_04780 putative uracil-DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E RGE_31630 alkA; DNA-3-methyladenine glycosylase II AlkA K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E RGE_35110 ada_alkA; DNA-O6-methylguanine-protein-cysteine S-methyltransferase/DNA-3-methyladenine glycosylase Ada/AlkA K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E RGE_08770 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RGE_08750 mutM; formamidopyrimidine-DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase MutM K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E RGE_15350 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E RGE_14460 xthA; exodeoxyribonuclease III XthA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E RGE_46730 exoA; exodeoxyribonuclease ExoA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E RGE_21590 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E RGE_24120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E RGE_33870 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E RGE_43250 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E RGE_46390 uvrA; UvrABC system protein A UvrA K03701 uvrA; excinuclease ABC subunit A E RGE_15390 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E RGE_16220 uvrC; UvrABC system protein C UvrC K03703 uvrC; excinuclease ABC subunit C E RGE_18140 putative ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RGE_33910 uvrD; DNA helicase II UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RGE_33870 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] E RGE_24120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F RGE_03200 rpoB; DNA-directed RNA polymerase subunit beta RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F RGE_03210 rpoC; DNA-directed RNA polymerase subunit beta' RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F RGE_03560 rpoA; DNA-directed RNA polymerase subunit alpha RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F RGE_35670 rpoZ; DNA-directed RNA polymerase subunit omega RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F RGE_26920 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E RGE_15160 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E RGE_14740 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E RGE_12150 sbcB; exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E RGE_31970 xseA_sodB; exodeoxyribonuclease 7 large subunit/superoxide dismutase K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E RGE_16670 xseB; exodeoxyribonuclease 7 small subunit XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E RGE_13680 dnaE; DNA polymerase III alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E RGE_00020 dnaN; DNA polymerase III beta subunit DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E RGE_29130 holC; putative DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E RGE_45180 holA; DNA polymerase III delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E RGE_26080 holB; DNA polymerase III delta' subunit HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E RGE_43320 putative exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RGE_18670 dnaQ; DNA polymerase III epsilon subunit DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RGE_33000 dnaX; DNA polymerase III gamma/tau subunit DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E RGE_24120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E RGE_18140 putative ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RGE_33910 uvrD; DNA helicase II UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RGE_46350 ssb; single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E RGE_37530 recB; exodeoxyribonuclease V beta chain RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E RGE_37520 recC; exodeoxyribonuclease V gamma chain RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E RGE_37540 recD; exodeoxyribonuclease V alpha chain RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E RGE_46600 recA; protein RecA K03553 recA; recombination protein RecA E RGE_44220 rubA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E RGE_44240 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RGE_10140 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E RGE_02130 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E RGE_27190 priB; primosomal replication protein N PriB K02686 priB; primosomal replication protein N E RGE_12150 sbcB; exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RecFOR pathway proteins E RGE_46600 recA; protein RecA K03553 recA; recombination protein RecA E RGE_01670 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E RGE_00980 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E RGE_21590 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E RGE_40970 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E RGE_32980 recR; recombination protein RecR K06187 recR; recombination protein RecR E RGE_08800 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E RGE_44390 rdgC; recombination-associated exonuclease RdgC K03554 rdgC; recombination associated protein RdgC E RGE_44220 rubA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E RGE_44240 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RGE_10140 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E RGE_06830 cas1; CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E RGE_38550 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E RGE_37590 DNA end-binding protein Ku K10979 ku; DNA end-binding protein Ku E RGE_26430 ligD; ATP-dependent DNA ligase LigD K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F RGE_13920 gyrA; DNA gyrase subunit A GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F RGE_00030 gyrB; DNA gyrase subunit B GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F RGE_24810 putative DNA topoisomerase, type I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F RGE_16250 hupB; DNA-binding protein HU-beta HupB K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F RGE_21590 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F RGE_40970 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F RGE_32980 recR; recombination protein RecR K06187 recR; recombination protein RecR F RGE_24120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F RGE_10220 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F RGE_24580 ihfA; integration host factor subunit alpha IhfA K04764 ihfA; integration host factor subunit alpha F RGE_13860 ihfB; integration host factor subunit beta IhfB K05788 ihfB; integration host factor subunit beta E Supressor F RGE_12150 sbcB; exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F RGE_22330 ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F RGE_46360 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F RGE_43250 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F RGE_46390 uvrA; UvrABC system protein A UvrA K03701 uvrA; excinuclease ABC subunit A F RGE_15390 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B F RGE_18070 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F RGE_01920 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F RGE_11700 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F RGE_05760 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F RGE_27020 H-NS histone family protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D RGE_36520 dinP; DNA-directed DNA polymerase DinP K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D RGE_46600 recA; protein RecA K03553 recA; recombination protein RecA D RGE_23970 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D RGE_08800 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D RGE_18100 hypothetical protein K14160 imuA; protein ImuA D RGE_34260 hypothetical protein K14160 imuA; protein ImuA D RGE_18090 hypothetical protein K14161 imuB; protein ImuB D RGE_34230 hypothetical protein K14161 imuB; protein ImuB D RGE_13120 dnaE; error-prone DNA polymerase DnaE K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D RGE_18080 dnaE; error-prone DNA polymerase DnaE K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D RGE_46350 ssb; single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein D RGE_46590 recX; recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D RGE_02690 pcrA; ATP-dependent DNA helicase PcrA K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D RGE_27650 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D RGE_17940 putative ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D RGE_37840 putative ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D RGE_10350 putative hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RGE_12870 putative hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RGE_12920 putative hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RGE_34870 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RGE_23000 nrdJ; vitamin B12-dependent ribonucleoside-diphosphate reductase NrdJ K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RGE_42320 nrdA; ribonucleoside-diphosphate reductase, alpha subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RGE_42310 nrdB; ribonucleoside-diphosphate reductase, beta subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024