+F Repair protein KO
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DNA Repair and Recombination Proteins - Rubrivivax gelatinosus
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D RGE_35120 putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RGE_42040 phr; deoxyribodipyrimidine photo-lyase Phr K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E RGE_03120 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E RGE_08770 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E RGE_15350 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E RGE_37110 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D RGE_10350 putative hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RGE_12870 putative hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RGE_12920 putative hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RGE_34870 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D RGE_35120 putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RGE_42040 phr; deoxyribodipyrimidine photo-lyase Phr K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RGE_00210 putative deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E RGE_03120 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E RGE_00940 putative uracil-DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E RGE_04780 putative uracil-DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E RGE_31630 alkA; DNA-3-methyladenine glycosylase II AlkA K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E RGE_35110 ada_alkA; DNA-O6-methylguanine-protein-cysteine S-methyltransferase/DNA-3-methyladenine glycosylase Ada/AlkA K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E RGE_08770 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E RGE_08750 mutM; formamidopyrimidine-DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase MutM K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E RGE_15350 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E RGE_14460 xthA; exodeoxyribonuclease III XthA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E RGE_46730 exoA; exodeoxyribonuclease ExoA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E RGE_21590 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E RGE_24120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E RGE_33870 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E RGE_43250 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
E RGE_46390 uvrA; UvrABC system protein A UvrA K03701 uvrA; excinuclease ABC subunit A
E RGE_15390 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
E RGE_16220 uvrC; UvrABC system protein C UvrC K03703 uvrC; excinuclease ABC subunit C
E RGE_18140 putative ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RGE_33910 uvrD; DNA helicase II UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RGE_33870 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
E RGE_24120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F RGE_03200 rpoB; DNA-directed RNA polymerase subunit beta RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F RGE_03210 rpoC; DNA-directed RNA polymerase subunit beta' RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F RGE_03560 rpoA; DNA-directed RNA polymerase subunit alpha RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F RGE_35670 rpoZ; DNA-directed RNA polymerase subunit omega RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F RGE_26920 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E RGE_15160 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E RGE_14740 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E RGE_12150 sbcB; exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E RGE_31970 xseA_sodB; exodeoxyribonuclease 7 large subunit/superoxide dismutase K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E RGE_16670 xseB; exodeoxyribonuclease 7 small subunit XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E RGE_13680 dnaE; DNA polymerase III alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E RGE_00020 dnaN; DNA polymerase III beta subunit DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E RGE_29130 holC; putative DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E RGE_45180 holA; DNA polymerase III delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E RGE_26080 holB; DNA polymerase III delta' subunit HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E RGE_43320 putative exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E RGE_18670 dnaQ; DNA polymerase III epsilon subunit DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E RGE_33000 dnaX; DNA polymerase III gamma/tau subunit DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E RGE_24120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E RGE_18140 putative ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RGE_33910 uvrD; DNA helicase II UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RGE_46350 ssb; single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E RGE_37530 recB; exodeoxyribonuclease V beta chain RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E RGE_37520 recC; exodeoxyribonuclease V gamma chain RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E RGE_37540 recD; exodeoxyribonuclease V alpha chain RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E RGE_46600 recA; protein RecA K03553 recA; recombination protein RecA
E RGE_44220 rubA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E RGE_44240 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E RGE_10140 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E RGE_02130 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E RGE_27190 priB; primosomal replication protein N PriB K02686 priB; primosomal replication protein N
E RGE_12150 sbcB; exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D RecFOR pathway proteins
E RGE_46600 recA; protein RecA K03553 recA; recombination protein RecA
E RGE_01670 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E RGE_00980 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E RGE_21590 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E RGE_40970 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E RGE_32980 recR; recombination protein RecR K06187 recR; recombination protein RecR
E RGE_08800 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E RGE_44390 rdgC; recombination-associated exonuclease RdgC K03554 rdgC; recombination associated protein RdgC
E RGE_44220 rubA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E RGE_44240 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E RGE_10140 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E RGE_06830 cas1; CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E RGE_38550 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E RGE_37590 DNA end-binding protein Ku K10979 ku; DNA end-binding protein Ku
E RGE_26430 ligD; ATP-dependent DNA ligase LigD K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F RGE_13920 gyrA; DNA gyrase subunit A GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F RGE_00030 gyrB; DNA gyrase subunit B GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F RGE_24810 putative DNA topoisomerase, type I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F RGE_16250 hupB; DNA-binding protein HU-beta HupB K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F RGE_21590 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F RGE_40970 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F RGE_32980 recR; recombination protein RecR K06187 recR; recombination protein RecR
F RGE_24120 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F RGE_10220 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F RGE_24580 ihfA; integration host factor subunit alpha IhfA K04764 ihfA; integration host factor subunit alpha
F RGE_13860 ihfB; integration host factor subunit beta IhfB K05788 ihfB; integration host factor subunit beta
E Supressor
F RGE_12150 sbcB; exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F RGE_22330 ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F RGE_46360 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F RGE_43250 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
F RGE_46390 uvrA; UvrABC system protein A UvrA K03701 uvrA; excinuclease ABC subunit A
F RGE_15390 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
F RGE_18070 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F RGE_01920 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F RGE_11700 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F RGE_05760 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F RGE_27020 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D RGE_36520 dinP; DNA-directed DNA polymerase DinP K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D RGE_46600 recA; protein RecA K03553 recA; recombination protein RecA
D RGE_23970 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D RGE_08800 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D RGE_18100 hypothetical protein K14160 imuA; protein ImuA
D RGE_34260 hypothetical protein K14160 imuA; protein ImuA
D RGE_18090 hypothetical protein K14161 imuB; protein ImuB
D RGE_34230 hypothetical protein K14161 imuB; protein ImuB
D RGE_13120 dnaE; error-prone DNA polymerase DnaE K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D RGE_18080 dnaE; error-prone DNA polymerase DnaE K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D RGE_46350 ssb; single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein
D RGE_46590 recX; recombination regulator RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D RGE_02690 pcrA; ATP-dependent DNA helicase PcrA K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D RGE_27650 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D RGE_17940 putative ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D RGE_37840 putative ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D RGE_10350 putative hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RGE_12870 putative hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RGE_12920 putative hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RGE_34870 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RGE_23000 nrdJ; vitamin B12-dependent ribonucleoside-diphosphate reductase NrdJ K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RGE_42320 nrdA; ribonucleoside-diphosphate reductase, alpha subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RGE_42310 nrdB; ribonucleoside-diphosphate reductase, beta subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024