+F Repair protein KO
#
DNA Repair and Recombination Proteins - Rhodococcus jostii
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D RHA1_ro02330 probable methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RHA1_ro02332 probable methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RHA1_ro05553 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RHA1_ro05003 phr; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E RHA1_ro06512 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E RHA1_ro00943 probable 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E RHA1_ro04448 probable A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E RHA1_ro04323 probable DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E RHA1_ro04951 probable DNA repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D RHA1_ro05931 MutT/NUDIX hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RHA1_ro03365 possible hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RHA1_ro02192 possible NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RHA1_ro02164 possible MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RHA1_ro06829 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D RHA1_ro02330 probable methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RHA1_ro02332 probable methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RHA1_ro05553 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RHA1_ro05003 phr; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RHA1_ro02328 alkylated DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E RHA1_ro06512 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E RHA1_ro05894 G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E RHA1_ro03989 possible DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E RHA1_ro05941 conserved hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E RHA1_ro02327 probable DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E RHA1_ro00943 probable 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E RHA1_ro04448 probable A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E RHA1_ro05971 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E RHA1_ro02246 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E RHA1_ro06523 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E RHA1_ro01377 probable DNA-formamidopyrimidine glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E RHA1_ro06270 probable DNA-formamidopyrimidine glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E RHA1_ro04323 probable DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E RHA1_ro00291 probable exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E RHA1_ro06240 probable DNA-(apurinic or apyrimidinic site) lyase K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E RHA1_ro02178 probable DNA-(apurinic or apyrimidinic site) lyase K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E RHA1_ro01891 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
D DNA ligase
E RHA1_ro06469 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E RHA1_ro00990 polA; DNA-directed DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E RHA1_ro00334 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E RHA1_ro00969 uvrA1; excision nuclease ABC subunit A (UvrA protein) K03701 uvrA; excinuclease ABC subunit A
E RHA1_ro00976 uvrB; excision nuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E RHA1_ro07173 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E RHA1_ro05570 probable ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RHA1_ro06381 helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RHA1_ro06376 probable ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RHA1_ro00990 polA; DNA-directed DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E RHA1_ro06469 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F RHA1_ro01962 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F RHA1_ro01961 rpoC; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F RHA1_ro06162 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F RHA1_ro07156 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F RHA1_ro05760 transcription repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
E RHA1_ro05868 probable exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E RHA1_ro05867 probable exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E RHA1_ro01069 dnaE1; DNA-directed DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E RHA1_ro03667 dnaN; DNA-directed DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E RHA1_ro01286 possible DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E RHA1_ro04354 probable DNA-directed DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E RHA1_ro01126 DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E RHA1_ro10065 possible exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E RHA1_ro05104 DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E RHA1_ro01831 probable DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E RHA1_ro04199 DNA polymerase III subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E RHA1_ro06469 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E RHA1_ro05570 probable ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RHA1_ro06381 helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RHA1_ro06376 probable ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RHA1_ro01396 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
E RHA1_ro03431 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E RHA1_ro04148 probable very short patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E RHA1_ro01837 exodeoxyribonuclease V beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E RHA1_ro01838 recC; exodeoxyribonuclease V gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E RHA1_ro01836 probable exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E RHA1_ro06765 recA; recombinase A K03553 recA; recombination protein RecA
E RHA1_ro06893 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E RHA1_ro06894 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E RHA1_ro06892 ruvC; crossover junction endoribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E RHA1_ro07159 probable primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E RHA1_ro05874 sbcC; ATP-dependent dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E RHA1_ro05873 sbcD; ATP-dependent dsDNA exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E RHA1_ro06765 recA; recombinase A K03553 recA; recombination protein RecA
E RHA1_ro04457 radA; possible DNA repair protein RadA: lon protease K04485 radA; DNA repair protein RadA/Sms
E RHA1_ro03669 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF
E RHA1_ro06516 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E RHA1_ro01225 probable DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E RHA1_ro04211 recombination protein K06187 recR; recombination protein RecR
E RHA1_ro00934 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E RHA1_ro06893 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E RHA1_ro06894 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E RHA1_ro06892 ruvC; crossover junction endoribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E RHA1_ro05874 sbcC; ATP-dependent dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E RHA1_ro05873 sbcD; ATP-dependent dsDNA exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
E RHA1_ro01417 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E RHA1_ro07202 DNA binding protein, Ku-like K10979 ku; DNA end-binding protein Ku
E RHA1_ro05048 DNA ligase (ATP) K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E RHA1_ro00015 possible DNA-ligase (ATP), C-terminal K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E RHA1_ro00237 possible DNA ligase (ATP), C-terminal K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E RHA1_ro11122 probable DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E RHA1_ro11147 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F RHA1_ro03680 gyrA; DNA topoisomerase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F RHA1_ro03674 gyrB; DNA topoisomerase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F RHA1_ro04353 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F RHA1_ro06501 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F RHA1_ro01225 probable DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F RHA1_ro04211 recombination protein K06187 recR; recombination protein RecR
F RHA1_ro06469 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F RHA1_ro01304 probable ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F RHA1_ro00334 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F RHA1_ro00969 uvrA1; excision nuclease ABC subunit A (UvrA protein) K03701 uvrA; excinuclease ABC subunit A
F RHA1_ro00976 uvrB; excision nuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D RHA1_ro01077 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D RHA1_ro01383 probable DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D RHA1_ro01702 probable DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D RHA1_ro06765 recA; recombinase A K03553 recA; recombination protein RecA
D RHA1_ro00572 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D RHA1_ro06788 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D RHA1_ro00934 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D RHA1_ro06213 possible DNA-directed DNA polymerase K14161 imuB; protein ImuB
D RHA1_ro06227 dnaE2; DNA-directed DNA polymerase alpha subunit (DNA polymerase III alpha subunit) K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D RHA1_ro01396 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D RHA1_ro03431 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D RHA1_ro06766 recX; regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D RHA1_ro01444 probable ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D RHA1_ro06271 probable ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D RHA1_ro05931 MutT/NUDIX hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RHA1_ro03365 possible hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RHA1_ro02192 possible NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RHA1_ro02164 possible MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RHA1_ro06502 possible MutT family hydrolase K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D RHA1_ro00930 probable ADP-ribose diphosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D RHA1_ro06829 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RHA1_ro06441 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RHA1_ro06442 nrdG; ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RHA1_ro06217 probable ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D RHA1_ro06647 phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024