+F Repair protein KO #

  DNA Repair and Recombination Proteins - Rhodococcus jostii

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D RHA1_ro02330 probable methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RHA1_ro02332 probable methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RHA1_ro05553 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RHA1_ro05003 phr; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E RHA1_ro06512 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E RHA1_ro00943 probable 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E RHA1_ro04448 probable A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RHA1_ro04323 probable DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E RHA1_ro04951 probable DNA repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D RHA1_ro05931 MutT/NUDIX hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RHA1_ro03365 possible hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RHA1_ro02192 possible NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RHA1_ro02164 possible MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RHA1_ro06829 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D RHA1_ro02330 probable methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RHA1_ro02332 probable methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RHA1_ro05553 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RHA1_ro05003 phr; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D RHA1_ro02328 alkylated DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E RHA1_ro06512 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E RHA1_ro05894 G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E RHA1_ro03989 possible DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E RHA1_ro05941 conserved hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E RHA1_ro02327 probable DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E RHA1_ro00943 probable 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E RHA1_ro04448 probable A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RHA1_ro05971 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E RHA1_ro02246 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E RHA1_ro06523 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E RHA1_ro01377 probable DNA-formamidopyrimidine glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E RHA1_ro06270 probable DNA-formamidopyrimidine glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E RHA1_ro04323 probable DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E RHA1_ro00291 probable exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E RHA1_ro06240 probable DNA-(apurinic or apyrimidinic site) lyase K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E RHA1_ro02178 probable DNA-(apurinic or apyrimidinic site) lyase K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E RHA1_ro01891 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ D DNA ligase E RHA1_ro06469 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E RHA1_ro00990 polA; DNA-directed DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E RHA1_ro00334 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E RHA1_ro00969 uvrA1; excision nuclease ABC subunit A (UvrA protein) K03701 uvrA; excinuclease ABC subunit A E RHA1_ro00976 uvrB; excision nuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E RHA1_ro07173 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E RHA1_ro05570 probable ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RHA1_ro06381 helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RHA1_ro06376 probable ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RHA1_ro00990 polA; DNA-directed DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E RHA1_ro06469 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F RHA1_ro01962 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F RHA1_ro01961 rpoC; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F RHA1_ro06162 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F RHA1_ro07156 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F RHA1_ro05760 transcription repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E RHA1_ro05868 probable exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E RHA1_ro05867 probable exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E RHA1_ro01069 dnaE1; DNA-directed DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E RHA1_ro03667 dnaN; DNA-directed DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E RHA1_ro01286 possible DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E RHA1_ro04354 probable DNA-directed DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E RHA1_ro01126 DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RHA1_ro10065 possible exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RHA1_ro05104 DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RHA1_ro01831 probable DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RHA1_ro04199 DNA polymerase III subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E RHA1_ro06469 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E RHA1_ro05570 probable ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RHA1_ro06381 helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RHA1_ro06376 probable ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RHA1_ro01396 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein E RHA1_ro03431 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E RHA1_ro04148 probable very short patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E RHA1_ro01837 exodeoxyribonuclease V beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E RHA1_ro01838 recC; exodeoxyribonuclease V gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E RHA1_ro01836 probable exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E RHA1_ro06765 recA; recombinase A K03553 recA; recombination protein RecA E RHA1_ro06893 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E RHA1_ro06894 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RHA1_ro06892 ruvC; crossover junction endoribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E RHA1_ro07159 probable primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E RHA1_ro05874 sbcC; ATP-dependent dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E RHA1_ro05873 sbcD; ATP-dependent dsDNA exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E RHA1_ro06765 recA; recombinase A K03553 recA; recombination protein RecA E RHA1_ro04457 radA; possible DNA repair protein RadA: lon protease K04485 radA; DNA repair protein RadA/Sms E RHA1_ro03669 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF E RHA1_ro06516 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E RHA1_ro01225 probable DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E RHA1_ro04211 recombination protein K06187 recR; recombination protein RecR E RHA1_ro00934 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E RHA1_ro06893 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E RHA1_ro06894 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RHA1_ro06892 ruvC; crossover junction endoribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E RHA1_ro05874 sbcC; ATP-dependent dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E RHA1_ro05873 sbcD; ATP-dependent dsDNA exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E RHA1_ro01417 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E RHA1_ro07202 DNA binding protein, Ku-like K10979 ku; DNA end-binding protein Ku E RHA1_ro05048 DNA ligase (ATP) K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E RHA1_ro00015 possible DNA-ligase (ATP), C-terminal K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E RHA1_ro00237 possible DNA ligase (ATP), C-terminal K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E RHA1_ro11122 probable DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E RHA1_ro11147 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F RHA1_ro03680 gyrA; DNA topoisomerase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F RHA1_ro03674 gyrB; DNA topoisomerase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F RHA1_ro04353 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F RHA1_ro06501 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F RHA1_ro01225 probable DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F RHA1_ro04211 recombination protein K06187 recR; recombination protein RecR F RHA1_ro06469 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F RHA1_ro01304 probable ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F RHA1_ro00334 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F RHA1_ro00969 uvrA1; excision nuclease ABC subunit A (UvrA protein) K03701 uvrA; excinuclease ABC subunit A F RHA1_ro00976 uvrB; excision nuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D RHA1_ro01077 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D RHA1_ro01383 probable DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D RHA1_ro01702 probable DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D RHA1_ro06765 recA; recombinase A K03553 recA; recombination protein RecA D RHA1_ro00572 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D RHA1_ro06788 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D RHA1_ro00934 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D RHA1_ro06213 possible DNA-directed DNA polymerase K14161 imuB; protein ImuB D RHA1_ro06227 dnaE2; DNA-directed DNA polymerase alpha subunit (DNA polymerase III alpha subunit) K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D RHA1_ro01396 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D RHA1_ro03431 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RHA1_ro06766 recX; regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D RHA1_ro01444 probable ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D RHA1_ro06271 probable ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D RHA1_ro05931 MutT/NUDIX hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RHA1_ro03365 possible hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RHA1_ro02192 possible NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RHA1_ro02164 possible MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RHA1_ro06502 possible MutT family hydrolase K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D RHA1_ro00930 probable ADP-ribose diphosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D RHA1_ro06829 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RHA1_ro06441 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RHA1_ro06442 nrdG; ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D RHA1_ro06217 probable ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D RHA1_ro06647 phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024