+E Transcription factors KO #

  Transcription Factors - Rhodococcus sp. B7740

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D NY08_51 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D NY08_4108 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D NY08_3844 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D NY08_3740 Transcriptional regulator, AraC K13653 K13653; AraC family transcriptional regulator D NY08_4972 Methylated-DNA-protein-cysteine methyltransferase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D NY08_1262 Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D NY08_3758 LysR-family transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D NY08_5213 Chromosome initiation inhibitor K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator C DeoR family D NY08_1279 Transcriptional repressor of the fructose operon, DeoR K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor C LacI family D NY08_3134 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NY08_865 transcription regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NY08_2767 ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NY08_113 LacI-family protein transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NY08_115 LacI-family protein transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family D NY08_218 putative transcriptional regulator of N-Acetylglucosamine utilization, GntR K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D NY08_2783 putative transcriptional regulator of N-Acetylglucosamine utilization, GntR K24968 phnF; GntR family transcriptional regulator, repressor of the phnDCE operon D NY08_5246 alkanesulfonate metabolism utilization regulator K03710 K03710; GntR family transcriptional regulator D NY08_13 hypothetical protein K03710 K03710; GntR family transcriptional regulator D NY08_106 Transcriptional regulator, GntR K03710 K03710; GntR family transcriptional regulator D NY08_4019 Transcriptional regulator, GntR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D NY08_69 Transcriptional regulator, GntR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D NY08_267 Transcriptional regulator, GntR family domain / Aspartate aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D NY08_2317 Transcriptional regulator, TetR K09017 rutR; TetR/AcrR family transcriptional regulator D NY08_2517 Transcriptional regulator, TetR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D NY08_1075 Transcriptional regulator, TetR K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase D NY08_4008 Transcriptional regulator, TetR K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response D NY08_2222 Transcriptional regulator, TetR K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response C Lrp/AsnC family D NY08_1769 Transcriptional regulator, AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D NY08_1732 Leucine-responsive regulatory protein, regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D NY08_1414 transcriptional regulator, LuxR K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism C MarR family D NY08_4130 Transcriptional regulator, MarR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D NY08_2586 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D NY08_4044 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D NY08_2721 Transcriptional regulator, MarR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D NY08_2854 Transcriptional regulator MarR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D NY08_2974 Cu-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D NY08_3297 transcriptional regulator, MerR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D NY08_2992 Redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D NY08_2856 HspR, transcriptional repressor of DnaK operon K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR D NY08_3834 transcriptional regulator K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator D NY08_2077 HTH-type transcriptional activator tipA K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator C Fur family D NY08_479 Zinc uptake regulation protein ZUR K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D NY08_4240 Transcriptional regulator, FUR K22297 furA; Fur family transcriptional regulator, stress-responsive regulator D NY08_2040 Transcriptional regulator, FUR K22297 furA; Fur family transcriptional regulator, stress-responsive regulator C IclR family D NY08_3504 Transcriptional regulator, IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D NY08_4439 Transcriptional regulator, IclR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D NY08_391 Pca regulon regulatory protein PcaR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein C CRP/FNR family D NY08_4263 cAMP-binding proteins catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein C Rrf2 family C ArsR family D NY08_3230 Arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D NY08_480 transcriptional regulator, ArsR K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor C XRE family D NY08_4674 Transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator D NY08_1306 hypothetical protein K27043 clgR; XRE family transcriptional regulator, stress-response regulator C PadR family C Other families D NY08_1251 Iron-dependent repressor IdeR/DtxR K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor D NY08_1369 Mn-dependent transcriptional regulator MntR K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D NY08_937 Transcriptional regulator, MecI K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D NY08_1699 Biotin-protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D NY08_4612 hypothetical protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D NY08_4747 Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) K01926 rex; redox-sensing transcriptional repressor D NY08_4472 hypothetical protein K27097 espR; ESX-1-secreted protein regulator D NY08_3599 Transcriptional regulator, Cro/CI K07727 K07727; putative transcriptional regulator D NY08_4660 putative transcriptional regulator K07729 K07729; putative transcriptional regulator D NY08_3562 Transcriptional regulator, Cro/CI K07729 K07729; putative transcriptional regulator D NY08_2509 transcriptional regulator, HTH_3 K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family C Others D NY08_4522 Sporulation regulatory protein WhiD K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D NY08_3100 Sporulation regulatory protein WhiD K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D NY08_4453 Sporulation regulatory protein WhiD K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D NY08_4255 WhiB-type transcription regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D NY08_1840 Sporulation regulatory protein WhiD K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D NY08_1650 WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D NY08_1682 Sporulation regulatory protein WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D NY08_2948 hypothetical protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D NY08_3833 WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D NY08_1611 WhiB-family transcriptional regulator K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D NY08_4758 Repressor CsoR of the copZA operon K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D NY08_503 Chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D NY08_3661 Chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D NY08_4434 CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D NY08_833 Arginine pathway regulatory protein ArgR, repressor of arg regulon K03402 argR; transcriptional regulator of arginine metabolism D NY08_466 Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D NY08_3142 transcription activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D NY08_187 Thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D NY08_4140 membrane protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D NY08_4035 transcriptional regulator K05346 deoR; deoxyribonucleoside regulator D NY08_3277 Deoxyribonucleoside regulator DeoR (transcriptional repressor) K05346 deoR; deoxyribonucleoside regulator D NY08_1136 Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D NY08_3646 hypothetical protein K07735 algH; putative transcriptional regulator D NY08_1862 suppressor protein DnaK K06204 dksA; RNA polymerase-binding transcription factor D NY08_1271 Ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D NY08_695 Cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024 #
Classification taken and modified from TRANSFAC 7.0