+E Transcription factors KO
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Transcription Factors - Rhodococcus sp. B7740
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D NY08_51 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D NY08_4108 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D NY08_3844 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D NY08_3740 Transcriptional regulator, AraC K13653 K13653; AraC family transcriptional regulator
D NY08_4972 Methylated-DNA-protein-cysteine methyltransferase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D NY08_1262 Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D NY08_3758 LysR-family transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D NY08_5213 Chromosome initiation inhibitor K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
C DeoR family
D NY08_1279 Transcriptional repressor of the fructose operon, DeoR K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
C LacI family
D NY08_3134 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NY08_865 transcription regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NY08_2767 ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NY08_113 LacI-family protein transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NY08_115 LacI-family protein transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D NY08_218 putative transcriptional regulator of N-Acetylglucosamine utilization, GntR K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D NY08_2783 putative transcriptional regulator of N-Acetylglucosamine utilization, GntR K24968 phnF; GntR family transcriptional regulator, repressor of the phnDCE operon
D NY08_5246 alkanesulfonate metabolism utilization regulator K03710 K03710; GntR family transcriptional regulator
D NY08_13 hypothetical protein K03710 K03710; GntR family transcriptional regulator
D NY08_106 Transcriptional regulator, GntR K03710 K03710; GntR family transcriptional regulator
D NY08_4019 Transcriptional regulator, GntR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D NY08_69 Transcriptional regulator, GntR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D NY08_267 Transcriptional regulator, GntR family domain / Aspartate aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D NY08_2317 Transcriptional regulator, TetR K09017 rutR; TetR/AcrR family transcriptional regulator
D NY08_2517 Transcriptional regulator, TetR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D NY08_1075 Transcriptional regulator, TetR K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
D NY08_4008 Transcriptional regulator, TetR K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
D NY08_2222 Transcriptional regulator, TetR K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D NY08_1769 Transcriptional regulator, AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D NY08_1732 Leucine-responsive regulatory protein, regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D NY08_1414 transcriptional regulator, LuxR K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism
C MarR family
D NY08_4130 Transcriptional regulator, MarR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D NY08_2586 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D NY08_4044 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D NY08_2721 Transcriptional regulator, MarR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D NY08_2854 Transcriptional regulator MarR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D NY08_2974 Cu-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D NY08_3297 transcriptional regulator, MerR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D NY08_2992 Redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D NY08_2856 HspR, transcriptional repressor of DnaK operon K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D NY08_3834 transcriptional regulator K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator
D NY08_2077 HTH-type transcriptional activator tipA K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator
C Fur family
D NY08_479 Zinc uptake regulation protein ZUR K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D NY08_4240 Transcriptional regulator, FUR K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
D NY08_2040 Transcriptional regulator, FUR K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
C IclR family
D NY08_3504 Transcriptional regulator, IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D NY08_4439 Transcriptional regulator, IclR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D NY08_391 Pca regulon regulatory protein PcaR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D NY08_4263 cAMP-binding proteins catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
C ArsR family
D NY08_3230 Arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D NY08_480 transcriptional regulator, ArsR K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D NY08_4674 Transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D NY08_1306 hypothetical protein K27043 clgR; XRE family transcriptional regulator, stress-response regulator
C PadR family
C Other families
D NY08_1251 Iron-dependent repressor IdeR/DtxR K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D NY08_1369 Mn-dependent transcriptional regulator MntR K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D NY08_937 Transcriptional regulator, MecI K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D NY08_1699 Biotin-protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D NY08_4612 hypothetical protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D NY08_4747 Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) K01926 rex; redox-sensing transcriptional repressor
D NY08_4472 hypothetical protein K27097 espR; ESX-1-secreted protein regulator
D NY08_3599 Transcriptional regulator, Cro/CI K07727 K07727; putative transcriptional regulator
D NY08_4660 putative transcriptional regulator K07729 K07729; putative transcriptional regulator
D NY08_3562 Transcriptional regulator, Cro/CI K07729 K07729; putative transcriptional regulator
D NY08_2509 transcriptional regulator, HTH_3 K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
D NY08_4522 Sporulation regulatory protein WhiD K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D NY08_3100 Sporulation regulatory protein WhiD K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D NY08_4453 Sporulation regulatory protein WhiD K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D NY08_4255 WhiB-type transcription regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D NY08_1840 Sporulation regulatory protein WhiD K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D NY08_1650 WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D NY08_1682 Sporulation regulatory protein WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D NY08_2948 hypothetical protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D NY08_3833 WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D NY08_1611 WhiB-family transcriptional regulator K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D NY08_4758 Repressor CsoR of the copZA operon K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D NY08_503 Chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NY08_3661 Chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NY08_4434 CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D NY08_833 Arginine pathway regulatory protein ArgR, repressor of arg regulon K03402 argR; transcriptional regulator of arginine metabolism
D NY08_466 Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D NY08_3142 transcription activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D NY08_187 Thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D NY08_4140 membrane protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D NY08_4035 transcriptional regulator K05346 deoR; deoxyribonucleoside regulator
D NY08_3277 Deoxyribonucleoside regulator DeoR (transcriptional repressor) K05346 deoR; deoxyribonucleoside regulator
D NY08_1136 Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D NY08_3646 hypothetical protein K07735 algH; putative transcriptional regulator
D NY08_1862 suppressor protein DnaK K06204 dksA; RNA polymerase-binding transcription factor
D NY08_1271 Ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D NY08_695 Cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0