+D Transcription factors KO #

  Transcription Factors - Rhodoferax sp. AJA081-3

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG TOX C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D HZ993_18440 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator D HZ993_22090 helix-turn-helix domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D HZ993_18150 gcvA; transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D HZ993_18405 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D HZ993_19975 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D HZ993_22345 gcvA; transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D HZ993_13830 nhaR; transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D HZ993_20690 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D HZ993_14135 LysR family transcriptional regulator ArgP K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator D HZ993_22335 argP; HTH-type transcriptional regulator ArgP K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator D HZ993_02480 CysB family HTH-type transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D HZ993_13745 CysB family HTH-type transcriptional regulator K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D HZ993_00940 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D HZ993_17915 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D HZ993_14125 LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon C DeoR family D HZ993_01530 DeoR/GlpR transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D HZ993_09905 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D HZ993_23550 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D HZ993_02780 LacI family DNA-binding transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D HZ993_17110 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D HZ993_19820 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D HZ993_09490 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D HZ993_07980 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D HZ993_08925 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D HZ993_23725 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D HZ993_06925 TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D HZ993_18180 slmA; nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D HZ993_13645 TetR family transcriptional regulator C-terminal domain-containing protein K09017 rutR; TetR/AcrR family transcriptional regulator D HZ993_19465 TetR/AcrR family transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D HZ993_17570 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D HZ993_18700 TetR/AcrR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D HZ993_06415 CerR family C-terminal domain-containing protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D HZ993_05945 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D HZ993_09925 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D HZ993_13930 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D HZ993_14850 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D HZ993_15875 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D HZ993_23660 Lrp/AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family C MarR family D HZ993_16975 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D HZ993_03395 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator C Fur family D HZ993_10000 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D HZ993_16585 fur; ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator C IclR family D HZ993_17545 helix-turn-helix domain-containing protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D HZ993_13280 kdgR; DNA-binding transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D HZ993_05745 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D HZ993_06885 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D HZ993_12335 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D HZ993_22050 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D HZ993_04860 fnr; fumarate/nitrate reduction transcriptional regulator Fnr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D HZ993_23535 helix-turn-helix domain-containing protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D HZ993_04690 Fe-S cluster assembly transcription factor K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D HZ993_13835 Rrf2 family transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D HZ993_22165 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D HZ993_06240 winged helix-turn-helix transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D HZ993_13720 winged helix-turn-helix transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family C Other families D HZ993_09715 SIS domain-containing protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D HZ993_12470 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D HZ993_22605 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D HZ993_15605 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D HZ993_19320 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D HZ993_20595 AAA family ATPase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D HZ993_00780 helix-turn-helix transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D HZ993_06910 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D HZ993_20480 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D HZ993_21480 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D HZ993_08660 transcriptional regulator K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family C Others D HZ993_01760 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D HZ993_07230 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D HZ993_14605 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D HZ993_09335 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D HZ993_19395 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D HZ993_08915 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D HZ993_19385 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator D HZ993_18975 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D HZ993_05465 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D HZ993_04360 sigma 54-interacting transcriptional regulator K14414 rtcR; transcriptional regulatory protein RtcR D HZ993_18995 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 21, 2025 #
Classification taken and modified from TRANSFAC 7.0