+D	Transcription factors	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Factors - Rhodococcus sp. M8-50</h2>
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A<b>Eukaryotic type</b>
B  Basic leucine zipper (bZIP)
C    AP-1(-like) components, Jun
C    AP-1(-like) components, Fos
C    AP-1(-like) components, Maf
C    AP-1(-like) components, NF-E2
C    AP-1(-like) components, Fungal regulators
C    AP-1(-like) components, CRE-BP/ATF
C    CREB
C    C/EBP-like factors
C    bZIP/PAR
C    Plant bZIP factors
C    ZIP only
B  Basic helix-loop-helix (bHLH)
C    Ubiquitous (class A) factors
C    Myogenic transcription factors
C    Achaete-Scute
C    Tal/Twist/Atonal/Hen, Lymphoid factors
C    Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C    Tal/Twist/Atonal/Hen, HEN
C    Tal/Twist/Atonal/Hen, Mesp
C    Tal/Twist/Atonal/Hen, Atonal
C    Tal/Twist/Atonal/Hen, Pancreatic factors
C    Hairy, Hairy/E(SPL)
C    Hairy, Fungal regulators
C    Factors with PAS domain
C    Yabby
C    INO
C    HLH domain only
B  Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C    Ubiquitous bHLH-ZIP factors
C    Cell cycle controlling factors, Myc
C    Cell cycle controlling factors, Mad/Max
C    Other bHLH-ZIP factors
B  Other basic domains
C    NF-1
C    RF-X
C    AP-2 (bHSH)
B  Zinc finger
C    Cys4 thyroid hormone receptor-like
C    Cys4 hepatocyte nuclear factor 4-like
C    Cys4 estrogen receptor-like
C    Cys4 nerve growth factor IB-like
C    Cys4 Fushi tarazu-F1-like
C    Cys4 germ cell nuclear factor
C    Cys4 Knirps/DAX1-like
C    Cys4 GATA-factors
C    Cys2His2 SP/KLF family and related proteins
C    Cys2His2 GLI-like
C    Cys2His2 Snail
C    Cys2His2 BTB-ZF factors
C    Cys2His2 BED
C    Cys2His2 PRDM
C    Cys2His2 metabolic regulators in fungi
C    Cys2His2 others
C    Cys2HisCys zinc factors
C    Cys3His zinc factors
C    Cys2CysHis zinc factors
C    CXXC CpG-binding proteins
D      QWW67_19055 dcm; (GenBank) DNA (cytosine-5-)-methyltransferase	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
C    Cys6 metabolic regulators in fungi
C    Other zinc fingers
B  Helix-turn-helix
C    Homeo domain ANTP: HOXL
C    Homeo domain ANTP: NKL
C    Homeo domain Paired-related
C    Homeo domain LIM
C    Homeo domain POU
C    Homeo domain SINE
C    Homeo domain ZF
C    Homeo domain CUT
C    Homeo domain PROS
C    Homeo domain TALE
C    Homeo domain other
C    Fork head/winged helix developmental regulators
C    Fork head/winged helix tissue-specific regulators
C    Fork head/winged helix cell cycle-controlling factors, E2F
C    Fork head/winged helix cell cycle-controlling factors, DP
C    Fork head/winged helix other regulators
C    Stork head/winged helix factors
C    Heat shock factors
C    Tryptophan clusters Myb, Myb-factors
C    Tryptophan clusters Myb, Myb-like factors
C    Tryptophan clusters Ets-type
C    Tryptophan clusters interferon-regulating factors
C    TEA domain
C    ARID
B  beta-Scaffold factors with minor groove contacts
C    RHR (Rel homology region) Rel/Ankyrin
C    RHR (Rel homology region) Ankyrin only
C    RHR (Rel homology region) NF-AT
C    STAT
C    p53
C    MADS-box regulators of differentiation, MEF-2
C    MADS-box regulators of differentiation, Homeotic genes
C    MADS-box regulators of differentiation, Yeast regulators
C    MADS-box responders to external signals
C    SAND domain-containing proteins
C    TATA-binding proteins
C    HMG SOX
C    HMG TCF-1
C    HMG2-related
C    UBF
C    Other HMG box factors
C    Heteromeric CCAAT factors
C    Grainyhead
C    Cold-shock domain factors, DbpA-like
C    Cold-shock domain factors, YB-1/DbpB-like
C    Cold-shock domain factors, FRG Y2-like
C    Runt
C    MYRF
B  Other transcription factors
C    HMGI(Y)
C    NUPR
C    Pocket domain Rb
C    Pocket domain CBP
C    T-box
C    DMRT
C    LRRFIP
C    TCP
C    AP2/ERF
C    WRKY
C    LOB
C    GRAS
C    Copper-fist proteins fungal regulators
C    Others
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A<b>Prokaryotic type</b>
B  Helix-turn-helix
C    AraC family
C    LysR family
D      QWW67_22360 LysR substrate-binding domain-containing protein	K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator 
D      QWW67_19190 LysR family transcriptional regulator ArgP	K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator 
C    DeoR family
D      QWW67_01755 DeoR/GlpR family DNA-binding transcription regulator	K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor 
C    LacI family
D      QWW67_10495 LacI family DNA-binding transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      QWW67_15550 LacI family DNA-binding transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      QWW67_27475 LacI family DNA-binding transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
C    GntR family
D      QWW67_24425 GntR family transcriptional regulator	K24968 phnF; GntR family transcriptional regulator, repressor of the phnDCE operon 
D      QWW67_12910 PLP-dependent aminotransferase family protein	K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase 
C    TetR/AcrR family
D      QWW67_07435 helix-turn-helix domain-containing protein	K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon 
D      QWW67_03075 helix-turn-helix domain-containing protein	K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase 
D      QWW67_12105 TetR family transcriptional regulator	K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator 
D      QWW67_21045 kstR; (GenBank) cholesterol catabolism transcriptional regulator KstR	K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator 
D      QWW67_23245 TetR family transcriptional regulator	K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator 
D      QWW67_11215 TetR/AcrR family transcriptional regulator	K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator 
D      QWW67_15465 TetR/AcrR family transcriptional regulator	K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator 
D      QWW67_21380 TetR/AcrR family transcriptional regulator	K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator 
D      QWW67_08365 mftR; (GenBank) mycofactocin system transcriptional regulator	K24699 mftR; TetR/AcrR family transcriptional regulator, regulator of mycofactocin system 
C    Lrp/AsnC family
D      QWW67_07180 Lrp/AsnC family transcriptional regulator	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
C    LuxR family
D      QWW67_01300 LuxR C-terminal-related transcriptional regulator	K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism 
D      QWW67_13440 LuxR C-terminal-related transcriptional regulator	K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism 
D      QWW67_22240 LuxR C-terminal-related transcriptional regulator	K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism 
D      QWW67_24895 LuxR C-terminal-related transcriptional regulator	K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein 
C    MarR family
D      QWW67_22090 MarR family transcriptional regulator	K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator 
D      QWW67_23405 MarR family transcriptional regulator	K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator 
C    MerR family
D      QWW67_18630 MerR family transcriptional regulator	K19591 cueR; MerR family transcriptional regulator, copper efflux regulator 
D      QWW67_03655 soxR; (GenBank) redox-sensitive transcriptional activator SoxR	K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR 
D      QWW67_09020 soxR; (GenBank) redox-sensitive transcriptional activator SoxR	K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR 
D      QWW67_04525 MerR family transcriptional regulator	K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR 
D      QWW67_10800 helix-turn-helix domain-containing protein	K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR 
D      QWW67_21540 MerR family transcriptional regulator	K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator 
C    Fur family
D      QWW67_05730 Fur family transcriptional regulator	K03711 fur; Fur family transcriptional regulator, ferric uptake regulator 
D      QWW67_17260 Fur family transcriptional regulator	K22297 furA; Fur family transcriptional regulator, stress-responsive regulator 
D      QWW67_20435 Fur family transcriptional regulator	K22297 furA; Fur family transcriptional regulator, stress-responsive regulator 
C    IclR family
D      QWW67_14725 IclR family transcriptional regulator	K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein 
D      QWW67_14875 IclR family transcriptional regulator C-terminal domain-containing protein	K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein 
D      QWW67_21185 IclR family transcriptional regulator C-terminal domain-containing protein	K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein 
C    CRP/FNR family
D      QWW67_20550 Crp/Fnr family transcriptional regulator	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein 
C    Rrf2 family
D      QWW67_24195 Rrf2 family transcriptional regulator	K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor 
C    ArsR family
D      QWW67_13995 metalloregulator ArsR/SmtB family transcription factor	K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor 
D      QWW67_14075 Rv2640c family ArsR-like transcriptional regulator	K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor 
D      QWW67_20260 metalloregulator ArsR/SmtB family transcription factor	K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor 
D      QWW67_05725 metalloregulator ArsR/SmtB family transcription factor	K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor 
C    XRE family
D      QWW67_09550 ramB; (GenBank) acetate metabolism transcriptional regulator RamB	K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator 
D      QWW67_01580 helix-turn-helix transcriptional regulator	K27043 clgR; XRE family transcriptional regulator, stress-response regulator 
C    PadR family
D      QWW67_18750 PadR family transcriptional regulator	K26740 vanR; PadR family transcriptional regulator, regulator of vanillate utilization 
D      QWW67_11135 PadR family transcriptional regulator	K10947 K10947; PadR family transcriptional regulator 
C    Other families
D      QWW67_01870 metal-dependent transcriptional regulator	K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor 
D      QWW67_01435 metal-dependent transcriptional regulator	K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator 
D      QWW67_03695 BlaI/MecI/CopY family transcriptional regulator	K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor 
D      QWW67_07090 biotin--[acetyl-CoA-carboxylase] ligase	K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] 
D      QWW67_08145 helix-turn-helix domain-containing protein	K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR 
D      QWW67_09995 helix-turn-helix domain-containing protein	K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR 
D      QWW67_17015 helix-turn-helix domain-containing protein	K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR 
D      QWW67_09065 redox-sensing transcriptional repressor Rex	K01926 rex; redox-sensing transcriptional repressor 
D      QWW67_23875 helix-turn-helix transcriptional regulator	K07729 K07729; putative transcriptional regulator 
B  Ribbon-helix-helix
C    CopG family
C    Other families
B  Other transcription factors
C    BglG family
C    Others
D      QWW67_00735 WhiB family transcriptional regulator	K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator 
D      QWW67_06440 WhiB family transcriptional regulator	K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator 
D      QWW67_06830 WhiB family transcriptional regulator	K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator 
D      QWW67_06985 WhiB family transcriptional regulator	K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator 
D      QWW67_07690 WhiB family transcriptional regulator	K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator 
D      QWW67_20520 WhiB family transcriptional regulator	K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator 
D      QWW67_21655 WhiB family transcriptional regulator	K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator 
D      QWW67_06640 WhiB family transcriptional regulator	K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator 
D      QWW67_09030 metal-sensitive transcriptional regulator	K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor 
D      QWW67_17335 ParB/RepB/Spo0J family partition protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      QWW67_20970 carD; (GenBank) RNA polymerase-binding transcription factor CarD	K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription 
D      QWW67_03990 arginine repressor	K03402 argR; transcriptional regulator of arginine metabolism 
D      QWW67_05835 hrcA; (GenBank) heat-inducible transcriptional repressor HrcA	K03705 hrcA; heat-inducible transcriptional repressor 
D      QWW67_27710 TenA family protein	K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] 
D      QWW67_02750 pyrR; (GenBank) bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] 
D      QWW67_17195 YqgE/AlgH family protein	K07735 algH; putative transcriptional regulator 
D      QWW67_01785 nrdR; (GenBank) transcriptional regulator NrdR	K07738 nrdR; transcriptional repressor NrdR 
D      QWW67_05105 mraZ; (GenBank) division/cell wall cluster transcriptional repressor MraZ	K03925 mraZ; transcriptional regulator MraZ 
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#Last updated: July 3, 2025
#<br>Classification taken and modified from <a href="http://www.gene-regulation.com/pub/databases.html#transfac">TRANSFAC 7.0</a>