+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Rhodococcus sp. PBTS 1

% ! AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D A3Q40_01335 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D A3Q40_00940 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C A3Q40_01069 era; GTPase Era K03595 era; GTPase C A3Q40_01013 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C A3Q40_02248 yocK; General stress protein 16O K06204 dksA; RNA polymerase-binding transcription factor C A3Q40_01412 hypothetical protein K02600 nusA; transcription termination/antitermination protein NusA C A3Q40_01610 hypothetical protein K03625 nusB; transcription antitermination protein NusB C A3Q40_00324 hypothetical protein K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D A3Q40_02546 ksgA; Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D A3Q40_01625 Putative methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D A3Q40_02409 rlmG; Ribosomal RNA large subunit methyltransferase G K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D A3Q40_01330 rsmD; Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D A3Q40_01065 rsmE; Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D A3Q40_03768 rsmG; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D A3Q40_01208 rsmH; Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D A3Q40_02558 rsmI; Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D A3Q40_01844 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D A3Q40_02307 rlmAII; 23S rRNA (guanine(748)-N(1))-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D A3Q40_03235 putative tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D A3Q40_01382 rlmN; Dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D A3Q40_01844 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D A3Q40_00531 rluA_1; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D A3Q40_02768 rluA_2; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D A3Q40_01833 putative RNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D A3Q40_01233 putative RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D A3Q40_02474 carB_2; rRNA methyltransferase K00561 ermC; 23S rRNA (adenine-N6)-dimethyltransferase [EC:2.1.1.184] D A3Q40_01470 aviRb_1; 23S rRNA (uridine(2479)-2'-O)-methyltransferase K21514 aviRb; 23S rRNA (uridine2479-2'-O)-methyltransferase [EC:2.1.1.208] B ribosomal protein modification factors C A3Q40_02232 mshD_4; Mycothiol acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C A3Q40_02578 ydaF; Putative ribosomal N-acetyltransferase YdaF K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C A3Q40_01356 rimM; Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM B rRNA processing factors C A3Q40_01335 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] C A3Q40_01010 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] C A3Q40_01600 Putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C A3Q40_00512 deaD_1; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C A3Q40_01069 era; GTPase Era K03595 era; GTPase C A3Q40_02011 rsgA; Putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C A3Q40_01831 der; GTPase Der K03977 engA; GTPase C A3Q40_01013 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] C A3Q40_01472 hflX; GTPase HflX K03665 hflX; GTPase B Other maturation factors C A3Q40_00808 Putative threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C A3Q40_01581 relA; Bifunctional (p)ppGpp synthase/hydrolase RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C A3Q40_01416 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C A3Q40_01411 rimP; Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP C A3Q40_03705 hypothetical protein K14761 rlbA; ribosome-associated protein C A3Q40_01032 rsfS; Ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein C A3Q40_01067 ybeY; Endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor C A3Q40_02368 ychF; Ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase C A3Q40_01333 hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024