+D Transcription factors KO
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Transcription Factors - Rhodoplanes sp. Z2-YC6860
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D RHPLAN_63060 site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Stork head/winged helix factors
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG TOX
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C NAC
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D RHPLAN_32480 transcriptional regulator, AraC family protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D RHPLAN_38660 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D RHPLAN_36720 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D RHPLAN_03040 AraC family transcriptional regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RHPLAN_23430 O-6-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RHPLAN_23450 O-6-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D RHPLAN_01390 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D RHPLAN_03340 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D RHPLAN_00860 LysR family transcriptional regulator K05817 hcaR; LysR family transcriptional regulator, hca operon transcriptional activator
D RHPLAN_61370 LysR family transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D RHPLAN_14280 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D RHPLAN_20070 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D RHPLAN_47260 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D RHPLAN_52910 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D RHPLAN_27100 HTH-type transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
C LacI family
D RHPLAN_27260 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D RHPLAN_12890 phosphonates metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D RHPLAN_14210 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D RHPLAN_21920 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D RHPLAN_57740 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D RHPLAN_68930 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D RHPLAN_37950 GntR family transcriptional regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
C TetR/AcrR family
D RHPLAN_07760 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RHPLAN_61940 TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
C Lrp/AsnC family
D RHPLAN_08420 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RHPLAN_66890 Transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D RHPLAN_63540 LuxR family transcriptional regulator K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
C MarR family
D RHPLAN_26600 MarR family transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D RHPLAN_55720 MarR family transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D RHPLAN_08220 MarR family transcriptional regulator K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D RHPLAN_42070 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D RHPLAN_15930 transcriptional regulator, MerR family K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D RHPLAN_46880 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D RHPLAN_40200 redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D RHPLAN_00830 ferric uptake regulator family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RHPLAN_69590 Fe2+/Zn2+ uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D RHPLAN_03850 Iron-responsive regulator Irr K09826 irr; Fur family transcriptional regulator, iron response regulator
C IclR family
D RHPLAN_30720 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D RHPLAN_00650 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D RHPLAN_24570 beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D RHPLAN_37810 beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D RHPLAN_68560 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D RHPLAN_01420 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D RHPLAN_01160 CarD family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RHPLAN_06100 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RHPLAN_10620 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RHPLAN_12450 Crp/FNR family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RHPLAN_12620 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RHPLAN_29500 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RHPLAN_53140 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RHPLAN_69220 Crp/FNR family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RHPLAN_30900 transcriptional activator FtrB K13642 ftrB; CRP/FNR family transcriptional regulator, transcriptional activator FtrB
D RHPLAN_00410 transcriptional regulator, Crp/Fnr family K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein
D RHPLAN_66020 nitrogen fixation regulation protein FixK K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein
C Rrf2 family
D RHPLAN_65650 BadM/Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D RHPLAN_44030 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D RHPLAN_46920 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D RHPLAN_60830 anaerobic benzoate catabolism transcriptional regulator K15546 boxR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator
C PadR family
C Other families
D RHPLAN_65780 RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D RHPLAN_38900 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RHPLAN_10840 ModE family transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D RHPLAN_40920 XRE family transcriptional regulator K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D RHPLAN_17800 nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
D RHPLAN_61070 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D RHPLAN_59300 copper-sensing transcriptional repressor CsoR family protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D RHPLAN_07490 cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D RHPLAN_02360 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RHPLAN_05960 ParB-like partioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RHPLAN_07650 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D RHPLAN_50390 transcription termination factor nusG family protein K05785 rfaH; transcriptional antiterminator RfaH
D RHPLAN_02910 Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D RHPLAN_27170 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase
D RHPLAN_57020 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase
D RHPLAN_05630 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator
D RHPLAN_18240 putative transcriptional regulator K07735 algH; putative transcriptional regulator
D RHPLAN_47670 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D RHPLAN_48850 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D RHPLAN_37500 ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D RHPLAN_34180 Sel1 domain-containing protein repeat-containing protein K25885 exoR; exopolysaccharide production negative regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: September 16, 2025
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Classification taken and modified from TRANSFAC 7.0