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#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Rhizophagus irregularis</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        OCT59_022993 DNA-directed RNA polymerase II subunit rpb1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        OCT59_010982 DNA-dependent RNA polymerase II	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        OCT59_018381 uncharacterized protein	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        OCT59_022446 uncharacterized protein	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        OCT59_010560 uncharacterized protein	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        OCT59_008237 uncharacterized protein	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        OCT59_015302 uncharacterized protein	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        OCT59_016788 uncharacterized protein	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        OCT59_001971 uncharacterized protein	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
E        OCT59_026432 uncharacterized protein	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        OCT59_010694 uncharacterized protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        OCT59_003836 uncharacterized protein	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        OCT59_013176 uncharacterized protein	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        OCT59_013217 uncharacterized protein	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        OCT59_005205 DNA-directed RNA Polymerase II subunit L	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        OCT59_001968 uncharacterized protein	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        OCT59_016691 Transcription initiation factor IIA small chain (TFIIA 13.5 kDa subunit)	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        OCT59_010891 uncharacterized protein	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        OCT59_000723 TATA-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        OCT59_004029 uncharacterized protein	K23358 TAF1; transcription initiation factor TFIID subunit 1, fungi type [EC:2.3.1.48] 
E        OCT59_015030 uncharacterized protein	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        OCT59_009177 uncharacterized protein	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        OCT59_006479 uncharacterized protein	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        OCT59_016335 uncharacterized protein	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        OCT59_014978 uncharacterized protein	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        OCT59_021920 uncharacterized protein	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        OCT59_022763 uncharacterized protein	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        OCT59_020350 uncharacterized protein	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        OCT59_028942 uncharacterized protein	K03140 TAF14; transcription initiation factor TFIID/TFIIF subunit 
D      TFIIE
E        OCT59_020639 uncharacterized protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        OCT59_003879 uncharacterized protein	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        OCT59_005806 uncharacterized protein	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
E        OCT59_008255 uncharacterized protein	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        OCT59_009571 uncharacterized protein	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        OCT59_009182 uncharacterized protein	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        OCT59_021751 uncharacterized protein	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        OCT59_015149 transcription factor TFIIH complex ERCC-3 subunit	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        OCT59_011027 DNA-dependent ATPase of the nucleotide excision repair factor 4 complex	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        OCT59_018155 uncharacterized protein	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        OCT59_008119 uncharacterized protein	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        OCT59_008264 uncharacterized protein	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        OCT59_010835 uncharacterized protein	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        OCT59_011024 uncharacterized protein	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        OCT59_014255 uncharacterized protein	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        OCT59_022695 uncharacterized protein	K15130 MED8; mediator of RNA polymerase II transcription subunit 8, fungi type 
E        OCT59_027014 uncharacterized protein	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        OCT59_005331 uncharacterized protein	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
D      Middle
E        OCT59_005161 uncharacterized protein	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        OCT59_004501 uncharacterized protein	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        OCT59_005673 uncharacterized protein	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        OCT59_007500 uncharacterized protein	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
D      CDK-module
E        OCT59_006703 cyclin-dependent protein kinase	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        OCT59_018455 uncharacterized protein	K15161 CCNC; cyclin-C 
D      Other mediators
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        OCT59_009159 uncharacterized protein	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        OCT59_019479 uncharacterized protein	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        OCT59_029733 uncharacterized protein	K08874 TRRAP; transformation/transcription domain-associated protein 
E        OCT59_014071 uncharacterized protein	K11313 SUPT3H; transcription initiation protein SPT3 
E        OCT59_026417 uncharacterized protein	K11360 SPT8; transcriptional activator SPT8 
E        OCT59_030010 uncharacterized protein	K11314 TADA2A; transcriptional adapter 2-alpha 
E        OCT59_015030 uncharacterized protein	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        OCT59_009177 uncharacterized protein	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        OCT59_006479 uncharacterized protein	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        OCT59_016335 uncharacterized protein	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        OCT59_014978 uncharacterized protein	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        OCT59_021920 uncharacterized protein	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        OCT59_010373 uncharacterized protein	K11364 SGF29; SAGA-associated factor 29 
E        OCT59_024887 uncharacterized protein	K11365 SGF73; SAGA-associated factor 73 
E        OCT59_003796 uncharacterized protein	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        OCT59_024886 uncharacterized protein	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        OCT59_011374 uncharacterized protein	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        OCT59_005116 uncharacterized protein	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        OCT59_023314 uncharacterized protein	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        OCT59_024910 uncharacterized protein	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        OCT59_005357 uncharacterized protein	K11652 ACTL6B; actin-like protein 6B 
D      SWI/SNF complex
E        OCT59_022196 uncharacterized protein	K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] 
E        OCT59_030161 uncharacterized protein	K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] 
E        OCT59_028942 uncharacterized protein	K03140 TAF14; transcription initiation factor TFIID/TFIIF subunit 
D      RSC complex
E        OCT59_003140 uncharacterized protein	K11763 RSC9; chromatin structure-remodeling complex subunit RSC9 
E        OCT59_022385 uncharacterized protein	K11770 SFH1; chromatin structure-remodeling complex subunit SFH1 
E        OCT59_022196 uncharacterized protein	K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] 
E        OCT59_030161 uncharacterized protein	K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] 
D      Others
E        OCT59_021994 uncharacterized protein	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
C    Other transcription-related factors
D      Transcription elongation factors
E        OCT59_011001 uncharacterized protein	K03145 TFIIS; transcription elongation factor S-II 
E        OCT59_026357 uncharacterized protein	K15172 SUPT5H; transcription elongation factor SPT5 
D      Transcription termination factor
E        OCT59_001932 uncharacterized protein	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        OCT59_002009 uncharacterized protein	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        OCT59_004285 uncharacterized protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        OCT59_009180 uncharacterized protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        OCT59_026147 uncharacterized protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        OCT59_013910 uncharacterized protein	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        OCT59_024510 uncharacterized protein	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        OCT59_018864 RNA polymerase II subunit A C-terminal domain phosphatase	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        OCT59_000667 uncharacterized protein	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        OCT59_021616 uncharacterized protein	K14845 RAI1; RAT1-interacting protein 
E        OCT59_013103 uncharacterized protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        OCT59_023124 uncharacterized protein	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        OCT59_010752 uncharacterized protein	K15175 CDC73; parafibromin 
E        OCT59_026425 uncharacterized protein	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        OCT59_020625 uncharacterized protein	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        OCT59_010290 uncharacterized protein	K15181 TH1L; negative elongation factor C/D 
D      Super elongation complex (SEC)
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
D      BUR kinase complex
E        OCT59_027019 uncharacterized protein	K15562 BUR1; serine/threonine-protein kinase BUR1 [EC:2.7.11.22 2.7.11.23] 
E        OCT59_005428 uncharacterized protein	K15563 BUR2; protein BUR2 
E        OCT59_015089 uncharacterized protein	K15563 BUR2; protein BUR2 
E        OCT59_027353 uncharacterized protein	K15563 BUR2; protein BUR2 
D      CTDK-I complex
E        OCT59_020348 uncharacterized protein	K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23] 
E        OCT59_025720 uncharacterized protein	K15564 CTK2; CTD kinase subunit beta 
D      7SK RNP complex
D      DBIRD complex
D      Others
E        OCT59_017343 uncharacterized protein	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        OCT59_026382 uncharacterized protein	K21751 DR1; down-regulator of transcription 1 
E        OCT59_028364 uncharacterized protein	K21752 DRAP1; Dr1-associated corepressor 
E        OCT59_005145 uncharacterized protein	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        OCT59_016387 uncharacterized protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        OCT59_009197 uncharacterized protein	K17498 SPN1; transcription factor SPN1 
E        OCT59_018112 uncharacterized protein	K06666 TUP1; general transcriptional corepressor TUP1 
E        OCT59_020644 uncharacterized protein	K12412 MCM1; pheromone receptor transcription factor 
E        OCT59_023089 uncharacterized protein	K12412 MCM1; pheromone receptor transcription factor 
E        OCT59_005584 uncharacterized protein	K24104 GPN; GPN-loop GTPase 
E        OCT59_014634 GPN-loop GTPase 2	K24104 GPN; GPN-loop GTPase 
E        OCT59_021727 uncharacterized protein	K24104 GPN; GPN-loop GTPase 
E        OCT59_004300 uncharacterized protein	K28237 SLC7A6OS; RNA polymerase II nuclear localization protein 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        OCT59_001912 uncharacterized protein	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        OCT59_000741 DNA-directed RNA polymerase III subunit	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        OCT59_014597 uncharacterized protein	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        OCT59_026366 RNA polymerase subunit AC19	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        OCT59_008181 uncharacterized protein	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        OCT59_022405 uncharacterized protein	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        OCT59_013375 uncharacterized protein	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        OCT59_022389 uncharacterized protein	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        OCT59_012579 uncharacterized protein	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        OCT59_013845 uncharacterized protein	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        OCT59_019475 uncharacterized protein	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        OCT59_010694 uncharacterized protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        OCT59_003836 uncharacterized protein	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        OCT59_013176 uncharacterized protein	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        OCT59_013217 uncharacterized protein	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        OCT59_005205 DNA-directed RNA Polymerase II subunit L	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
D      TFIIIB
E        OCT59_000723 TATA-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        OCT59_025143 uncharacterized protein	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
D      TFIIIC
E        OCT59_022071 uncharacterized protein	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        OCT59_010886 uncharacterized protein	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
D      TFIIIC, fungi type
E        OCT59_010886 uncharacterized protein	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        OCT59_022071 uncharacterized protein	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        OCT59_019485 uncharacterized protein	K15205 TFC6; transcription factor C subunit 6 
E        OCT59_004019 uncharacterized protein	K15206 TFC7; transcription factor C subunit 7 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
D      Octamer transcription factors
D      Others
E        OCT59_003161 uncharacterized protein	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        OCT59_014560 uncharacterized protein	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        OCT59_019476 uncharacterized protein	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        OCT59_014597 uncharacterized protein	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        OCT59_026366 RNA polymerase subunit AC19	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        OCT59_012145 uncharacterized protein	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        OCT59_029584 uncharacterized protein	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        OCT59_022985 uncharacterized protein	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        OCT59_010694 uncharacterized protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        OCT59_003836 uncharacterized protein	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        OCT59_013176 uncharacterized protein	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        OCT59_013217 uncharacterized protein	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        OCT59_005205 DNA-directed RNA Polymerase II subunit L	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        OCT59_000723 TATA-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
D      Transcription initiation factors
E        OCT59_018039 uncharacterized protein	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        OCT59_021684 uncharacterized protein	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        OCT59_026357 uncharacterized protein	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        OCT59_005284 uncharacterized protein	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
E        OCT59_020348 uncharacterized protein	K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23] 
E        OCT59_025720 uncharacterized protein	K15564 CTK2; CTD kinase subunit beta 
D      Transcription termination factors
D      Others
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A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        OCT59_010891 uncharacterized protein	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        OCT59_020639 uncharacterized protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
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#Last updated: April 17, 2025