+D GENES KO
#
KEGG Orthology (KO) - Roseburia intestinalis M50/1
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:rim00010]
D ROI_01400 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D ROI_01310 Transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
D ROI_06920 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D ROI_37250 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D ROI_40970 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D ROI_13400 Uncharacterized protein conserved in bacteria K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D ROI_30080 fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D ROI_38920 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D ROI_38900 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D ROI_38910 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D ROI_32090 Fructose-2,6-bisphosphatase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D ROI_38940 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D ROI_15370 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ROI_38650 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ROI_29080 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D ROI_19500 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D ROI_40260 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D ROI_40270 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D ROI_19110 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D ROI_01790 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D ROI_25220 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D ROI_39060 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D ROI_34030 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D ROI_36270 alpha-phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D ROI_22220 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:rim00020]
D ROI_26170 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D ROI_22180 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D ROI_05900 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D ROI_22460 Isopropylmalate/homocitrate/citramalate synthases K05942 E2.3.3.3; citrate (Re)-synthase [EC:2.3.3.3]
D ROI_34560 Aconitase A K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D ROI_22480 isocitrate dehydrogenase, NADP-dependent, eukaryotic type K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D ROI_32300 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D ROI_32280 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D ROI_22220 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D ROI_40260 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D ROI_40270 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D ROI_19110 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:rim00030]
D ROI_06920 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D ROI_10960 3-carboxymuconate cyclase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D ROI_28050 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D ROI_39030 Transketolase, N-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D ROI_39040 Transketolase, C-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D ROI_41370 Transketolase, N-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D ROI_41380 Transketolase, C-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D ROI_39020 transaldolase, putative, TalC family K00616 TALDO1; transaldolase [EC:2.2.1.2]
D ROI_27940 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D ROI_16450 Phosphoketolase K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D ROI_25430 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D ROI_36270 alpha-phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D ROI_15520 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D ROI_35560 Entner-Doudoroff aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D ROI_08940 Sugar kinases, ribokinase family K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D ROI_08950 Sugar kinases, ribokinase family K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D ROI_30080 fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D ROI_13400 Uncharacterized protein conserved in bacteria K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D ROI_37250 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D ROI_40970 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:rim00040]
D ROI_13760 Pectin methylesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D ROI_19790 Cupin domain. K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25]
D ROI_24050 4-deoxy-L-threo-5-hexulose uronate isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D ROI_24040 D-glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D ROI_24020 tagaturonate reductase K00041 uxaB; tagaturonate reductase [EC:1.1.1.58]
D ROI_24010 D-altronate dehydratase K01685 uxaA; altronate hydrolase [EC:4.2.1.7]
D ROI_04010 D-mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D ROI_04070 Mannitol-1-phosphate/altronate dehydrogenases K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D ROI_10030 Beta-galactosidase/beta-glucuronidase K01195 uidA; beta-glucuronidase [EC:3.2.1.31]
D ROI_08330 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D ROI_23880 Sugar phosphate isomerases/epimerases K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D ROI_39050 L-ribulose 5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D ROI_28050 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D ROI_39010 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D ROI_38750 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D ROI_38250 Threonine dehydrogenase and related Zn-dependent dehydrogenases K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D ROI_04790 4-diphosphocytidyl-2-methyl-D-erithritol synthase K21030 tarI; D-ribitol-5-phosphate cytidylyltransferase [EC:2.7.7.40]
D ROI_13770 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:rim00051]
D ROI_01180 Beta-mannanase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D ROI_38280 Sugar kinases, ribokinase family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D ROI_33930 Sugar kinases, ribokinase family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D ROI_08290 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D ROI_08270 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D ROI_08280 Nucleoside-diphosphate-sugar epimerases K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D ROI_13770 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D ROI_37250 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D ROI_40970 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D ROI_13400 Uncharacterized protein conserved in bacteria K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D ROI_34310 fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D ROI_38250 Threonine dehydrogenase and related Zn-dependent dehydrogenases K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D ROI_30080 fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D ROI_38920 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D ROI_33890 Beta-fructosidases (levanase/invertase) K03332 fruA; fructan beta-fructosidase [EC:3.2.1.80]
D ROI_27940 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D ROI_34320 PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4) K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
C 00052 Galactose metabolism [PATH:rim00052]
D ROI_39060 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D ROI_34030 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D ROI_38010 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D ROI_38020 UTP-hexose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D ROI_04580 Nucleoside-diphosphate-sugar epimerases K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ROI_04940 3-beta hydroxysteroid dehydrogenase/isomerase family. K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ROI_21590 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ROI_36270 alpha-phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D ROI_01400 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D ROI_01310 Transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
D ROI_31500 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_37980 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_09850 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_31510 Beta galactosidase small chain. K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_41150 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_09940 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_10010 Beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D ROI_24750 Beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D ROI_37780 Beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D ROI_08660 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D ROI_26950 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D ROI_36280 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D ROI_33920 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D ROI_10050 Melibiase. K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D ROI_37250 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D ROI_40970 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D ROI_15470 Alpha-glucosidases, family 31 of glycosyl hydrolases K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D ROI_21310 Glycosidases K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D ROI_37040 Glycosidases K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D ROI_33910 Glycosidases K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
C 00053 Ascorbate and aldarate metabolism [PATH:rim00053]
D ROI_08330 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D ROI_10030 Beta-galactosidase/beta-glucuronidase K01195 uidA; beta-glucuronidase [EC:3.2.1.31]
D ROI_23880 Sugar phosphate isomerases/epimerases K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D ROI_39050 L-ribulose 5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
C 00500 Starch and sucrose metabolism [PATH:rim00500]
D ROI_15470 Alpha-glucosidases, family 31 of glycosyl hydrolases K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D ROI_06530 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_27260 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_32360 exo-1,4-beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_37790 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_00400 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_00440 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_01160 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_01170 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_36380 mannose-6-phosphate isomerase, class I/beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D ROI_29110 cellobiose phosphorylase K00702 E2.4.1.20; cellobiose phosphorylase [EC:2.4.1.20]
D ROI_20400 hypothetical protein K00702 E2.4.1.20; cellobiose phosphorylase [EC:2.4.1.20]
D ROI_15570 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D ROI_15580 glucose-1-phosphate adenylyltransferase, GlgD subunit K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D ROI_22550 glycogen/starch synthases, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D ROI_25000 glycogen/starch synthases, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D ROI_34590 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D ROI_08860 glycogen/starch/alpha-glucan phosphorylases K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D ROI_00560 glycogen/starch/alpha-glucan phosphorylases K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D ROI_37050 pullulanase, type I K01200 pulA; pullulanase [EC:3.2.1.41]
D ROI_03530 Glycosidases K01176 AMY; alpha-amylase [EC:3.2.1.1]
D ROI_33260 Glycosidases K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135]
D ROI_08580 Glycosidases K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135]
D ROI_21310 Glycosidases K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D ROI_37040 Glycosidases K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D ROI_33910 Glycosidases K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D ROI_26720 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D ROI_03490 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D ROI_36950 Predicted phosphatase/phosphohexomutase K01838 pgmB; beta-phosphoglucomutase [EC:5.4.2.6]
D ROI_13780 Type II secretory pathway, pullulanase PulA and related glycosidases K01214 ISA; isoamylase [EC:3.2.1.68]
D ROI_20770 Type II secretory pathway, pullulanase PulA and related glycosidases K01214 ISA; isoamylase [EC:3.2.1.68]
D ROI_36270 alpha-phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D ROI_01400 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D ROI_01310 Transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
D ROI_06920 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D ROI_38280 Sugar kinases, ribokinase family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D ROI_33930 Sugar kinases, ribokinase family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rim00520]
D ROI_35740 Beta-glucosidase-related glycosidases K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D ROI_20390 chitobiose phosphorylase K18675 chbP; N,N'-diacetylchitobiose phosphorylase [EC:2.4.1.280]
D ROI_19160 PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2) K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D ROI_06910 N-acetylglucosamine 6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D ROI_06900 glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D ROI_38280 Sugar kinases, ribokinase family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D ROI_33930 Sugar kinases, ribokinase family K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D ROI_36100 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D ROI_04390 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D ROI_15600 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D ROI_24530 hypothetical protein K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D ROI_41240 UDP-glucose pyrophosphorylase K00972 UAP1; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase [EC:2.7.7.23 2.7.7.83]
D ROI_15660 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D ROI_30030 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D ROI_25660 Putative N-acetylmannosamine-6-phosphate epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D ROI_16610 Alpha-L-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D ROI_32930 Alpha-L-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D ROI_16900 Alpha-L-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D ROI_20220 Alpha-L-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D ROI_33080 Alpha-L-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D ROI_04800 Nucleoside-diphosphate-sugar epimerases K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D ROI_22640 Beta-xylosidase K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D ROI_32790 Beta-xylosidase K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D ROI_33050 Beta-xylosidase K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D ROI_23910 Beta-xylosidase K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D ROI_37890 Beta-xylosidase K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D ROI_01400 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D ROI_01310 Transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
D ROI_36270 alpha-phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D ROI_08330 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D ROI_38010 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D ROI_38020 UTP-hexose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D ROI_04580 Nucleoside-diphosphate-sugar epimerases K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ROI_04940 3-beta hydroxysteroid dehydrogenase/isomerase family. K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ROI_21590 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ROI_08660 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D ROI_06920 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D ROI_08290 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D ROI_08270 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D ROI_08280 Nucleoside-diphosphate-sugar epimerases K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D ROI_15570 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D ROI_15580 glucose-1-phosphate adenylyltransferase, GlgD subunit K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:rim00620]
D ROI_40260 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D ROI_40270 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D ROI_19110 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D ROI_16660 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D ROI_10470 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D ROI_40930 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D ROI_29080 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D ROI_41120 Acylphosphatases K01512 acyP; acylphosphatase [EC:3.6.1.7]
D ROI_01790 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D ROI_25220 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D ROI_38260 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily. K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D ROI_09170 Zn-dependent hydrolases, including glyoxylases K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D ROI_11900 Malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D ROI_21900 Pyruvate/oxaloacetate carboxyltransferase K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D ROI_21890 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D ROI_32300 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D ROI_32280 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D ROI_22220 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D ROI_19500 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D ROI_30650 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ROI_02210 Isopropylmalate/homocitrate/citramalate synthases K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rim00630]
D ROI_26170 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D ROI_22180 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D ROI_05900 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D ROI_34560 Aconitase A K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D ROI_30650 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ROI_06600 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D ROI_19070 Predicted phosphatases K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D ROI_00530 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D ROI_30090 Uncharacterized protein related to glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ROI_12950 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ROI_00800 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D ROI_38980 lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
D ROI_33300 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region K03779 ttdA; L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32]
D ROI_33310 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region K03780 ttdB; L(+)-tartrate dehydratase beta subunit [EC:4.2.1.32]
D ROI_35560 Entner-Doudoroff aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
C 00640 Propanoate metabolism [PATH:rim00640]
D ROI_10470 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D ROI_40930 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D ROI_40260 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D ROI_40270 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D ROI_16660 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D ROI_30670 Acyl-CoA dehydrogenases K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D ROI_01790 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D ROI_25220 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D ROI_26280 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D ROI_22980 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D ROI_31530 Methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D ROI_38980 lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
C 00650 Butanoate metabolism [PATH:rim00650]
D ROI_30650 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ROI_30660 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D ROI_08630 Enoyl-CoA hydratase/carnithine racemase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17]
D ROI_30670 Acyl-CoA dehydrogenases K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D ROI_21890 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D ROI_21880 Biotin carboxyl carrier protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D ROI_21870 sodium pump decarboxylases, gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
D ROI_16660 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D ROI_40260 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D ROI_40270 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D ROI_19110 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D ROI_35410 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ROI_13130 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ROI_24400 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D ROI_35420 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:rim00660]
D ROI_35410 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ROI_13130 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ROI_24400 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D ROI_35420 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D ROI_24350 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D ROI_24340 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D ROI_13100 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:rim00562]
D ROI_37690 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D ROI_38920 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:rim00190]
D ROI_34140 ATP synthase F1 subcomplex alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D ROI_34160 ATP synthase F1 subcomplex beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D ROI_01130 ATP synthase F1 subcomplex beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D ROI_01120 ATP synthase, F1 gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D ROI_34150 ATP synthase F1 subcomplex gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D ROI_01100 ATP synthase, F1 delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D ROI_34130 ATP synthase F1 subcomplex delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D ROI_34170 ATP synthase F1 subcomplex epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D ROI_01140 ATP synthase F1 subcomplex epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D ROI_34100 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D ROI_01090 ATP synthase F0 subcomplex B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D ROI_01080 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D ROI_34110 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D ROI_35830 Archaeal/vacuolar-type H+-ATPase subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D ROI_35840 Archaeal/vacuolar-type H+-ATPase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D ROI_35780 Archaeal/vacuolar-type H+-ATPase subunit C K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C
D ROI_35850 H(+)-transporting ATP synthase, vacuolar type, subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D ROI_35810 Archaeal/vacuolar-type H+-ATPase subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D ROI_35770 hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H
D ROI_35800 ATP synthase subunit C. K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D ROI_19190 Inorganic pyrophosphatase/exopolyphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
D ROI_40340 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D ROI_21490 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:rim00680]
D ROI_00800 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D ROI_15370 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ROI_38650 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ROI_30080 fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D ROI_13400 Uncharacterized protein conserved in bacteria K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D ROI_37250 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D ROI_40970 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D ROI_10470 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D ROI_40930 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D ROI_40260 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D ROI_40270 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D ROI_32090 Fructose-2,6-bisphosphatase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D ROI_38940 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D ROI_13150 Phosphoglycerate dehydrogenase and related dehydrogenases K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D ROI_13140 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D ROI_10740 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
C 00910 Nitrogen metabolism [PATH:rim00910]
D ROI_37590 hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D ROI_29330 hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D ROI_21600 Dioxygenases related to 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D ROI_01880 Glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D ROI_30090 Uncharacterized protein related to glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ROI_12950 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ROI_11740 Glutamate synthase domain 2 K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D ROI_26450 sulfide dehydrogenase (flavoprotein) subunit SudA K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D ROI_11750 glutamate synthase (NADH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D ROI_29070 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00920 Sulfur metabolism [PATH:rim00920]
D ROI_15940 sulfate/thiosulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D ROI_15950 sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D ROI_15960 sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D ROI_15970 sulfate ABC transporter, ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D ROI_16010 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D ROI_16000 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D ROI_21690 Exopolyphosphatase-related proteins K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D ROI_35190 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D ROI_01610 Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits K00385 asrC; anaerobic sulfite reductase subunit C
D ROI_07640 Rhodanese-related sulfurtransferase K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D ROI_02290 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D ROI_25170 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D ROI_19210 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:rim00061]
D ROI_01690 acyl carrier protein K02078 acpP; acyl carrier protein
D ROI_10520 acyl carrier protein K02078 acpP; acyl carrier protein
D ROI_01710 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D ROI_01720 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ROI_13790 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ROI_01740 beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D ROI_01700 putative enoyl-(acyl-carrier-protein) reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:rim00071]
D ROI_30650 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ROI_30670 Acyl-CoA dehydrogenases K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:rim00561]
D ROI_40520 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D ROI_10510 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D ROI_16820 Predicted membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D ROI_11240 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D ROI_16750 1-acyl-sn-glycerol-3-phosphate acyltransferases K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D ROI_16830 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D ROI_26950 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D ROI_36280 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D ROI_33920 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D ROI_10050 Melibiase. K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:rim00564]
D ROI_11250 glycerol 3-phosphate dehydrogenase (NAD(P)+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D ROI_40540 Predicted dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D ROI_16820 Predicted membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D ROI_11240 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D ROI_16750 1-acyl-sn-glycerol-3-phosphate acyltransferases K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D ROI_40310 Lysophospholipase K01048 pldB; lysophospholipase [EC:3.1.1.5]
D ROI_06320 Glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D ROI_06350 Glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D ROI_40300 Glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D ROI_21390 CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D ROI_23560 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D ROI_38500 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D ROI_05890 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D ROI_21790 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D ROI_05920 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes K06132 clsC; cardiolipin synthase C [EC:2.7.8.-]
D ROI_05960 Phosphatidylglycerophosphate synthase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
D ROI_37560 Glycerol dehydrogenase and related enzymes K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:rim00600]
D ROI_31500 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_37980 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_09850 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_31510 Beta galactosidase small chain. K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_41150 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_09940 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_26950 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D ROI_36280 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D ROI_33920 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D ROI_10050 Melibiase. K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:rim00230]
D ROI_25310 NTP pyrophosphohydrolases including oxidative damage repair enzymes K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D ROI_25430 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D ROI_36270 alpha-phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D ROI_15520 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D ROI_38960 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D ROI_35980 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D ROI_35970 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D ROI_38830 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D ROI_35960 phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D ROI_35950 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D ROI_38950 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D ROI_38970 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D ROI_10450 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D ROI_10440 IMP cyclohydrolase-like protein. K11176 purO; IMP cyclohydrolase [EC:3.5.4.10]
D ROI_34500 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D ROI_34400 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D ROI_26660 purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D ROI_12930 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D ROI_07680 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D ROI_30870 GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D ROI_22230 Uncharacterized protein conserved in bacteria K00942 gmk; guanylate kinase [EC:2.7.4.8]
D ROI_33450 Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D ROI_28460 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D ROI_28290 deoxyguanosinetriphosphate triphosphohydrolase, putative K01129 dgt; dGTPase [EC:3.1.5.1]
D ROI_09160 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D ROI_21480 Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D ROI_41250 Uncharacterized protein conserved in bacteria K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D ROI_37300 Uncharacterized protein conserved in bacteria K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D ROI_38510 Uncharacterized protein conserved in bacteria K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D ROI_07970 adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D ROI_26240 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D ROI_11050 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D ROI_36180 adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2]
D ROI_34460 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D ROI_14170 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D ROI_16010 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D ROI_16000 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D ROI_29070 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:rim00240]
D ROI_30610 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D ROI_30600 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D ROI_28180 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D ROI_28190 Aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D ROI_09110 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D ROI_09130 dihydroorotate dehydrogenase (subfamily 1) family protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D ROI_09120 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D ROI_08780 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D ROI_13830 orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D ROI_21360 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D ROI_12580 MAF protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D ROI_29970 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D ROI_21940 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D ROI_23110 hypothetical protein K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D ROI_28250 Uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D ROI_24930 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D ROI_34500 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D ROI_34400 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D ROI_34060 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D ROI_34460 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D ROI_22730 thymidine phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2]
D ROI_22190 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D ROI_28460 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D ROI_34070 Deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D ROI_11260 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D ROI_22860 Predicted alternative thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:rim00250]
D ROI_38040 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D ROI_23660 Aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D ROI_26810 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D ROI_13490 aspartate--ammonia ligase, AsnA-type K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D ROI_08230 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D ROI_18060 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D ROI_17880 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D ROI_24580 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D ROI_26240 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D ROI_11050 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D ROI_38970 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D ROI_28180 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D ROI_28190 Aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D ROI_11740 Glutamate synthase domain 2 K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D ROI_26450 sulfide dehydrogenase (flavoprotein) subunit SudA K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D ROI_11750 glutamate synthase (NADH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D ROI_01880 Glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D ROI_30090 Uncharacterized protein related to glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ROI_12950 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ROI_30610 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D ROI_30600 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D ROI_36100 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D ROI_38960 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:rim00260]
D ROI_04100 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D ROI_24570 aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D ROI_30560 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D ROI_10740 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
D ROI_22110 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D ROI_26820 L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D ROI_00800 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D ROI_32090 Fructose-2,6-bisphosphatase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D ROI_38940 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D ROI_13150 Phosphoglycerate dehydrogenase and related dehydrogenases K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D ROI_13140 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D ROI_02610 L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D ROI_02620 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D ROI_10560 threonine dehydratase, medium form K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D ROI_26840 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D ROI_26850 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D ROI_19600 pyridoxal-phosphate dependent TrpB-like enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:rim00270]
D ROI_02290 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D ROI_24840 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D ROI_10180 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D ROI_15700 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D ROI_13430 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D ROI_10770 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D ROI_26650 Cytosine deaminase and related metal-dependent hydrolases K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D ROI_17140 methylthioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D ROI_02060 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ROI_11980 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ROI_31930 Site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ROI_10760 LuxS protein involved in autoinducer AI2 synthesis K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D ROI_04100 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D ROI_24570 aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D ROI_30560 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D ROI_25170 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D ROI_19210 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D ROI_02280 O-acetylhomoserine sulfhydrolase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D ROI_15170 O-acetylhomoserine sulfhydrolase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D ROI_00500 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D ROI_38040 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D ROI_01790 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D ROI_25220 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D ROI_02610 L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D ROI_02620 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D ROI_13150 Phosphoglycerate dehydrogenase and related dehydrogenases K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D ROI_13140 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:rim00280]
D ROI_00500 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D ROI_30670 Acyl-CoA dehydrogenases K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D ROI_30650 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rim00290]
D ROI_10560 threonine dehydratase, medium form K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D ROI_24350 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D ROI_24340 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D ROI_13100 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D ROI_35410 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ROI_13130 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ROI_24400 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D ROI_35420 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D ROI_24390 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D ROI_06880 Dihydroxyacid dehydratase/phosphogluconate dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D ROI_13120 Dihydroxyacid dehydratase/phosphogluconate dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D ROI_00500 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D ROI_02210 Isopropylmalate/homocitrate/citramalate synthases K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:rim00300]
D ROI_30560 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D ROI_04100 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D ROI_24570 aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D ROI_13380 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D ROI_13390 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D ROI_17940 acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D ROI_25930 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D ROI_19220 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D ROI_10700 LL-diaminopimelate aminotransferase apoenzyme K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D ROI_00670 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D ROI_28160 UDP-N-acetylmuramyl-tripeptide synthetases K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D ROI_16740 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation
D ROI_30650 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00220 Arginine biosynthesis [PATH:rim00220]
D ROI_17880 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D ROI_24580 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D ROI_33660 urea carboxylase K01941 uca; urea carboxylase [EC:6.3.4.6]
D ROI_33670 allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54]
D ROI_30090 Uncharacterized protein related to glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ROI_12950 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ROI_30610 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D ROI_30600 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D ROI_29070 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D ROI_01880 Glutamate dehydrogenase/leucine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D ROI_38040 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D ROI_17920 glutamate N-acetyltransferase/amino-acid acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D ROI_17910 N-acetylglutamate synthase K22477 argO; N-acetylglutamate synthase [EC:2.3.1.1]
D ROI_17930 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D ROI_17940 acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:rim00330]
D ROI_04050 Uncharacterized protein, putative amidase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10]
D ROI_25640 N-methylhydantoinase A/acetone carboxylase, beta subunit K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]
D ROI_33440 Arginine/lysine/ornithine decarboxylases K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D ROI_13420 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D ROI_13460 agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D ROI_13470 N-carbamoylputrescine amidase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D ROI_13430 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D ROI_13450 carboxynorspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96]
D ROI_08590 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D ROI_24210 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D ROI_38040 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:rim00340]
D ROI_23430 ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D ROI_23380 phosphoribosyl-ATP pyrophosphohydrolase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D ROI_12940 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D ROI_10120 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D ROI_10130 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D ROI_23390 Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D ROI_38050 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D ROI_38890 histidinol phosphate phosphatase HisJ family K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D ROI_23400 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:rim00350]
D ROI_38040 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D ROI_38050 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00360 Phenylalanine metabolism [PATH:rim00360]
D ROI_30660 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D ROI_38040 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D ROI_38050 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism
D ROI_30650 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rim00400]
D ROI_34900 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D ROI_25280 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D ROI_23070 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D ROI_17030 3-dehydroquinate dehydratase, type I K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D ROI_25260 3-dehydroquinate dehydratase, type I K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D ROI_17080 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D ROI_15640 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D ROI_13000 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D ROI_12990 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D ROI_26890 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D ROI_26830 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D ROI_26880 indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D ROI_26840 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D ROI_26850 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D ROI_19600 pyridoxal-phosphate dependent TrpB-like enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D ROI_21460 Prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D ROI_30550 ACT domain-containing protein K06209 pheB; chorismate mutase [EC:5.4.99.5]
D ROI_22370 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D ROI_38040 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D ROI_38050 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:rim00410]
D ROI_32320 L-aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D ROI_32330 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D ROI_30670 Acyl-CoA dehydrogenases K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
C 00430 Taurine and hypotaurine metabolism [PATH:rim00430]
D ROI_40930 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D ROI_10470 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:rim00450]
D ROI_19210 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D ROI_24840 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D ROI_10180 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D ROI_03410 Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D ROI_16010 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D ROI_16000 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D ROI_02500 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D ROI_40610 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:rim00460]
D ROI_06530 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_27260 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_32360 exo-1,4-beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_37790 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_00400 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_00440 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_01160 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_01170 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_36380 mannose-6-phosphate isomerase, class I/beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D ROI_26810 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D ROI_13490 aspartate--ammonia ligase, AsnA-type K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D ROI_00800 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:rim00470]
D ROI_22520 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D ROI_26030 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D ROI_25930 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D ROI_19220 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D ROI_00670 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:rim00480]
D ROI_23500 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D ROI_22480 isocitrate dehydrogenase, NADP-dependent, eukaryotic type K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D ROI_13430 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:rim00511]
D ROI_31500 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_37980 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_09850 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_31510 Beta galactosidase small chain. K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_41150 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_09940 Beta-galactosidase/beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D ROI_20300 Alpha-mannosidase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]
D ROI_15350 Beta-galactosidase/beta-glucuronidase K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25]
D ROI_24740 Alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rim00541]
D ROI_04580 Nucleoside-diphosphate-sugar epimerases K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ROI_04940 3-beta hydroxysteroid dehydrogenase/isomerase family. K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ROI_21590 UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ROI_08660 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D ROI_08330 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D ROI_04440 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D ROI_04430 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D ROI_04450 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D ROI_07700 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D ROI_04410 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D ROI_08290 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D ROI_08270 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D ROI_08280 Nucleoside-diphosphate-sugar epimerases K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D ROI_15600 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D ROI_24530 hypothetical protein K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:rim00550]
D ROI_15660 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D ROI_30030 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D ROI_15560 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D ROI_26030 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D ROI_08450 UDP-N-acetylmuramoylalanine--D-glutamate ligase K23169 murD2; UDP-N-acetylmuramoyl-L-alanine---L-glutamate ligase [EC:6.3.2.53]
D ROI_28160 UDP-N-acetylmuramyl-tripeptide synthetases K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D ROI_16740 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D ROI_21380 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D ROI_22570 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D ROI_23300 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D ROI_26040 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D ROI_34870 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D ROI_30290 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D ROI_01390 penicillin-binding protein, 1A family K18770 pbpD; penicillin-binding protein 4 [EC:2.4.99.28 3.4.16.4]
D ROI_26050 Cell division protein FtsI/penicillin-binding protein 2 K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D ROI_26060 Cell division protein FtsI/penicillin-binding protein 2 K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D ROI_24120 Cell division protein FtsI/penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A
D ROI_21800 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D ROI_21850 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D ROI_33400 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D ROI_22990 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:rim00552]
D ROI_22570 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D ROI_23300 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D ROI_08220 bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D ROI_30410 Teichoic acid biosynthesis proteins K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D ROI_08390 cell envelope-related function transcriptional attenuator common domain K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D ROI_34530 cell envelope-related function transcriptional attenuator common domain K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D ROI_04730 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC K18704 tarL; CDP-ribitol ribitolphosphotransferase / teichoic acid ribitol-phosphate polymerase [EC:2.7.8.14 2.7.8.47]
D ROI_16830 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D ROI_07390 LPS biosynthesis protein K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]
D ROI_04750 LPS biosynthesis protein K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:rim00543]
D ROI_09030 Predicted membrane protein involved in D-alanine export K19294 algI; alginate O-acetyltransferase complex protein AlgI
D ROI_38610 Predicted membrane protein involved in D-alanine export K19294 algI; alginate O-acetyltransferase complex protein AlgI
D ROI_38870 Predicted membrane protein involved in D-alanine export K19294 algI; alginate O-acetyltransferase complex protein AlgI
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:rim00730]
D ROI_10280 hydroxymethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D ROI_27090 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D ROI_02260 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ROI_19050 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ROI_10840 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ROI_10850 thiazole biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D ROI_24890 tyrosine lyase ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D ROI_19400 iron-only hydrogenase maturation protein HydG K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D ROI_25080 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D ROI_24900 thiazole-phosphate synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D ROI_13860 Hydroxyethylthiazole kinase, sugar kinase family K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D ROI_24880 Thiamine monophosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D ROI_13870 thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D ROI_28060 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D ROI_28040 thiamine diphosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D ROI_14170 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:rim00740]
D ROI_02380 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D ROI_02360 diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D ROI_02390 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D ROI_21710 riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D ROI_13860 Hydroxyethylthiazole kinase, sugar kinase family K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D ROI_25310 NTP pyrophosphohydrolases including oxidative damage repair enzymes K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:rim00750]
D ROI_13140 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D ROI_22110 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D ROI_06940 pyridoxal phosphate synthase yaaD subunit K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:rim00760]
D ROI_23660 Aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D ROI_23670 quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D ROI_23650 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D ROI_27840 putative nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D ROI_26660 purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D ROI_34500 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D ROI_34400 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D ROI_23240 nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D ROI_12820 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D ROI_35460 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D ROI_33790 NAD-dependent protein deacetylases, SIR2 family K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D ROI_25060 Predicted sugar kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:rim00770]
D ROI_35410 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ROI_13130 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ROI_24400 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D ROI_35420 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D ROI_24390 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D ROI_06880 Dihydroxyacid dehydratase/phosphogluconate dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D ROI_13120 Dihydroxyacid dehydratase/phosphogluconate dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D ROI_32340 ketopantoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D ROI_32330 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D ROI_05580 pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D ROI_07610 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D ROI_23530 pantetheine-phosphate adenylyltransferase, bacterial K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D ROI_10380 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D ROI_00500 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D ROI_32320 L-aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:rim00780]
D ROI_01720 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ROI_13790 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ROI_01740 beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D ROI_40230 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D ROI_40220 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D ROI_40210 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D ROI_19390 iron-only hydrogenase maturation protein HydE K01012 bioB; biotin synthase [EC:2.8.1.6]
C 00785 Lipoic acid metabolism
C 00790 Folate biosynthesis [PATH:rim00790]
D ROI_35390 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D ROI_38600 folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D ROI_02380 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D ROI_02540 molybdenum cofactor biosynthesis protein A, bacterial K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D ROI_02460 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D ROI_02470 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D ROI_33430 Molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:rim00670]
D ROI_35390 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D ROI_22590 Formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D ROI_36400 methenyltetrahydrofolate cyclohydrolase/5,10-methylenetetrahydrofolate dehydrogenase (NADP+) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D ROI_36410 Formimidoyltetrahydrofolate cyclodeaminase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9]
D ROI_00800 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D ROI_35970 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D ROI_10450 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D ROI_07330 Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D ROI_28130 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D ROI_10180 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D ROI_22860 Predicted alternative thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D ROI_27200 5,10-methylenetetrahydrofolate reductase, prokaryotic form K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D ROI_24220 5,10-methenyltetrahydrofolate synthetase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:rim00860]
D ROI_01430 siroheme synthase, N-terminal domain K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D ROI_19950 precorrin-3 methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D ROI_19930 precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D ROI_19940 Cobalamin biosynthesis protein CbiG K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D ROI_19920 cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D ROI_19960 precorrin-6x reductase K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D ROI_19970 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)/cobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D ROI_24710 adenosylcobyric acid synthase (glutamine-hydrolysing) K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D ROI_24640 adenosylcobinamide-phosphate synthase K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D ROI_24680 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D ROI_24660 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D ROI_24670 Cobalamin-5-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D ROI_24690 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D ROI_24650 Fructose-2,6-bisphosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D ROI_20630 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81]
D ROI_10030 Beta-galactosidase/beta-glucuronidase K01195 uidA; beta-glucuronidase [EC:3.2.1.31]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:rim00900]
D ROI_25080 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D ROI_21400 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D ROI_17330 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D ROI_08510 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D ROI_10200 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D ROI_21950 (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D ROI_30650 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ROI_25090 Geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D ROI_21380 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation [PATH:rim00903]
D ROI_00870 Esterase/lipase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D ROI_39030 Transketolase, N-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D ROI_39040 Transketolase, C-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D ROI_41370 Transketolase, N-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D ROI_41380 Transketolase, C-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:rim00523]
D ROI_04440 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D ROI_04430 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D ROI_04450 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D ROI_07700 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D ROI_04410 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D ROI_04430 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:rim00946]
D ROI_06530 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_27260 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_32360 exo-1,4-beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_37790 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_00400 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_00440 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_01160 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_01170 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_36380 mannose-6-phosphate isomerase, class I/beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D ROI_09910 Bacterial alpha-L-rhamnosidase. K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D ROI_07010 Penicillin V acylase and related amidases K24041 yxeI; penicillin V amidase [EC:3.5.1.11]
D ROI_05990 Penicillin V acylase and related amidases K24041 yxeI; penicillin V amidase [EC:3.5.1.11]
C 00332 Carbapenem biosynthesis
D ROI_24210 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:rim00261]
D ROI_16010 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D ROI_16000 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D ROI_04100 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D ROI_24570 aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D ROI_13380 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D ROI_13390 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:rim00521]
D ROI_01400 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D ROI_01310 Transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
D ROI_36270 alpha-phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D ROI_37690 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D ROI_04440 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D ROI_04430 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D ROI_04450 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D ROI_07700 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D ROI_04410 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D ROI_01400 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D ROI_01310 Transcriptional regulator/sugar kinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:rim00525]
D ROI_04440 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D ROI_04430 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:rim00401]
D ROI_22370 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D ROI_38040 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D ROI_38050 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D ROI_26890 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D ROI_01710 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D ROI_01720 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ROI_13790 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D ROI_01690 acyl carrier protein K02078 acpP; acyl carrier protein
D ROI_10520 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:rim00999]
D ROI_15700 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D ROI_06530 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_27260 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_32360 exo-1,4-beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_37790 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_00400 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_00440 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_01160 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_01170 Beta-glucosidase-related glycosidases K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ROI_36380 mannose-6-phosphate isomerase, class I/beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:rim00362]
D ROI_31810 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D ROI_21890 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D ROI_21880 Biotin carboxyl carrier protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D ROI_21870 sodium pump decarboxylases, gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
D ROI_30660 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D ROI_30650 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
D ROI_41120 Acylphosphatases K01512 acyP; acylphosphatase [EC:3.6.1.7]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
D ROI_40260 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D ROI_40270 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation [PATH:rim00791]
D ROI_33670 allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54]
D ROI_33660 urea carboxylase K01941 uca; urea carboxylase [EC:6.3.4.6]
C 00930 Caprolactam degradation
D ROI_00870 Esterase/lipase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:rim03020]
D ROI_13660 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D ROI_13670 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D ROI_23580 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
D ROI_38810 DEAD_2. K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:rim03010]
D ROI_00610 Ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D ROI_21270 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D ROI_14010 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D ROI_14240 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D ROI_14120 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D ROI_33820 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6
D ROI_14090 Ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D ROI_13940 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D ROI_14230 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11
D ROI_13680 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D ROI_14220 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D ROI_14080 Ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D ROI_21730 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D ROI_10610 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16
D ROI_33840 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18
D ROI_13990 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D ROI_26560 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21
D ROI_07580 ribosomal protein L1, bacterial/chloroplast K02863 RP-L1; large subunit ribosomal protein L1
D ROI_13980 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2
D ROI_13950 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D ROI_13960 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4
D ROI_07600 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12
D ROI_33970 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9
D ROI_07570 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D ROI_16390 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D ROI_14050 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D ROI_14140 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D ROI_14020 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16
D ROI_14260 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17
D ROI_14110 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D ROI_10680 ribosomal protein L19, bacterial type K02884 RP-L19; large subunit ribosomal protein L19
D ROI_21560 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D ROI_23290 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21
D ROI_14000 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D ROI_13970 Ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D ROI_14060 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D ROI_23270 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27
D ROI_23850 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28
D ROI_14030 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D ROI_14130 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D ROI_17710 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D ROI_10490 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D ROI_07540 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33
D ROI_32490 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D ROI_21550 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D ROI_R_41950 16S; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ROI_R_41940 23S; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:rim00970]
D ROI_T_41880 ROI_T_41880 K14219 tRNA-Arg; tRNA Arg
D ROI_T_41530 ROI_T_41530 K14219 tRNA-Arg; tRNA Arg
D ROI_T_41720 ROI_T_41720 K14219 tRNA-Arg; tRNA Arg
D ROI_T_41700 ROI_T_41700 K14219 tRNA-Arg; tRNA Arg
D ROI_T_41770 ROI_T_41770 K14220 tRNA-Asn; tRNA Asn
D ROI_T_41430 ROI_T_41430 K14221 tRNA-Asp; tRNA Asp
D ROI_T_41790 ROI_T_41790 K14222 tRNA-Cys; tRNA Cys
D ROI_T_41800 ROI_T_41800 K14222 tRNA-Cys; tRNA Cys
D ROI_T_41690 ROI_T_41690 K14223 tRNA-Gln; tRNA Gln
D ROI_T_41550 ROI_T_41550 K14223 tRNA-Gln; tRNA Gln
D ROI_T_41660 ROI_T_41660 K14224 tRNA-Glu; tRNA Glu
D ROI_T_41680 ROI_T_41680 K14224 tRNA-Glu; tRNA Glu
D ROI_T_41670 ROI_T_41670 K14224 tRNA-Glu; tRNA Glu
D ROI_T_41780 ROI_T_41780 K14224 tRNA-Glu; tRNA Glu
D ROI_T_41520 ROI_T_41520 K14225 tRNA-Gly; tRNA Gly
D ROI_T_41930 ROI_T_41930 K14225 tRNA-Gly; tRNA Gly
D ROI_T_41820 ROI_T_41820 K14225 tRNA-Gly; tRNA Gly
D ROI_T_41830 ROI_T_41830 K14225 tRNA-Gly; tRNA Gly
D ROI_T_41840 ROI_T_41840 K14225 tRNA-Gly; tRNA Gly
D ROI_T_41910 ROI_T_41910 K14225 tRNA-Gly; tRNA Gly
D ROI_T_41540 ROI_T_41540 K14226 tRNA-His; tRNA His
D ROI_T_41760 ROI_T_41760 K14228 tRNA-Leu; tRNA Leu
D ROI_T_41630 ROI_T_41630 K14228 tRNA-Leu; tRNA Leu
D ROI_T_41570 ROI_T_41570 K14228 tRNA-Leu; tRNA Leu
D ROI_T_41860 ROI_T_41860 K14228 tRNA-Leu; tRNA Leu
D ROI_T_41870 ROI_T_41870 K14228 tRNA-Leu; tRNA Leu
D ROI_T_41710 ROI_T_41710 K14229 tRNA-Lys; tRNA Lys
D ROI_T_41730 ROI_T_41730 K14229 tRNA-Lys; tRNA Lys
D ROI_T_41560 ROI_T_41560 K14229 tRNA-Lys; tRNA Lys
D ROI_T_41490 ROI_T_41490 K14229 tRNA-Lys; tRNA Lys
D ROI_T_41590 ROI_T_41590 K14230 tRNA-Met; tRNA Met
D ROI_T_41500 ROI_T_41500 K14230 tRNA-Met; tRNA Met
D ROI_T_41740 ROI_T_41740 K14230 tRNA-Met; tRNA Met
D ROI_T_41470 ROI_T_41470 K14230 tRNA-Met; tRNA Met
D ROI_T_41480 ROI_T_41480 K14231 tRNA-Phe; tRNA Phe
D ROI_T_41920 ROI_T_41920 K14231 tRNA-Phe; tRNA Phe
D ROI_T_41810 ROI_T_41810 K14232 tRNA-Pro; tRNA Pro
D ROI_T_41510 ROI_T_41510 K14232 tRNA-Pro; tRNA Pro
D ROI_T_41610 ROI_T_41610 K14232 tRNA-Pro; tRNA Pro
D ROI_T_41850 ROI_T_41850 K14233 tRNA-Ser; tRNA Ser
D ROI_T_41900 ROI_T_41900 K14233 tRNA-Ser; tRNA Ser
D ROI_T_41640 ROI_T_41640 K14233 tRNA-Ser; tRNA Ser
D ROI_T_41650 ROI_T_41650 K14233 tRNA-Ser; tRNA Ser
D ROI_T_41450 ROI_T_41450 K14234 tRNA-Thr; tRNA Thr
D ROI_T_41890 ROI_T_41890 K14234 tRNA-Thr; tRNA Thr
D ROI_T_41600 ROI_T_41600 K14234 tRNA-Thr; tRNA Thr
D ROI_T_41750 ROI_T_41750 K14235 tRNA-Trp; tRNA Trp
D ROI_T_41460 ROI_T_41460 K14236 tRNA-Tyr; tRNA Tyr
D ROI_T_41620 ROI_T_41620 K14236 tRNA-Tyr; tRNA Tyr
D ROI_T_41440 ROI_T_41440 K14237 tRNA-Val; tRNA Val
D ROI_T_41580 ROI_T_41580 K14237 tRNA-Val; tRNA Val
D ROI_20740 glutamyl-tRNA synthetase, bacterial family K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D ROI_28520 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D ROI_28510 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D ROI_17780 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D ROI_17110 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D ROI_09900 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D ROI_28550 aspartyl-tRNA synthetase, archaeal type K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D ROI_00710 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D ROI_13230 glycyl-tRNA synthetase, dimeric type K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D ROI_34470 threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D ROI_35710 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D ROI_10240 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D ROI_40610 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D ROI_07330 Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D ROI_28130 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D ROI_29200 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D ROI_24380 leucyl-tRNA synthetase, eubacterial and mitochondrial family K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D ROI_00550 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D ROI_05620 Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D ROI_25590 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D ROI_19810 prolyl-tRNA synthetase, family II K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D ROI_15750 prolyl-tRNA synthetase, family I K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D ROI_09890 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D ROI_22260 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D ROI_22270 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D ROI_40090 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D ROI_11090 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:rim03060]
D ROI_14150 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D ROI_07550 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE
D ROI_00780 protein translocase subunit secF/protein translocase subunit secD K12257 secDF; SecD/SecF fusion protein
D ROI_13020 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D ROI_04150 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D ROI_10590 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D ROI_41990 Bacterial signal recognition particle RNA K01983 ffs; SRP RNA
D ROI_10550 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D ROI_02300 signal peptidase I . Serine peptidase. MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89]
D ROI_11120 signal peptidase I, bacterial type K03100 lepB; signal peptidase I [EC:3.4.21.89]
D ROI_23090 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D ROI_25690 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:rim04122]
D ROI_02260 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ROI_19050 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ROI_10840 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ROI_10170 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D ROI_02540 molybdenum cofactor biosynthesis protein A, bacterial K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D ROI_02460 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D ROI_02470 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D ROI_10850 thiazole biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D ROI_01640 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
D ROI_24910 sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein
D ROI_01660 Predicted metal-dependent protease of the PAD1/JAB1 superfamily K21140 mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]
C 03050 Proteasome
C 03018 RNA degradation [PATH:rim03018]
D ROI_15370 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ROI_38650 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ROI_21750 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D ROI_38680 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D ROI_40780 Superfamily II DNA and RNA helicases K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D ROI_17700 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D ROI_10910 conserved hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D ROI_37250 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D ROI_13290 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D ROI_20620 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ROI_40340 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D ROI_21490 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:rim03030]
D ROI_16210 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ROI_41090 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ROI_37070 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D ROI_21430 exonuclease, DNA polymerase III, epsilon subunit family K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D ROI_21440 DNA polymerase III, alpha subunit (gram-positive type) K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D ROI_40980 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D ROI_33470 DNA polymerase III, gamma/tau subunits K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D ROI_18010 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D ROI_32470 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ROI_33980 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D ROI_28280 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D ROI_33830 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D ROI_10370 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D ROI_25180 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:rim03410]
D ROI_22670 Predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D ROI_10140 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D ROI_08650 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D ROI_24830 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D ROI_13410 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D ROI_10370 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D ROI_36130 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D ROI_25180 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:rim03420]
D ROI_15620 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D ROI_27770 Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
D ROI_04170 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D ROI_32130 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ROI_38090 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ROI_17580 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ROI_20750 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ROI_10370 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D ROI_25180 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D ROI_38810 DEAD_2. K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03430 Mismatch repair [PATH:rim03430]
D ROI_22840 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D ROI_14330 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D ROI_22870 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D ROI_32130 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ROI_38090 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ROI_17580 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ROI_20750 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ROI_25110 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D ROI_25100 Exonuclease VII small subunit. K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D ROI_36130 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D ROI_33830 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D ROI_37070 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D ROI_21430 exonuclease, DNA polymerase III, epsilon subunit family K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D ROI_21440 DNA polymerase III, alpha subunit (gram-positive type) K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D ROI_32470 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ROI_40980 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D ROI_18010 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D ROI_33470 DNA polymerase III, gamma/tau subunits K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D ROI_16210 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ROI_41090 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ROI_25180 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:rim03440]
D ROI_36130 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D ROI_33830 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D ROI_32450 recF protein K03629 recF; DNA replication and repair protein RecF
D ROI_13210 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D ROI_41360 Recombinational DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR
D ROI_25380 protein RecA K03553 recA; recombination protein RecA
D ROI_10370 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D ROI_24170 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D ROI_24160 Holliday junction DNA helicase, RuvB subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D ROI_32140 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D ROI_17770 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D ROI_23820 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D ROI_04280 helicase, putative, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D ROI_37070 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D ROI_21430 exonuclease, DNA polymerase III, epsilon subunit family K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D ROI_21440 DNA polymerase III, alpha subunit (gram-positive type) K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D ROI_32470 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ROI_40980 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D ROI_18010 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D ROI_33470 DNA polymerase III, gamma/tau subunits K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D ROI_16210 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ROI_41090 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:rim02010]
D ROI_15940 sulfate/thiosulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D ROI_15950 sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D ROI_15960 sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D ROI_15970 sulfate ABC transporter, ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D ROI_02570 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D ROI_02580 molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D ROI_02590 ABC-type sulfate/molybdate transport systems, ATPase component K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D ROI_06290 ABC-type Fe3+ transport system, periplasmic component K02012 afuA; iron(III) transport system substrate-binding protein
D ROI_06310 ABC-type Fe3+ transport system, permease component K02011 afuB; iron(III) transport system permease protein
D ROI_06300 ABC-type spermidine/putrescine transport systems, ATPase components K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D ROI_24980 Spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D ROI_24970 ABC-type spermidine/putrescine transport system, permease component II K11070 potC; spermidine/putrescine transport system permease protein
D ROI_24960 ABC-type spermidine/putrescine transport system, permease component I K11071 potB; spermidine/putrescine transport system permease protein
D ROI_24950 spermidine/putrescine ABC transporter ATP-binding subunit K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D ROI_11300 carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-) K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D ROI_37920 Maltose-binding periplasmic proteins/domains K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D ROI_17950 hypothetical protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D ROI_20720 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D ROI_37930 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D ROI_37940 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D ROI_03520 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D ROI_36300 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D ROI_36310 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D ROI_36320 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D ROI_24310 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K10188 lacE; lactose/L-arabinose transport system substrate-binding protein
D ROI_24300 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K10189 lacF; lactose/L-arabinose transport system permease protein
D ROI_38310 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K10190 lacG; lactose/L-arabinose transport system permease protein
D ROI_32890 hypothetical protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D ROI_24780 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K17318 lplA; putative aldouronate transport system substrate-binding protein
D ROI_06470 ABC-type sugar transport system, periplasmic component K17318 lplA; putative aldouronate transport system substrate-binding protein
D ROI_23970 ABC-type sugar transport system, periplasmic component K17318 lplA; putative aldouronate transport system substrate-binding protein
D ROI_24720 ABC-type sugar transport system, periplasmic component K17318 lplA; putative aldouronate transport system substrate-binding protein
D ROI_37820 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K17318 lplA; putative aldouronate transport system substrate-binding protein
D ROI_10000 ABC-type sugar transport system, periplasmic component K17318 lplA; putative aldouronate transport system substrate-binding protein
D ROI_32870 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K17319 lplB; putative aldouronate transport system permease protein
D ROI_24800 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K17319 lplB; putative aldouronate transport system permease protein
D ROI_06480 ABC-type polysaccharide transport system, permease component K17319 lplB; putative aldouronate transport system permease protein
D ROI_23950 ABC-type polysaccharide transport system, permease component K17319 lplB; putative aldouronate transport system permease protein
D ROI_37830 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K17319 lplB; putative aldouronate transport system permease protein
D ROI_32880 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K17320 lplC; putative aldouronate transport system permease protein
D ROI_24790 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K17320 lplC; putative aldouronate transport system permease protein
D ROI_37840 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K17320 lplC; putative aldouronate transport system permease protein
D ROI_06490 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K17320 lplC; putative aldouronate transport system permease protein
D ROI_23940 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K17320 lplC; putative aldouronate transport system permease protein
D ROI_29150 hypothetical protein K10240 cebE; cellobiose transport system substrate-binding protein
D ROI_20430 hypothetical protein K10240 cebE; cellobiose transport system substrate-binding protein
D ROI_29160 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K10241 cebF; cellobiose transport system permease protein
D ROI_20440 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K10241 cebF; cellobiose transport system permease protein
D ROI_29170 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K10242 cebG; cellobiose transport system permease protein
D ROI_20450 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K10242 cebG; cellobiose transport system permease protein
D ROI_16870 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K17234 araN; arabinooligosaccharide transport system substrate-binding protein
D ROI_16880 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K17235 araP; arabinooligosaccharide transport system permease protein
D ROI_16890 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K17236 araQ; arabinooligosaccharide transport system permease protein
D ROI_10980 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins
D ROI_11000 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein
D ROI_11010 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein
D ROI_11790 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K23508 ytfQ; galactofuranose transport system substrate-binding protein
D ROI_11830 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K23508 ytfQ; galactofuranose transport system substrate-binding protein
D ROI_11820 monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-) K23509 ytfT; galactofuranose transport system permease protein
D ROI_11810 monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-) K23509 ytfT; galactofuranose transport system permease protein
D ROI_11800 monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D ROI_36070 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K10540 mglB; methyl-galactoside transport system substrate-binding protein
D ROI_36000 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K10540 mglB; methyl-galactoside transport system substrate-binding protein
D ROI_36020 monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-) K10541 mglC; methyl-galactoside transport system permease protein
D ROI_36010 monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D ROI_40350 phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1) K02040 pstS; phosphate transport system substrate-binding protein
D ROI_40360 phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1) K02037 pstC; phosphate transport system permease protein
D ROI_40370 phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1) K02038 pstA; phosphate transport system permease protein
D ROI_40380 phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D ROI_34420 phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D ROI_34440 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D ROI_34450 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D ROI_34430 phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D ROI_01220 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain K02424 tcyA; L-cystine transport system substrate-binding protein
D ROI_01210 amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-) K10009 tcyB; L-cystine transport system permease protein
D ROI_01200 ABC-type polar amino acid transport system, ATPase component K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D ROI_10780 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K17077 artQ; arginine/lysine/histidine transport system permease protein
D ROI_10800 amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D ROI_07850 amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D ROI_07860 amino acid/amide ABC transporter membrane protein 1, HAAT family (TC 3.A.1.4.-) K01997 livH; branched-chain amino acid transport system permease protein
D ROI_07870 amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-) K01998 livM; branched-chain amino acid transport system permease protein
D ROI_07880 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family (TC 3.A.1.4.-) K01995 livG; branched-chain amino acid transport system ATP-binding protein
D ROI_07890 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-) K01996 livF; branched-chain amino acid transport system ATP-binding protein
D ROI_03930 ABC-type metal ion transport system, periplasmic component/surface antigen K02073 metQ; D-methionine transport system substrate-binding protein
D ROI_03920 ABC-type metal ion transport system, permease component K02072 metI; D-methionine transport system permease protein
D ROI_03910 ABC-type metal ion transport system, ATPase component K02071 metN; D-methionine transport system ATP-binding protein
D ROI_06670 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D ROI_06690 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K15582 oppC; oligopeptide transport system permease protein
D ROI_06700 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain K15583 oppD; oligopeptide transport system ATP-binding protein
D ROI_06710 ATPase components of various ABC-type transport systems, contain duplicated ATPase K10823 oppF; oligopeptide transport system ATP-binding protein
D ROI_07710 ABC-type Co2+ transport system, permease component K02007 cbiM; cobalt/nickel transport system permease protein
D ROI_07730 ABC-type cobalt transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D ROI_40190 Uncharacterized conserved protein K03523 bioY; biotin transport system substrate-specific component
D ROI_26800 Uncharacterized conserved protein K03523 bioY; biotin transport system substrate-specific component
D ROI_16330 ABC-type cobalt transport system, permease component CbiQ and related transporters K16785 ecfT; energy-coupling factor transport system permease protein
D ROI_16300 ABC-type cobalt transport system, ATPase component K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D ROI_16320 ABC-type cobalt transport system, ATPase component K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D ROI_04770 ABC-type polysaccharide/polyol phosphate export systems, permease component K09690 wzm; homopolymeric O-antigen transport system permease protein
D ROI_04980 ABC-type polysaccharide/polyol phosphate export systems, permease component K09690 wzm; homopolymeric O-antigen transport system permease protein
D ROI_04990 ABC-type polysaccharide/polyol phosphate transport system, ATPase component K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D ROI_04780 ABC-type polysaccharide/polyol phosphate transport system, ATPase component K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D ROI_04460 ABC-type polysaccharide/polyol phosphate export systems, permease component K09692 tagG; teichoic acid transport system permease protein
D ROI_04470 ABC-type polysaccharide/polyol phosphate transport system, ATPase component K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]
D ROI_08700 ABC-2 type transporter. K09696 natB; sodium transport system permease protein
D ROI_08690 ABC-type multidrug transport system, ATPase component K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D ROI_39480 Uncharacterized protein conserved in bacteria K20460 nukE; lantibiotic transport system permease protein
D ROI_39490 Uncharacterized protein conserved in bacteria K20461 nukG; lantibiotic transport system permease protein
D ROI_39470 ABC-type multidrug transport system, ATPase component K20459 nukF; lantibiotic transport system ATP-binding protein
D ROI_06040 hypothetical protein K20491 nisE; lantibiotic transport system permease protein
D ROI_06050 hypothetical protein K20492 nisG; lantibiotic transport system permease protein
D ROI_06030 ABC-type multidrug transport system, ATPase component K20490 nisF; lantibiotic transport system ATP-binding protein
D ROI_34950 Predicted permease. K19084 braE; bacitracin transport system permease protein
D ROI_34940 ABC-type antimicrobial peptide transport system, ATPase component K19083 braD; bacitracin transport system ATP-binding protein
D ROI_30450 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D ROI_30440 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D ROI_11210 hypothetical protein K16919 ytrC_D; acetoin utilization transport system permease protein
D ROI_11200 ABC-type multidrug transport system, ATPase component K16921 ytrB; acetoin utilization transport system ATP-binding protein
D ROI_28980 ABC-type multidrug transport system, ATPase and permease components K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_19620 ABC-type multidrug transport system, ATPase and permease components K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_27300 ABC-type multidrug transport system, ATPase and permease components K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_19640 ABC-type multidrug transport system, ATPase and permease components K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_28990 ABC-type multidrug transport system, ATPase and permease components K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_27290 ABC-type multidrug transport system, ATPase and permease components K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_25240 ABC-type multidrug transport system, ATPase and permease components K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_28480 ABC-type multidrug transport system, ATPase and permease components K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_06420 ABC-type multidrug transport system, ATPase and permease components K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_38450 ABC-type multidrug transport system, ATPase and permease components K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_38460 ABC-type multidrug transport system, ATPase and permease components K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_28490 ABC-type multidrug transport system, ATPase and permease components K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_06430 ABC-type multidrug transport system, ATPase and permease components K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_25230 ABC-type multidrug transport system, ATPase and permease components K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
C 02060 Phosphotransferase system (PTS) [PATH:rim02060]
D ROI_34340 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D ROI_19120 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D ROI_04400 Phosphotransferase System HPr (HPr) Family K02784 ptsH; phosphocarrier protein HPr
D ROI_15500 Phosphotransferase System HPr (HPr) Family K02784 ptsH; phosphocarrier protein HPr
D ROI_19130 Phosphotransferase System HPr (HPr) Family K02784 ptsH; phosphocarrier protein HPr
D ROI_34330 Phosphotransferase System HPr (HPr) Family K02784 ptsH; phosphocarrier protein HPr
D ROI_19160 PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2) K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D ROI_34320 PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4) K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D ROI_34310 fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:rim03070]
D ROI_00780 protein translocase subunit secF/protein translocase subunit secD K12257 secDF; SecD/SecF fusion protein
D ROI_07550 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE
D ROI_14150 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D ROI_13020 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D ROI_04150 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D ROI_10550 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D ROI_10590 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D ROI_29570 Type IV secretory pathway, VirD4 components K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D ROI_14850 Type IV secretory pathway, VirD4 components K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D ROI_31200 Type IV secretory pathway, VirD4 components K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:rim02020]
D ROI_40420 Signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D ROI_40410 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D ROI_12240 Signal transduction histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D ROI_40350 phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1) K02040 pstS; phosphate transport system substrate-binding protein
D ROI_08430 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107]
D ROI_07180 Flagellin and related hook-associated proteins K02406 fliC; flagellin
D ROI_34680 Flagellin and related hook-associated proteins K02406 fliC; flagellin
D ROI_41040 Flagellin and related hook-associated proteins K02406 fliC; flagellin
D ROI_07450 Flagellin and related hook-associated proteins K02406 fliC; flagellin
D ROI_21230 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D ROI_03450 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain. K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D ROI_10070 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07775 resD; two-component system, OmpR family, response regulator ResD
D ROI_22160 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07775 resD; two-component system, OmpR family, response regulator ResD
D ROI_32480 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D ROI_34950 Predicted permease. K19084 braE; bacitracin transport system permease protein
D ROI_34940 ABC-type antimicrobial peptide transport system, ATPase component K19083 braD; bacitracin transport system ATP-binding protein
D ROI_34920 hypothetical protein K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D ROI_11640 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3]
D ROI_10080 Signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D ROI_14520 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./HAMP domain. K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D ROI_06070 Signal transduction histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D ROI_14960 Signal transduction histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D ROI_06060 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D ROI_14500 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D ROI_06030 ABC-type multidrug transport system, ATPase component K20490 nisF; lantibiotic transport system ATP-binding protein
D ROI_06040 hypothetical protein K20491 nisE; lantibiotic transport system permease protein
D ROI_06050 hypothetical protein K20492 nisG; lantibiotic transport system permease protein
D ROI_25010 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D ROI_11900 Malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D ROI_08690 ABC-type multidrug transport system, ATPase component K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D ROI_08700 ABC-2 type transporter. K09696 natB; sodium transport system permease protein
D ROI_00180 Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide K07813 agrB; accessory gene regulator B
D ROI_18170 Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide K07813 agrB; accessory gene regulator B
D ROI_31590 Accessory gene regulator B. K07813 agrB; accessory gene regulator B
D ROI_31620 Accessory gene regulator B. K07813 agrB; accessory gene regulator B
D ROI_02920 Accessory gene regulator B. K07813 agrB; accessory gene regulator B
D ROI_03230 Accessory gene regulator B. K07813 agrB; accessory gene regulator B
D ROI_07130 carbon storage regulator (csrA) K03563 csrA; carbon storage regulator
D ROI_41030 Global regulator protein family. K03563 csrA; carbon storage regulator
D ROI_32570 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase. K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D ROI_28780 Signal transduction histidine kinase K14988 salK; two-component system, NarL family, secretion system sensor histidine kinase SalK
D ROI_34740 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D ROI_12720 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D ROI_39530 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D ROI_34750 hypothetical protein K12510 tadB; tight adherence protein B
D ROI_34760 Bacterial type II secretion system protein F domain. K12511 tadC; tight adherence protein C
D ROI_30110 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D ROI_30090 Uncharacterized protein related to glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ROI_12950 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ROI_30650 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ROI_21980 Methylase of chemotaxis methyl-accepting proteins K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D ROI_36140 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_38490 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_40700 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_35600 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_39830 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_16470 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_26300 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_06730 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_06790 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_26590 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_07740 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_21530 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_22090 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_32730 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_13500 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_03760 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_13820 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_33780 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_33850 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_21190 Chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D ROI_21520 Chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D ROI_21180 Chemotaxis protein histidine kinase and related kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D ROI_22130 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ROI_21070 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ROI_21170 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D ROI_10100 Chemotaxis signal transduction protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D ROI_06510 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase. K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D ROI_24730 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain. K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D ROI_11780 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain. K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D ROI_37800 Predicted signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D ROI_20230 Predicted signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D ROI_36050 Predicted signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D ROI_06520 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D ROI_11770 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D ROI_27280 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D ROI_37810 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D ROI_20240 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D ROI_36040 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D ROI_08810 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D ROI_19760 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D ROI_13760 Pectin methylesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D ROI_07070 Anti-sigma-28 factor, FlgM. K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:rim02024]
D ROI_10760 LuxS protein involved in autoinducer AI2 synthesis K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D ROI_26890 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D ROI_34900 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D ROI_25280 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D ROI_07850 amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D ROI_07860 amino acid/amide ABC transporter membrane protein 1, HAAT family (TC 3.A.1.4.-) K01997 livH; branched-chain amino acid transport system permease protein
D ROI_07870 amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-) K01998 livM; branched-chain amino acid transport system permease protein
D ROI_07880 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family (TC 3.A.1.4.-) K01995 livG; branched-chain amino acid transport system ATP-binding protein
D ROI_07890 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-) K01996 livF; branched-chain amino acid transport system ATP-binding protein
D ROI_01180 Beta-mannanase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D ROI_02360 diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D ROI_00180 Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide K07813 agrB; accessory gene regulator B
D ROI_18170 Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide K07813 agrB; accessory gene regulator B
D ROI_31590 Accessory gene regulator B. K07813 agrB; accessory gene regulator B
D ROI_31620 Accessory gene regulator B. K07813 agrB; accessory gene regulator B
D ROI_02920 Accessory gene regulator B. K07813 agrB; accessory gene regulator B
D ROI_03230 Accessory gene regulator B. K07813 agrB; accessory gene regulator B
D ROI_11640 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3]
D ROI_06670 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D ROI_06690 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K15582 oppC; oligopeptide transport system permease protein
D ROI_06700 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain K15583 oppD; oligopeptide transport system ATP-binding protein
D ROI_06710 ATPase components of various ABC-type transport systems, contain duplicated ATPase K10823 oppF; oligopeptide transport system ATP-binding protein
D ROI_07780 Bacterial extracellular solute-binding proteins, family 5 Middle. K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ROI_17820 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ROI_07790 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02033 ABC.PE.P; peptide/nickel transport system permease protein
D ROI_17850 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02033 ABC.PE.P; peptide/nickel transport system permease protein
D ROI_07800 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D ROI_17860 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D ROI_07810 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain K02031 ddpD; peptide/nickel transport system ATP-binding protein
D ROI_17830 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component K02031 ddpD; peptide/nickel transport system ATP-binding protein
D ROI_17840 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain K02032 ddpF; peptide/nickel transport system ATP-binding protein
D ROI_00780 protein translocase subunit secF/protein translocase subunit secD K12257 secDF; SecD/SecF fusion protein
D ROI_07550 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE
D ROI_14150 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D ROI_13020 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D ROI_04150 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D ROI_10550 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D ROI_10590 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D ROI_25010 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D ROI_03460 Tetratricopeptide repeat./Helix-turn-helix. K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D ROI_14520 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./HAMP domain. K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D ROI_06070 Signal transduction histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D ROI_14960 Signal transduction histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D ROI_06060 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D ROI_14500 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D ROI_06030 ABC-type multidrug transport system, ATPase component K20490 nisF; lantibiotic transport system ATP-binding protein
D ROI_06040 hypothetical protein K20491 nisE; lantibiotic transport system permease protein
D ROI_06050 hypothetical protein K20492 nisG; lantibiotic transport system permease protein
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:rim02030]
D ROI_36140 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_38490 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_40700 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_35600 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_39830 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_16470 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_26300 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_06730 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_06790 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_26590 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_07740 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_21530 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_22090 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_32730 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_13500 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_03760 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_13820 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_33780 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_33850 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_36070 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K10540 mglB; methyl-galactoside transport system substrate-binding protein
D ROI_36000 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K10540 mglB; methyl-galactoside transport system substrate-binding protein
D ROI_21180 Chemotaxis protein histidine kinase and related kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D ROI_21190 Chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D ROI_21520 Chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D ROI_22130 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ROI_21070 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ROI_21200 Chemotaxis protein CheC, inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC
D ROI_21170 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D ROI_10100 Chemotaxis signal transduction protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D ROI_21210 Chemotaxis protein; stimulates methylation of MCP proteins K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D ROI_21980 Methylase of chemotaxis methyl-accepting proteins K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D ROI_20900 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D ROI_21050 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D ROI_21060 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
C 02040 Flagellar assembly [PATH:rim02040]
D ROI_20880 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D ROI_20890 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) K02409 fliF; flagellar M-ring protein FliF
D ROI_20900 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D ROI_20920 Flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH
D ROI_20930 type III secretion system ATPase, FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D ROI_20940 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D ROI_20960 Flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D ROI_21050 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D ROI_21060 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D ROI_21080 Flagellar biosynthesis protein, FliO. K02418 fliO; flagellar protein FliO/FliZ
D ROI_21090 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D ROI_21100 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D ROI_21110 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D ROI_21130 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D ROI_20860 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D ROI_20870 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D ROI_20970 Flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D ROI_21000 fagellar hook-basal body proteins K02390 flgE; flagellar hook protein FlgE
D ROI_04250 fagellar hook-basal body proteins K02391 flgF; flagellar basal-body rod protein FlgF
D ROI_04260 fagellar hook-basal body proteins K02392 flgG; flagellar basal-body rod protein FlgG
D ROI_04270 hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D ROI_07090 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D ROI_07100 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D ROI_07110 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D ROI_07180 Flagellin and related hook-associated proteins K02406 fliC; flagellin
D ROI_34680 Flagellin and related hook-associated proteins K02406 fliC; flagellin
D ROI_41040 Flagellin and related hook-associated proteins K02406 fliC; flagellin
D ROI_07450 Flagellin and related hook-associated proteins K02406 fliC; flagellin
D ROI_07150 Flagellar capping protein K02407 fliD; flagellar hook-associated protein 2
D ROI_07530 hypothetical protein K02407 fliD; flagellar hook-associated protein 2
D ROI_07160 flagellar biosynthetic protein FliS K02422 fliS; flagellar secretion chaperone FliS
D ROI_07070 Anti-sigma-28 factor, FlgM. K02398 flgM; negative regulator of flagellin synthesis FlgM
D ROI_01220 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain K02424 tcyA; L-cystine transport system substrate-binding protein
D ROI_28270 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor
D ROI_21230 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D ROI_15370 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ROI_38650 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D ROI_10180 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:rim01501]
D ROI_35740 Beta-glucosidase-related glycosidases K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D ROI_06670 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D ROI_06690 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K15582 oppC; oligopeptide transport system permease protein
D ROI_06700 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain K15583 oppD; oligopeptide transport system ATP-binding protein
D ROI_06710 ATPase components of various ABC-type transport systems, contain duplicated ATPase K10823 oppF; oligopeptide transport system ATP-binding protein
D ROI_08310 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component K02172 blaR1; bla regulator protein blaR1
D ROI_08300 Predicted transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D ROI_30290 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
C 01502 Vancomycin resistance [PATH:rim01502]
D ROI_10080 Signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D ROI_22520 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D ROI_16740 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D ROI_26040 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D ROI_34870 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rim01503]
D ROI_34610 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D ROI_07670 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D ROI_29960 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D ROI_08430 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:rim01000]
C 01001 Protein kinases [BR:rim01001]
D ROI_28070 Serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D ROI_34650 Protein kinase domain. K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D ROI_16360 Protein kinase domain. K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D ROI_40420 Signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D ROI_12240 Signal transduction histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D ROI_03450 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain. K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D ROI_34920 hypothetical protein K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D ROI_11640 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3]
D ROI_10080 Signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D ROI_14520 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./HAMP domain. K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D ROI_06070 Signal transduction histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D ROI_14960 Signal transduction histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D ROI_32570 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase. K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D ROI_28780 Signal transduction histidine kinase K14988 salK; two-component system, NarL family, secretion system sensor histidine kinase SalK
D ROI_21180 Chemotaxis protein histidine kinase and related kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D ROI_06510 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase. K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D ROI_24730 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain. K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D ROI_11780 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain. K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D ROI_37800 Predicted signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D ROI_20230 Predicted signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D ROI_36050 Predicted signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:rim01009]
D ROI_37250 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D ROI_19430 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG
D ROI_28090 hypothetical protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D ROI_18260 Serine/threonine protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:rim01002]
D ROI_23090 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D ROI_34810 Type IV leader peptidase family. K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D ROI_34720 Type IV leader peptidase family. K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D ROI_18030 GPR endopeptidase K06012 gpr; spore protease [EC:3.4.24.78]
D ROI_37620 pyroglutamyl-peptidase I . Cysteine peptidase. MEROPS family C15 K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D ROI_30870 GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D ROI_30360 Cell wall-associated hydrolases (invasion-associated proteins) K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D ROI_38780 Cell wall-associated hydrolases (invasion-associated proteins) K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D ROI_16790 Cell wall-associated hydrolases (invasion-associated proteins) K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D ROI_12390 Cell wall-associated hydrolases (invasion-associated proteins) K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D ROI_38960 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D ROI_11740 Glutamate synthase domain 2 K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D ROI_36100 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D ROI_08230 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D ROI_18060 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D ROI_07010 Penicillin V acylase and related amidases K24041 yxeI; penicillin V amidase [EC:3.5.1.11]
D ROI_05990 Penicillin V acylase and related amidases K24041 yxeI; penicillin V amidase [EC:3.5.1.11]
D ROI_29700 LPXTG-site transpeptidase (sortase) family protein K07284 srtA; sortase A [EC:3.4.22.70]
D ROI_05780 Uncharacterized protein conserved in bacteria K08600 srtB; sortase B [EC:3.4.22.71]
D ROI_14910 sortase, SrtB family K08600 srtB; sortase B [EC:3.4.22.71]
D ROI_03800 dipeptidase A. Cysteine peptidase. MEROPS family C69 K08659 pepDA; dipeptidase [EC:3.4.-.-]
D ROI_00180 Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide K07813 agrB; accessory gene regulator B
D ROI_18170 Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide K07813 agrB; accessory gene regulator B
D ROI_31590 Accessory gene regulator B. K07813 agrB; accessory gene regulator B
D ROI_31620 Accessory gene regulator B. K07813 agrB; accessory gene regulator B
D ROI_02920 Accessory gene regulator B. K07813 agrB; accessory gene regulator B
D ROI_03230 Accessory gene regulator B. K07813 agrB; accessory gene regulator B
D ROI_36240 CAAX amino terminal protease family. K07052 K07052; CAAX protease family protein
D ROI_38060 CAAX amino terminal protease family. K07052 K07052; CAAX protease family protein
D ROI_11360 Predicted metal-dependent membrane protease K07052 K07052; CAAX protease family protein
D ROI_13740 CAAX amino terminal protease family. K07052 K07052; CAAX protease family protein
D ROI_23710 oligopeptidase F. Metallo peptidase. MEROPS family M03B K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D ROI_27900 Predicted carboxypeptidase K01308 yqgT; g-D-glutamyl-meso-diaminopimelate peptidase [EC:3.4.19.11]
D ROI_13190 Predicted Zn-dependent peptidases, insulinase-like K06972 PITRM1; presequence protease [EC:3.4.24.-]
D ROI_08930 Zn-dependent dipeptidase, microsomal dipeptidase homolog K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D ROI_33380 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D ROI_23500 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D ROI_13340 Membrane proteins related to metalloendopeptidases K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D ROI_23490 Membrane proteins related to metalloendopeptidases K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D ROI_16810 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D ROI_14180 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D ROI_10360 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D ROI_00520 Zn-dependent carboxypeptidase K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D ROI_06000 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D ROI_29980 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D ROI_21410 RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D ROI_08310 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component K02172 blaR1; bla regulator protein blaR1
D ROI_08430 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107]
D ROI_18110 Subtilisin-like serine proteases K14647 vpr; minor extracellular serine protease Vpr [EC:3.4.21.-]
D ROI_21780 Subtilisin-like serine proteases K17734 aprX; serine protease AprX [EC:3.4.21.-]
D ROI_21800 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D ROI_21850 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D ROI_33400 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D ROI_22990 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D ROI_29030 ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D ROI_23210 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D ROI_02300 signal peptidase I . Serine peptidase. MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89]
D ROI_11120 signal peptidase I, bacterial type K03100 lepB; signal peptidase I [EC:3.4.21.89]
D ROI_25690 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D ROI_30480 C-terminal peptidase (prc) K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D ROI_25030 stage IV sporulation protein B K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116]
D ROI_05450 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D ROI_10950 Collagenase and related proteases K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D ROI_24140 Collagenase and related proteases K08303 prtC; U32 family peptidase [EC:3.4.-.-]
C 01003 Glycosyltransferases [BR:rim01003]
D ROI_16830 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D ROI_22550 glycogen/starch synthases, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D ROI_25000 glycogen/starch synthases, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D ROI_30290 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D ROI_01390 penicillin-binding protein, 1A family K18770 pbpD; penicillin-binding protein 4 [EC:2.4.99.28 3.4.16.4]
D ROI_25870 Glycosyltransferase K21011 pelF; polysaccharide biosynthesis protein PelF
D ROI_08220 bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D ROI_30410 Teichoic acid biosynthesis proteins K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:rim01005]
D ROI_08020 Glycosyltransferases involved in cell wall biogenesis K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D ROI_08030 Glycosyltransferases involved in cell wall biogenesis K12999 rgpI; glucosyltransferase [EC:2.4.1.-]
D ROI_04930 Sugar transferases involved in lipopolysaccharide synthesis K13012 wbqP; O-antigen biosynthesis protein WbqP
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rim01011]
D ROI_15660 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D ROI_30030 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D ROI_15560 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D ROI_26030 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D ROI_28160 UDP-N-acetylmuramyl-tripeptide synthetases K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D ROI_22520 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D ROI_05450 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D ROI_26040 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D ROI_34870 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D ROI_22570 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D ROI_23300 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D ROI_30290 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D ROI_01390 penicillin-binding protein, 1A family K18770 pbpD; penicillin-binding protein 4 [EC:2.4.99.28 3.4.16.4]
D ROI_26050 Cell division protein FtsI/penicillin-binding protein 2 K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D ROI_26060 Cell division protein FtsI/penicillin-binding protein 2 K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D ROI_24120 Cell division protein FtsI/penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A
D ROI_21800 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D ROI_21850 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D ROI_33400 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D ROI_22990 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D ROI_30360 Cell wall-associated hydrolases (invasion-associated proteins) K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D ROI_38780 Cell wall-associated hydrolases (invasion-associated proteins) K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D ROI_16790 Cell wall-associated hydrolases (invasion-associated proteins) K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D ROI_12390 Cell wall-associated hydrolases (invasion-associated proteins) K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D ROI_13340 Membrane proteins related to metalloendopeptidases K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D ROI_23490 Membrane proteins related to metalloendopeptidases K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D ROI_29700 LPXTG-site transpeptidase (sortase) family protein K07284 srtA; sortase A [EC:3.4.22.70]
D ROI_05780 Uncharacterized protein conserved in bacteria K08600 srtB; sortase B [EC:3.4.22.71]
D ROI_14910 sortase, SrtB family K08600 srtB; sortase B [EC:3.4.22.71]
D ROI_40750 SpoIID/LytB domain K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29]
D ROI_34610 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D ROI_07670 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D ROI_29960 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:rim01004]
D ROI_01710 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D ROI_01720 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ROI_13790 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ROI_01740 beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D ROI_01700 putative enoyl-(acyl-carrier-protein) reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D ROI_10510 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D ROI_16820 Predicted membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D ROI_11240 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D ROI_16750 1-acyl-sn-glycerol-3-phosphate acyltransferases K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:rim01006]
D ROI_25090 Geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D ROI_21380 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D ROI_22880 tRNA isopentenyltransferase (miaA) K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D ROI_08160 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases K14136 K14136; decaprenyl-phosphate phosphoribosyltransferase [EC:2.4.2.45]
C 01007 Amino acid related enzymes [BR:rim01007]
D ROI_17780 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D ROI_20740 glutamyl-tRNA synthetase, bacterial family K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D ROI_40090 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D ROI_11090 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D ROI_10240 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D ROI_25590 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D ROI_40610 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D ROI_00550 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D ROI_29200 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D ROI_24380 leucyl-tRNA synthetase, eubacterial and mitochondrial family K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D ROI_05620 Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D ROI_09900 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D ROI_00710 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D ROI_28550 aspartyl-tRNA synthetase, archaeal type K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D ROI_09890 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D ROI_13230 glycyl-tRNA synthetase, dimeric type K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D ROI_35710 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D ROI_19810 prolyl-tRNA synthetase, family II K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D ROI_15750 prolyl-tRNA synthetase, family I K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D ROI_34470 threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D ROI_17110 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D ROI_22260 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D ROI_22270 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D ROI_38040 Aspartate/tyrosine/aromatic aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D ROI_10700 LL-diaminopimelate aminotransferase apoenzyme K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D ROI_16280 Aspartate/tyrosine/aromatic aminotransferase K10907 K10907; aminotransferase [EC:2.6.1.-]
D ROI_38050 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D ROI_24840 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D ROI_17940 acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D ROI_40230 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D ROI_00500 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D ROI_13140 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:rim00194]
D ROI_34170 ATP synthase F1 subcomplex epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D ROI_01140 ATP synthase F1 subcomplex epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D ROI_34160 ATP synthase F1 subcomplex beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D ROI_01130 ATP synthase F1 subcomplex beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D ROI_01120 ATP synthase, F1 gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D ROI_34150 ATP synthase F1 subcomplex gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D ROI_34140 ATP synthase F1 subcomplex alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D ROI_01100 ATP synthase, F1 delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D ROI_34130 ATP synthase F1 subcomplex delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D ROI_01090 ATP synthase F0 subcomplex B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D ROI_01080 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D ROI_34110 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D ROI_34100 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:rim03000]
D ROI_02060 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ROI_11980 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ROI_31930 Site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ROI_09830 AraC-type DNA-binding domain-containing proteins K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D ROI_20410 AraC-type DNA-binding domain-containing proteins K07506 K07506; AraC family transcriptional regulator
D ROI_08250 AraC-type DNA-binding domain-containing proteins K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D ROI_34300 Transcriptional regulators of sugar metabolism K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D ROI_38370 Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ROI_36970 Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ROI_38740 Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ROI_16840 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ROI_26730 Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ROI_29120 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ROI_09960 Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ROI_24030 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ROI_03480 Transcriptional regulators K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D ROI_33900 Transcriptional regulators K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D ROI_36290 Transcriptional regulators K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D ROI_28390 transcriptional regulator, GntR family K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D ROI_01330 Transcriptional regulators K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D ROI_38470 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D ROI_06860 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D ROI_17800 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D ROI_28680 Transcriptional regulator K21453 icaR; TetR/AcrR family transcriptional regulator, biofilm operon repressor
D ROI_39130 ATP-dependent transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D ROI_28470 Transcriptional regulators K18909 mepR; MarR family transcriptional regulator, repressor for mepA
D ROI_03430 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D ROI_20370 Fe2+/Zn2+ uptake regulation proteins K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D ROI_13330 Fe2+/Zn2+ uptake regulation proteins K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D ROI_40860 Fe2+/Zn2+ uptake regulation proteins K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D ROI_35570 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D ROI_02180 transcriptional regulator, BadM/Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D ROI_36190 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
D ROI_08910 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
D ROI_02220 Mn-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D ROI_08300 Predicted transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D ROI_03460 Tetratricopeptide repeat./Helix-turn-helix. K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D ROI_30430 transcriptional regulator, CdaR family K02647 cdaR; carbohydrate diacid regulator
D ROI_11310 transcriptional regulator, CdaR family K02647 cdaR; carbohydrate diacid regulator
D ROI_20840 Pleiotropic transcriptional repressor K03706 codY; transcriptional pleiotropic repressor
D ROI_26340 Predicted transcriptional regulator K07727 K07727; putative transcriptional regulator
D ROI_05380 Predicted transcriptional regulator K07727 K07727; putative transcriptional regulator
D ROI_33120 Helix-turn-helix. K07729 K07729; putative transcriptional regulator
D ROI_35040 Helix-turn-helix. K07729 K07729; putative transcriptional regulator
D ROI_19140 transcriptional antiterminator, BglG family K03488 licT; beta-glucoside operon transcriptional antiterminator
D ROI_41330 Uncharacterized protein conserved in bacteria K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D ROI_36560 looped-hinge helix DNA binding domain, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D ROI_32600 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ROI_32770 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ROI_09220 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ROI_12510 Predicted transcriptional regulators K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ROI_08990 Transcriptional regulators, similar to M. xanthus CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D ROI_40510 Glycerol-3-phosphate responsive antiterminator (mRNA-binding) K02443 glpP; glycerol uptake operon antiterminator
D ROI_25050 transcriptional regulator, ArgR family K03402 argR; transcriptional regulator of arginine metabolism
D ROI_13270 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D ROI_27980 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
C 03021 Transcription machinery [BR:rim03021]
D ROI_38810 DEAD_2. K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D ROI_13660 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D ROI_13670 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D ROI_23580 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D ROI_28270 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor
D ROI_12190 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D ROI_40060 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D ROI_40120 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D ROI_29270 RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, sigma-B/F/G subfamily K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D ROI_25960 RNA polymerase, sigma subunit, RpsG/SigG K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D ROI_25980 RNA polymerase, sigma 29 subunit, SigE K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D ROI_20800 RNA polymerase, sigma 27/28 subunit, RpsK/SigK K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D ROI_10270 RNA polymerase, sigma 30 subunit, SigH K27000 sigH; RNA polymerase sigma-H factor
D ROI_21230 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D ROI_21630 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D ROI_25120 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D ROI_07560 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D ROI_27210 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D ROI_05610 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D ROI_17700 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:rim03019]
D ROI_10530 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D ROI_10910 conserved hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D ROI_38680 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D ROI_14360 uncharacterized domain HDIG K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D ROI_40780 Superfamily II DNA and RNA helicases K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D ROI_15370 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ROI_38650 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ROI_21750 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D ROI_17700 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D ROI_37250 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D ROI_13290 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D ROI_20620 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ROI_40340 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D ROI_21490 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D ROI_07130 carbon storage regulator (csrA) K03563 csrA; carbon storage regulator
D ROI_41030 Global regulator protein family. K03563 csrA; carbon storage regulator
D ROI_30040 Predicted P-loop-containing kinase K06958 rapZ; RNase adapter protein RapZ
C 03041 Spliceosome
C 03011 Ribosome [BR:rim03011]
D ROI_00610 Ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D ROI_21270 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D ROI_14010 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D ROI_14240 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D ROI_14120 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D ROI_33820 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6
D ROI_14090 Ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D ROI_13940 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D ROI_14230 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11
D ROI_13680 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D ROI_14220 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D ROI_14080 Ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D ROI_21730 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D ROI_10610 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16
D ROI_33840 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18
D ROI_13990 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D ROI_26560 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21
D ROI_07580 ribosomal protein L1, bacterial/chloroplast K02863 RP-L1; large subunit ribosomal protein L1
D ROI_13980 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2
D ROI_13950 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D ROI_13960 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4
D ROI_33970 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9
D ROI_07570 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D ROI_07600 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12
D ROI_16390 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D ROI_14050 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D ROI_14140 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D ROI_14020 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16
D ROI_14260 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17
D ROI_14110 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D ROI_10680 ribosomal protein L19, bacterial type K02884 RP-L19; large subunit ribosomal protein L19
D ROI_21560 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D ROI_23290 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21
D ROI_14000 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D ROI_13970 Ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D ROI_14060 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D ROI_23270 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27
D ROI_23850 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28
D ROI_14030 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D ROI_14130 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D ROI_17710 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D ROI_10490 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D ROI_07540 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33
D ROI_32490 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D ROI_21550 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D ROI_R_41950 16S; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ROI_R_41940 23S; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:rim03009]
D ROI_10530 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D ROI_13200 GTP-binding protein Era K03595 era; GTPase
D ROI_23260 Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D ROI_21630 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D ROI_25120 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D ROI_07560 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D ROI_23480 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D ROI_40720 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D ROI_28110 ribosomal RNA small subunit methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D ROI_23540 RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D ROI_32550 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D ROI_06930 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D ROI_33730 conserved hypothetical protein TIGR00096 K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D ROI_10260 rRNA methylase, putative, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D ROI_22630 conserved hypothetical protein TIGR00246 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D ROI_02700 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D ROI_13910 Predicted SAM-dependent methyltransferases K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D ROI_28100 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D ROI_14370 23S rRNA m(5)U-1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D ROI_38110 23S rRNA m(5)U-1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D ROI_23100 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D ROI_15740 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D ROI_20790 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D ROI_25190 ribosomal large subunit pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D ROI_17280 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D ROI_10650 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D ROI_23570 SSU ribosomal protein S12P methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D ROI_10820 [LSU ribosomal protein L11P]-lysine N-methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D ROI_10890 conserved hypothetical protein TIGR00250 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D ROI_10250 Uncharacterized protein conserved in bacteria K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
D ROI_40780 Superfamily II DNA and RNA helicases K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D ROI_28060 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D ROI_11230 ribosome-associated GTPase EngA K03977 engA; GTPase
D ROI_11110 ribosome biogenesis GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A
D ROI_09100 GTP-binding protein HflX K03665 hflX; GTPase
D ROI_34040 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D ROI_09160 (p)ppGpp synthetase, RelA/SpoT family K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D ROI_21680 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D ROI_21620 Uncharacterized protein conserved in bacteria K09748 rimP; ribosome maturation factor RimP
D ROI_32460 Uncharacterized conserved protein K14761 rlbA; ribosome-associated protein
D ROI_22790 conserved hypothetical protein TIGR00043 K07042 ybeY; probable rRNA maturation factor
D ROI_23250 conserved hypothetical protein TIGR00253 K07574 yhbY; RNA-binding protein
D ROI_16690 SSU ribosomal protein S30P/sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor
D ROI_28000 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:rim03016]
D ROI_17300 RNAse Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D ROI_15770 uncharacterized domain HDIG K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D ROI_33100 Uncharacterized conserved protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D ROI_19810 prolyl-tRNA synthetase, family II K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D ROI_15750 prolyl-tRNA synthetase, family I K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D ROI_00550 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D ROI_24380 leucyl-tRNA synthetase, eubacterial and mitochondrial family K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D ROI_40610 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D ROI_17780 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D ROI_25590 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D ROI_05620 Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D ROI_09900 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D ROI_17110 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D ROI_00710 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D ROI_13230 glycyl-tRNA synthetase, dimeric type K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D ROI_34470 threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D ROI_35710 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D ROI_10240 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D ROI_29200 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D ROI_09890 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D ROI_22260 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D ROI_22270 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D ROI_40090 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D ROI_11090 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D ROI_23160 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D ROI_34860 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D ROI_33390 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D ROI_36120 pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D ROI_21700 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D ROI_02260 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ROI_19050 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ROI_10840 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ROI_34040 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D ROI_22880 tRNA isopentenyltransferase (miaA) K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D ROI_32530 tRNA modification GTPase trmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D ROI_32540 glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D ROI_02500 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D ROI_32500 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D ROI_41960 Bacterial RNase P class A K01978 rnpB; M1 RNA
D ROI_28550 aspartyl-tRNA synthetase, archaeal type K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D ROI_20740 glutamyl-tRNA synthetase, bacterial family K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D ROI_16080 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D ROI_40900 Cytosine/adenosine deaminases K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D ROI_05590 tRNA-U20-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D ROI_24200 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D ROI_10870 MiaB-like tRNA modifying enzyme K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D ROI_10660 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D ROI_28260 Predicted SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D ROI_16290 Predicted rRNA methylase (SpoU class) K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D ROI_33500 Predicted O-methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D ROI_37260 rRNA methylases K03437 spoU; RNA methyltransferase, TrmH family
D ROI_10170 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D ROI_19240 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D ROI_23170 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D ROI_22280 S-adenosylmethionine--tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D ROI_13010 tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D ROI_10850 thiazole biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D ROI_15910 tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D ROI_17270 Inactive homolog of metal-dependent proteases, putative molecular chaperone K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D ROI_17320 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D ROI_17260 conserved hypothetical nucleotide-binding protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D ROI_06640 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D ROI_10460 Predicted nucleotidyltransferase K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
D ROI_38680 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D ROI_21750 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:rim03012]
D ROI_21540 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3
D ROI_22490 ATPase components of ABC transporters with duplicated ATPase domains K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D ROI_17450 ATPase components of ABC transporters with duplicated ATPase domains K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D ROI_21280 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D ROI_13710 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D ROI_17740 bacterial peptide chain release factor 1 (bRF-1) K02835 prfA; peptide chain release factor 1
D ROI_21370 ribosome recycling factor K02838 frr; ribosome recycling factor
D ROI_17730 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D ROI_15610 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D ROI_14200 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D ROI_27930 translation elongation factor P (EF-P) K02356 efp; elongation factor P
D ROI_30500 bacterial peptide chain release factor 2 (bRF-2) K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:rim03110]
D ROI_36920 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D ROI_00930 ATPases with chaperone activity, ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D ROI_29040 endopeptidase Clp ATP-binding regulatory subunit (clpX) K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D ROI_35590 endopeptidase Clp ATP-binding regulatory subunit (clpX) K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D ROI_19430 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG
D ROI_13290 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D ROI_20620 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ROI_13300 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D ROI_28200 DnaJ-class molecular chaperone with C-terminal Zn finger domain K03686 dnaJ; molecular chaperone DnaJ
D ROI_35450 Disulfide bond chaperones of the HSP33 family K04083 hslO; molecular chaperone Hsp33
D ROI_13280 Molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE
D ROI_00360 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein
D ROI_20610 Co-chaperonin GroES (HSP10) K04078 groES; chaperonin GroES
D ROI_08430 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107]
D ROI_06000 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D ROI_29980 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D ROI_34100 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D ROI_19360 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D ROI_19340 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D ROI_18110 Subtilisin-like serine proteases K14647 vpr; minor extracellular serine protease Vpr [EC:3.4.21.-]
D ROI_35720 Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D ROI_15630 hypothetical protein K07533 prsA; foldase protein PrsA [EC:5.2.1.8]
D ROI_12610 PPIC-type PPIASE domain. K07533 prsA; foldase protein PrsA [EC:5.2.1.8]
D ROI_01630 Thioredoxin domain-containing protein K03671 TXN; thioredoxin
D ROI_25410 thioredoxin K03671 TXN; thioredoxin
D ROI_03420 thioredoxin K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:rim04131]
D ROI_20300 Alpha-mannosidase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]
D ROI_38900 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D ROI_32090 Fructose-2,6-bisphosphatase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D ROI_29080 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D ROI_19430 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG
D ROI_40320 Permeases of the major facilitator superfamily K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system
C 03051 Proteasome [BR:rim03051]
D ROI_19430 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:rim03032]
D ROI_02060 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ROI_11980 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ROI_31930 Site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ROI_15830 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D ROI_32480 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D ROI_33980 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D ROI_09690 phage DNA replication protein (predicted replicative helicase loader) K02315 dnaC; DNA replication protein DnaC
D ROI_14460 phage DNA replication protein (predicted replicative helicase loader) K02315 dnaC; DNA replication protein DnaC
D ROI_15530 replicative DNA helicase loader DnaI K02315 dnaC; DNA replication protein DnaC
D ROI_38170 phage DNA replication protein (predicted replicative helicase loader) K02315 dnaC; DNA replication protein DnaC
D ROI_28280 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D ROI_33830 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D ROI_37070 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D ROI_21430 exonuclease, DNA polymerase III, epsilon subunit family K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D ROI_21440 DNA polymerase III, alpha subunit (gram-positive type) K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D ROI_32470 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ROI_18010 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D ROI_33470 DNA polymerase III, gamma/tau subunits K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D ROI_16210 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ROI_41090 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ROI_40980 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D ROI_10370 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D ROI_25180 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D ROI_32430 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D ROI_11350 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D ROI_32440 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D ROI_11330 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D ROI_20830 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:rim03036]
D ROI_02060 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ROI_11980 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ROI_31930 Site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ROI_10530 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D ROI_15830 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D ROI_32480 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D ROI_10540 condensin subunit Smc K03529 smc; chromosome segregation protein
D ROI_21820 Uncharacterized conserved protein K05896 scpA; segregation and condensation protein A
D ROI_21830 Predicted transcriptional regulator containing the HTH domain K06024 scpB; segregation and condensation protein B
D ROI_15870 Septum formation initiator. K13052 divIC; cell division protein DivIC
D ROI_30440 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D ROI_26070 Septum formation initiator. K03586 ftsL; cell division protein FtsL
D ROI_26020 Bacterial cell division membrane protein K03588 ftsW; cell division protein FtsW
D ROI_30450 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D ROI_24150 cell division protein ZapA K09888 zapA; cell division protein ZapA
D ROI_34610 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D ROI_07670 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D ROI_29960 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D ROI_24870 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D ROI_24860 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D ROI_22950 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D ROI_24850 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D ROI_22960 Septum formation topological specificity factor MinE. K03608 minE; cell division topological specificity factor
D ROI_23040 Uncharacterized protein conserved in bacteria K09772 sepF; cell division inhibitor SepF
D ROI_04240 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D ROI_22910 Actin-like ATPase involved in cell morphogenesis K03569 mreB; rod shape-determining protein MreB and related proteins
D ROI_22920 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D ROI_22930 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D ROI_22970 Bacterial cell division membrane protein K05837 rodA; rod shape determining protein RodA
D ROI_32590 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D ROI_09210 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D ROI_14650 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D ROI_18120 CobQ/CobB/MinD/ParA nucleotide binding domain. K03496 parA; chromosome partitioning protein
D ROI_32600 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ROI_32770 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ROI_09220 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ROI_12510 Predicted transcriptional regulators K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ROI_32540 glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D ROI_32550 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D ROI_18900 Site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD
D ROI_25290 tyrosine recombinase XerD subunit K04763 xerD; integrase/recombinase XerD
D ROI_08970 Site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD
D ROI_00970 Site-specific recombinase XerD K04763 xerD; integrase/recombinase XerD
D ROI_37280 Protein involved in cell division K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D ROI_29060 ribosome biogenesis GTP-binding protein YsxC/EngB K03978 engB; GTP-binding protein
D ROI_30050 conserved hypothetical protein K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:rim03400]
D ROI_10140 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D ROI_08650 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D ROI_22670 Predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D ROI_38810 DEAD_2. K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D ROI_29000 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ROI_26290 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ROI_18990 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ROI_11260 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D ROI_08250 AraC-type DNA-binding domain-containing proteins K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D ROI_24830 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D ROI_13410 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D ROI_36130 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D ROI_25180 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D ROI_10370 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D ROI_27770 Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
D ROI_04170 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D ROI_32130 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ROI_38090 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ROI_17580 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ROI_20750 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ROI_13660 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D ROI_13670 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D ROI_23580 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D ROI_15620 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D ROI_22840 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D ROI_14330 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D ROI_22870 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D ROI_25110 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D ROI_25100 Exonuclease VII small subunit. K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D ROI_37070 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D ROI_21430 exonuclease, DNA polymerase III, epsilon subunit family K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D ROI_21440 DNA polymerase III, alpha subunit (gram-positive type) K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D ROI_32470 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ROI_18010 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D ROI_33470 DNA polymerase III, gamma/tau subunits K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D ROI_16210 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ROI_41090 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ROI_40980 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D ROI_33830 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D ROI_12000 T/G mismatch-specific endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
D ROI_04280 helicase, putative, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D ROI_25380 protein RecA K03553 recA; recombination protein RecA
D ROI_24170 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D ROI_24160 Holliday junction DNA helicase, RuvB subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D ROI_19580 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
D ROI_19590 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
D ROI_19570 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D ROI_00960 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D ROI_32450 recF protein K03629 recF; DNA replication and repair protein RecF
D ROI_32140 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D ROI_17770 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D ROI_23820 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D ROI_13210 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D ROI_41360 Recombinational DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR
D ROI_25040 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D ROI_23440 Penicillin-binding protein-related factor A, putative recombinase K03700 recU; recombination protein U
D ROI_12570 recombination helicase AddA, Firmicutes type K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D ROI_12560 ATP-dependent nuclease, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D ROI_32430 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D ROI_11350 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D ROI_32440 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D ROI_11330 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D ROI_20830 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D ROI_15830 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D ROI_24460 Nucleotidyltransferase/DNA polymerase involved in DNA repair K03502 umuC; DNA polymerase V
D ROI_23210 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D ROI_25370 Uncharacterized protein conserved in bacteria K03565 recX; regulatory protein
D ROI_18930 Rad3-related DNA helicases K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D ROI_21690 Exopolyphosphatase-related proteins K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:rim03029]
D ROI_21540 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3
D ROI_21280 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D ROI_13710 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D ROI_13200 GTP-binding protein Era K03595 era; GTPase
D ROI_40090 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D ROI_24380 leucyl-tRNA synthetase, eubacterial and mitochondrial family K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D ROI_09900 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D ROI_13230 glycyl-tRNA synthetase, dimeric type K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D ROI_25590 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D ROI_28520 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D ROI_28510 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D ROI_33830 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D ROI_13290 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D ROI_13280 Molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE
D ROI_20620 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ROI_20610 Co-chaperonin GroES (HSP10) K04078 groES; chaperonin GroES
D ROI_13300 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D ROI_28200 DnaJ-class molecular chaperone with C-terminal Zn finger domain K03686 dnaJ; molecular chaperone DnaJ
D ROI_02260 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ROI_19050 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ROI_10840 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ROI_19430 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:rim02000]
D ROI_28980 ABC-type multidrug transport system, ATPase and permease components K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_19620 ABC-type multidrug transport system, ATPase and permease components K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_27300 ABC-type multidrug transport system, ATPase and permease components K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_19640 ABC-type multidrug transport system, ATPase and permease components K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_28990 ABC-type multidrug transport system, ATPase and permease components K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_27290 ABC-type multidrug transport system, ATPase and permease components K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_08200 ABC-type multidrug transport system, ATPase and permease components K24846 pglK; ATP-binding cassette, subfamily B, bacterial PglK [EC:7.5.2.-]
D ROI_25240 ABC-type multidrug transport system, ATPase and permease components K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_28480 ABC-type multidrug transport system, ATPase and permease components K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_06420 ABC-type multidrug transport system, ATPase and permease components K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_38450 ABC-type multidrug transport system, ATPase and permease components K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_38460 ABC-type multidrug transport system, ATPase and permease components K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_28490 ABC-type multidrug transport system, ATPase and permease components K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_06430 ABC-type multidrug transport system, ATPase and permease components K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_25230 ABC-type multidrug transport system, ATPase and permease components K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D ROI_16530 ABC-type multidrug transport system, ATPase and permease components K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D ROI_26530 ABC-type multidrug transport system, ATPase and permease components K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D ROI_21910 ABC-type multidrug transport system, ATPase and permease components K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D ROI_29910 ABC-type multidrug transport system, ATPase and permease components K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D ROI_16520 ABC-type multidrug transport system, ATPase and permease components K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D ROI_16510 hypothetical protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D ROI_37380 ATPase components of ABC transporters with duplicated ATPase domains K15738 uup; ABC transport system ATP-binding/permease protein
D ROI_15940 sulfate/thiosulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D ROI_15950 sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D ROI_15960 sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D ROI_15970 sulfate ABC transporter, ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D ROI_02570 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D ROI_02580 molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D ROI_02590 ABC-type sulfate/molybdate transport systems, ATPase component K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D ROI_06290 ABC-type Fe3+ transport system, periplasmic component K02012 afuA; iron(III) transport system substrate-binding protein
D ROI_06310 ABC-type Fe3+ transport system, permease component K02011 afuB; iron(III) transport system permease protein
D ROI_06300 ABC-type spermidine/putrescine transport systems, ATPase components K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D ROI_24980 Spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D ROI_24970 ABC-type spermidine/putrescine transport system, permease component II K11070 potC; spermidine/putrescine transport system permease protein
D ROI_24960 ABC-type spermidine/putrescine transport system, permease component I K11071 potB; spermidine/putrescine transport system permease protein
D ROI_24950 spermidine/putrescine ABC transporter ATP-binding subunit K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D ROI_33620 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D ROI_33700 ABC transporter, substrate-binding protein, aliphatic sulfonates family K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D ROI_15440 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D ROI_33710 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D ROI_33720 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D ROI_15430 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D ROI_11300 carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-) K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D ROI_26740 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K25088 musG; maltose transport system permease protein
D ROI_37920 Maltose-binding periplasmic proteins/domains K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D ROI_17950 hypothetical protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D ROI_20720 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D ROI_37930 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D ROI_37940 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D ROI_03520 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D ROI_36300 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D ROI_36310 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D ROI_36320 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D ROI_29150 hypothetical protein K10240 cebE; cellobiose transport system substrate-binding protein
D ROI_20430 hypothetical protein K10240 cebE; cellobiose transport system substrate-binding protein
D ROI_29160 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K10241 cebF; cellobiose transport system permease protein
D ROI_20440 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K10241 cebF; cellobiose transport system permease protein
D ROI_29170 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K10242 cebG; cellobiose transport system permease protein
D ROI_20450 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K10242 cebG; cellobiose transport system permease protein
D ROI_24310 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K10188 lacE; lactose/L-arabinose transport system substrate-binding protein
D ROI_24300 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K10189 lacF; lactose/L-arabinose transport system permease protein
D ROI_38310 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K10190 lacG; lactose/L-arabinose transport system permease protein
D ROI_32890 hypothetical protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D ROI_24780 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K17318 lplA; putative aldouronate transport system substrate-binding protein
D ROI_06470 ABC-type sugar transport system, periplasmic component K17318 lplA; putative aldouronate transport system substrate-binding protein
D ROI_23970 ABC-type sugar transport system, periplasmic component K17318 lplA; putative aldouronate transport system substrate-binding protein
D ROI_24720 ABC-type sugar transport system, periplasmic component K17318 lplA; putative aldouronate transport system substrate-binding protein
D ROI_37820 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K17318 lplA; putative aldouronate transport system substrate-binding protein
D ROI_10000 ABC-type sugar transport system, periplasmic component K17318 lplA; putative aldouronate transport system substrate-binding protein
D ROI_32870 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K17319 lplB; putative aldouronate transport system permease protein
D ROI_24800 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K17319 lplB; putative aldouronate transport system permease protein
D ROI_06480 ABC-type polysaccharide transport system, permease component K17319 lplB; putative aldouronate transport system permease protein
D ROI_23950 ABC-type polysaccharide transport system, permease component K17319 lplB; putative aldouronate transport system permease protein
D ROI_37830 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K17319 lplB; putative aldouronate transport system permease protein
D ROI_32880 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K17320 lplC; putative aldouronate transport system permease protein
D ROI_24790 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K17320 lplC; putative aldouronate transport system permease protein
D ROI_37840 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K17320 lplC; putative aldouronate transport system permease protein
D ROI_06490 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K17320 lplC; putative aldouronate transport system permease protein
D ROI_23940 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K17320 lplC; putative aldouronate transport system permease protein
D ROI_36070 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K10540 mglB; methyl-galactoside transport system substrate-binding protein
D ROI_36000 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K10540 mglB; methyl-galactoside transport system substrate-binding protein
D ROI_36020 monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-) K10541 mglC; methyl-galactoside transport system permease protein
D ROI_36010 monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D ROI_36980 ABC-type sugar transport system, periplasmic component K25067 fcsSBP; fucose transport system substrate-binding protein
D ROI_36990 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K25068 K25068; fucose transport system permease protein
D ROI_37000 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K25069 K25069; fucose transport system permease protein
D ROI_11790 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K23508 ytfQ; galactofuranose transport system substrate-binding protein
D ROI_11830 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) K23508 ytfQ; galactofuranose transport system substrate-binding protein
D ROI_11820 monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-) K23509 ytfT; galactofuranose transport system permease protein
D ROI_11810 monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-) K23509 ytfT; galactofuranose transport system permease protein
D ROI_11800 monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D ROI_16870 carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) K17234 araN; arabinooligosaccharide transport system substrate-binding protein
D ROI_16880 carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) K17235 araP; arabinooligosaccharide transport system permease protein
D ROI_16890 carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) K17236 araQ; arabinooligosaccharide transport system permease protein
D ROI_10980 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins
D ROI_11000 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein
D ROI_11010 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein
D ROI_06280 Transcriptional regulators K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D ROI_20250 ABC-type sugar transport system, periplasmic component K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D ROI_40350 phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1) K02040 pstS; phosphate transport system substrate-binding protein
D ROI_40360 phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1) K02037 pstC; phosphate transport system permease protein
D ROI_40370 phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1) K02038 pstA; phosphate transport system permease protein
D ROI_40380 phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D ROI_34420 phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D ROI_34440 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D ROI_34450 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D ROI_34430 phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D ROI_01220 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain K02424 tcyA; L-cystine transport system substrate-binding protein
D ROI_01210 amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-) K10009 tcyB; L-cystine transport system permease protein
D ROI_01200 ABC-type polar amino acid transport system, ATPase component K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D ROI_10780 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K17077 artQ; arginine/lysine/histidine transport system permease protein
D ROI_10800 amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D ROI_07850 amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D ROI_07860 amino acid/amide ABC transporter membrane protein 1, HAAT family (TC 3.A.1.4.-) K01997 livH; branched-chain amino acid transport system permease protein
D ROI_07870 amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-) K01998 livM; branched-chain amino acid transport system permease protein
D ROI_07880 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family (TC 3.A.1.4.-) K01995 livG; branched-chain amino acid transport system ATP-binding protein
D ROI_07890 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-) K01996 livF; branched-chain amino acid transport system ATP-binding protein
D ROI_03930 ABC-type metal ion transport system, periplasmic component/surface antigen K02073 metQ; D-methionine transport system substrate-binding protein
D ROI_03920 ABC-type metal ion transport system, permease component K02072 metI; D-methionine transport system permease protein
D ROI_03910 ABC-type metal ion transport system, ATPase component K02071 metN; D-methionine transport system ATP-binding protein
D ROI_26490 ABC-type uncharacterized transport system, periplasmic component K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D ROI_04310 ABC-type uncharacterized transport system, periplasmic component K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D ROI_26480 ABC-type uncharacterized transport system, permease component K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D ROI_04300 ABC-type uncharacterized transport system, permease component K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D ROI_26470 ABC-type uncharacterized transport system, ATPase component K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D ROI_04290 ABC-type uncharacterized transport system, ATPase component K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D ROI_06670 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D ROI_06690 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K15582 oppC; oligopeptide transport system permease protein
D ROI_06700 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain K15583 oppD; oligopeptide transport system ATP-binding protein
D ROI_06710 ATPase components of various ABC-type transport systems, contain duplicated ATPase K10823 oppF; oligopeptide transport system ATP-binding protein
D ROI_07780 Bacterial extracellular solute-binding proteins, family 5 Middle. K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ROI_17820 ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ROI_07790 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02033 ABC.PE.P; peptide/nickel transport system permease protein
D ROI_17850 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02033 ABC.PE.P; peptide/nickel transport system permease protein
D ROI_07800 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D ROI_17860 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D ROI_07810 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain K02031 ddpD; peptide/nickel transport system ATP-binding protein
D ROI_17830 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component K02031 ddpD; peptide/nickel transport system ATP-binding protein
D ROI_17840 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain K02032 ddpF; peptide/nickel transport system ATP-binding protein
D ROI_33530 ABC-type Fe3+-hydroxamate transport system, periplasmic component K25308 fhuD; ferric hydroxamate/heme transport system substrate-binding protein
D ROI_33540 ABC-type Fe3+-siderophore transport system, permease component K25288 fhuB; ferric hydroxamate/heme transport system permease protein
D ROI_33550 ABC-type Fe3+-siderophore transport system, permease component K25289 fhuG; ferric hydroxamate/heme transport system permease protein
D ROI_33560 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components K25290 fhuA; ferric hydroxamate/heme transport system ATP-binding protein [EC:7.2.2.16]
D ROI_01420 ABC-type Fe3+-hydroxamate transport system, periplasmic component K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D ROI_01470 ABC-type Fe3+-siderophore transport system, permease component K02015 ABC.FEV.P; iron complex transport system permease protein
D ROI_01460 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D ROI_06820 ABC-type Fe3+-hydroxamate transport system, periplasmic component K25034 btuF; cobalamin transport system substrate-binding protein
D ROI_06830 ABC-type Fe3+-siderophore transport system, permease component K25027 btuC; cobalamin transport system permease protein
D ROI_06840 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D ROI_07710 ABC-type Co2+ transport system, permease component K02007 cbiM; cobalt/nickel transport system permease protein
D ROI_07730 ABC-type cobalt transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D ROI_40190 Uncharacterized conserved protein K03523 bioY; biotin transport system substrate-specific component
D ROI_26800 Uncharacterized conserved protein K03523 bioY; biotin transport system substrate-specific component
D ROI_16330 ABC-type cobalt transport system, permease component CbiQ and related transporters K16785 ecfT; energy-coupling factor transport system permease protein
D ROI_16300 ABC-type cobalt transport system, ATPase component K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D ROI_16320 ABC-type cobalt transport system, ATPase component K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D ROI_04770 ABC-type polysaccharide/polyol phosphate export systems, permease component K09690 wzm; homopolymeric O-antigen transport system permease protein
D ROI_04980 ABC-type polysaccharide/polyol phosphate export systems, permease component K09690 wzm; homopolymeric O-antigen transport system permease protein
D ROI_04990 ABC-type polysaccharide/polyol phosphate transport system, ATPase component K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D ROI_04780 ABC-type polysaccharide/polyol phosphate transport system, ATPase component K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D ROI_04460 ABC-type polysaccharide/polyol phosphate export systems, permease component K09692 tagG; teichoic acid transport system permease protein
D ROI_04470 ABC-type polysaccharide/polyol phosphate transport system, ATPase component K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]
D ROI_08700 ABC-2 type transporter. K09696 natB; sodium transport system permease protein
D ROI_08690 ABC-type multidrug transport system, ATPase component K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D ROI_39470 ABC-type multidrug transport system, ATPase component K20459 nukF; lantibiotic transport system ATP-binding protein
D ROI_39480 Uncharacterized protein conserved in bacteria K20460 nukE; lantibiotic transport system permease protein
D ROI_39490 Uncharacterized protein conserved in bacteria K20461 nukG; lantibiotic transport system permease protein
D ROI_06040 hypothetical protein K20491 nisE; lantibiotic transport system permease protein
D ROI_06050 hypothetical protein K20492 nisG; lantibiotic transport system permease protein
D ROI_06030 ABC-type multidrug transport system, ATPase component K20490 nisF; lantibiotic transport system ATP-binding protein
D ROI_26210 ABC-type transport system involved in multi-copper enzyme maturation, permease component K25151 gldF; gliding motility-associated transport system permease protein
D ROI_34950 Predicted permease. K19084 braE; bacitracin transport system permease protein
D ROI_34940 ABC-type antimicrobial peptide transport system, ATPase component K19083 braD; bacitracin transport system ATP-binding protein
D ROI_11210 hypothetical protein K16919 ytrC_D; acetoin utilization transport system permease protein
D ROI_11200 ABC-type multidrug transport system, ATPase component K16921 ytrB; acetoin utilization transport system ATP-binding protein
D ROI_35670 ABC-type antimicrobial peptide transport system, permease component K24948 yknZ; antimicrobial peptide resistance transport system permease protein
D ROI_35650 ABC-type antimicrobial peptide transport system, ATPase component K24949 yknY; antimicrobial peptide resistance transport system ATP-binding protein [EC:7.6.2.-]
D ROI_30450 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D ROI_30440 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D ROI_14530 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D ROI_17490 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D ROI_02640 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D ROI_26420 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D ROI_02720 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D ROI_17480 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D ROI_03320 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D ROI_14550 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D ROI_01990 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D ROI_09520 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D ROI_11670 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D ROI_11680 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D ROI_12220 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D ROI_12850 ABC-type antimicrobial peptide transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D ROI_17370 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D ROI_15400 Predicted permease. K02004 ABC.CD.P; putative ABC transport system permease protein
D ROI_39200 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D ROI_33190 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D ROI_06240 ABC-type transport system, involved in lipoprotein release, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D ROI_28770 Predicted permease. K02004 ABC.CD.P; putative ABC transport system permease protein
D ROI_06230 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D ROI_09330 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D ROI_09530 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D ROI_11690 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D ROI_12230 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D ROI_37670 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D ROI_15390 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D ROI_39190 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D ROI_33180 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D ROI_13590 ABC-type antimicrobial peptide transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D ROI_03610 ABC-type transport system involved in Fe-S cluster assembly, ATPase component K09013 sufC; Fe-S cluster assembly ATP-binding protein
D ROI_33290 Di-and tricarboxylate transporters K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D ROI_32850 putative efflux protein, MATE family K26939 norM; MATE family, multidrug efflux pump
D ROI_31040 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_40940 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_32960 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_01550 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_29090 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_27650 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_24370 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_11620 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_40790 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_06990 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_12620 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_36930 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_08600 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_17550 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_03400 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_26260 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_33270 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_33360 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_41320 Na+-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D ROI_02110 putative efflux protein, MATE family K26937 dinF; MATE family, multidrug efflux pump
D ROI_03380 Na+-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D ROI_19780 Fucose permease K08174 glcP; MFS transporter, FHS family, glucose/mannose:H+ symporter
D ROI_17020 Major Facilitator Superfamily. K26745 ydiM_N; MFS transporter, AAHS family, multidrug transporter
D ROI_29770 Major Facilitator Superfamily. K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D ROI_40320 Permeases of the major facilitator superfamily K06902 UMF1; MFS transporter, UMF1 family
D ROI_34340 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D ROI_19120 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D ROI_04400 Phosphotransferase System HPr (HPr) Family K02784 ptsH; phosphocarrier protein HPr
D ROI_15500 Phosphotransferase System HPr (HPr) Family K02784 ptsH; phosphocarrier protein HPr
D ROI_19130 Phosphotransferase System HPr (HPr) Family K02784 ptsH; phosphocarrier protein HPr
D ROI_34330 Phosphotransferase System HPr (HPr) Family K02784 ptsH; phosphocarrier protein HPr
D ROI_19160 PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2) K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D ROI_34320 PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4) K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D ROI_40530 MIP family channel proteins K02440 glpF; glycerol uptake facilitator
D ROI_30130 ammonium transporter K03320 amt; ammonium transporter, Amt family
D ROI_07040 Large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D ROI_13170 Small-conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel
D ROI_27760 Mg2+ transporter (mgtE) K06213 mgtE; magnesium transporter
D ROI_15420 Mg2+ and Co2+ transporters K03284 corA; magnesium transporter
D ROI_13900 Mg2+ and Co2+ transporters K03284 corA; magnesium transporter
D ROI_03980 Putative effector of murein hydrolase LrgA K06518 cidA; holin-like protein
D ROI_26960 sugar (Glycoside-Pentoside-Hexuronide) transporter K11104 melB; melibiose permease
D ROI_40450 K+-dependent Na+/Ca+ exchanger related-protein K07301 yrbG; cation:H+ antiporter
D ROI_22650 SSS sodium solute transporter superfamily K11928 putP; sodium/proline symporter
D ROI_03820 sodium--glutamate symport carrier (gltS) K03312 gltS; glutamate:Na+ symporter, ESS family
D ROI_20110 transporter, NhaC family (TC 2.A.35) K18218 tet35; tetracycline resistance efflux pump
D ROI_07930 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein
D ROI_13920 Trk-type K+ transport systems, membrane components K03498 trkH; trk/ktr system potassium uptake protein
D ROI_07920 K+ transport systems, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein
D ROI_13930 K+ transport systems, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein
D ROI_17180 uracil-xanthine permease K02824 uraA; uracil permease
D ROI_26780 Chloride channel protein EriC K03281 clcA; chloride channel protein, CIC family
D ROI_02160 high affinity sulphate transporter 1 K03321 TC.SULP; sulfate permease, SulP family
D ROI_15180 Sulfate permease and related transporters (MFS superfamily) K03321 TC.SULP; sulfate permease, SulP family
D ROI_17050 TRAP-type C4-dicarboxylate transport system, small permease component K21394 yiaM; TRAP-type transport system small permease protein
D ROI_40400 Na/Pi-cotransporter K03324 yjbB; phosphate:Na+ symporter
D ROI_21320 Na/Pi-cotransporter K03324 yjbB; phosphate:Na+ symporter
D ROI_22800 Uncharacterized membrane protein, putative virulence factor K06409 spoVB; stage V sporulation protein B
D ROI_35400 Predicted permeases K24180 mleP; malate permease and related proteins
D ROI_00650 Predicted branched-chain amino acid permease (azaleucine resistance) K26605 azlC; branched chain amino acid efflux pump
D ROI_00660 Predicted branched-chain amino acid permeases (azaleucine resistance) K26606 azlD; branched chain amino acid efflux pump
D ROI_17230 Predicted membrane protein K23675 fmnP; riboflavin transporter
D ROI_27670 Protein of unknown function (DUF1393). K23675 fmnP; riboflavin transporter
D ROI_01410 probable proton-coupled thiamine transporter YuaJ K16789 thiT; thiamine transporter
D ROI_26020 Bacterial cell division membrane protein K03588 ftsW; cell division protein FtsW
D ROI_16190 Predicted membrane protein K23242 mntP; manganese efflux pump family protein
D ROI_40440 Predicted membrane protein K23242 mntP; manganese efflux pump family protein
D ROI_21890 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D ROI_21900 Pyruvate/oxaloacetate carboxyltransferase K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D ROI_21860 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3]
D ROI_21880 Biotin carboxyl carrier protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D ROI_21870 sodium pump decarboxylases, gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
D ROI_35640 Membrane-fusion protein K24950 yknX; membrane fusion protein, antimicrobial resistance system
D ROI_20330 Fe2+ transport system protein A K04758 feoA; ferrous iron transport protein A
D ROI_20340 Fe2+ transport system protein A K04758 feoA; ferrous iron transport protein A
D ROI_19010 ferrous iron transporter FeoB K04759 feoB; ferrous iron transport protein B
D ROI_20350 ferrous iron transporter FeoB K04759 feoB; ferrous iron transport protein B
D ROI_19320 TspO/MBR family. K05770 TSPO; translocator protein
D ROI_06340 Uncharacterized membrane protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:rim02044]
D ROI_34810 Type IV leader peptidase family. K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D ROI_34720 Type IV leader peptidase family. K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D ROI_34740 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D ROI_12720 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D ROI_39530 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D ROI_34750 hypothetical protein K12510 tadB; tight adherence protein B
D ROI_34760 Bacterial type II secretion system protein F domain. K12511 tadC; tight adherence protein C
D ROI_17960 competence protein ComEA helix-hairpin-helix repeat region K02237 comEA; competence protein ComEA
D ROI_34070 Deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D ROI_10190 Predicted hydrolase (metallo-beta-lactamase superfamily) K02238 comEC; competence protein ComEC
D ROI_21130 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D ROI_11150 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB K04061 flhB2; flagellar biosynthesis protein
D ROI_20890 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) K02409 fliF; flagellar M-ring protein FliF
D ROI_20920 Flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH
D ROI_20930 type III secretion system ATPase, FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D ROI_21060 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D ROI_21080 Flagellar biosynthesis protein, FliO. K02418 fliO; flagellar protein FliO/FliZ
D ROI_21090 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D ROI_21100 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D ROI_21110 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D ROI_29570 Type IV secretory pathway, VirD4 components K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D ROI_14850 Type IV secretory pathway, VirD4 components K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D ROI_31200 Type IV secretory pathway, VirD4 components K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D ROI_31270 Domain of unknown function DUF87. K12053 comB4; ComB4 competence protein
D ROI_04150 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D ROI_00780 protein translocase subunit secF/protein translocase subunit secD K12257 secDF; SecD/SecF fusion protein
D ROI_07550 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE
D ROI_14150 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D ROI_10590 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D ROI_10550 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D ROI_13020 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
C 02042 Bacterial toxins [BR:rim02042]
D ROI_00720 channel protein, hemolysin III family K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:rim02022]
D ROI_40420 Signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D ROI_40410 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D ROI_12240 Signal transduction histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D ROI_03450 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain. K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D ROI_10070 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07775 resD; two-component system, OmpR family, response regulator ResD
D ROI_22160 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07775 resD; two-component system, OmpR family, response regulator ResD
D ROI_34920 hypothetical protein K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D ROI_11640 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3]
D ROI_10080 Signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D ROI_14520 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./HAMP domain. K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D ROI_06070 Signal transduction histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D ROI_14960 Signal transduction histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D ROI_06060 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D ROI_14500 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D ROI_27140 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 K02483; two-component system, OmpR family, response regulator
D ROI_32570 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase. K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D ROI_28780 Signal transduction histidine kinase K14988 salK; two-component system, NarL family, secretion system sensor histidine kinase SalK
D ROI_25010 sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D ROI_21180 Chemotaxis protein histidine kinase and related kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D ROI_22130 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ROI_21070 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ROI_21170 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D ROI_10100 Chemotaxis signal transduction protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D ROI_06510 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase. K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D ROI_24730 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain. K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D ROI_11780 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain. K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D ROI_37800 Predicted signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D ROI_20230 Predicted signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D ROI_36050 Predicted signal transduction protein with a C-terminal ATPase domain K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D ROI_06520 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D ROI_11770 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D ROI_27280 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D ROI_37810 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D ROI_20240 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D ROI_36040 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D ROI_08810 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 yesN; two-component system, response regulator YesN
D ROI_19760 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
C 02035 Bacterial motility proteins [BR:rim02035]
D ROI_21180 Chemotaxis protein histidine kinase and related kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D ROI_21190 Chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D ROI_21520 Chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D ROI_21200 Chemotaxis protein CheC, inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC
D ROI_21210 Chemotaxis protein; stimulates methylation of MCP proteins K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D ROI_21980 Methylase of chemotaxis methyl-accepting proteins K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D ROI_21170 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D ROI_22130 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ROI_21070 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D ROI_10100 Chemotaxis signal transduction protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D ROI_36140 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_38490 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_40700 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_35600 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_39830 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_16470 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_26300 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_06730 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_06790 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_26590 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_07740 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_21530 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_22090 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_32730 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_13500 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_03760 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_13820 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_33780 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_33850 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D ROI_20920 Flagellar biosynthesis/type III secretory pathway protein K02411 fliH; flagellar assembly protein FliH
D ROI_20930 type III secretion system ATPase, FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D ROI_20940 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D ROI_21080 Flagellar biosynthesis protein, FliO. K02418 fliO; flagellar protein FliO/FliZ
D ROI_21090 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D ROI_21100 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D ROI_21110 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D ROI_21130 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D ROI_20900 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D ROI_21050 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D ROI_21060 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D ROI_20890 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) K02409 fliF; flagellar M-ring protein FliF
D ROI_20880 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D ROI_20960 Flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D ROI_20860 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D ROI_20870 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D ROI_20970 Flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D ROI_04250 fagellar hook-basal body proteins K02391 flgF; flagellar basal-body rod protein FlgF
D ROI_04260 fagellar hook-basal body proteins K02392 flgG; flagellar basal-body rod protein FlgG
D ROI_04270 hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D ROI_21000 fagellar hook-basal body proteins K02390 flgE; flagellar hook protein FlgE
D ROI_07090 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D ROI_07100 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D ROI_07110 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D ROI_28360 hypothetical protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-]
D ROI_12640 hypothetical protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-]
D ROI_41050 hypothetical protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-]
D ROI_07180 Flagellin and related hook-associated proteins K02406 fliC; flagellin
D ROI_34680 Flagellin and related hook-associated proteins K02406 fliC; flagellin
D ROI_41040 Flagellin and related hook-associated proteins K02406 fliC; flagellin
D ROI_07450 Flagellin and related hook-associated proteins K02406 fliC; flagellin
D ROI_07150 Flagellar capping protein K02407 fliD; flagellar hook-associated protein 2
D ROI_07530 hypothetical protein K02407 fliD; flagellar hook-associated protein 2
D ROI_07160 flagellar biosynthetic protein FliS K02422 fliS; flagellar secretion chaperone FliS
D ROI_21230 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D ROI_01220 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain K02424 tcyA; L-cystine transport system substrate-binding protein
D ROI_07120 Uncharacterized protein conserved in bacteria K13626 fliW; flagellar assembly factor FliW
D ROI_07070 Anti-sigma-28 factor, FlgM. K02398 flgM; negative regulator of flagellin synthesis FlgM
D ROI_07140 Uncharacterized flagellar protein FlaG K06603 flaG; flagellar protein FlaG
D ROI_21010 Uncharacterized protein, possibly involved in motility K02385 flbD; flagellar protein FlbD
D ROI_21140 flagellar biosynthetic protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D ROI_21150 ATPases involved in chromosome partitioning K04562 flhG; flagellar biosynthesis protein FlhG
D ROI_34810 Type IV leader peptidase family. K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D ROI_34720 Type IV leader peptidase family. K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D ROI_34740 Flp pilus assembly protein, ATPase CpaF K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D ROI_12720 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D ROI_39530 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:rim04812]
D ROI_04240 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D ROI_22910 Actin-like ATPase involved in cell morphogenesis K03569 mreB; rod shape-determining protein MreB and related proteins
D ROI_29380 plasmid segregation actin-type ATPase ParM K18640 parM; plasmid segregation protein ParM
D ROI_31060 plasmid segregation actin-type ATPase ParM K18640 parM; plasmid segregation protein ParM
D ROI_24870 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D ROI_24860 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D ROI_22950 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D ROI_24850 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D ROI_22960 Septum formation topological specificity factor MinE. K03608 minE; cell division topological specificity factor
D ROI_32590 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D ROI_09210 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D ROI_14650 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D ROI_18120 CobQ/CobB/MinD/ParA nucleotide binding domain. K03496 parA; chromosome partitioning protein
D ROI_32600 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ROI_32770 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ROI_09220 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ROI_12510 Predicted transcriptional regulators K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:rim04147]
D ROI_19430 Molecular chaperone, HSP90 family K04079 HSP90A; molecular chaperone HtpG
D ROI_15370 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ROI_38650 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ROI_38900 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D ROI_38910 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D ROI_29080 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D ROI_08930 Zn-dependent dipeptidase, microsomal dipeptidase homolog K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D ROI_20620 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ROI_13290 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D ROI_06920 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D ROI_12930 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D ROI_13710 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D ROI_34860 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D ROI_01790 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D ROI_25220 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D ROI_30650 acetyl-CoA acetyltransferases K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ROI_14170 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D ROI_24580 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D ROI_17880 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D ROI_24740 Alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D ROI_38010 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D ROI_34590 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D ROI_40520 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D ROI_30090 Uncharacterized protein related to glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ROI_12950 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ROI_13150 Phosphoglycerate dehydrogenase and related dehydrogenases K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D ROI_10450 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D ROI_30690 Electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D ROI_38920 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D ROI_32090 Fructose-2,6-bisphosphatase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:rim02048]
D ROI_35340 CRISPR-associated protein, Cas2 family K09951 cas2; CRISPR-associated protein Cas2
D ROI_35310 CRISPR-associated endonuclease, Csn1 family K09952 csn1; CRISPR-associated endonuclease Csn1 [EC:3.1.-.-]
D ROI_03100 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D ROI_03080 Type I restriction modification DNA specificity domain. K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D ROI_03050 Type I restriction-modification system methyltransferase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D ROI_34380 Predicted O-methyltransferase K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D ROI_02060 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ROI_11980 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ROI_31930 Site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ROI_15010 Growth inhibitor K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D ROI_22530 Growth inhibitor K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D ROI_31740 Growth inhibitor K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D ROI_12100 addiction module antitoxin, RelB/DinJ family K07473 dinJ; DNA-damage-inducible protein J
D ROI_28030 Plasmid stabilization system protein K19092 parE1_3_4; toxin ParE1/3/4
D ROI_31250 Plasmid stabilization system protein K19092 parE1_3_4; toxin ParE1/3/4
D ROI_02030 Plasmid stabilization system protein K19092 parE1_3_4; toxin ParE1/3/4
D ROI_41310 death-on-curing family protein K07341 doc; death on curing protein
D ROI_41300 Phd_YefM. K19165 phd; antitoxin Phd
D ROI_04240 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D ROI_22910 Actin-like ATPase involved in cell morphogenesis K03569 mreB; rod shape-determining protein MreB and related proteins
D ROI_14300 hypothetical protein K19167 abiQ; protein AbiQ
D ROI_02260 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ROI_19050 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ROI_10840 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:rim01504]
D ROI_20110 transporter, NhaC family (TC 2.A.35) K18218 tet35; tetracycline resistance efflux pump
D ROI_27740 small GTP-binding protein domain K18220 tetM; ribosomal protection tetracycline resistance protein
D ROI_29770 Major Facilitator Superfamily. K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D ROI_19550 Erythromycin esterase homolog K06880 ereA_B; erythromycin esterase [EC:3.1.1.-]
D ROI_08310 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component K02172 blaR1; bla regulator protein blaR1
D ROI_08300 Predicted transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D ROI_10080 Signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D ROI_28470 Transcriptional regulators K18909 mepR; MarR family transcriptional regulator, repressor for mepA
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:rim00537]
D ROI_08930 Zn-dependent dipeptidase, microsomal dipeptidase homolog K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:rim03100]
D ROI_T_41880 ROI_T_41880 K14219 tRNA-Arg; tRNA Arg
D ROI_T_41530 ROI_T_41530 K14219 tRNA-Arg; tRNA Arg
D ROI_T_41720 ROI_T_41720 K14219 tRNA-Arg; tRNA Arg
D ROI_T_41700 ROI_T_41700 K14219 tRNA-Arg; tRNA Arg
D ROI_T_41770 ROI_T_41770 K14220 tRNA-Asn; tRNA Asn
D ROI_T_41430 ROI_T_41430 K14221 tRNA-Asp; tRNA Asp
D ROI_T_41790 ROI_T_41790 K14222 tRNA-Cys; tRNA Cys
D ROI_T_41800 ROI_T_41800 K14222 tRNA-Cys; tRNA Cys
D ROI_T_41690 ROI_T_41690 K14223 tRNA-Gln; tRNA Gln
D ROI_T_41550 ROI_T_41550 K14223 tRNA-Gln; tRNA Gln
D ROI_T_41660 ROI_T_41660 K14224 tRNA-Glu; tRNA Glu
D ROI_T_41680 ROI_T_41680 K14224 tRNA-Glu; tRNA Glu
D ROI_T_41670 ROI_T_41670 K14224 tRNA-Glu; tRNA Glu
D ROI_T_41780 ROI_T_41780 K14224 tRNA-Glu; tRNA Glu
D ROI_T_41520 ROI_T_41520 K14225 tRNA-Gly; tRNA Gly
D ROI_T_41930 ROI_T_41930 K14225 tRNA-Gly; tRNA Gly
D ROI_T_41820 ROI_T_41820 K14225 tRNA-Gly; tRNA Gly
D ROI_T_41830 ROI_T_41830 K14225 tRNA-Gly; tRNA Gly
D ROI_T_41840 ROI_T_41840 K14225 tRNA-Gly; tRNA Gly
D ROI_T_41910 ROI_T_41910 K14225 tRNA-Gly; tRNA Gly
D ROI_T_41540 ROI_T_41540 K14226 tRNA-His; tRNA His
D ROI_T_41760 ROI_T_41760 K14228 tRNA-Leu; tRNA Leu
D ROI_T_41630 ROI_T_41630 K14228 tRNA-Leu; tRNA Leu
D ROI_T_41570 ROI_T_41570 K14228 tRNA-Leu; tRNA Leu
D ROI_T_41860 ROI_T_41860 K14228 tRNA-Leu; tRNA Leu
D ROI_T_41870 ROI_T_41870 K14228 tRNA-Leu; tRNA Leu
D ROI_T_41710 ROI_T_41710 K14229 tRNA-Lys; tRNA Lys
D ROI_T_41730 ROI_T_41730 K14229 tRNA-Lys; tRNA Lys
D ROI_T_41560 ROI_T_41560 K14229 tRNA-Lys; tRNA Lys
D ROI_T_41490 ROI_T_41490 K14229 tRNA-Lys; tRNA Lys
D ROI_T_41590 ROI_T_41590 K14230 tRNA-Met; tRNA Met
D ROI_T_41500 ROI_T_41500 K14230 tRNA-Met; tRNA Met
D ROI_T_41740 ROI_T_41740 K14230 tRNA-Met; tRNA Met
D ROI_T_41470 ROI_T_41470 K14230 tRNA-Met; tRNA Met
D ROI_T_41480 ROI_T_41480 K14231 tRNA-Phe; tRNA Phe
D ROI_T_41920 ROI_T_41920 K14231 tRNA-Phe; tRNA Phe
D ROI_T_41810 ROI_T_41810 K14232 tRNA-Pro; tRNA Pro
D ROI_T_41510 ROI_T_41510 K14232 tRNA-Pro; tRNA Pro
D ROI_T_41610 ROI_T_41610 K14232 tRNA-Pro; tRNA Pro
D ROI_T_41850 ROI_T_41850 K14233 tRNA-Ser; tRNA Ser
D ROI_T_41900 ROI_T_41900 K14233 tRNA-Ser; tRNA Ser
D ROI_T_41640 ROI_T_41640 K14233 tRNA-Ser; tRNA Ser
D ROI_T_41650 ROI_T_41650 K14233 tRNA-Ser; tRNA Ser
D ROI_T_41450 ROI_T_41450 K14234 tRNA-Thr; tRNA Thr
D ROI_T_41890 ROI_T_41890 K14234 tRNA-Thr; tRNA Thr
D ROI_T_41600 ROI_T_41600 K14234 tRNA-Thr; tRNA Thr
D ROI_T_41750 ROI_T_41750 K14235 tRNA-Trp; tRNA Trp
D ROI_T_41460 ROI_T_41460 K14236 tRNA-Tyr; tRNA Tyr
D ROI_T_41620 ROI_T_41620 K14236 tRNA-Tyr; tRNA Tyr
D ROI_T_41440 ROI_T_41440 K14237 tRNA-Val; tRNA Val
D ROI_T_41580 ROI_T_41580 K14237 tRNA-Val; tRNA Val
D ROI_R_41950 16S; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ROI_R_41940 23S; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ROI_41990 Bacterial signal recognition particle RNA K01983 ffs; SRP RNA
D ROI_41960 Bacterial RNase P class A K01978 rnpB; M1 RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D ROI_24000 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D ROI_15880 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D ROI_19420 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family K19955 adh2; alcohol dehydrogenase [EC:1.1.1.-]
D ROI_22700 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D ROI_13440 carboxynorspermidine dehydrogenase K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55]
D ROI_26460 sulfide dehydrogenase (flavoprotein) subunit SudB K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D ROI_28380 anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D ROI_16670 pyruvate formate-lyase 1-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D ROI_00900 Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D ROI_07650 Predicted N6-adenine-specific DNA methylase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-]
D ROI_11370 Acetyltransferase (GNAT) family. K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D ROI_13890 Sortase and related acyltransferases K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-]
D ROI_24320 conserved hypothetical protein TIGR02336 K15533 K15533; 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase [EC:2.4.1.211]
D ROI_37010 Trehalose and maltose hydrolases (possible phosphorylases) K10231 kojP; kojibiose phosphorylase [EC:2.4.1.230]
D ROI_36340 Predicted glycosylase K16212 mgp; 4-O-beta-D-mannosyl-D-glucose phosphorylase [EC:2.4.1.281]
D ROI_36350 Predicted glycosylase K18785 mp2; beta-1,4-mannooligosaccharide/beta-1,4-mannosyl-N-acetylglucosamine phosphorylase [EC:2.4.1.319 2.4.1.320]
D ROI_27020 NCAIR mutase (PurE)-related proteins K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D ROI_33510 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D ROI_30740 Membrane-associated lipoprotein involved in thiamine biosynthesis K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D ROI_24250 Membrane-associated lipoprotein involved in thiamine biosynthesis K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D ROI_35870 Uncharacterized conserved protein K23753 ppk2; AMP-polyphosphate phosphotransferase [EC:2.7.4.33]
D ROI_00260 Retron-type reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D ROI_29260 anti-sigma F factor K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1]
D ROI_30010 Hpr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D ROI_05870 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D ROI_32940 Predicted esterase K03930 estA; putative tributyrin esterase [EC:3.1.1.-]
D ROI_32950 Predicted esterase K03930 estA; putative tributyrin esterase [EC:3.1.1.-]
D ROI_28450 Thioesterase superfamily K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29]
D ROI_10350 conserved hypothetical protein TIGR00051 K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D ROI_15900 Stage II sporulation protein E (SpoIIE). K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16]
D ROI_21510 Predicted metal-dependent phosphoesterases (PHP family) K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D ROI_27950 HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 K07015 yqeG; putative phosphatase [EC:3.1.3.-]
D ROI_33960 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59]
D ROI_02320 Response regulator containing a CheY-like receiver domain and an HD-GYP domain K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D ROI_40050 Alkyl sulfatase and related hydrolases K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21]
D ROI_40660 Mg-dependent DNase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D ROI_37990 Arabinogalactan endo-1,4-beta-galactosidase K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89]
D ROI_33860 Arabinogalactan endo-1,4-beta-galactosidase K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89]
D ROI_16580 Beta-xylosidase K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99]
D ROI_37850 Endoglucanase Y K15531 rexA; oligosaccharide reducing-end xylanase [EC:3.2.1.156]
D ROI_23800 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins K15532 yteR; unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172]
D ROI_27270 Alpha-glucosidases, family 31 of glycosyl hydrolases K01811 xylS; alpha-D-xyloside xylohydrolase [EC:3.2.1.177]
D ROI_19270 Alpha-glucosidases, family 31 of glycosyl hydrolases K01811 xylS; alpha-D-xyloside xylohydrolase [EC:3.2.1.177]
D ROI_09920 Glycosyl Hydrolase Family 88. K18581 ugl; unsaturated chondroitin disaccharide hydrolase [EC:3.2.1.180]
D ROI_12140 Protein of unknown function (DUF2961). K27494 exoMA1; D-arabinan exo alpha-(1,3)/(1,5)-arabinofuranosidase (non-reducing end) [EC:3.2.1.225]
D ROI_36590 Negative regulator of beta-lactamase expression K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D ROI_28340 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D ROI_28140 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D ROI_19020 Predicted xylanase/chitin deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D ROI_21340 Predicted xylanase/chitin deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D ROI_12890 delta-lactam-biosynthetic de-N-acetylase K01567 pdaA; peptidoglycan-N-acetylmuramic acid deacetylase [EC:3.5.1.-]
D ROI_30330 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D ROI_34050 Protein-tyrosine-phosphatase K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2]
D ROI_16920 Myosin-crossreactive antigen K10254 ohyA; oleate hydratase [EC:4.2.1.53]
D ROI_22510 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D ROI_27030 conserved hypothetical protein TIGR00299 K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12]
D ROI_36330 N-acyl-D-glucosamine 2-epimerase K16213 cbe; cellobiose epimerase [EC:5.1.3.11]
D ROI_01750 acetyl-CoA carboxylase carboxyltransferase subunit alpha K04104 accD3; acyl-CoA carboxylase subunit beta [EC:6.4.1.-]
D ROI_22010 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D ROI_22070 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D ROI_16050 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D ROI_15290 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D ROI_20500 heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D ROI_26440 ATPase, P-type (transporting), HAD superfamily, subfamily IC K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]
C 99981 Carbohydrate metabolism
D ROI_30060 Phosphotransferase System HPr (HPr) Family K11184 chr; catabolite repression HPr-like protein
C 99982 Energy metabolism
D ROI_22040 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D ROI_22050 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D ROI_22060 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D ROI_02270 FeS cluster assembly scaffold protein NifU, Clostridium type K04488 iscU; nitrogen fixation protein NifU and related proteins
D ROI_30680 Electron transfer flavoprotein, beta subunit K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
D ROI_16700 EDD domain protein, DegV family K25232 fakB; fatty acid kinase fatty acid binding subunit
D ROI_26270 EDD domain protein, DegV family K25232 fakB; fatty acid kinase fatty acid binding subunit
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D ROI_23030 pyridoxal phosphate enzyme, YggS family K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D ROI_05520 Uncharacterised protein family (UPF0104). K07027 K07027; glycosyltransferase 2 family protein
D ROI_25740 conserved hypothetical protein K07027 K07027; glycosyltransferase 2 family protein
D ROI_20030 Cell Wall Hydrolase. K01449 cwlJ; cell wall hydrolase
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D ROI_38540 cold-shock DNA-binding protein family K03704 cspA; cold shock protein
D ROI_13180 cold-shock DNA-binding protein family K03704 cspA; cold shock protein
D ROI_33680 nitrogen regulatory protein P-II K02589 nifHD1; nitrogen regulatory protein PII 1
D ROI_33690 Nitrogen regulatory protein PII K02590 nifHD2; nitrogen regulatory protein PII 2
D ROI_17220 Transcriptional accessory protein K06959 tex; protein Tex
D ROI_23600 Uncharacterized protein conserved in bacteria K09777 remA; extracellular matrix regulatory protein A
C 99974 Translation
D ROI_25970 Predicted exonuclease of the beta-lactamase fold involved in RNA processing K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D ROI_29020 trigger factor K03545 tig; trigger factor
D ROI_00700 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) K03545 tig; trigger factor
D ROI_38690 SsrA-binding protein K03664 smpB; SsrA-binding protein
D ROI_16260 Hydrogenase maturation factor K04655 hypE; hydrogenase expression/formation protein HypE
D ROI_02520 selenium-dependent molybdenum hydroxylase system protein, YqeB family K07402 xdhC; xanthine dehydrogenase accessory factor
D ROI_02560 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family K07402 xdhC; xanthine dehydrogenase accessory factor
D ROI_34660 Negative regulator of genetic competence, sporulation and motility K16511 mecA1_2; adapter protein MecA 1/2
D ROI_35750 Negative regulator of genetic competence, sporulation and motility K16511 mecA1_2; adapter protein MecA 1/2
C 99976 Replication and repair
D ROI_02170 O-6-methylguanine DNA methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D ROI_29470 DNA repair proteins K03630 radC; DNA repair protein RadC
D ROI_22900 DNA replication and repair protein RadC K03630 radC; DNA repair protein RadC
D ROI_32120 Predicted ATP-dependent endonuclease of the OLD family K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D ROI_11490 Putative phage replication protein RstA K07467 nicK; putative DNA relaxase
D ROI_08480 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 ycaJ; putative ATPase
D ROI_28840 phage/plasmid primase, P4 family, C-terminal domain K06919 K06919; putative DNA primase/helicase
D ROI_05280 Transposase and inactivated derivatives K07484 K07484; transposase
D ROI_05290 Transposase and inactivated derivatives K07484 K07484; transposase
D ROI_05800 Transposase and inactivated derivatives K07486 K07486; transposase
D ROI_39410 Transposase and inactivated derivatives K07491 rayT; REP-associated tyrosine transposase
D ROI_18750 Transposase and inactivated derivatives K07491 rayT; REP-associated tyrosine transposase
D ROI_36490 Mu transposase, C-terminal./Bacteriophage Mu transposase. K07497 K07497; putative transposase
D ROI_39270 Site-specific recombinase XerD K14059 int; integrase
D ROI_09750 Site-specific recombinase XerD K14059 int; integrase
D ROI_03190 Site-specific recombinase XerD K14059 int; integrase
C 99979 Viral proteins
C 99998 Others
D ROI_41000 conserved hypothetical protein TIGR00103 K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D ROI_06160 sugar (Glycoside-Pentoside-Hexuronide) transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D ROI_09860 sugar (Glycoside-Pentoside-Hexuronide) transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D ROI_41140 sugar (Glycoside-Pentoside-Hexuronide) transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D ROI_31490 sugar (Glycoside-Pentoside-Hexuronide) transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D ROI_04030 sugar (Glycoside-Pentoside-Hexuronide) transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D ROI_07420 Choline-glycine betaine transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family
D ROI_17530 Na+-dependent transporters of the SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D ROI_06750 Na+-dependent transporters of the SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D ROI_16590 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D ROI_38430 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D ROI_06740 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
C 99978 Cell growth
D ROI_07190 hypothetical protein K06320 cgeB; spore maturation protein CgeB
D ROI_07200 hypothetical protein K06320 cgeB; spore maturation protein CgeB
D ROI_07210 hypothetical protein K06320 cgeB; spore maturation protein CgeB
D ROI_07280 hypothetical protein K06320 cgeB; spore maturation protein CgeB
D ROI_07440 hypothetical protein K06320 cgeB; spore maturation protein CgeB
D ROI_07520 Uncharacterized protein conserved in bacteria K06320 cgeB; spore maturation protein CgeB
D ROI_20690 hypothetical protein K06333 cotJB; spore coat protein JB
D ROI_20680 Mn-containing catalase K06334 cotJC; spore coat protein JC
D ROI_32520 Predicted RNA-binding protein K06346 jag; spoIIIJ-associated protein
D ROI_33750 Uncharacterized membrane protein, required for spore maturation in B.subtilis. K06373 spmA; spore maturation protein A
D ROI_29250 anti-anti-sigma factor K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist)
D ROI_18040 stage II sporulation protein P K06385 spoIIP; stage II sporulation protein P
D ROI_08560 stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R
D ROI_25550 stage III sporulation protein AA K06390 spoIIIAA; stage III sporulation protein AA
D ROI_25520 stage III sporulation protein AC K06392 spoIIIAC; stage III sporulation protein AC
D ROI_25510 Stage III sporulation protein AC/AD protein family. K06393 spoIIIAD; stage III sporulation protein AD
D ROI_25500 Stage III sporulation protein AE (spore_III_AE). K06394 spoIIIAE; stage III sporulation protein AE
D ROI_25480 hypothetical protein K06396 spoIIIAG; stage III sporulation protein AG
D ROI_26690 stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A
D ROI_14610 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_15030 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_27540 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_18950 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_18960 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_18970 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_09510 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_09710 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_00300 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_00310 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_00320 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_31760 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_12170 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_31770 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_31780 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_02980 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_03000 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_13600 Site-specific recombinases, DNA invertase Pin homologs K06400 spoIVCA; site-specific DNA recombinase
D ROI_02990 Recombinase. K06400 spoIVCA; site-specific DNA recombinase
D ROI_37450 Stage V sporulation protein AA. K06403 spoVAA; stage V sporulation protein AA
D ROI_37460 hypothetical protein K06404 spoVAB; stage V sporulation protein AB
D ROI_37520 SpoVA protein. K06405 spoVAC; stage V sporulation protein AC
D ROI_35540 stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE
D ROI_04120 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. K06410 spoVFA; dipicolinate synthase subunit A
D ROI_04130 dipicolinic acid synthetase, B subunit K06411 spoVFB; dipicolinate synthase subunit B
D ROI_15590 Uncharacterized protein, involved in the regulation of septum location K06412 spoVG; stage V sporulation protein G
D ROI_23810 Small, acid-soluble spore proteins, alpha/beta type. K06421 sspD; small acid-soluble spore protein D (minor alpha/beta-type SASP)
D ROI_22750 Putative stage IV sporulation protein YqfD. K06438 yqfD; similar to stage IV sporulation protein
D ROI_17990 Sporulation and spore germination. K06298 gerM; germination protein M
D ROI_08530 Bacillus/Clostridium GerA spore germination protein. K06310 yndD; spore germination protein
C 99993 Cell motility
C 99995 Signaling proteins
D ROI_15270 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 K05795 terD; tellurium resistance protein TerD
D ROI_15320 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 K05795 terD; tellurium resistance protein TerD
D ROI_30400 Carbon starvation protein, predicted membrane protein K06200 cstA; carbon starvation protein
D ROI_13360 GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
D ROI_10410 ACT domain-containing protein K07166 K07166; ACT domain-containing protein
D ROI_22770 Phosphate starvation-inducible protein PhoH, predicted ATPase K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D ROI_38330 Predicted ATPase related to phosphate starvation-inducible protein PhoH K07175 phoH2; PhoH-like ATPase
C 99992 Structural proteins
D ROI_37640 RND family efflux transporter, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D ROI_12830 RND family efflux transporter, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
C 99994 Others
D ROI_40390 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein
D ROI_26500 hemerythrin-like metal-binding domain K07216 hr; hemerythrin
D ROI_01810 hypothetical protein K26996 sdpI; immunity protein, SdpI family
D ROI_20170 hypothetical protein K26996 sdpI; immunity protein, SdpI family
B
B 09194 Poorly characterized
C 99996 General function prediction only
D ROI_05880 EMAP domain K06878 K06878; tRNA-binding protein
D ROI_34960 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED K07025 K07025; putative hydrolase of the HAD superfamily
D ROI_26230 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED K07025 K07025; putative hydrolase of the HAD superfamily
D ROI_29280 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E K07025 K07025; putative hydrolase of the HAD superfamily
D ROI_22250 Predicted membrane protein K07058 K07058; membrane protein
D ROI_37350 Uncharacterized conserved protein K03744 lemA; LemA protein
D ROI_16180 X-X-X-Leu-X-X-Gly heptad repeats K01421 yhgE; putative membrane protein
D ROI_24420 YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain K01421 yhgE; putative membrane protein
D ROI_24440 YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain K01421 yhgE; putative membrane protein
D ROI_21330 Predicted membrane protein K08974 K08974; putative membrane protein
D ROI_26510 CobW/HypB/UreG, nucleotide-binding domain. K08986 ycgQ; putative membrane protein
C 99997 Function unknown
D ROI_29870 Arylsulfatase regulator (Fe-S oxidoreductase) K06871 K06871; uncharacterized protein
D ROI_13060 Arylsulfatase regulator (Fe-S oxidoreductase) K06871 K06871; uncharacterized protein
D ROI_30540 Beta-propeller domains of methanol dehydrogenase type K06872 K06872; uncharacterized protein
D ROI_05720 Acetyl xylan esterase (AXE1). K06889 K06889; uncharacterized protein
D ROI_20560 Serine hydrolase (FSH1). K06889 K06889; uncharacterized protein
D ROI_11530 hypothetical protein K06889 K06889; uncharacterized protein
D ROI_24560 Predicted ATPase (AAA+ superfamily) K06921 K06921; uncharacterized protein
D ROI_21470 Predicted ATPase (AAA+ superfamily) K06923 K06923; uncharacterized protein
D ROI_03970 Uncharacterised protein family (UPF0153). K06940 K06940; uncharacterized protein
D ROI_28500 Predicted HD superfamily hydrolase K06950 K06950; uncharacterized protein
D ROI_10620 RNA-binding protein (KH domain) K06960 K06960; uncharacterized protein
D ROI_28120 Predicted Zn-dependent protease K06973 K06973; uncharacterized protein
D ROI_24630 Predicted flavin-nucleotide-binding protein K07005 K07005; uncharacterized protein
D ROI_37290 Predicted membrane protein, putative toxin regulator K07035 K07035; uncharacterized protein
D ROI_26150 Predicted metal-binding protein related to the C-terminal domain of SecA K07039 K07039; uncharacterized protein
D ROI_07910 Predicted oxidoreductases of the aldo/keto reductase family K07079 K07079; uncharacterized protein
D ROI_35470 Predicted oxidoreductases of the aldo/keto reductase family K07079 K07079; uncharacterized protein
D ROI_06590 Predicted oxidoreductases of the aldo/keto reductase family K07079 K07079; uncharacterized protein
D ROI_19670 Predicted permeases K07090 K07090; uncharacterized protein
D ROI_16640 phosphoesterase, MJ0936 family K07095 K07095; uncharacterized protein
D ROI_07690 phosphoesterase, MJ0936 family K07095 K07095; uncharacterized protein
D ROI_12210 Predicted phosphohydrolases K07098 K07098; uncharacterized protein
D ROI_28730 Predicted phosphohydrolases K07098 K07098; uncharacterized protein
D ROI_23640 Predicted small molecule binding protein (contains 3H domain) K07105 K07105; uncharacterized protein
D ROI_20460 Short-chain dehydrogenases of various substrate specificities K07124 K07124; uncharacterized protein
D ROI_06110 Predicted ATPase (AAA+ superfamily) K07133 K07133; uncharacterized protein
D ROI_36390 Predicted ATPase (AAA+ superfamily) K07133 K07133; uncharacterized protein
D ROI_27330 Predicted ATPase (AAA+ superfamily) K07133 K07133; uncharacterized protein
D ROI_33140 Predicted ATPase (AAA+ superfamily) K07133 K07133; uncharacterized protein
D ROI_34020 Predicted ATPase (AAA+ superfamily) K07133 K07133; uncharacterized protein
D ROI_12600 Uncharacterized FAD-dependent dehydrogenases K07137 K07137; uncharacterized protein
D ROI_22830 Uncharacterized FAD-dependent dehydrogenases K07137 K07137; uncharacterized protein
D ROI_11890 radical SAM protein, TIGR01212 family K07139 K07139; uncharacterized protein
D ROI_05690 Predicted membrane protein K07149 K07149; uncharacterized protein
D ROI_07030 hypothetical protein K07149 K07149; uncharacterized protein
D ROI_26680 Predicted membrane protein K07149 K07149; uncharacterized protein
D ROI_16800 Uncharacterized conserved protein K09117 K09117; uncharacterized protein
D ROI_10420 Uncharacterized conserved protein K09157 K09157; uncharacterized protein
D ROI_01520 Uncharacterized conserved protein K09702 K09702; uncharacterized protein
D ROI_26790 Uncharacterized conserved protein K09706 K09706; uncharacterized protein
D ROI_29220 Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain K09749 K09749; uncharacterized protein
D ROI_17790 Uncharacterized protein conserved in bacteria K09766 K09766; uncharacterized protein
D ROI_05850 Uncharacterized protein conserved in bacteria K09768 K09768; uncharacterized protein
D ROI_15340 Uncharacterized protein conserved in bacteria K09768 K09768; uncharacterized protein
D ROI_23010 Uncharacterized conserved protein K09779 K09779; uncharacterized protein
D ROI_30320 Uncharacterized protein conserved in bacteria K00243 K00243; uncharacterized protein
D ROI_16860 Uncharacterized protein conserved in bacteria K09955 K09955; uncharacterized protein
D ROI_10040 Uncharacterized protein conserved in bacteria K09955 K09955; uncharacterized protein
D ROI_33640 urea carboxylase-associated protein 2 K09967 K09967; uncharacterized protein
D ROI_33650 urea carboxylase-associated protein 1 K09967 K09967; uncharacterized protein
D ROI_22000 DNA polymerase family B, exonuclease domain. K07502 yprB; uncharacterized protein
D ROI_23280 Predicted ribosomal protein K07584 ysxB; uncharacterized protein
D ROI_21640 Predicted nucleic-acid-binding protein implicated in transcription termination K07742 ylxR; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 1, 2024