+F Repair protein KO
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DNA Repair and Recombination Proteins - Ralstonia insidiosa
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D ACS15_2841 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D ACS15_2796 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D ACS15_0742 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E ACS15_3194 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E ACS15_0367 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E ACS15_2395 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D ACS15_1232 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ACS15_3129 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ACS15_2755 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D ACS15_2841 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D ACS15_2796 methylated-DNA-[]-cysteine S-methyltransferase family protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D ACS15_2862 methylated-DNA-[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D ACS15_2866 methylated-DNA-[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D ACS15_0742 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D ACS15_4812 FAD binding domain of DNA photolyase family protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D ACS15_2864 2OG-Fe(II) oxygenase superfamily protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E ACS15_3194 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E ACS15_1989 uracil-DNA glycosylase, 4 family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E ACS15_2231 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E ACS15_2865 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E ACS15_2795 alkA N-terminal domain protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E ACS15_0367 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E ACS15_4703 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E ACS15_0364 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E ACS15_2395 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E ACS15_1527 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E ACS15_0055 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E ACS15_1897 endonuclease/Exonuclease/phosphatase family protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E ACS15_2287 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E ACS15_1957 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E ACS15_0939 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E ACS15_4431 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E ACS15_0387 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E ACS15_2389 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E ACS15_2327 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E ACS15_4011 description family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ACS15_0934 description family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ACS15_0939 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E ACS15_1957 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F ACS15_3404 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F ACS15_3403 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F ACS15_3356 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F ACS15_1033 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F ACS15_1583 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E ACS15_2249 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E ACS15_2859 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E ACS15_3511 exonuclease C-terminal family protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E ACS15_2826 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E ACS15_0947 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E ACS15_0974 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E ACS15_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E ACS15_2655 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E ACS15_3023 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E ACS15_1693 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E ACS15_1256 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E ACS15_2175 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E ACS15_1957 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E ACS15_4011 description family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ACS15_0934 description family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ACS15_5854 single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein
E ACS15_0389 single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E ACS15_0587 recA; protein RecA K03553 recA; recombination protein RecA
E ACS15_0504 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E ACS15_0503 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E ACS15_0506 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E ACS15_3599 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E ACS15_2061 putative primosomal replication protein n K02686 priB; primosomal replication protein N
E ACS15_3511 exonuclease C-terminal family protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D RecFOR pathway proteins
E ACS15_0587 recA; protein RecA K03553 recA; recombination protein RecA
E ACS15_1983 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E ACS15_2990 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E ACS15_2287 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E ACS15_2333 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E ACS15_2172 recR; recombination protein RecR K06187 recR; recombination protein RecR
E ACS15_2903 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E ACS15_5499 exonuclease, RdgC family protein K03554 rdgC; recombination associated protein RdgC
E ACS15_0504 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E ACS15_0503 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E ACS15_0506 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E ACS15_2176 description family protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E ACS15_2177 PD-(D/E)XK nuclease superfamily protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E ACS15_0996 AAA-like domain protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F ACS15_2507 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F ACS15_0003 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
F ACS15_3664 bacterial DNA-binding family protein K03530 hupB; DNA-binding protein HU-beta
F ACS15_1623 bacterial DNA-binding family protein K03530 hupB; DNA-binding protein HU-beta
F ACS15_2813 bacterial DNA-binding family protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F ACS15_2287 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F ACS15_2333 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F ACS15_2172 recR; recombination protein RecR K06187 recR; recombination protein RecR
F ACS15_1957 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F ACS15_1465 bacterial regulatory, Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F ACS15_0508 bacterial regulatory, Fis family protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F ACS15_1507 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
F ACS15_2498 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F ACS15_3511 exonuclease C-terminal family protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F ACS15_3391 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F ACS15_4431 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F ACS15_0387 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F ACS15_2389 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F ACS15_4179 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F ACS15_4239 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F ACS15_4319 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F ACS15_5149 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
F ACS15_4783 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D ACS15_1515 IMS HHH motif family protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D ACS15_0587 recA; protein RecA K03553 recA; recombination protein RecA
D ACS15_2066 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D ACS15_2903 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D ACS15_4545 putative cell division inhibitor protein K14160 imuA; protein ImuA
D ACS15_4503 putative required for the error-prone processing of DNA lesions along with dnaE2 and imuA K14161 imuB; protein ImuB
D ACS15_4502 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D ACS15_5854 single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein
D ACS15_0389 single-stranded DNA-binding family protein K03111 ssb; single-strand DNA-binding protein
D ACS15_0588 recX family protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D ACS15_3583 description family protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D ACS15_1564 DEAD_2 family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D ACS15_4808 DEXH box helicase, DNA ligase-associated K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D ACS15_1232 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ACS15_3129 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ACS15_2755 dut; dUTP diphosphatase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D ACS15_3098 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D ACS15_3097 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024