+E Transcription factors KO #

  Transcription Factors - Agrobacterium pusense IRBG74

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D BN877_II0206 DNA-binding domain-containing protein, AraC-type K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D BN877_II0137 DNA-binding domain-containing protein, AraC-type K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D BN877_p0069 Transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D BN877_I0416 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D BN877_II1725 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D BN877_I0887 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BN877_p0052 ada; Bifunctional transcriptional activator/DNA repair enzyme Ada [Includes: Methylphosphotriester-DNA--protein-cysteine S-methyltransferase; Methylated-DNA--protein-cysteine methyltransferase] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BN877_II0289 putative methylated-DNA--protein-cysteine methyltransferase (O-6-methylguanine-DNA alkyltransferase); putative ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D BN877_I2153 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BN877_I2397 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BN877_II0455 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BN877_I1352 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BN877_p0591 gcvA; Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BN877_II1283 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BN877_II0141 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BN877_I2645 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BN877_II0209 pcaQ; HTH-type transcriptional regulator PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D BN877_II1722 oxyR; transcriptional regulator of oxidative stress, regulates intracellular hydrogen peroxide (LysR family) K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D BN877_I0916 conserved protein of unknown function K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D BN877_p0251 Chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D BN877_p0276 nodD2; Nodulation protein D2 K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator D BN877_p0346 nodD1; Nodulation protein D1 K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator D BN877_p0274 syrM; HTH-type transcriptional regulator SyrM 2 K25882 syrM; LysR family transcriptional regulator, transcriptional activator of nodD3 and syrA D BN877_II0050 ampR; HTH-type transcriptional activator AmpR K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D BN877_II0353 putative HTH-type transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D BN877_II0801 Transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D BN877_II1319 nac; Nitrogen assimilation regulatory protein nac K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D BN877_I2594 Transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D BN877_p0402 putative LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon C DeoR family D BN877_II1001 glpR; glycerol-3-phosphate regulon repressor, transcriptional regulator protein, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D BN877_I0565 aglR; HTH-type transcriptional regulator AglR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BN877_I1421 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BN877_II0270 putative transcriptional regulatory protein, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BN877_II0331 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BN877_II1090 ABC-type sugar transport system, periplasmic component K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BN877_II0201 ABC-type sugar transport system, periplasmic component K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BN877_II1499 thuR; HTH-type transcriptional regulator ThuR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BN877_p0658 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BN877_p0465 LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BN877_p0479 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BN877_p0429 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BN877_p0448 putative LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BN877_II0391 cytR; HTH-type transcriptional repressor CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D BN877_II0085 Transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D BN877_II0949 LacI family transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D BN877_II1779 putative transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D BN877_I0179 putative transcriptional regulator, GntR family, with an UbiC transcription regulator-associated domain K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D BN877_I0158 putative GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D BN877_II0963 hutC; histidine utilization repressor, transcriptional regulatory protein GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D BN877_II1355 putative GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D BN877_I2691 Transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D BN877_II1564 putative GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D BN877_II1044 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BN877_I0632 Transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BN877_I0269 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BN877_II1708 Transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BN877_I2909 Transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BN877_II1815 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BN877_II0477 Transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BN877_II0129 Transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BN877_II0162 Transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BN877_I2824 Transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BN877_p0349 Transcriptional regulator with HTH domain and aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D BN877_I0810 betI; HTH-type transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D BN877_II0186 TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D BN877_I2461 rutR; DNA-binding transcriptional regulator of the alternative pyrimidine degradation pathway K09017 rutR; TetR/AcrR family transcriptional regulator D BN877_I0278 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BN877_II1104 Transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BN877_p0082 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BN877_p0088 putative TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BN877_II0856 Transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D BN877_p0444 ifeR; Isoflavonoid efflux regulatory protein K18135 nalD; TetR/AcrR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon D BN877_I2634 TetR family transcriptional regulator K18905 ameR; TetR/AcrR family transcriptional regulator, repressor of the ameABC operon D BN877_II0377 TetR family transcriptional regulator K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor C Lrp/AsnC family D BN877_I2624 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BN877_II1289 putR; Proline dehydrogenase transcriptional activator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BN877_I0715 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BN877_p0412 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BN877_p0437 Uncharacterized HTH-type transcriptional regulator y4tD K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BN877_II1102 Uncharacterized HTH-type transcriptional regulator y4tD K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BN877_II0492 bkdR; Bkd operon transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BN877_II0769 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BN877_p0257 putative AsnC family transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BN877_I1995 putative transcriptional regulatory protein, AsnC/Lrp family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D BN877_II1211 zrp; HTH-type transcriptional regulator Zrp K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D BN877_I2812 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA C MarR family D BN877_I1073 Transcriptional regulator, MarR family protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D BN877_I0829 ohrR1; Organic hydroperoxide resistance transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D BN877_II0912 ohrR2; Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D BN877_I0925 cueR; DNA-binding transcriptional activator of copper-responsive regulon genes K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D BN877_I1179 Transcriptional regulator, MerR family protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D BN877_II0984 soxR; DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D BN877_I0355 Ferric uptake regulation protein (Ferric uptake regulator, Fur family) K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D BN877_I1425 Fe2+/Zn2+ uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D BN877_I0151 irr; FUR family transcriptional regulator K09826 irr; Fur family transcriptional regulator, iron response regulator C IclR family D BN877_II0205 pcaR; Pca regulon regulatory protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein C CRP/FNR family D BN877_I1567 fnrN; putative transcriptional activator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D BN877_I2471 Regulator of biofilm formation, Fnr family protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator D BN877_p0525 putative transcriptional regulator, NnrR-like, Crp/Fnr family K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator C Rrf2 family D BN877_I0197 aau; Protein aau3 K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator C ArsR family D BN877_p0013 Putative transcriptional regulator; arsR2 K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D BN877_I2361 nolR; Nodulation protein nolR K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family D BN877_II0590 putative transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D BN877_I0583 Transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator C PadR family C Other families D BN877_I1265 BirA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D BN877_II0852 acoR; Acetoin catabolism regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D BN877_p0302 nifA; Mo/Fe nitrogenase specific transcriptional regulator, NifA K02584 nifA; Nif-specific regulatory protein D BN877_I2650 putative transcriptional regulatory protein, LysR family K02019 modE; molybdate transport system regulatory protein D BN877_I1695 conserved protein of unknown function K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D BN877_II1288 putA; Bifunctional putA protein: proline dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D BN877_I0649 putative DNA-binding protein with an HTH domain K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family C Others D BN877_II0630 conserved protein of unknown function K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D BN877_I2916 parB1; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BN877_p0141 parB2; plasmid partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BN877_II0977 repB1; plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BN877_p0002 repB2; plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BN877_I2849 putative transcriptional regulatory protein, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D BN877_I0903 putative transcriptional regulatory protein, Ros/MucR family K25884 mucR; MucR family transcriptional regulator, transcriptional regulator of exopolysaccharide biosynthesis D BN877_I0329 hrcA; Heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor D BN877_I1462 conserved protein of unknown function K07733 alpA; prophage regulatory protein D BN877_I0759 conserved hypothetical protein, hypothetical UPF0301 protein K07735 algH; putative transcriptional regulator D BN877_I1342 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D BN877_I1161 putative NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR D BN877_I2178 mraZ; Protein MraZ K03925 mraZ; transcriptional regulator MraZ D BN877_I1677 exoR; Exopolysaccharide production negative regulator K25885 exoR; exopolysaccharide production negative regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0