+E Transcription factors KO
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Transcription Factors - Agrobacterium pusense IRBG74
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D BN877_II0206 DNA-binding domain-containing protein, AraC-type K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D BN877_II0137 DNA-binding domain-containing protein, AraC-type K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D BN877_p0069 Transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D BN877_I0416 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D BN877_II1725 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D BN877_I0887 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D BN877_p0052 ada; Bifunctional transcriptional activator/DNA repair enzyme Ada [Includes: Methylphosphotriester-DNA--protein-cysteine S-methyltransferase; Methylated-DNA--protein-cysteine methyltransferase] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D BN877_II0289 putative methylated-DNA--protein-cysteine methyltransferase (O-6-methylguanine-DNA alkyltransferase); putative ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D BN877_I2153 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN877_I2397 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN877_II0455 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN877_I1352 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN877_p0591 gcvA; Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN877_II1283 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN877_II0141 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN877_I2645 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BN877_II0209 pcaQ; HTH-type transcriptional regulator PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D BN877_II1722 oxyR; transcriptional regulator of oxidative stress, regulates intracellular hydrogen peroxide (LysR family) K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D BN877_I0916 conserved protein of unknown function K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D BN877_p0251 Chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D BN877_p0276 nodD2; Nodulation protein D2 K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator
D BN877_p0346 nodD1; Nodulation protein D1 K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator
D BN877_p0274 syrM; HTH-type transcriptional regulator SyrM 2 K25882 syrM; LysR family transcriptional regulator, transcriptional activator of nodD3 and syrA
D BN877_II0050 ampR; HTH-type transcriptional activator AmpR K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D BN877_II0353 putative HTH-type transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D BN877_II0801 Transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D BN877_II1319 nac; Nitrogen assimilation regulatory protein nac K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D BN877_I2594 Transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D BN877_p0402 putative LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
C DeoR family
D BN877_II1001 glpR; glycerol-3-phosphate regulon repressor, transcriptional regulator protein, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D BN877_I0565 aglR; HTH-type transcriptional regulator AglR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BN877_I1421 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BN877_II0270 putative transcriptional regulatory protein, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BN877_II0331 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BN877_II1090 ABC-type sugar transport system, periplasmic component K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BN877_II0201 ABC-type sugar transport system, periplasmic component K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BN877_II1499 thuR; HTH-type transcriptional regulator ThuR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BN877_p0658 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BN877_p0465 LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BN877_p0479 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BN877_p0429 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BN877_p0448 putative LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BN877_II0391 cytR; HTH-type transcriptional repressor CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D BN877_II0085 Transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D BN877_II0949 LacI family transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D BN877_II1779 putative transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D BN877_I0179 putative transcriptional regulator, GntR family, with an UbiC transcription regulator-associated domain K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D BN877_I0158 putative GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D BN877_II0963 hutC; histidine utilization repressor, transcriptional regulatory protein GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D BN877_II1355 putative GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D BN877_I2691 Transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D BN877_II1564 putative GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D BN877_II1044 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BN877_I0632 Transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BN877_I0269 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BN877_II1708 Transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BN877_I2909 Transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BN877_II1815 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BN877_II0477 Transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BN877_II0129 Transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BN877_II0162 Transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BN877_I2824 Transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BN877_p0349 Transcriptional regulator with HTH domain and aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D BN877_I0810 betI; HTH-type transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D BN877_II0186 TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D BN877_I2461 rutR; DNA-binding transcriptional regulator of the alternative pyrimidine degradation pathway K09017 rutR; TetR/AcrR family transcriptional regulator
D BN877_I0278 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D BN877_II1104 Transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D BN877_p0082 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D BN877_p0088 putative TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D BN877_II0856 Transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D BN877_p0444 ifeR; Isoflavonoid efflux regulatory protein K18135 nalD; TetR/AcrR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon
D BN877_I2634 TetR family transcriptional regulator K18905 ameR; TetR/AcrR family transcriptional regulator, repressor of the ameABC operon
D BN877_II0377 TetR family transcriptional regulator K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
C Lrp/AsnC family
D BN877_I2624 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN877_II1289 putR; Proline dehydrogenase transcriptional activator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN877_I0715 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN877_p0412 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN877_p0437 Uncharacterized HTH-type transcriptional regulator y4tD K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN877_II1102 Uncharacterized HTH-type transcriptional regulator y4tD K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN877_II0492 bkdR; Bkd operon transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN877_II0769 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN877_p0257 putative AsnC family transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BN877_I1995 putative transcriptional regulatory protein, AsnC/Lrp family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D BN877_II1211 zrp; HTH-type transcriptional regulator Zrp K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D BN877_I2812 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
C MarR family
D BN877_I1073 Transcriptional regulator, MarR family protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D BN877_I0829 ohrR1; Organic hydroperoxide resistance transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D BN877_II0912 ohrR2; Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D BN877_I0925 cueR; DNA-binding transcriptional activator of copper-responsive regulon genes K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D BN877_I1179 Transcriptional regulator, MerR family protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D BN877_II0984 soxR; DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D BN877_I0355 Ferric uptake regulation protein (Ferric uptake regulator, Fur family) K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BN877_I1425 Fe2+/Zn2+ uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D BN877_I0151 irr; FUR family transcriptional regulator K09826 irr; Fur family transcriptional regulator, iron response regulator
C IclR family
D BN877_II0205 pcaR; Pca regulon regulatory protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D BN877_I1567 fnrN; putative transcriptional activator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D BN877_I2471 Regulator of biofilm formation, Fnr family protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D BN877_p0525 putative transcriptional regulator, NnrR-like, Crp/Fnr family K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
C Rrf2 family
D BN877_I0197 aau; Protein aau3 K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator
C ArsR family
D BN877_p0013 Putative transcriptional regulator; arsR2 K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D BN877_I2361 nolR; Nodulation protein nolR K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
D BN877_II0590 putative transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D BN877_I0583 Transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
C Other families
D BN877_I1265 BirA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BN877_II0852 acoR; Acetoin catabolism regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D BN877_p0302 nifA; Mo/Fe nitrogenase specific transcriptional regulator, NifA K02584 nifA; Nif-specific regulatory protein
D BN877_I2650 putative transcriptional regulatory protein, LysR family K02019 modE; molybdate transport system regulatory protein
D BN877_I1695 conserved protein of unknown function K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D BN877_II1288 putA; Bifunctional putA protein: proline dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D BN877_I0649 putative DNA-binding protein with an HTH domain K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
B Other transcription factors
C BglG family
C Others
D BN877_II0630 conserved protein of unknown function K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D BN877_I2916 parB1; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BN877_p0141 parB2; plasmid partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BN877_II0977 repB1; plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BN877_p0002 repB2; plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BN877_I2849 putative transcriptional regulatory protein, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D BN877_I0903 putative transcriptional regulatory protein, Ros/MucR family K25884 mucR; MucR family transcriptional regulator, transcriptional regulator of exopolysaccharide biosynthesis
D BN877_I0329 hrcA; Heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D BN877_I1462 conserved protein of unknown function K07733 alpA; prophage regulatory protein
D BN877_I0759 conserved hypothetical protein, hypothetical UPF0301 protein K07735 algH; putative transcriptional regulator
D BN877_I1342 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D BN877_I1161 putative NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D BN877_I2178 mraZ; Protein MraZ K03925 mraZ; transcriptional regulator MraZ
D BN877_I1677 exoR; Exopolysaccharide production negative regulator K25885 exoR; exopolysaccharide production negative regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0