+D GENES KO
#
KEGG Orthology (KO) - Rickettsia japonica
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:rja00010]
D RJP_0517 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D RJP_0277 pdhA; pyruvate dehydrogenase e1 component, alpha subunit precursor K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RJP_0278 pdhB; pyruvate dehydrogenase E1 component, beta subunit precursor K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RJP_0528 pdhC; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RJP_0556 lpdA2; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0916 pdhD; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00020 Citrate cycle (TCA cycle) [PATH:rja00020]
D RJP_0961 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RJP_0910 acnA; aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RJP_0282 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RJP_0186 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D RJP_0185 sucB; dihydrolipoamide acetyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RJP_0556 lpdA2; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0916 pdhD; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0463 sucD; succinyl-CoA synthetase alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RJP_0464 sucC; succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RJP_0132 sdhA; succinate dehydrogenase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RJP_0043 sdhB; succinate dehydrogenase catalytic subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RJP_0130 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RJP_0131 sdhD; succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RJP_0768 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RJP_0405 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RJP_0277 pdhA; pyruvate dehydrogenase e1 component, alpha subunit precursor K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RJP_0278 pdhB; pyruvate dehydrogenase E1 component, beta subunit precursor K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RJP_0528 pdhC; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway
D RJP_0319 lacA; ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00040 Pentose and glucuronate interconversions
D RJP_0892 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
C 00051 Fructose and mannose metabolism [PATH:rja00051]
D RJP_0501 exoC; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RJP_0319 lacA; ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism
D RJP_0357 capD; putative nucleoside-diphosphate sugar epimerase capD K17716 capD; UDP-glucose 4-epimerase [EC:5.1.3.2]
C 00053 Ascorbate and aldarate metabolism
D RJP_0892 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
C 00500 Starch and sucrose metabolism [PATH:rja00500]
D RJP_0811 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rja00520]
D RJP_0549 glmU; UDP-N-acetylglucosamine pyrophosphorylase K11528 glmU; UDP-N-acetylglucosamine pyrophosphorylase [EC:2.7.7.23]
D RJP_0658 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RJP_0263 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RJP_0358 rffE; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D RJP_0892 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RJP_0357 capD; putative nucleoside-diphosphate sugar epimerase capD K17716 capD; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RJP_0501 exoC; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
C 00620 Pyruvate metabolism [PATH:rja00620]
D RJP_0277 pdhA; pyruvate dehydrogenase e1 component, alpha subunit precursor K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RJP_0278 pdhB; pyruvate dehydrogenase E1 component, beta subunit precursor K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RJP_0528 pdhC; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RJP_0556 lpdA2; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0916 pdhD; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0113 phosphate acetyltransferase pta K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RJP_0401 tme; malate oxidoreductase and phosphate acetyltransferase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D RJP_0405 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RJP_0768 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RJP_0517 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D RJP_0837 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rja00630]
D RJP_0405 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RJP_0961 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RJP_0910 acnA; aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RJP_0837 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RJP_0687 accC; acetyl-CoA carboxylase, biotin carboxylase K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D RJP_0686 pccB; propionyl-CoA carboxylase beta chain precursor K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D RJP_0513 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RJP_0845 glyA; glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RJP_0556 lpdA2; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0916 pdhD; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00640 Propanoate metabolism [PATH:rja00640]
D RJP_0113 phosphate acetyltransferase pta K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RJP_0556 lpdA2; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0916 pdhD; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0687 accC; acetyl-CoA carboxylase, biotin carboxylase K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D RJP_0686 pccB; propionyl-CoA carboxylase beta chain precursor K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D RJP_0464 sucC; succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RJP_0463 sucD; succinyl-CoA synthetase alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00650 Butanoate metabolism [PATH:rja00650]
D RJP_0837 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RJP_0132 sdhA; succinate dehydrogenase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RJP_0043 sdhB; succinate dehydrogenase catalytic subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RJP_0130 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RJP_0131 sdhD; succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RJP_0484 gabD; succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RJP_0721 scoA; succinyl-CoA:3-ketoacid-coenzyme A transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RJP_0720 scoB; succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
C 00660 C5-Branched dibasic acid metabolism
D RJP_0464 sucC; succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RJP_0463 sucD; succinyl-CoA synthetase alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00562 Inositol phosphate metabolism [PATH:rja00562]
D RJP_0253 suhB; extragenic suppressor protein suhB K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:rja00190]
D RJP_0383 nuoA; NADH dehydrogenase alpha subunit K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D RJP_0382 nuoB; NADH dehydrogenase beta subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D RJP_0381 nuoC; NADH dehydrogenase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D RJP_0380 nuoD; NADH dehydrogenase delta subunit K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D RJP_0378 nuoE; NADH dehydrogenase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D RJP_0118 nuoF; NADH dehydrogenase I chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D RJP_0908 nuoG; NADH dehydrogenase gamma subunit K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D RJP_0907 nuoH; NADH dehydrogenase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D RJP_0906 nuoI; NADH dehydrogenase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D RJP_0901 nuoJ; NADH dehydrogenase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D RJP_0902 nuoK; NADH dehydrogenase kappa subunit K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D RJP_0903 nuoL1; NADH dehydrogenase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D RJP_0904 nuoM; NADH dehydrogenase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D RJP_0590 nuoN1; NADH dehydrogenase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D RJP_0132 sdhA; succinate dehydrogenase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RJP_0043 sdhB; succinate dehydrogenase catalytic subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RJP_0130 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RJP_0131 sdhD; succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RJP_0287 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D RJP_0288 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D RJP_0289 fbcH; cytochrome c1, heme protein precursor K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D RJP_0368 ctaB; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RJP_0198 coxC; cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D RJP_0436 coxA; cytochrome c oxidase polypeptide I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D RJP_0437 coxB; cytochrome c oxidase polypeptide II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D RJP_0324 cox11; cytochrome C oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D RJP_0273 coxW; cytochrome c oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RJP_0227 cydA; cytochrome d ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RJP_0228 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RJP_0268 cycM; cytochrome c K08738 CYC; cytochrome c
D RJP_0914 atpA; ATP synthase subunit A K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RJP_0912 atpD; ATP synthase subunit B K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RJP_0913 atpG; ATP synthase subunit C K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RJP_0915 atpH; ATP synthase subunit D K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RJP_0911 atpC; ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RJP_0021 atpB; ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RJP_0018 atpF; ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RJP_0019 atpX; ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RJP_0020 atpE; ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RJP_0726 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:rja00710]
D RJP_0319 lacA; ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RJP_0517 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D RJP_0401 tme; malate oxidoreductase and phosphate acetyltransferase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D RJP_0405 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:rja00720]
D RJP_0517 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D RJP_0405 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RJP_0768 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RJP_0132 sdhA; succinate dehydrogenase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RJP_0043 sdhB; succinate dehydrogenase catalytic subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RJP_0130 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RJP_0131 sdhD; succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RJP_0463 sucD; succinyl-CoA synthetase alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RJP_0464 sucC; succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RJP_0837 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RJP_0282 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RJP_0910 acnA; aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RJP_0493 folD; methylenetetrahydrofolate dehydrogenase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RJP_0113 phosphate acetyltransferase pta K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
C 00680 Methane metabolism [PATH:rja00680]
D RJP_0845 glyA; glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RJP_0405 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RJP_0113 phosphate acetyltransferase pta K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
C 00910 Nitrogen metabolism [PATH:rja00910]
D RJP_0867 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RJP_0513 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
C 00920 Sulfur metabolism
D RJP_0317 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:rja00061]
D RJP_0873 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D RJP_0834 fabD; acyl-carrier-protein S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RJP_0886 fabH; 3-oxoacyl-(acyl carrier protein) synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RJP_0874 fabF; 3-oxoacyl-(acyl carrier protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RJP_0872 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RJP_0008 fabZ; (3R)-hydroxymyristoyl ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RJP_0389 fabI; enoyl-(acyl carrier protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:rja00071]
D RJP_0837 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RJP_0684 aas; 2-acylglycerophosphoethanolamine acyltransferase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis [PATH:rja00074]
D RJP_0656 acpS; 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D RJP_0873 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D RJP_0834 fabD; acyl-carrier-protein S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism
D RJP_0566 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 00564 Glycerophospholipid metabolism [PATH:rja00564]
D RJP_0478 gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D RJP_0566 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RJP_0930 pldA; hypothetical protein K17717 pld; phospholipase D [EC:3.1.4.4]
D RJP_0684 aas; 2-acylglycerophosphoethanolamine acyltransferase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D RJP_0455 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D RJP_0256 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D RJP_0255 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D RJP_0048 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D RJP_0855 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
C 00565 Ether lipid metabolism
D RJP_0930 pldA; hypothetical protein K17717 pld; phospholipase D [EC:3.1.4.4]
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids [PATH:rja01040]
D RJP_0037 aco1; acyl-CoA desaturase 1 K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:rja00230]
D RJP_0233 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D RJP_0514 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RJP_0055 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RJP_0879 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D RJP_0497 nrdA; ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RJP_0498 nrdF; ribonucleotide-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RJP_0068 dgt; deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 dgt; dGTPase [EC:3.1.5.1]
D RJP_0313 gppA; guanosine pentaphosphate phosphohydrolase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D RJP_0740 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00240 Pyrimidine metabolism [PATH:rja00240]
D RJP_0160 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D RJP_0055 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RJP_0926 maf; maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D RJP_0407 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D RJP_0542 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D RJP_0073 dcd; deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D RJP_0497 nrdA; ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RJP_0498 nrdF; ribonucleotide-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RJP_0789 tdk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D RJP_0430 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RJP_0321 thyX; thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:rja00250]
D RJP_0091 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RJP_0484 gabD; succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RJP_0867 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RJP_0513 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
C 00260 Glycine, serine and threonine metabolism [PATH:rja00260]
D RJP_0858 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RJP_0339 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RJP_0845 glyA; glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RJP_0957 hemA; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RJP_0556 lpdA2; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0916 pdhD; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0256 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
C 00270 Cysteine and methionine metabolism [PATH:rja00270]
D RJP_0514 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RJP_0858 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RJP_0339 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RJP_0459 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RJP_0091 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RJP_0405 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00280 Valine, leucine and isoleucine degradation [PATH:rja00280]
D RJP_0459 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RJP_0556 lpdA2; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0916 pdhD; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0687 accC; acetyl-CoA carboxylase, biotin carboxylase K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D RJP_0686 pccB; propionyl-CoA carboxylase beta chain precursor K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D RJP_0721 scoA; succinyl-CoA:3-ketoacid-coenzyme A transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RJP_0720 scoB; succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D RJP_0837 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rja00290]
D RJP_0459 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00300 Lysine biosynthesis [PATH:rja00300]
D RJP_0858 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RJP_0339 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RJP_0460 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RJP_0152 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D RJP_0201 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D RJP_0998 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RJP_0446 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RJP_0716 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RJP_0717 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:rja00310]
D RJP_0185 sucB; dihydrolipoamide acetyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RJP_0556 lpdA2; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0916 pdhD; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0837 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RJP_0484 gabD; succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00220 Arginine biosynthesis [PATH:rja00220]
D RJP_0513 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RJP_0867 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RJP_0091 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RJP_0106 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
C 00330 Arginine and proline metabolism
D RJP_0091 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism
C 00350 Tyrosine metabolism [PATH:rja00350]
D RJP_0091 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RJP_0484 gabD; succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism
D RJP_0091 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00380 Tryptophan metabolism [PATH:rja00380]
D RJP_0185 sucB; dihydrolipoamide acetyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RJP_0556 lpdA2; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0916 pdhD; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0837 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rja00400]
D RJP_0091 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
C 00430 Taurine and hypotaurine metabolism [PATH:rja00430]
D RJP_0867 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RJP_0113 phosphate acetyltransferase pta K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
C 00440 Phosphonate and phosphinate metabolism
D RJP_0992 phnP; metal-dependent hydrolase of the beta-lactamase superfamily I K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:rja00450]
D RJP_0481 trxB1; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RJP_0494 trxB2; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RJP_0788 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:rja00460]
D RJP_0811 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RJP_0845 glyA; glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:rja00470]
D RJP_0097 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RJP_0264 ddlB; D-alanylalanine synthetase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RJP_0446 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
C 00480 Glutathione metabolism [PATH:rja00480]
D RJP_0146 pepA; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RJP_0519 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RJP_0282 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:rja00540]
D RJP_0007 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RJP_0270 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D RJP_0009 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RJP_0827 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D RJP_0344 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RJP_0817 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RJP_0505 kpsF; kpsF protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D RJP_0062 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RJP_0408 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RJP_0089 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RJP_0816 htrB; lipid-A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rja00541]
D RJP_0357 capD; putative nucleoside-diphosphate sugar epimerase capD K17716 capD; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RJP_0892 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RJP_0356 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D RJP_0501 exoC; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RJP_0358 rffE; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
C 00550 Peptidoglycan biosynthesis [PATH:rja00550]
D RJP_0658 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RJP_0263 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RJP_0262 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RJP_0716 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RJP_0264 ddlB; D-alanylalanine synthetase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RJP_0717 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RJP_0456 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RJP_0718 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RJP_0441 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RJP_0918 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RJP_0202 pbpC; bifunctional penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D RJP_0625 pbpA1; penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RJP_0628 pbpA2; penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RJP_0420 dacF; penicillin-binding protein dacF precursor K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:rja00730]
D RJP_0584 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RJP_0585 spl1; nifs protein homolog K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RJP_0740 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism
D RJP_0595 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism
C 00760 Nicotinate and nicotinamide metabolism [PATH:rja00760]
D RJP_0476 ppnK; inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D RJP_0981 pntAB; NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D RJP_0982 pntAA; NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D RJP_0078 pntB; NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D RJP_0484 gabD; succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:rja00770]
D RJP_0828 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D RJP_0656 acpS; 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D RJP_0459 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:rja00780]
D RJP_0874 fabF; 3-oxoacyl-(acyl carrier protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RJP_0872 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RJP_0008 fabZ; (3R)-hydroxymyristoyl ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RJP_0389 fabI; enoyl-(acyl carrier protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RJP_0524 birA; biotin-(acetyl-CoA carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:rja00785]
D RJP_1000 lipB; putative lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D RJP_0844 lipA; lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D RJP_0556 lpdA2; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0916 pdhD; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0277 pdhA; pyruvate dehydrogenase e1 component, alpha subunit precursor K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RJP_0278 pdhB; pyruvate dehydrogenase E1 component, beta subunit precursor K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RJP_0528 pdhC; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RJP_0186 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D RJP_0185 sucB; dihydrolipoamide acetyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
C 00790 Folate biosynthesis [PATH:rja00790]
D RJP_0412 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D RJP_0522 folC; folylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D RJP_0184 putative 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D RJP_0704 nrdG; organic radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D RJP_0798 exsB; trans-regulatory protein exsB K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D RJP_0076 queF; hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
C 00670 One carbon pool by folate [PATH:rja00670]
D RJP_0493 folD; methylenetetrahydrofolate dehydrogenase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RJP_0845 glyA; glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RJP_0217 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RJP_0321 thyX; thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D RJP_0557 5-Formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:rja00860]
D RJP_0957 hemA; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RJP_0349 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RJP_0680 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RJP_0592 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RJP_0563 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D RJP_1010 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D RJP_1007 hemF; coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D RJP_1008 putative membrane protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D RJP_1009 hemH; putative ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D RJP_0368 ctaB; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RJP_0273 coxW; cytochrome c oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rja00130]
D RJP_0791 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D RJP_0931 ubiD; ubiD family decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D RJP_0595 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D RJP_0681 ubiG; ubiquinone biosynthesis O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D RJP_0620 ubiH; 2-octaprenyl-6-methoxyphenyl hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D RJP_0784 ubiE; ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D RJP_0197 coq7; ubiquinone biosynthesis protein coq7 K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:rja00900]
D RJP_0837 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RJP_0595 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D RJP_0546 fni; isopentenyl pyrophosphate isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D RJP_0576 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RJP_0456 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
D RJP_0356 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:rja00946]
D RJP_0811 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:rja00261]
D RJP_0858 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RJP_0339 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RJP_0460 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RJP_0152 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:rja00521]
D RJP_0253 suhB; extragenic suppressor protein suhB K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RJP_0356 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis
C 00401 Novobiocin biosynthesis
D RJP_0091 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
C 00333 Prodigiosin biosynthesis
D RJP_0834 fabD; acyl-carrier-protein S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RJP_0872 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RJP_0389 fabI; enoyl-(acyl carrier protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D RJP_0873 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D RJP_0811 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:rja00362]
D RJP_0206 fdxB; ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D RJP_0837 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
D RJP_0595 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:rja03020]
D RJP_0143 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RJP_0144 rpoC; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RJP_0737 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RJP_0657 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:rja03010]
D RJP_0543 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RJP_0087 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RJP_0755 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RJP_0367 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RJP_0744 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RJP_0038 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RJP_0134 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RJP_0747 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RJP_0248 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RJP_0762 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RJP_0738 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RJP_0739 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RJP_0748 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RJP_0507 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RJP_1003 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RJP_0752 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RJP_0039 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RJP_0757 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RJP_0735 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RJP_0694 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D RJP_0140 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RJP_0758 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RJP_0761 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RJP_0760 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RJP_0749 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RJP_0746 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RJP_0142 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RJP_0040 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RJP_0141 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RJP_0139 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RJP_0247 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RJP_0751 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RJP_0742 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RJP_0754 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RJP_0736 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RJP_0745 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RJP_0115 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RJP_0702 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RJP_0856 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RJP_0756 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RJP_0759 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RJP_0750 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RJP_0705 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D RJP_0857 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RJP_0102 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RJP_0753 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RJP_0743 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RJP_0103 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RJP_0887 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RJP_1004 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RJP_0701 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RJP_0703 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RJP_0551 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D RJP_0696 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RJP_0219 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RJP_0220 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:rja00970]
D RJP_0545 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RJP_0652 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RJP_0577 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RJP_0616 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RJP_0954 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RJP_0294 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RJP_0490 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RJP_0386 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RJP_0578 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RJP_0016 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RJP_0733 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RJP_0764 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RJP_0800 tRNA-His K14226 tRNA-His; tRNA His
D RJP_0410 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RJP_0997 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RJP_0775 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RJP_0661 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RJP_0409 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RJP_0884 tRNA-Met K14230 tRNA-Met; tRNA Met
D RJP_0249 tRNA-Met K14230 tRNA-Met; tRNA Met
D RJP_0104 tRNA-Met K14230 tRNA-Met; tRNA Met
D RJP_0010 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RJP_0924 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RJP_0564 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RJP_0835 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RJP_0548 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RJP_0165 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RJP_0083 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RJP_1002 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RJP_0136 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RJP_0765 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RJP_0734 tRNA-Val K14237 tRNA-Val; tRNA Val
D RJP_0540 tRNA-Val K14237 tRNA-Val; tRNA Val
D RJP_0349 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RJP_0680 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RJP_0156 gatA; glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RJP_0155 gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RJP_0157 gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RJP_0975 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RJP_0149 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RJP_0967 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RJP_0966 glyS; glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RJP_0235 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RJP_0896 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RJP_0086 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RJP_0788 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RJP_0217 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RJP_0793 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RJP_0452 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RJP_0691 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RJP_0399 lysK; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D RJP_0069 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RJP_0413 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RJP_0328 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RJP_0448 pheS; phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RJP_0449 pheT; phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RJP_0613 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RJP_0565 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:rja03060]
D RJP_0741 secY; preprotein translocase secY K03076 secY; preprotein translocase subunit SecY
D RJP_0137 secE; translocase K03073 secE; preprotein translocase subunit SecE
D RJP_0084 secG; protein-export membrane protein secG K03075 secG; preprotein translocase subunit SecG
D RJP_0729 secD; protein export protein secD K03072 secD; preprotein translocase subunit SecD
D RJP_0117 secF; protein export protein secF K03074 secF; preprotein translocase subunit SecF
D RJP_0730 yajC; preprotein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D RJP_0047 yidC; putative inner membrane protein translocase component yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RJP_0654 secA; preprotein translocase secA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RJP_0074 secB; export protein secB K03071 secB; preprotein translocase subunit SecB
D RJP_0179 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RJP_0984 signal recognition particle RNA (4.5S RNA) K01983 ffs; SRP RNA
D RJP_0889 ftsY; signal recognition particle-docking protein ftsY K03110 ftsY; fused signal recognition particle receptor
D RJP_0854 twin argininte translocase protein A K03116 tatA; sec-independent protein translocase protein TatA
D RJP_0895 tatC; sec-independent protein translocase protein tatC K03118 tatC; sec-independent protein translocase protein TatC
D RJP_0119 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RJP_0439 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:rja04122]
D RJP_0584 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RJP_0585 spl1; nifs protein homolog K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RJP_0326 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
C 03050 Proteasome
C 03018 RNA degradation [PATH:rja03018]
D RJP_0250 invA; dinucleoside polyphosphate hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D RJP_0272 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RJP_0506 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RJP_0532 rho; transcription termination factor rho K03628 rho; transcription termination factor Rho
D RJP_0477 putative hydrolase of the metallo-beta-lactamase superfamily K12574 rnj; ribonuclease J [EC:3.1.-.-]
D RJP_0191 dnaK; molecular chaperone dnaK K04043 dnaK; molecular chaperone DnaK
D RJP_0676 groEL; chaperonin groEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RJP_0014 pcnB; poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:rja03030]
D RJP_0829 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RJP_0891 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RJP_0985 dnaX; DNA polymerase III subunits gamma and tau chains K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RJP_0178 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RJP_0196 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RJP_0996 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RJP_0450 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RJP_0596 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RJP_0978 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RJP_0950 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RJP_0824 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RJP_0209 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RJP_0819 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:rja03410]
D RJP_0848 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RJP_0377 mpg; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D RJP_0785 mutM; formamidopyrimidine-DNA glycosidase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RJP_0962 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D RJP_0276 xth1; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RJP_0780 xthA2; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RJP_0530 recJ; single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RJP_0819 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:rja03420]
D RJP_0715 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RJP_0949 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D RJP_0210 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D RJP_0634 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D RJP_0486 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RJP_0819 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:rja03430]
D RJP_0318 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS
D RJP_1005 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D RJP_0486 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RJP_0779 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RJP_0374 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RJP_0530 recJ; single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RJP_0950 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RJP_0891 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RJP_0450 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RJP_0985 dnaX; DNA polymerase III subunits gamma and tau chains K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RJP_0196 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RJP_0178 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RJP_0829 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RJP_0996 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RJP_0819 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:rja03440]
D RJP_0530 recJ; single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RJP_0950 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RJP_0026 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF
D RJP_0604 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
D RJP_0473 recR; recombination protein recR K06187 recR; recombination protein RecR
D RJP_0871 recA; recombinase A K03553 recA; recombination protein RecA
D RJP_0415 ruvA; Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA
D RJP_0417 ruvB; Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RJP_0122 ruvC; crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RJP_0722 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RJP_0891 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RJP_0450 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RJP_0985 dnaX; DNA polymerase III subunits gamma and tau chains K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RJP_0196 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RJP_0178 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RJP_0829 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RJP_0996 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RJP_0594 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:rja02010]
D RJP_0096 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein
D RJP_0822 ABC transporter substrate binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RJP_0098 ABC transporter permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RJP_0099 mkl; ribonucleotide ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RJP_0013 znuA; zinc/manganese ABC transporter substrate binding protein K09815 znuA; zinc transport system substrate-binding protein
D RJP_0682 znuB; zinc/manganese ABC transporter permease protein K09816 znuB; zinc transport system permease protein
D RJP_0945 znuC; zinc ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D RJP_0521 bioY; bioY family protein K03523 bioY; biotin transport system substrate-specific component
D RJP_0004 rfbA; O-antigen export system permease protein rfbA K09690 wzm; homopolymeric O-antigen transport system permease protein
D RJP_0003 rfbE; O-antigen export system ATP-binding protein rfbE K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D RJP_0804 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D RJP_0805 lolD; lipoprotein releasing system ATP-binding protein lolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RJP_0941 ccmC; heme exporter protein C K02195 ccmC; heme exporter protein C
D RJP_0285 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B
D RJP_0905 ccmA; heme exporter protein A K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D RJP_0995 putative permeases K07091 lptF; lipopolysaccharide export system permease protein
D RJP_0883 putative permeases K11720 lptG; lipopolysaccharide export system permease protein
D RJP_0502 abcT2; ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RJP_0418 msbA1; multidrug resistance protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RJP_0338 aprD; alkaline protease secretion ATP-binding protein aprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:rja03070]
D RJP_0238 tolC; type I secretion outer membrane protein tolC K12340 tolC; outer membrane protein
D RJP_0729 secD; protein export protein secD K03072 secD; preprotein translocase subunit SecD
D RJP_0117 secF; protein export protein secF K03074 secF; preprotein translocase subunit SecF
D RJP_0137 secE; translocase K03073 secE; preprotein translocase subunit SecE
D RJP_0084 secG; protein-export membrane protein secG K03075 secG; preprotein translocase subunit SecG
D RJP_0741 secY; preprotein translocase secY K03076 secY; preprotein translocase subunit SecY
D RJP_0730 yajC; preprotein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D RJP_0047 yidC; putative inner membrane protein translocase component yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RJP_0654 secA; preprotein translocase secA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RJP_0889 ftsY; signal recognition particle-docking protein ftsY K03110 ftsY; fused signal recognition particle receptor
D RJP_0074 secB; export protein secB K03071 secB; preprotein translocase subunit SecB
D RJP_0179 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RJP_0854 twin argininte translocase protein A K03116 tatA; sec-independent protein translocase protein TatA
D RJP_0895 tatC; sec-independent protein translocase protein tatC K03118 tatC; sec-independent protein translocase protein TatC
D RJP_0107 virB3; type IV secretory pathway, virB3-like protein K03198 virB3; type IV secretion system protein VirB3
D RJP_0306 virB9-1; virB9 protein K03204 virB9; type IV secretion system protein VirB9
D RJP_0309 virB9-2; virB9 protein precursor K03204 virB9; type IV secretion system protein VirB9
D RJP_0109 virB6-1; trbL/virB6 plasmid Conjugative transfer protein K03201 virB6; type IV secretion system protein VirB6
D RJP_0110 virB6-2; trbL/virB6 plasmid Conjugative transfer protein K03201 virB6; type IV secretion system protein VirB6
D RJP_0111 virB6-3; trbL/virB6 plasmid Conjugative transfer protein K03201 virB6; type IV secretion system protein VirB6
D RJP_0112 virB6-4; trbL/virB6 plasmid Conjugative transfer protein K03201 virB6; type IV secretion system protein VirB6
D RJP_0307 virB8-1; virB8 protein K03203 virB8; type IV secretion system protein VirB8
D RJP_0308 virB8-2; virB8 protein K03203 virB8; type IV secretion system protein VirB8
D RJP_0310 virB10; virB10 protein K03195 virB10; type IV secretion system protein VirB10
D RJP_0897 virB4-2; type IV secretion/conjugal transfer ATPase, virB4 family K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RJP_0108 virB4-1; type IV secretion/conjugal transfer ATPase, virB4 family K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RJP_0311 virB11; virB11 protein K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D RJP_0312 virD4; virD4 protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:rja02020]
D RJP_0457 envZ; osmolarity sensor protein envZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D RJP_0458 ompR; petR protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D RJP_0128 htrA; periplasmic serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D RJP_0273 coxW; cytochrome c oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RJP_0712 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein
D RJP_0496 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RJP_0513 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RJP_0695 ntrY; nitrogen regulation protein ntrY K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D RJP_0622 ntrX; nitrogen assimilation regulatory protein ntrX K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D RJP_0837 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RJP_0243 barA; histidine kinase sensor protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D RJP_0251 pleD; regulatory components of sensory transduction system K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65]
D RJP_0075 czcR; transcriptional activator protein czcR K13584 ctrA; two-component system, cell cycle response regulator CtrA
D RJP_0287 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D RJP_0288 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D RJP_0289 fbcH; cytochrome c1, heme protein precursor K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D RJP_0268 cycM; cytochrome c K08738 CYC; cytochrome c
D RJP_0227 cydA; cytochrome d ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RJP_0228 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RJP_0238 tolC; type I secretion outer membrane protein tolC K12340 tolC; outer membrane protein
D RJP_0358 rffE; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D RJP_0287 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:rja02024]
D RJP_0047 yidC; putative inner membrane protein translocase component yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RJP_0137 secE; translocase K03073 secE; preprotein translocase subunit SecE
D RJP_0084 secG; protein-export membrane protein secG K03075 secG; preprotein translocase subunit SecG
D RJP_0741 secY; preprotein translocase secY K03076 secY; preprotein translocase subunit SecY
D RJP_0730 yajC; preprotein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D RJP_0654 secA; preprotein translocase secA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RJP_0889 ftsY; signal recognition particle-docking protein ftsY K03110 ftsY; fused signal recognition particle receptor
D RJP_0074 secB; export protein secB K03071 secB; preprotein translocase subunit SecB
D RJP_0179 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
D RJP_0977 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:rja01501]
D RJP_0419 ampG4; ampG protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RJP_0573 ampG1; ampG protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RJP_0238 tolC; type I secretion outer membrane protein tolC K12340 tolC; outer membrane protein
D RJP_0918 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RJP_0625 pbpA1; penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RJP_0628 pbpA2; penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:rja01502]
D RJP_0264 ddlB; D-alanylalanine synthetase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RJP_0097 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RJP_0717 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RJP_0718 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RJP_0441 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rja01503]
D RJP_0128 htrA; periplasmic serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D RJP_0238 tolC; type I secretion outer membrane protein tolC K12340 tolC; outer membrane protein
D RJP_0007 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:rja01000]
C 01001 Protein kinases [BR:rja01001]
D RJP_0457 envZ; osmolarity sensor protein envZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D RJP_0695 ntrY; nitrogen regulation protein ntrY K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D RJP_0243 barA; histidine kinase sensor protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:rja01009]
D RJP_0956 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
C 01002 Peptidases and inhibitors [BR:rja01002]
D RJP_0439 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RJP_0435 putative glutamine amidotransferase K07010 K07010; putative glutamine amidotransferase
D RJP_0146 pepA; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RJP_0998 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RJP_0935 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RJP_0579 pepP; aminopeptidase P K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D RJP_0187 thermostable carboxypeptidase K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D RJP_0042 ftsH; cell division protein ftsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RJP_0167 putative membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D RJP_0128 htrA; periplasmic serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D RJP_0299 ptrB; protease II K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D RJP_0420 dacF; penicillin-binding protein dacF precursor K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RJP_0544 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D RJP_0489 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D RJP_0119 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RJP_0242 ctp; carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D RJP_0533 sppA2; signal peptide peptidase sppA K04773 sppA; protease IV [EC:3.4.21.-]
D RJP_0342 hslV; ATP-dependent protease peptidase subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D RJP_0617 large extracellular alpha-helical protein K06894 yfhM; alpha-2-macroglobulin
D RJP_0127 hflC; membrane protease subunit, stomatin/prohibitin-like protein K04087 hflC; modulator of FtsH protease HflC
D RJP_0126 hflK; protease activity modulator hflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:rja01003]
D RJP_0202 pbpC; bifunctional penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D RJP_0918 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:rja01005]
D RJP_0007 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RJP_0344 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RJP_0270 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D RJP_0009 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RJP_0827 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D RJP_0817 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RJP_0816 htrB; lipid-A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RJP_0089 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RJP_0062 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RJP_0408 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RJP_0505 kpsF; kpsF protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rja01011]
D RJP_0658 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RJP_0263 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RJP_0262 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RJP_0716 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RJP_0264 ddlB; D-alanylalanine synthetase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RJP_0097 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RJP_0718 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RJP_0441 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RJP_0725 mviN; integral membrane protein mviN K03980 murJ; putative peptidoglycan lipid II flippase
D RJP_0918 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RJP_0202 pbpC; bifunctional penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D RJP_0625 pbpA1; penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RJP_0628 pbpA2; penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RJP_0420 dacF; penicillin-binding protein dacF precursor K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RJP_0431 mltE1; soluble lytic murein transglycosylase precursor K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D RJP_0346 hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D RJP_0421 rlpA; rare lipoprotein A precursor K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D RJP_1001 ampD; ampD protein homolog K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:rja01004]
D RJP_0834 fabD; acyl-carrier-protein S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RJP_0886 fabH; 3-oxoacyl-(acyl carrier protein) synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RJP_0874 fabF; 3-oxoacyl-(acyl carrier protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RJP_0872 fabG; 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RJP_0008 fabZ; (3R)-hydroxymyristoyl ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RJP_0389 fabI; enoyl-(acyl carrier protein) reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RJP_0037 aco1; acyl-CoA desaturase 1 K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D RJP_0566 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:rja01006]
D RJP_0576 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RJP_0456 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RJP_0500 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RJP_0791 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D RJP_0368 ctaB; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:rja01007]
D RJP_0399 lysK; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D RJP_0349 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RJP_0680 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RJP_0613 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RJP_0565 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RJP_0086 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RJP_0069 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RJP_0788 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RJP_0691 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RJP_0793 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RJP_0452 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RJP_0149 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RJP_0328 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RJP_0967 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RJP_0966 glyS; glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RJP_0896 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RJP_0413 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RJP_0235 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RJP_0975 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RJP_0448 pheS; phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RJP_0449 pheT; phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RJP_0091 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RJP_0957 hemA; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RJP_0459 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:rja00194]
D RJP_0911 atpC; ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RJP_0912 atpD; ATP synthase subunit B K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RJP_0913 atpG; ATP synthase subunit C K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RJP_0914 atpA; ATP synthase subunit A K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RJP_0915 atpH; ATP synthase subunit D K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RJP_0018 atpF; ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RJP_0019 atpX; ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RJP_0020 atpE; ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RJP_0021 atpB; ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RJP_0022 hypothetical protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:rja03000]
D RJP_0586 iscR; iron-sulfur cluster assembly transcription factor iscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D RJP_0611 putative transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D RJP_0524 birA; biotin-(acetyl-CoA carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RJP_0732 putative antitoxin of toxin-antitoxin (TA) system K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D RJP_0260 bolA1; bolA protein homolog K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D RJP_0059 spo0J; parB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RJP_0024 transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D RJP_0030 hypothetical protein K07735 algH; putative transcriptional regulator
D RJP_0927 dksA; dnaK suppressor-like protein K06204 dksA; RNA polymerase-binding transcription factor
D RJP_0631 hypothetical protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:rja03021]
D RJP_0737 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RJP_0143 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RJP_0144 rpoC; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RJP_0657 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RJP_0977 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D RJP_0323 rpoH; RNA polymerase sigma factor K03089 rpoH; RNA polymerase sigma-32 factor
D RJP_0609 nusA; transcription elongation factor nusA K02600 nusA; transcription termination/antitermination protein NusA
D RJP_0168 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D RJP_0138 nusG; transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D RJP_0927 dksA; dnaK suppressor-like protein K06204 dksA; RNA polymerase-binding transcription factor
D RJP_0980 greA; transcription elongation factor greA K03624 greA; transcription elongation factor GreA
D RJP_0532 rho; transcription termination factor rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:rja03019]
D RJP_0272 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RJP_0120 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RJP_0477 putative hydrolase of the metallo-beta-lactamase superfamily K12574 rnj; ribonuclease J [EC:3.1.-.-]
D RJP_0506 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RJP_0532 rho; transcription termination factor rho K03628 rho; transcription termination factor Rho
D RJP_0191 dnaK; molecular chaperone dnaK K04043 dnaK; molecular chaperone DnaK
D RJP_0676 groEL; chaperonin groEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RJP_0014 pcnB; poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D RJP_0250 invA; dinucleoside polyphosphate hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
C 03041 Spliceosome
C 03011 Ribosome [BR:rja03011]
D RJP_0543 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RJP_0087 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RJP_0755 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RJP_0367 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RJP_0744 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RJP_0038 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RJP_0134 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RJP_0747 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RJP_0248 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RJP_0762 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RJP_0738 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RJP_0739 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RJP_0748 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RJP_0507 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RJP_1003 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RJP_0752 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RJP_0039 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RJP_0757 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RJP_0735 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RJP_0694 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D RJP_0140 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RJP_0758 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RJP_0761 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RJP_0760 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RJP_0749 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RJP_0746 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RJP_0040 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RJP_0141 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RJP_0139 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RJP_0142 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RJP_0247 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RJP_0751 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RJP_0742 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RJP_0754 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RJP_0736 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RJP_0745 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RJP_0115 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RJP_0702 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RJP_0856 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RJP_0756 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RJP_0759 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RJP_0750 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RJP_0857 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RJP_0102 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RJP_0753 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RJP_0743 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RJP_0103 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RJP_0887 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RJP_1004 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RJP_0701 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RJP_0703 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RJP_0551 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D RJP_0705 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D RJP_0220 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RJP_0696 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RJP_0219 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:rja03009]
D RJP_0120 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RJP_0121 era; GTP-binding protein era K03595 era; GTPase
D RJP_0960 obgE; GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
D RJP_0927 dksA; dnaK suppressor-like protein K06204 dksA; RNA polymerase-binding transcription factor
D RJP_0609 nusA; transcription elongation factor nusA K02600 nusA; transcription termination/antitermination protein NusA
D RJP_0168 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D RJP_0138 nusG; transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D RJP_0776 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D RJP_0601 N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D RJP_0174 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D RJP_0057 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RJP_0630 mraW; S-adenosyl-methyltransferase mraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D RJP_0852 hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D RJP_0612 tlyA; hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D RJP_0766 tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D RJP_0169 rrmJ; ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D RJP_0598 rluB; ribosomal large subunit pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RJP_0274 rluA1; ribosomal large subunit pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D RJP_0963 sfhB; ribosomal large subunit pseudouridine synthases rluD subfamily protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D RJP_0372 rimM; 16S rRNA-processing protein K02860 rimM; 16S rRNA processing protein RimM
D RJP_0272 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RJP_0355 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D RJP_0781 engA; GTP-binding protein engA K03977 engA; GTPase
D RJP_0965 sua5/yciO/yrdC/ywlC family putative translation factor protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RJP_0470 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D RJP_0610 hypothetical protein K09748 rimP; ribosome maturation factor RimP
D RJP_0922 iojap-related protein K09710 ybeB; ribosome-associated protein
D RJP_0843 putative metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
D RJP_0707 gtp1; GTP-binding protein K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:rja03016]
D RJP_0349 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RJP_0680 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RJP_0413 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RJP_0691 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RJP_0452 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RJP_0788 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RJP_0069 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RJP_0149 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RJP_0975 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RJP_0235 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RJP_0896 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RJP_0086 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RJP_0793 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RJP_0328 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RJP_0448 pheS; phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RJP_0449 pheT; phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RJP_0613 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RJP_0565 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RJP_0340 pkcI; protein kinase C inhibitor 1 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RJP_0976 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RJP_0508 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D RJP_0584 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RJP_0585 spl1; nifs protein homolog K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RJP_0965 sua5/yciO/yrdC/ywlC family putative translation factor protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RJP_0500 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RJP_0868 trmE; tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D RJP_0056 gidA; glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RJP_0317 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D RJP_0700 rnpA; ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RJP_0518 RNA subunit (M1 RNA) of ribonuclease P K01978 rnpB; M1 RNA
D RJP_0674 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D RJP_0453 rnd2; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D RJP_0558 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D RJP_0060 abcT1; ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
D RJP_0399 lysK; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D RJP_0967 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RJP_0966 glyS; glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RJP_0942 cytosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D RJP_0011 nifR3; putative TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D RJP_0919 miaB; tRNA-i(6)A37 thiotransferase enzyme miaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D RJP_0447 miaB-like tRNA modifying enzyme K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D RJP_0123 tRNA/rRNA methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D RJP_0114 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D RJP_0326 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RJP_0582 iscA2; iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein
D RJP_0560 putative aminomethyltransferase related to gcvT K06980 ygfZ; tRNA-modifying protein YgfZ
D RJP_0222 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D RJP_0798 exsB; trans-regulatory protein exsB K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D RJP_0184 putative 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D RJP_0704 nrdG; organic radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D RJP_0076 queF; hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D RJP_0970 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D RJP_0820 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D RJP_0041 mesJ; cell cycle protein mesJ K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D RJP_0606 putative glycoprotein endopeptidase K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D RJP_0036 gcp; sialoglycoprotease K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D RJP_0012 putative P-loop hydrolase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D RJP_0506 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:rja03012]
D RJP_0608 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RJP_0527 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RJP_0088 tsf; Elongation factor Ts K02357 tsf; elongation factor Ts
D RJP_0763 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RJP_0135 fusA; elongation factor EF-2 K02355 fusA; elongation factor G
D RJP_0529 prfA; peptide chain release factor RF-1 K02835 prfA; peptide chain release factor 1
D RJP_0159 frr; ribosome releasing factor K02838 frr; ribosome recycling factor
D RJP_0964 trmB; tRNA (guanine-N(7)-)-methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D RJP_0706 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D RJP_0925 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D RJP_0252 efp; translation elongation factor EF-P K02356 efp; elongation factor P
D RJP_0292 prfB; peptide chain release factor RF-2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:rja03110]
D RJP_0034 clpB; clpB protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D RJP_0796 clpX; ATP-dependent protease ATP-binding subunit K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D RJP_0343 hslU; ATP-dependent protease ATP-binding subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D RJP_0956 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
D RJP_0191 dnaK; molecular chaperone dnaK K04043 dnaK; molecular chaperone DnaK
D RJP_0207 hscA; chaperone protein hscA K04044 hscA; molecular chaperone HscA
D RJP_0676 groEL; chaperonin groEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RJP_0190 dnaJ; dnaJ protein K03686 dnaJ; molecular chaperone DnaJ
D RJP_0208 hscB; co-chaperone hscB K04082 hscB; molecular chaperone HscB
D RJP_0673 grpE; grpE protein K03687 GRPE; molecular chaperone GrpE
D RJP_0675 groES; co-chaperonin groES K04078 groES; chaperonin GroES
D RJP_0128 htrA; periplasmic serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D RJP_0042 ftsH; cell division protein ftsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RJP_0021 atpB; ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RJP_0074 secB; export protein secB K03071 secB; preprotein translocase subunit SecB
D RJP_0635 hypothetical protein K09796 pccA; periplasmic copper chaperone A
D RJP_0002 trxA; thioredoxin K03671 TXN; thioredoxin
D RJP_0211 grxC1; glutaredoxin, grxC family K03676 grxC; glutaredoxin 3
D RJP_0847 grxC2; glutaredoxin-like protein grla K07390 grxD; monothiol glutaredoxin
C 04131 Membrane trafficking [BR:rja04131]
D RJP_0055 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RJP_0956 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:rja03051]
D RJP_0956 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:rja03032]
D RJP_0824 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RJP_0177 hupA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D RJP_0813 himA; integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
D RJP_0712 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein
D RJP_0596 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RJP_0978 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RJP_0950 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RJP_0891 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RJP_0450 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RJP_0996 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RJP_0196 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RJP_0178 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RJP_0829 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RJP_0985 dnaX; DNA polymerase III subunits gamma and tau chains K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RJP_0209 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RJP_0819 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RJP_0213 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RJP_0659 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RJP_0071 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RJP_0241 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RJP_0350 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:rja03036]
D RJP_0120 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RJP_0177 hupA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D RJP_0813 himA; integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
D RJP_0712 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein
D RJP_0266 ftsA; cell division protein ftsA K03590 ftsA; cell division protein FtsA
D RJP_0628 pbpA2; penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RJP_0934 ftsK; cell division protein ftsK homolog K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D RJP_0629 cell division protein ftsL K03586 ftsL; cell division protein FtsL
D RJP_0265 ftsQ; cell division protein ftsQ K03589 ftsQ; cell division protein FtsQ
D RJP_0440 ftsW; cell division protein ftsW K03588 ftsW; cell division protein FtsW
D RJP_0770 ftsZ; cell division protein ftsZ K03531 ftsZ; cell division protein FtsZ
D RJP_0221 n2B; putative ATPase n2B K06916 zapE; cell division protein ZapE
D RJP_0882 mreB; rod shape-determining protein mreB K03569 mreB; rod shape-determining protein MreB and related proteins
D RJP_0881 mreC; rod shape-determining protein mreC K03570 mreC; rod shape-determining protein MreC
D RJP_0298 rodA; rod shape-determining protein rodA K05837 rodA; rod shape determining protein RodA
D RJP_0147 chromosome partitioning protein-like protein K03496 parA; chromosome partitioning protein
D RJP_0058 soj; ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D RJP_0059 spo0J; parB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RJP_0071 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RJP_0241 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RJP_0056 gidA; glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RJP_0057 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RJP_0928 xerC; tyrosine recombinase K03733 xerC; integrase/recombinase XerC
D RJP_0387 xerD; tyrosine recombinase xerD K04763 xerD; integrase/recombinase XerD
D RJP_0125 mrp; mrp protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RJP_0105 GTP-binding protein K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:rja03400]
D RJP_0377 mpg; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D RJP_0848 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RJP_0430 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RJP_0962 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D RJP_0785 mutM; formamidopyrimidine-DNA glycosidase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RJP_0276 xth1; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RJP_0780 xthA2; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RJP_0530 recJ; single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RJP_0819 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RJP_0949 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D RJP_0210 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D RJP_0634 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D RJP_0486 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RJP_0143 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RJP_0144 rpoC; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RJP_0737 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RJP_0657 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RJP_0715 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RJP_0318 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS
D RJP_1005 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D RJP_0779 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RJP_0374 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RJP_0891 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RJP_0450 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RJP_0996 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RJP_0196 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RJP_0178 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RJP_0829 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RJP_0985 dnaX; DNA polymerase III subunits gamma and tau chains K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RJP_0950 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RJP_0871 recA; recombinase A K03553 recA; recombination protein RecA
D RJP_0415 ruvA; Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA
D RJP_0417 ruvB; Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RJP_0122 ruvC; crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RJP_0594 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RJP_0602 radA; DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms
D RJP_0026 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF
D RJP_0722 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RJP_0604 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
D RJP_0473 recR; recombination protein recR K06187 recR; recombination protein RecR
D RJP_0188 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
D RJP_0831 ATP-dependent helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D RJP_0434 recB family exonuclease K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D RJP_0213 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RJP_0659 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RJP_0350 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RJP_0177 hupA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D RJP_0813 himA; integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
D RJP_0497 nrdA; ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RJP_0498 nrdF; ribonucleotide-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:rja03029]
D RJP_0288 petB; cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D RJP_0608 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RJP_0527 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RJP_0088 tsf; Elongation factor Ts K02357 tsf; elongation factor Ts
D RJP_0763 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RJP_0135 fusA; elongation factor EF-2 K02355 fusA; elongation factor G
D RJP_0121 era; GTP-binding protein era K03595 era; GTPase
D RJP_0613 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RJP_0452 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RJP_0149 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RJP_0069 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RJP_0156 gatA; glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RJP_0155 gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RJP_0157 gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RJP_0950 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RJP_0166 omp1; outer membrane protein omp1 K07277 SAM50; outer membrane protein insertion porin family
D RJP_0191 dnaK; molecular chaperone dnaK K04043 dnaK; molecular chaperone DnaK
D RJP_0673 grpE; grpE protein K03687 GRPE; molecular chaperone GrpE
D RJP_0676 groEL; chaperonin groEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RJP_0675 groES; co-chaperonin groES K04078 groES; chaperonin GroES
D RJP_0190 dnaJ; dnaJ protein K03686 dnaJ; molecular chaperone DnaJ
D RJP_0584 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RJP_0585 spl1; nifs protein homolog K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RJP_0208 hscB; co-chaperone hscB K04082 hscB; molecular chaperone HscB
D RJP_0847 grxC2; glutaredoxin-like protein grla K07390 grxD; monothiol glutaredoxin
D RJP_0771 nifU-like domain K22074 NFU1; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
D RJP_0044 hypothetical protein K18164 NDUFAF7; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
D RJP_0125 mrp; mrp protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RJP_0368 ctaB; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RJP_0324 cox11; cytochrome C oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D RJP_0273 coxW; cytochrome c oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RJP_0047 yidC; putative inner membrane protein translocase component yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RJP_0830 surf1; surfeit locus protein 1 K14998 SURF1; surfeit locus 1 family protein
D RJP_0029 sco2; sco2 protein precursor K07152 SCO1; protein SCO1
D RJP_0728 sco2; sco2 protein precursor K07152 SCO1; protein SCO1
D RJP_0956 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:rja02000]
D RJP_0418 msbA1; multidrug resistance protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RJP_0801 msbA2; multidrug resistance protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RJP_0225 abcT3; multidrug resistance ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RJP_0338 aprD; alkaline protease secretion ATP-binding protein aprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D RJP_0875 uup; ABC transporter ATP-binding protein uup K15738 uup; ABC transport system ATP-binding/permease protein
D RJP_0822 ABC transporter substrate binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RJP_0098 ABC transporter permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RJP_0099 mkl; ribonucleotide ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RJP_0096 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein
D RJP_0392 ABC-type transport system, periplasmic component K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D RJP_0393 ABC transporter permease protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D RJP_0394 ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D RJP_0154 yqiX; amino acid ABC transporter substrate binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D RJP_0133 yqiY; amino acid ABC transporter permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D RJP_0991 glnQ; glutamine ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D RJP_0013 znuA; zinc/manganese ABC transporter substrate binding protein K09815 znuA; zinc transport system substrate-binding protein
D RJP_0682 znuB; zinc/manganese ABC transporter permease protein K09816 znuB; zinc transport system permease protein
D RJP_0945 znuC; zinc ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D RJP_0521 bioY; bioY family protein K03523 bioY; biotin transport system substrate-specific component
D RJP_0004 rfbA; O-antigen export system permease protein rfbA K09690 wzm; homopolymeric O-antigen transport system permease protein
D RJP_0003 rfbE; O-antigen export system ATP-binding protein rfbE K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D RJP_0995 putative permeases K07091 lptF; lipopolysaccharide export system permease protein
D RJP_0883 putative permeases K11720 lptG; lipopolysaccharide export system permease protein
D RJP_0502 abcT2; ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RJP_0804 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D RJP_0805 lolD; lipoprotein releasing system ATP-binding protein lolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RJP_0941 ccmC; heme exporter protein C K02195 ccmC; heme exporter protein C
D RJP_0285 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B
D RJP_0905 ccmA; heme exporter protein A K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D RJP_0971 proP1; proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D RJP_1006 proP7; proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D RJP_0404 proP3; proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D RJP_0054 glpT; sugar phosphate permease K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D RJP_0419 ampG4; ampG protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RJP_0573 ampG1; ampG protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RJP_0803 bcr2; bicyclomycin resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RJP_0708 bicyclomycin resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RJP_0162 emrB; multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D RJP_0519 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RJP_0046 hypothetical protein K16053 ybdG; miniconductance mechanosensitive channel
D RJP_0662 mgtE; magnesium transporter K06213 mgtE; magnesium transporter
D RJP_0332 tolQ; tolQ protein K03562 tolQ; biopolymer transport protein TolQ
D RJP_0333 tolR; tolR protein K03560 tolR; biopolymer transport protein TolR
D RJP_0697 corA; magnesium and cobalt transport protein corA K03284 corA; magnesium transporter
D RJP_0807 hemolysin-like protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RJP_0238 tolC; type I secretion outer membrane protein tolC K12340 tolC; outer membrane protein
D RJP_0166 omp1; outer membrane protein omp1 K07277 SAM50; outer membrane protein insertion porin family
D RJP_0189 comL; hypothetical protein K05807 bamD; outer membrane protein assembly factor BamD
D RJP_0503 hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA
D RJP_0504 hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC
D RJP_0778 ostA; organic solvent tolerance protein homolog K04744 lptD; LPS-assembly protein
D RJP_0842 tlyC; hemolysin C K06189 corC; hemolysin (HlyC) family protein
D RJP_0943 p34; cation diffusion facilitator family transporter K13283 fieF; ferrous-iron efflux pump FieF
D RJP_0080 sam; S-adenosylmethionine transporter K15270 sam; S-adenosylmethionine uptake transporter
D RJP_0921 kefB; glutathione-regulated potassium-efflux system protein kefB K03455 KEA1_2_3; K+:H+ antiporter
D RJP_0284 mnhB; multisubunit Na+/H+ antiporter, mnhB subunit K05566 mnhB; multicomponent Na+:H+ antiporter subunit B
D RJP_0305 mnhC; hypothetical protein K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D RJP_0300 nuoL3; NADH dehydrogenase subunit N K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D RJP_0303 nuoL2; NADH dehydrogenase I chain L K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D RJP_0304 nuoN2; NADH:ubiquinone oxidoreductase subunit 2 (chain N) K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D RJP_0161 multisubunit Na+/H+ antiporter, mnhE subunit K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D RJP_0283 putative monovalent cation/proton antiporter, mnhG/phaG subunit K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D RJP_0725 mviN; integral membrane protein mviN K03980 murJ; putative peptidoglycan lipid II flippase
D RJP_0400 putative permease K13936 mdcF; malonate transporter and related proteins
D RJP_0479 putative permease K24180 mleP; malate permease and related proteins
D RJP_0572 lysE; lysine efflux permease K06895 lysE; L-lysine exporter family protein LysE/ArgO
D RJP_0440 ftsW; cell division protein ftsW K03588 ftsW; cell division protein FtsW
D RJP_0424 FTR1 family protein K07243 FTR; high-affinity iron transporter
D RJP_0885 pal; peptidoglycan-associated lipoprotein precursor K03640 pal; peptidoglycan-associated lipoprotein
D RJP_0322 tolB; translocation protein tolB precursor K03641 tolB; TolB protein
D RJP_0257 emrA; multidrug resistance protein A K03543 emrA; membrane fusion protein, multidrug efflux system
D RJP_0337 aprE; alkaline protease secretion protein aprE K12537 hasE; membrane fusion protein, type I secretion system
D RJP_0850 hypothetical protein K16348 ecnB; entericidin B
D RJP_0808 ccmF; cytochrome c-type biogenesis protein ccmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
C 02044 Secretion system [BR:rja02044]
D RJP_0238 tolC; type I secretion outer membrane protein tolC K12340 tolC; outer membrane protein
D RJP_0338 aprD; alkaline protease secretion ATP-binding protein aprD K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D RJP_0337 aprE; alkaline protease secretion protein aprE K12537 hasE; membrane fusion protein, type I secretion system
D RJP_0107 virB3; type IV secretory pathway, virB3-like protein K03198 virB3; type IV secretion system protein VirB3
D RJP_0897 virB4-2; type IV secretion/conjugal transfer ATPase, virB4 family K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RJP_0108 virB4-1; type IV secretion/conjugal transfer ATPase, virB4 family K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RJP_0109 virB6-1; trbL/virB6 plasmid Conjugative transfer protein K03201 virB6; type IV secretion system protein VirB6
D RJP_0110 virB6-2; trbL/virB6 plasmid Conjugative transfer protein K03201 virB6; type IV secretion system protein VirB6
D RJP_0111 virB6-3; trbL/virB6 plasmid Conjugative transfer protein K03201 virB6; type IV secretion system protein VirB6
D RJP_0112 virB6-4; trbL/virB6 plasmid Conjugative transfer protein K03201 virB6; type IV secretion system protein VirB6
D RJP_0307 virB8-1; virB8 protein K03203 virB8; type IV secretion system protein VirB8
D RJP_0308 virB8-2; virB8 protein K03203 virB8; type IV secretion system protein VirB8
D RJP_0306 virB9-1; virB9 protein K03204 virB9; type IV secretion system protein VirB9
D RJP_0309 virB9-2; virB9 protein precursor K03204 virB9; type IV secretion system protein VirB9
D RJP_0310 virB10; virB10 protein K03195 virB10; type IV secretion system protein VirB10
D RJP_0311 virB11; virB11 protein K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D RJP_0312 virD4; virD4 protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D RJP_0496 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RJP_0654 secA; preprotein translocase secA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RJP_0074 secB; export protein secB K03071 secB; preprotein translocase subunit SecB
D RJP_0729 secD; protein export protein secD K03072 secD; preprotein translocase subunit SecD
D RJP_0137 secE; translocase K03073 secE; preprotein translocase subunit SecE
D RJP_0117 secF; protein export protein secF K03074 secF; preprotein translocase subunit SecF
D RJP_0084 secG; protein-export membrane protein secG K03075 secG; preprotein translocase subunit SecG
D RJP_0741 secY; preprotein translocase secY K03076 secY; preprotein translocase subunit SecY
D RJP_0179 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RJP_0889 ftsY; signal recognition particle-docking protein ftsY K03110 ftsY; fused signal recognition particle receptor
D RJP_0730 yajC; preprotein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D RJP_0047 yidC; putative inner membrane protein translocase component yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RJP_0854 twin argininte translocase protein A K03116 tatA; sec-independent protein translocase protein TatA
D RJP_0895 tatC; sec-independent protein translocase protein tatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:rja02042]
D RJP_0807 hemolysin-like protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:rja02022]
D RJP_0457 envZ; osmolarity sensor protein envZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D RJP_0458 ompR; petR protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D RJP_0695 ntrY; nitrogen regulation protein ntrY K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D RJP_0622 ntrX; nitrogen assimilation regulatory protein ntrX K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D RJP_0243 barA; histidine kinase sensor protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D RJP_0251 pleD; regulatory components of sensory transduction system K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65]
D RJP_0075 czcR; transcriptional activator protein czcR K13584 ctrA; two-component system, cell cycle response regulator CtrA
C 02035 Bacterial motility proteins [BR:rja02035]
D RJP_0496 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:rja04812]
D RJP_0882 mreB; rod shape-determining protein mreB K03569 mreB; rod shape-determining protein MreB and related proteins
D RJP_0770 ftsZ; cell division protein ftsZ K03531 ftsZ; cell division protein FtsZ
D RJP_0266 ftsA; cell division protein ftsA K03590 ftsA; cell division protein FtsA
D RJP_0147 chromosome partitioning protein-like protein K03496 parA; chromosome partitioning protein
D RJP_0058 soj; ATPase involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D RJP_0059 spo0J; parB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:rja04147]
D RJP_0956 htpG; heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
D RJP_0351 tdpX1; thioredoxin peroxidase 1 K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D RJP_0676 groEL; chaperonin groEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RJP_0191 dnaK; molecular chaperone dnaK K04043 dnaK; molecular chaperone DnaK
D RJP_0763 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RJP_0340 pkcI; protein kinase C inhibitor 1 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RJP_0837 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RJP_0740 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RJP_0513 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RJP_0592 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RJP_0556 lpdA2; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RJP_0916 pdhD; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 02048 Prokaryotic defense system [BR:rja02048]
D RJP_0006 hypothetical protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D RJP_0732 putative antitoxin of toxin-antitoxin (TA) system K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D RJP_0990 antitoxin of toxin-antitoxin system stbD K18923 stbD; antitoxin StbD
D RJP_0994 dinJ; DNA-damage-inducible protein J K07473 dinJ; DNA-damage-inducible protein J
D RJP_0092 putative toxin of toxin-antitoxin (TA) system K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D RJP_0230 putative toxin of toxin-antitoxin (TA) system K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D RJP_0093 antitoxin of toxin-antitoxin (TA) system stbD K19159 yefM; antitoxin YefM
D RJP_0229 antitoxin of toxin-antitoxin (TA) system stbD K19159 yefM; antitoxin YefM
D RJP_0969 putative antitoxin of toxin-antitoxin (TA) system K19165 phd; antitoxin Phd
D RJP_0968 vapC3; toxin of toxin-antitoxin K07062 fitB; toxin FitB [EC:3.1.-.-]
D RJP_0770 ftsZ; cell division protein ftsZ K03531 ftsZ; cell division protein FtsZ
D RJP_0882 mreB; rod shape-determining protein mreB K03569 mreB; rod shape-determining protein MreB and related proteins
D RJP_0071 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RJP_0241 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RJP_0349 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RJP_0680 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RJP_0714 hypothetical protein K09159 cptB; antitoxin CptB
D RJP_0584 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RJP_0585 spl1; nifs protein homolog K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:rja01504]
D RJP_0238 tolC; type I secretion outer membrane protein tolC K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:rja03100]
D RJP_0545 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RJP_0652 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RJP_0577 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RJP_0616 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RJP_0954 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RJP_0294 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RJP_0490 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RJP_0386 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RJP_0578 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RJP_0016 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RJP_0733 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RJP_0764 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RJP_0800 tRNA-His K14226 tRNA-His; tRNA His
D RJP_0410 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RJP_0997 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RJP_0775 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RJP_0661 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RJP_0409 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RJP_0884 tRNA-Met K14230 tRNA-Met; tRNA Met
D RJP_0249 tRNA-Met K14230 tRNA-Met; tRNA Met
D RJP_0104 tRNA-Met K14230 tRNA-Met; tRNA Met
D RJP_0010 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RJP_0924 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RJP_0564 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RJP_0835 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RJP_0548 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RJP_0165 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RJP_0083 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RJP_1002 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RJP_0136 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RJP_0765 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RJP_0734 tRNA-Val K14237 tRNA-Val; tRNA Val
D RJP_0540 tRNA-Val K14237 tRNA-Val; tRNA Val
D RJP_0696 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RJP_0219 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RJP_0220 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RJP_0984 signal recognition particle RNA (4.5S RNA) K01983 ffs; SRP RNA
D RJP_0518 RNA subunit (M1 RNA) of ribonuclease P K01978 rnpB; M1 RNA
D RJP_0826 tmRNA K15035 ssrA; transfer-messenger RNA
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A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D RJP_0815 bcp; bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D RJP_0390 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D RJP_0045 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D RJP_0001 hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D RJP_0787 tatD; putative deoxyribonuclease tatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D RJP_0391 ampD1; ampD protein homolog K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RJP_0052 def3; polypeptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RJP_0216 def; polypeptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RJP_0515 def2; polypeptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D RJP_0940 fdxA; ferredoxin K05524 fdxA; ferredoxin
D RJP_0583 iscU; FeS cluster assembly scaffold iscU K04488 iscU; nitrogen fixation protein NifU and related proteins
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
D RJP_0783 ubiB; 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D RJP_0693 hypothetical protein K18587 COQ9; ubiquinone biosynthesis protein COQ9
D RJP_0172 hypothetical protein K18588 COQ10; coenzyme Q-binding protein COQ10
C 99988 Secondary metabolism
C 99999 Others
D RJP_0846 serine esterase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D RJP_0774 cspA; cold shock-like protein K03704 cspA; cold shock protein
C 99974 Translation
C 99975 Protein processing
D RJP_0959 tig; trigger factor K03545 tig; trigger factor
D RJP_0461 smpB; tmRNA-binding protein K03664 smpB; SsrA-binding protein
C 99976 Replication and repair
D RJP_0795 rmuC family protein K09760 rmuC; DNA recombination protein RmuC
D RJP_0379 excinuclease ABC, C subunit, N-terminal K07461 K07461; putative endonuclease
C 99979 Viral proteins
C 99998 Others
D RJP_0986 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D RJP_0327 atrC1; cationic amino acid transporter-1 K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RJP_0580 potE; putrescine-ornithine antiporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RJP_0176 acrF; hydrophobe/amphiphile efflux-1 (HAE1) family protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D RJP_0053 tlc1; ADP,ATP carrier protein K03301 TC.AAA; ATP:ADP antiporter, AAA family
D RJP_0509 tlc4; ADP,ATP carrier protein K03301 TC.AAA; ATP:ADP antiporter, AAA family
D RJP_0838 tlc5; ATP/ADP translocase K03301 TC.AAA; ATP:ADP antiporter, AAA family
C 99978 Cell growth
D RJP_0423 ispZ; putative intracellular septation protein K06190 ispZ; intracellular septation protein
C 99993 Cell motility
C 99995 Signaling proteins
D RJP_0279 typA; GTP-binding protein typA K06207 typA; GTP-binding protein
C 99992 Structural proteins
D RJP_0095 vacJ; vacJ lipoprotein precursor K04754 mlaA; phospholipid-binding lipoprotein MlaA
D RJP_0079 ompW; ompW family outer-membrane protein K07275 ompW; outer membrane protein
D RJP_0727 ccmE; cytochrome c-type biogenesis protein ccmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
C 99994 Others
D RJP_0183 cutA; periplasmic divalent cation tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein
D RJP_0347 cyaY; frataxin-like protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY
B
B 09194 Poorly characterized
C 99996 General function prediction only
D RJP_0512 rbn; putative ribonuclease BN K07058 K07058; membrane protein
D RJP_0129 hypothetical protein K07146 K07146; UPF0176 protein
C 99997 Function unknown
D RJP_0240 ankyrin repeat K06867 K06867; uncharacterized protein
D RJP_0223 ankyrin repeat K06867 K06867; uncharacterized protein
D RJP_0396 hypothetical protein K06867 K06867; uncharacterized protein
D RJP_0364 putative hydrolase/acyltransferase K06889 K06889; uncharacterized protein
D RJP_0151 Integral membrane protein K06890 K06890; uncharacterized protein
D RJP_0568 putative hydrolase K07018 K07018; uncharacterized protein
D RJP_0204 imp; hypothetical protein K07080 K07080; uncharacterized protein
D RJP_0878 putative AAA+ superfamily ATPase K07133 K07133; uncharacterized protein
D RJP_0955 hypothetical protein K09131 K09131; uncharacterized protein
D RJP_0175 hypothetical protein K09779 K09779; uncharacterized protein
D RJP_0537 hypothetical protein K09861 K09861; uncharacterized protein
D RJP_0825 hypothetical protein K09985 K09985; uncharacterized protein
D RJP_0077 hypothetical protein K09987 K09987; uncharacterized protein
D RJP_0239 hypothetical protein K09991 K09991; uncharacterized protein
D RJP_0124 putative nucleoside-diphosphate-sugar epimerase K07276 K07276; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 20, 2024