+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Rhinichthys klamathensis goyatoka (western speckled dace)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 130088021 rnmt; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 130082605 rngtt; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 130072471 cdk7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 130090530 cmtr1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 isoform X1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 130102594 cmtr2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
D Cap binding complex
E 130072502 nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 130075382 ncbp2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 130088475 nudt21; cleavage and polyadenylation specificity factor subunit 5 isoform X1 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 130080004 cpsf6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 130095679 clp1; polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 130096508 pcf11; pre-mRNA cleavage complex 2 protein Pcf11 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 130088002 cpsf1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 130096182 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 130075456 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 130095001 cpsf4; cleavage and polyadenylation specificity factor subunit 4 isoform X1 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 130091748 fip1l1a; pre-mRNA 3'-end-processing factor FIP1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 130071388 fip1l1b; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 130098480 wdr33; pre-mRNA 3' end processing protein WDR33 isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 130087462 wdr82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 130101112 ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit A K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 130073454 ppp1cb; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 130079564 serine/threonine-protein phosphatase PP1-beta catalytic subunit-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 130097247 ppp1caa; protein phosphatase 1, catalytic subunit, alpha isozyme a K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 130082409 ppp1cab; protein phosphatase 1, catalytic subunit, alpha isozyme b K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 130072723 ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 130085575 cstf1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 130103956 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 130069956 cstf3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 130082466 sympk; symplekin isoform X1 K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 130077336 snrpb; small nuclear ribonucleoprotein-associated proteins B and B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 130072379 snrpd3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 130091300 snrpf; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 130090514 snrpg; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 130077361 lsm10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 130095147 lsm11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 130096182 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 130075456 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 130103956 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 130082466 sympk; symplekin isoform X1 K06100 SYMPK; symplekin
E 130077744 slbp; histone RNA hairpin-binding protein K18710 SLBP; histone RNA hairpin-binding protein
E 130095591 slbp2; stem-loop binding protein 2 K18710 SLBP; histone RNA hairpin-binding protein
E 130091775 casp8ap2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 130076208 supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 130096705 supt5h; transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 130077569 mettl3; N6-adenosine-methyltransferase subunit METTL3 isoform X1 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 130089529 mettl14; LOW QUALITY PROTEIN: N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 130090460 mettl4; N(6)-adenine-specific methyltransferase METTL4 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 130096792 mettl16; RNA N6-adenosine-methyltransferase mettl16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 130075469 wtap; pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 130101934 virma; protein virilizer homolog isoform X1 K22910 VIRMA; protein virilizer
E 130093639 rbm15b; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 130094618 rbm15; RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 130087830 zc3h13; zinc finger CCCH domain-containing protein 13 isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 130085380 E3 ubiquitin-protein ligase Hakai isoform X1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
E 130072279 cbll1; E3 ubiquitin-protein ligase Hakai isoform X1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 130089625 papolg; poly(A) polymerase gamma isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 130096011 papola; poly(A) polymerase alpha isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 130072521 tent2; poly(A) RNA polymerase GLD2 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 130080482 tut1; speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 130072592 bard1; LOW QUALITY PROTEIN: BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 130076464 rbm26; RNA-binding protein 26 isoform X1 K13192 RBM26; RNA-binding protein 26
E 130099613 fto; alpha-ketoglutarate-dependent dioxygenase FTO K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 130091061 alkbh5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 130074127 tardbpa; TAR DNA binding protein, like isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
E 130089095 tardbpb; TAR DNA-binding protein 43 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 130077851 dhx40; probable ATP-dependent RNA helicase DHX40 isoform X1 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 130092558 kin; DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17
D 130102870 mettl8; mRNA N(3)-methylcytidine methyltransferase METTL8 isoform X1 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 130090686 mettl22; methyltransferase-like protein 22 isoform X1 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 130073486 tent5ba; terminal nucleotidyltransferase 5ba K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 130090697 tent5aa; terminal nucleotidyltransferase 5A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 130076261 tent5ab; terminal nucleotidyltransferase 5Ab K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 130076467 tent5c; terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 130103002 zc3h14; zinc finger CCCH domain-containing protein 14 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 130077408 srrt; serrate RNA effector molecule homolog K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 130077684 rbm8a; RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A
E 130086105 magoh; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 130085240 alyref; THO complex subunit 4 isoform X1 K12881 THOC4; THO complex subunit 4
E 130087926 ddx39b; DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 130078641 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 130087508 ccdc174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 130070272 casc3; protein CASC3 isoform X1 K14323 CASC3; protein CASC3
E 130076324 sap18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 130102664 acin1b; apoptotic chromatin condensation inducer 1b K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 130076185 acin1a; apoptotic chromatin condensation inducer in the nucleus isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 130070996 rnps1; RNA-binding protein with serine-rich domain 1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 130097510 srrm1; serine/arginine repetitive matrix protein 1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 130099161 thoc1; THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 130099490 thoc2; THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2
E 130084866 thoc3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 130085240 alyref; THO complex subunit 4 isoform X1 K12881 THOC4; THO complex subunit 4
E 130106487 thoc5; THO complex subunit 5 homolog isoform X1 K13174 THOC5; THO complex subunit 5
E 130088479 thoc6; THO complex subunit 6 homolog K13175 THOC6; THO complex subunit 6
E 130075953 thoc7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 130082213 pcid2; PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 130084211 sem1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 130090790 eny2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 130099480 cetn2; centrin-1 K10840 CETN2; centrin-2
E 130096622 mcm3ap; germinal-center associated nuclear protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 130103283 tprb; translocated promoter region b, nuclear basket protein K09291 TPR; nucleoprotein TPR
E 130079419 tpra; nucleoprotein TPR K09291 TPR; nucleoprotein TPR
E 130094325 sec13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 130072269 nup37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 130106321 nup85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85
E 130080566 nup43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 130092493 nup50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 130076776 nup62l; nucleoporin 62 like isoform X1 K14306 NUP62; nuclear pore complex protein Nup62
E 130086732 nup88; nucleoporin 88 K14318 NUP88; nuclear pore complex protein Nup88
E 130094723 nup93; nuclear pore complex protein Nup93 isoform X1 K14309 NUP93; nuclear pore complex protein Nup93
E 130095411 nup98; nuclear pore complex protein Nup98-Nup96 isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 130082673 nup107; nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 130070055 nup133; nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133
E 130100602 nup188; nucleoporin NUP188 K14311 NUP188; nuclear pore complex protein Nup188
E 130076307 nup153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153
E 130094882 nup155; nuclear pore complex protein Nup155 isoform X1 K14312 NUP155; nuclear pore complex protein Nup155
E 130085981 nup160; nuclear pore complex protein Nup160 isoform X1 K14303 NUP160; nuclear pore complex protein Nup160
E 130076752 nup35; nucleoporin NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 130094842 nup205; nuclear pore complex protein Nup205 isoform X1 K14310 NUP205; nuclear pore complex protein Nup205
E 130079426 nup210; nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210
E 130078272 nup214; nuclear pore complex protein Nup214 K14317 NUP214; nuclear pore complex protein Nup214
E 130074089 pom121; nuclear envelope pore membrane protein POM 121 isoform X1 K14316 POM121; nuclear pore complex protein Nup121
E 130083946 nup58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 130092393 nup42; nucleoporin NUP42 isoform X1 K14321 NUPL2; nucleoporin-like protein 2
E 130076056 ndc1; nucleoporin NDC1 isoform X1 K14315 NDC1; nucleoporin NDC1
E 130077502 nucleoporin SEH1-like K14299 SEH1; nucleoporin SEH1
E 130088019 seh1l; nucleoporin SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1
E 130068942 E3 SUMO-protein ligase RanBP2-like isoform X1 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 130068968 E3 SUMO-protein ligase RanBP2-like K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 130068969 E3 SUMO-protein ligase RanBP2-like K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 130101252 senp2; sentrin-specific protease 2 isoform X1 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 130068957 aaas; aladin K14320 AAAS; aladin
E 130073991 nxf1b; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 130084735 nxf1a; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 130075593 nxt2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 130084787 ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 130082982 anp32a; acidic leucine-rich nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 130099447 anp32b; acidic leucine-rich nuclear phosphoprotein 32 family member B K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 130082544 tnfsf13; tumor necrosis factor ligand superfamily member 13 isoform X1 K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 130086584 elavl1b; ELAV-like protein 1b isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 130071530 elavl1a; ELAV-like protein 1a isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 130101980 elavl2; ELAV-like protein 2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 130091617 elavl4; ELAV-like protein 4 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 130086778 elavl3; ELAV-like protein 3 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 130079587 ELAV-like protein 2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 130095653 faf2; FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2
E 130103697 vcp; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 130080220 vcpkmt; protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 130105804 tnpo2a; transportin-2 isoform X1 K18727 TNPO2; transportin-2
E 130070042 tnpo2b; transportin-2 K18727 TNPO2; transportin-2
E 130097446 xpo1b; exportin-1 isoform X1 K14290 XPO1; exportin-1
E 130082968 xpo7; exportin-7 K18460 XPO7; exportin-7
E 130088612 rangap1b; ran GTPase-activating protein 1b isoform X1 K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 130083115 eif4e1c; eukaryotic translation initiation factor 4E family member 1c isoform X1 K03259 EIF4E; translation initiation factor 4E
E 130102907 eif4eb; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4eb K03259 EIF4E; translation initiation factor 4E
E 130075939 eif4ea; eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 130092400 eif4e2; eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 130105724 eif4e2rs1; eukaryotic translation initiation factor 4E family member 2 related sequence 1 K03259 EIF4E; translation initiation factor 4E
E 130082443 eif4e1b; eukaryotic translation initiation factor 4E-1B K03259 EIF4E; translation initiation factor 4E
E 130102582 eif4a1a; eukaryotic translation initiation factor 4A1A isoform X1 K03257 EIF4A; translation initiation factor 4A
E 130097259 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 130071228 eif4a1b; eukaryotic translation initiation factor 4A1B K03257 EIF4A; translation initiation factor 4A
E 130102219 eif4g3b; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 130085574 eif4g3a; eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G
E 130085656 eukaryotic translation initiation factor 4 gamma 1-like isoform X1 K03260 EIF4G; translation initiation factor 4G
E 130094868 eif4g2b; eukaryotic translation initiation factor 4 gamma 2b K03260 EIF4G; translation initiation factor 4G
E 130100356 eif4g2a; eukaryotic translation initiation factor 4 gamma 2a K03260 EIF4G; translation initiation factor 4G
E 130084656 eif4ba; eukaryotic translation initiation factor 4Ba isoform X1 K03258 EIF4B; translation initiation factor 4B
E 130087565 eif4bb; eukaryotic translation initiation factor 4Bb isoform X1 K03258 EIF4B; translation initiation factor 4B
E 130095978 eif4h; eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H
E 130096449 eif4ebp1; eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 130077608 eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 130072485 eif4ebp3l; eukaryotic translation initiation factor 4E-binding protein 3-like K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 130087484 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 130103162 angel2; protein angel homolog 2 K18729 ANGEL; protein angel
E 130071329 angel1; protein angel homolog 1 K18729 ANGEL; protein angel
E 130085452 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 130092620 fxr1; RNA-binding protein FXR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 130070391 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 130090921 cyfip2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 130087582 cyfip1; cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 130095548 gemin5; gem-associated protein 5 K13133 GEMIN5; gem associated protein 5
E 130088274 tacc3; transforming acidic coiled-coil-containing protein 3 isoform X1 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 130083176 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 130073678 cpeb1a; cytoplasmic polyadenylation element-binding protein 1a K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 130101950 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 130075684 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 130084826 cpeb4a; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 130077286 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 130069208 ddx3xa; DEAD-box helicase 3 X-linked a isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 130078049 ddx3xb; DEAD-box helicase 3 X-linked b isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 130082908 gigyf1b; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 130087243 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 130078560 gigyf1a; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 130091542 polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 130091574 polyadenylate-binding protein 1A-like K13126 PABPC; polyadenylate-binding protein
E 130088006 pabpc1b; polyadenylate-binding protein 1b K13126 PABPC; polyadenylate-binding protein
E 130097502 pabpc4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 130081997 pabpc1l; polyadenylate-binding protein 1-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 130088171 paip1; polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 130078753 polyadenylate-binding protein-interacting protein 2B-like isoform X1 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 130076296 paip2b; polyadenylate-binding protein-interacting protein 2B K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 130087934 skic2; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 130106451 deaf1; deformed epidermal autoregulatory factor 1 homolog isoform X1 K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 130090907 mcts1; malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 130094945 denr; density-regulated protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 130080535 a1cf; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 130079455 pym1; partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 130090550 hnrnpa1b; heterogeneous nuclear ribonucleoprotein A1b isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 130086256 hnrnpa1a; heterogeneous nuclear ribonucleoprotein A1a isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 130078490 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 130100873 dazap1; DAZ-associated protein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 130104590 msi2b; RNA-binding protein Musashi homolog 2b isoform X1 K14411 MSI; RNA-binding protein Musashi
E 130105328 msi2a; RNA-binding protein Musashi homolog 2a isoform X1 K14411 MSI; RNA-binding protein Musashi
E 130088198 RNA-binding protein Musashi homolog 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 130081849 msi1b; RNA-binding protein Musashi homolog 1b isoform X1 K14411 MSI; RNA-binding protein Musashi
E 130075274 hbs1l; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 130082408 pelo; protein pelota homolog K06965 PELO; protein pelota
E 130070425 pabpn1l; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 130087680 pabpn1; polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 130090588 ddx19a; ATP-dependent RNA helicase DDX19A K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 130071778 ddx19b; ATP-dependent RNA helicase DDX19B isoform X1 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 130086080 xab2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 130086245 sarnp; SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 130073485 rcc1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 130100843 larp6b; la-related protein 6b K18733 LARP6; la-related protein 6
E 130078443 larp6a; la-related protein 6a K18733 LARP6; la-related protein 6
E 130084748 purab; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 130095308 puraa; purine-rich element binding protein Aa K21772 PURA; transcriptional activator protein Pur-alpha
E 130094931 purbb; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 130088094 purba; purine-rich element binding protein Ba K21799 PURB; transcriptional activator protein Pur-beta
E 130105980 poldip3; polymerase delta-interacting protein 3 isoform X1 K22414 POLDIP3; polymerase delta-interacting protein 3
E 130103600 zc3h11a; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 130103651 leng8; leukocyte receptor cluster member 8 homolog isoform X1 K23802 LENG8; SAC3 family protein LENG8/THP3
E 130082403 patl2; protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 130082941 etf1b; eukaryotic peptide chain release factor subunit 1b isoform X1 K03265 ETF1; peptide chain release factor subunit 1
E 130086551 etf1a; eukaryotic peptide chain release factor subunit 1-like K03265 ETF1; peptide chain release factor subunit 1
E 130075868 gspt1l; G1 to S phase transition 1, like K03267 ERF3; peptide chain release factor subunit 3
E 130088593 gspt1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 130075336 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 130080076 upf2; regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2
E 130072987 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 130069245 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 130077501 ppp2cab; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 130095675 ppp2caa; protein phosphatase 2 catalytic subunit alpha a K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 130099760 ppp2cb; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 130086756 ppp2r1ba; protein phosphatase 2, regulatory subunit A, beta a K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 130096714 ppp2r1bb; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 130072497 ppp2r2ba; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 130090629 ppp2r2d; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 130084774 ppp2r2cb; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 130095495 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 130087068 ppp2r2ab; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 130071383 ppp2r2ca; protein phosphatase 2, regulatory subunit B, gamma a K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 130069234 ppp2r3b; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 130070893 ppp2r3a; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 130084507 ppp2r5d; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 130102710 ppp2r5b; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 130096034 ppp2r5a; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 130088230 ppp2r5eb; protein phosphatase 2, regulatory subunit B', epsilon K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 130097561 ppp2r5ea; protein phosphatase 2, regulatory subunit B', epsilon K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 130071828 ppp2r5ca; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 130082328 ppp2r5cb; protein phosphatase 2, regulatory subunit B', gamma b isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 130097233 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 130079557 nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5
E 130074124 smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 130071538 smg7; LOW QUALITY PROTEIN: nonsense-mediated mRNA decay factor SMG7 K14409 SMG7; protein SMG7
E 130074092 smg8; LOW QUALITY PROTEIN: nonsense-mediated mRNA decay factor SMG8 K18734 SMG8; protein SMG8
E 130101911 smg9; nonsense-mediated mRNA decay factor SMG9 K18735 SMG9; protein SMG9
E 130082908 gigyf1b; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 130087243 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 130078560 gigyf1a; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 130078794 selenocysteine insertion sequence-binding protein 2-like K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 130072272 selenocysteine insertion sequence-binding protein 2-like K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 130069941 dhx34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 130088414 gtpbp1; GTP-binding protein 1 isoform X1 K24887 GTPBP1; GTP-binding protein 1
E 130089328 gtpbp1l; GTP binding protein 1, like K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 130076565 pum3; pumilio homolog 3 isoform X1 K14844 PUF6; pumilio homology domain family member 6
E 130073658 myo5ab; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 130106447 myo5c; unconventional myosin-Vc K10357 MYO5; myosin V
E 130096491 myo5b; unconventional myosin-Vb K10357 MYO5; myosin V
E 130089199 si:dkey-110c1.10; unconventional myosin-Vb K10357 MYO5; myosin V
E 130089401 myo5aa; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 130094844 bicd1a; protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D
E 130106397 bicd2; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 130080043 protein bicaudal D homolog 1-like isoform X1 K18739 BICD; protein bicaudal D
E 130081922 zgc:162200; protein bicaudal D homolog 2 K18739 BICD; protein bicaudal D
E 130082150 zgc:171572; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 130082691 exd1; piRNA biogenesis protein EXD1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 130091060 actb1; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 130095006 actb2; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 130085131 mbpa; myelin basic protein isoform X1 K17269 MBP; myelin basic protein
E 130078243 myelin basic protein-like K17269 MBP; myelin basic protein
E 130084089 vim; vimentin K07606 VIM; vimentin
E 130087198 viml; vimentin like K07606 VIM; vimentin
E 130088049 vimentin isoform X1 K07606 VIM; vimentin
E 130101529 mtbl; metallothionein-B-like K14739 MT1_2; metallothionein 1/2
E 130094735 mt2; metallothionein-2 K14739 MT1_2; metallothionein 1/2
E 130101734 mycb; transcriptional regulator Myc-B K04377 MYC; Myc proto-oncogene protein
E 130087718 myca; transcriptional regulator Myc-A isoform X1 K04377 MYC; Myc proto-oncogene protein
E 130080613 tbx6; T-box transcription factor TBX6 K10180 TBX6; T-box protein 6
E 130082106 tbx16; T-box transcription factor 16 K10180 TBX6; T-box protein 6
E 130072975 nanos2; nanos homolog 1 K18741 NANOS1; protein nanos 1
E 130084721 nanos1; nanos homolog 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 130076122 khsrp; far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein
E 130088382 fubp3; far upstream element-binding protein 3 isoform X1 K13210 FUBP; far upstream element-binding protein
E 130097385 fubp1; far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 130084252 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 130084254 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 130076399 eef1a2; elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha
E 130087723 eef1a1l3; elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 130087863 eef1a1b; LOW QUALITY PROTEIN: elongation factor 1-alpha 1b K03231 EEF1A; elongation factor 1-alpha
E 130072063 eef1a1a; elongation factor 1-alpha 1a isoform X1 K03231 EEF1A; elongation factor 1-alpha
E 130084862 eef1g; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 130102348 hax1; HCLS1-associated protein X-1 isoform X1 K16220 HAX1; HCLS1-associated protein X-1
E 130089607 agfg1b; arf-GAP domain and FG repeat-containing protein 1b isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 130091446 agfg2; arf-GAP domain and FG repeat-containing protein 2 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 130077900 agfg1a; arf-GAP domain and FG repeat-containing protein 1a isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 130087692 stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 130089087 stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 130076039 ptbp1a; polypyrimidine tract-binding protein 1a K13218 PTBP1; polypyrimidine tract-binding protein 1
E 130086600 ptbp1b; polypyrimidine tract-binding protein 1b isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 130083176 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 130073678 cpeb1a; cytoplasmic polyadenylation element-binding protein 1a K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 130101950 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 130075684 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 130084826 cpeb4a; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 130077286 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 130085452 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 130092620 fxr1; RNA-binding protein FXR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 130070391 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 130090921 cyfip2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 130087582 cyfip1; cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 130083622 pcbp2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 130083133 zgc:110045; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 130093655 pcbp4; poly(rC)-binding protein 4 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 130069633 poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 130100285 pcbp3; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 130102579 caprin1a; caprin-1a isoform X1 K18743 CAPRIN1; caprin-1
E 130089005 caprin1b; caprin-1b K18743 CAPRIN1; caprin-1
E 130071142 caprin2; caprin-2 isoform X1 K18744 CAPRIN2; caprin-2
E 130082019 ybx1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 130084312 ago2; protein argonaute-2 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 130077885 ago1; protein argonaute-1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 130077886 protein argonaute-3 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 130097388 ago3b; protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 130083115 eif4e1c; eukaryotic translation initiation factor 4E family member 1c isoform X1 K03259 EIF4E; translation initiation factor 4E
E 130102907 eif4eb; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4eb K03259 EIF4E; translation initiation factor 4E
E 130075939 eif4ea; eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 130092400 eif4e2; eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 130105724 eif4e2rs1; eukaryotic translation initiation factor 4E family member 2 related sequence 1 K03259 EIF4E; translation initiation factor 4E
E 130082443 eif4e1b; eukaryotic translation initiation factor 4E-1B K03259 EIF4E; translation initiation factor 4E
E 130075336 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 130069208 ddx3xa; DEAD-box helicase 3 X-linked a isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 130078049 ddx3xb; DEAD-box helicase 3 X-linked b isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 130101870 ddx61; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 130097392 probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 130071865 ddx6; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 130091308 mex3b; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 130091564 mex3a; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 130106519 RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 130074003 fastk; fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 130094855 lsm14b; protein LSM14 homolog B isoform X1 K18749 LSM14; protein LSM14
E 130078085 lsm14ab; LSM14A mRNA processing body assembly factor b isoform X1 K18749 LSM14; protein LSM14
E 130080374 lsm14aa; LSM14A mRNA processing body assembly factor a isoform X1 K18749 LSM14; protein LSM14
E 130083622 pcbp2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 130082019 ybx1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 130102606 ajuba; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 130094534 putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 130094535 mov10b.2; putative helicase mov-10-B.2 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 130104160 mov10a; putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 130090895 pnrc2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 130076326 tnpo1; transportin-1 K18752 TNPO1; transportin-1
E 130097233 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 130079557 nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5
E 130074124 smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 130071538 smg7; LOW QUALITY PROTEIN: nonsense-mediated mRNA decay factor SMG7 K14409 SMG7; protein SMG7
E 130095705 zgc:114130; mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 130096064 zfp36l1b; mRNA decay activator protein ZFP36L1b K18753 ZFP36L; butyrate response factor
E 130106388 mRNA decay activator protein ZFP36L2-like isoform X1 K18753 ZFP36L; butyrate response factor
E 130069981 mRNA decay activator protein ZFP36 K18753 ZFP36L; butyrate response factor
E 130080251 zfp36l1a; mRNA decay activator protein ZFP36L1a K18753 ZFP36L; butyrate response factor
E 130088697 zfp36l2; mRNA decay activator protein ZFP36L2 K18753 ZFP36L; butyrate response factor
E 130103173 lin28b; protein lin-28 homolog B K18754 LIN28; protein lin-28
E 130096582 lin28aa; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 130099261 lin28ab; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 130076299 htt; huntingtin isoform X1 K04533 HD; huntingtin
E 130079926 ipo8; importin-8 isoform X1 K18755 IPO8; importin-8
E 130086549 bicc2; bicaudal C homolog 2 K18756 BICC1; protein bicaudal C
E 130070601 bicc1a; protein bicaudal C homolog 1-B isoform X1 K18756 BICC1; protein bicaudal C
E 130080525 bicc1b; protein bicaudal C homolog 1 isoform X1 K18756 BICC1; protein bicaudal C
E 130090550 hnrnpa1b; heterogeneous nuclear ribonucleoprotein A1b isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 130086256 hnrnpa1a; heterogeneous nuclear ribonucleoprotein A1a isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 130078490 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 130069143 prkacaa; protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 130078098 prkacba; protein kinase, cAMP-dependent, catalytic, beta a K04345 PKA; protein kinase A [EC:2.7.11.11]
E 130105831 prkacab; cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 130100399 prkacbb; protein kinase, cAMP-dependent, catalytic, beta b K04345 PKA; protein kinase A [EC:2.7.11.11]
E 130073444 larp1b; la-related protein 1B isoform X1 K18757 LARP1; la-related protein 1
E 130077748 larp1; la-related protein 1 K18757 LARP1; la-related protein 1
E 130075240 atxn2l; ataxin-2-like protein isoform X1 K23625 ATXN2_2L; ataxin 2/2L
E 130103746 atxn2; ataxin-2 isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 130069376 m7GpppN-mRNA hydrolase-like isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 130069379 m7GpppN-mRNA hydrolase-like isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 130082157 dcp1a; mRNA-decapping enzyme 1A isoform X1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 130072309 dcp1b; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 130081977 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 130081308 smx5; smx5 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 130094684 lsm3; snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 130100850 lsm4; U6 snRNA-associated Sm-like protein LSm4 isoform X1 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 130087389 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 130105679 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 130077268 lsm7; U6 snRNA-associated Sm-like protein LSm7 isoform X1 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 130079936 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 130083129 klc1a; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 130090378 klc1b; kinesin light chain 1b isoform X1 K10407 KLC; kinesin light chain
E 130101965 klc4; kinesin light chain 4 isoform X1 K10407 KLC; kinesin light chain
E 130096754 klc3; kinesin light chain 3 K10407 KLC; kinesin light chain
E 130081748 klc2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 130073658 myo5ab; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 130106447 myo5c; unconventional myosin-Vc K10357 MYO5; myosin V
E 130096491 myo5b; unconventional myosin-Vb K10357 MYO5; myosin V
E 130089199 si:dkey-110c1.10; unconventional myosin-Vb K10357 MYO5; myosin V
E 130089401 myo5aa; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 130101223 tuba8l4; tubulin, alpha 8 like 4 K07374 TUBA; tubulin alpha
E 130090538 tubulin alpha-1A chain-like isoform X1 K07374 TUBA; tubulin alpha
E 130090539 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 130101405 si:ch211-114n24.6; tubulin alpha-1D chain K07374 TUBA; tubulin alpha
E 130091008 tuba8l2; tubulin, alpha 8 like 2 K07374 TUBA; tubulin alpha
E 130084542 tubulin alpha-8 chain-like K07374 TUBA; tubulin alpha
E 130084558 tubulin alpha-8 chain-like K07374 TUBA; tubulin alpha
E 130094919 tuba7l; tubulin, alpha 7 like K07374 TUBA; tubulin alpha
E 130069366 tubulin alpha chain, testis-specific-like K07374 TUBA; tubulin alpha
E 130086230 tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 130086231 tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 130078224 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 130078225 tuba8l5; tubulin, alpha 8 like 5 K07374 TUBA; tubulin alpha
E 130071769 tuba5; tubulin alpha 5 K07374 TUBA; tubulin alpha
E 130083176 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 130073678 cpeb1a; cytoplasmic polyadenylation element-binding protein 1a K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 130101950 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 130075684 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 130084826 cpeb4a; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 130077286 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 130095548 gemin5; gem-associated protein 5 K13133 GEMIN5; gem associated protein 5
E 130088274 tacc3; transforming acidic coiled-coil-containing protein 3 isoform X1 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 130075818 trinucleotide repeat-containing gene 6A protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 130088400 tnrc6c1; trinucleotide repeat-containing gene 6C protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 130081202 tnrc6c2; trinucleotide repeat-containing gene 6C protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 130088598 tnrc6ba; trinucleotide repeat-containing gene 6B protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 130085263 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 130104496 cnot2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 130090862 cnot3a; CCR4-NOT transcription complex subunit 3a isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 130097371 cnot3b; CCR4-NOT transcription complex subunit 3b isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 130089910 cnot4b; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 130085387 cnot4a; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 130095382 cnot6a; CCR4-NOT transcription complex subunit 6a K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 130095687 cnot6b; CCR4-NOT transcription complex, subunit 6b K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 130072030 cnot6l; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 130095546 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 130071430 cnot7; CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 130078088 granule associated Rac and RHOG effector protein 1-like K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 130098820 dis3l2; DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 130075423 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 130083882 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 130072764 btg2; protein BTG2 K14443 TOB; protein Tob/BTG
E 130082773 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 130101757 si:dkey-79d12.5; maternal B9.15 protein K14443 TOB; protein Tob/BTG
E 130077263 si:dkey-42i9.4; protein BTG1 K14443 TOB; protein Tob/BTG
E 130086716 btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 130106220 tob1a; protein Tob1a K14443 TOB; protein Tob/BTG
E 130079434 tob1b; protein Tob1b K14443 TOB; protein Tob/BTG
E 130071109 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 130087484 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 130082379 patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 130104427 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 130088329 edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 130080076 upf2; regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2
E 130072987 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 130069245 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 130089804 trim71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 130084876 polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 130068978 eif2ak2; LOW QUALITY PROTEIN: interferon-induced, double-stranded RNA-activated protein kinase K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 130091762 zar1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 130105539 zar1l; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 130083941 ythdf3; YTH domain-containing family protein 3 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 130094662 ythdf1; YTH domain-containing family protein 1 K20102 YTHDF; YTH domain-containing family protein
E 130069914 ythdf2; YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 130089645 tial1; nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 130086774 tia1; nucleolysin TIA-1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 130078504 tia1l; cytotoxic granule-associated RNA binding protein 1, like isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 130091542 polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 130091574 polyadenylate-binding protein 1A-like K13126 PABPC; polyadenylate-binding protein
E 130088006 pabpc1b; polyadenylate-binding protein 1b K13126 PABPC; polyadenylate-binding protein
E 130097502 pabpc4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 130081997 pabpc1l; polyadenylate-binding protein 1-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 130087692 stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 130089087 stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 130085452 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 130092620 fxr1; RNA-binding protein FXR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 130070391 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 130086584 elavl1b; ELAV-like protein 1b isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 130071530 elavl1a; ELAV-like protein 1a isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 130084858 g3bp1; ras GTPase-activating protein-binding protein 1 isoform X1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 130099437 g3bp2a; ras GTPase-activating protein-binding protein 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 130100421 eif2a; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 130095022 eif3ba; eukaryotic translation initiation factor 3, subunit Ba K03253 EIF3B; translation initiation factor 3 subunit B
E 130102582 eif4a1a; eukaryotic translation initiation factor 4A1A isoform X1 K03257 EIF4A; translation initiation factor 4A
E 130097259 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 130071228 eif4a1b; eukaryotic translation initiation factor 4A1B K03257 EIF4A; translation initiation factor 4A
E 130078641 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 130084656 eif4ba; eukaryotic translation initiation factor 4Ba isoform X1 K03258 EIF4B; translation initiation factor 4B
E 130087565 eif4bb; eukaryotic translation initiation factor 4Bb isoform X1 K03258 EIF4B; translation initiation factor 4B
E 130102219 eif4g3b; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 130085574 eif4g3a; eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G
E 130085656 eukaryotic translation initiation factor 4 gamma 1-like isoform X1 K03260 EIF4G; translation initiation factor 4G
E 130094868 eif4g2b; eukaryotic translation initiation factor 4 gamma 2b K03260 EIF4G; translation initiation factor 4G
E 130100356 eif4g2a; eukaryotic translation initiation factor 4 gamma 2a K03260 EIF4G; translation initiation factor 4G
E 130083924 rps6ka3b; ribosomal protein S6 kinase alpha-3 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 130084204 rps6ka2; ribosomal protein S6 kinase alpha-2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 130069874 rps6ka1; ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 130070697 rps6kal; ribosomal protein S6 kinase alpha-6 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 130071246 rps6ka3a; ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 130072494 rack1; guanine nucleotide-binding protein subunit beta-2-like 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 130089827 traf2a; TNF receptor-associated factor 2 isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 130088204 TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 130073991 nxf1b; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 130084735 nxf1a; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 130099535 hdac6; histone deacetylase 6 isoform X1 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 130077706 tdrd3; tudor domain-containing protein 3 isoform X1 K18404 TDRD3; tudor domain-containing protein 3
E 130073392 la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
E 130084018 larp4b; la-related protein 4B K18763 LARP4; la-related protein 4
E 130087545 larp4ab; la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 130082157 dcp1a; mRNA-decapping enzyme 1A isoform X1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 130072309 dcp1b; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 130069376 m7GpppN-mRNA hydrolase-like isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 130069379 m7GpppN-mRNA hydrolase-like isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 130101870 ddx61; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 130097392 probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 130071865 ddx6; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 130104427 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 130088329 edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 130082379 patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 130081977 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 130081308 smx5; smx5 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 130094684 lsm3; snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 130100850 lsm4; U6 snRNA-associated Sm-like protein LSm4 isoform X1 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 130087389 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 130105679 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 130077268 lsm7; U6 snRNA-associated Sm-like protein LSm7 isoform X1 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 130079936 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 130079497 xrn2; 5'-3' exoribonuclease 2 isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 130081669 zgc:103759; U8 snoRNA-decapping enzyme K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 130078689 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 130085556 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 130076125 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 130079884 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 130072528 exosc3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 130100861 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 130089385 exosc5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 130101526 exosc6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 130069026 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 130074088 exosc8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 130089457 exosc9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 130087852 dis3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 130099630 dis3l; DIS3-like exonuclease 1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 130070803 exosc10; exosome component 10 isoform X1 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 130084358 c1d; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 130080393 mphosph6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 130090089 terminal nucleotidyltransferase 4A-like isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 130069740 tent4b; terminal nucleotidyltransferase 4B isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 130087913 tent4a; terminal nucleotidyltransferase 4A isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 130089548 zcchc7; zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 130087130 mtrex; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 130087934 skic2; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 130072752 skic3; tetratricopeptide repeat protein 37 isoform X1 K12600 SKI3; superkiller protein 3
E 130073706 skic8; SKI8 subunit of superkiller complex protein K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 130095382 cnot6a; CCR4-NOT transcription complex subunit 6a K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 130095687 cnot6b; CCR4-NOT transcription complex, subunit 6b K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 130072030 cnot6l; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 130085263 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 130104496 cnot2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 130090862 cnot3a; CCR4-NOT transcription complex subunit 3a isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 130097371 cnot3b; CCR4-NOT transcription complex subunit 3b isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 130089910 cnot4b; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 130085387 cnot4a; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 130095546 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 130071430 cnot7; CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 130100403 cnot9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 130089787 cnot10; CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 130075423 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 130083882 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 130073390 dhx36; ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 130072764 btg2; protein BTG2 K14443 TOB; protein Tob/BTG
E 130082773 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 130101757 si:dkey-79d12.5; maternal B9.15 protein K14443 TOB; protein Tob/BTG
E 130077263 si:dkey-42i9.4; protein BTG1 K14443 TOB; protein Tob/BTG
E 130086716 btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 130106220 tob1a; protein Tob1a K14443 TOB; protein Tob/BTG
E 130079434 tob1b; protein Tob1b K14443 TOB; protein Tob/BTG
E 130071109 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 130089758 nocta; nocturnin K18764 NOCT; nocturnin [EC:3.1.3.108]
E 130071398 noctb; nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 130102307 eri1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 130079443 eri2; LOW QUALITY PROTEIN: ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 130078689 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 130071460 pde12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 130073655 ireb2; iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 130085556 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 130070261 helz2b; helicase with zinc finger domain 2 isoform X1 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 130070381 helz2c; helicase with zinc finger domain 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 130072463 helz2a; helicase with zinc finger domain 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 130073456 nrde2; nuclear exosome regulator NRDE2 K26109 NRDE2; nuclear exosome regulator NRDE2
E 130101431 samd4a; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug
E 130091399 focad; focadhesin K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 130091920 zc3h12b; probable ribonuclease ZC3H12B isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 130085723 endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 130077352 zc3h12ab; ribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 130087732 probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 130087383 drosha; ribonuclease 3 isoform X1 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 130079101 smfn; small fragment nuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 130090426 eno2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 130102134 eno1a; enolase 1a, (alpha) isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 130087511 eno1b; enolase 1b, (alpha) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 130071747 eno3; beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 130090940 polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 130073411 pfkma; phosphofructokinase, muscle a K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 130084462 pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 130105357 pfkla; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 130087245 pfkpb; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 130078642 ATP-dependent 6-phosphofructokinase, liver type-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 130087542 pfkmb; phosphofructokinase, muscle b K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 130070712 hspa9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 130076864 hspd1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 130079884 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 130076125 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 130100861 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 130069026 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024