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Transcription Machinery - Rhizobium johnstonii
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E RL1798 rpoA; putative DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E RL1766 rpoB; putative DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E RL1767 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E RL1505 putative polymerase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E RL3402 rpoD; putative RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E RL4524 rpoE; putative ECF RNA polymerase sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E pRL110007 ecfR; putative ECF sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RL3235 putative RNA polymerase ECF sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RL1473 conserved hypothetical protein with RNA polymerase sigma factor domain K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RL4022 conserved hypothetical protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RL0788 putative ECF sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RL1138 putative ECF sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E pRL120580 putative RNA polymerase ECF-type sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E pRL110418 putative alternative RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RL3563 putative RNA polymerase ECF sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RL3703 rpoZ; putative ECF sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E pRL100385 putative RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RL3509 putative ECF sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E RL4614 putative rpoH sigma factor K03089 rpoH; RNA polymerase sigma-32 factor
E RL3766 rpoH; putative RNA polymerase sigma-32 factor K03089 rpoH; RNA polymerase sigma-32 factor
E RL0422 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
C Other transcription-related factors
D RNA polymerase-associated proteins
E RL0127 nusA; putative transcription elongation protein (N utilization substance protein A) (L factor) K02600 nusA; transcription termination/antitermination protein NusA
E RL1633 nusB; putative N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
E RL1760 nusG; putative transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
E RL3091 putative transmembrane protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E RL0999 putative two-component regulator sensor histidine kinase protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E RL1000 putative hydrolase K19707 rsbQ; sigma-B regulation protein RsbQ
D Transcription elongation factors
E RL2643 dksA; putative dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
E RL3422 greA; putative transcription elongation factor K03624 greA; transcription elongation factor GreA
D Transcription termination factor
E RL4740 rho; putative transcription termination factor rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024