+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Rothia mucilaginosa

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D RMDY18_08220 dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RMDY18_11890 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C RMDY18_10230 GTPase K03595 era; GTPase C RMDY18_09010 predicted GTPase K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C RMDY18_14830 transcription elongation factor K02600 nusA; transcription termination/antitermination protein NusA C RMDY18_09850 transcription termination factor K03625 nusB; transcription antitermination protein NusB C RMDY18_04270 transcription antiterminator K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D RMDY18_15980 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D RMDY18_07750 tRNA and rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D RMDY18_14450 16S RNA G1207 methylase RsmC K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D RMDY18_08180 N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D RMDY18_10170 uncharacterized protein conserved in archaea K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D RMDY18_19860 predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D RMDY18_13600 predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D RMDY18_16030 predicted methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D RMDY18_14090 predicted rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D RMDY18_17250 rRNA methylase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D RMDY18_05030 predicted Fe-S-cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D RMDY18_14090 predicted rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D RMDY18_02470 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D RMDY18_17560 pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D RMDY18_13970 16S rRNA uridine-516 pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D RMDY18_13330 pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C RMDY18_05300 acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C RMDY18_08440 RimM protein, required for 16S rRNA processing K02860 rimM; 16S rRNA processing protein RimM B rRNA processing factors C RMDY18_08220 dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3] C RMDY18_08970 ribonuclease G and E K08300 rne; ribonuclease E [EC:3.1.26.12] C RMDY18_09770 predicted endonuclease involved in recombination K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C RMDY18_04010 superfamily II DNA and RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C RMDY18_10230 GTPase K03595 era; GTPase C RMDY18_07050 predicted GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C RMDY18_15220 predicted GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C RMDY18_13930 predicted GTPase K03977 engA; GTPase C RMDY18_09010 predicted GTPase K03979 obgE; GTPase [EC:3.6.5.-] C RMDY18_14430 GTPase K03665 hflX; GTPase B Other maturation factors C RMDY18_12990 putative translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C RMDY18_09540 guanosine polyphosphate pyrophosphohydrolase/synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C RMDY18_14800 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C RMDY18_14850 uncharacterized protein conserved in archaea K09748 rimP; ribosome maturation factor RimP C RMDY18_15100 uncharacterized conserved protein K14761 rlbA; ribosome-associated protein C RMDY18_09050 uncharacterized protein K09710 ybeB; ribosome-associated protein C RMDY18_10200 predicted metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor C RMDY18_05720 predicted GTPase, probable translation factor K06942 ychF; ribosome-binding ATPase C RMDY18_08200 predicted metal-binding, possibly nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 22, 2025