+D Transcription factors KO #

  Transcription Factors - Rossellomorea sp. DA94

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG TOX C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D P8596_06630 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator D P8596_05895 GyrI-like domain-containing protein K13653 K13653; AraC family transcriptional regulator D P8596_06110 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator D P8596_06305 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator D P8596_11235 trifunctional transcriptional activator/DNA repair protein Ada/methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D P8596_11865 LysR family transcriptional regulator K19242 citR; LysR family transcriptional regulator, repressor for citA D P8596_07200 LysR family transcriptional regulator K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD D P8596_20200 LysR family transcriptional regulator K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD D P8596_11745 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon C DeoR family D P8596_19640 DeoR/GlpR family DNA-binding transcription regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D P8596_22755 spoIIID; (GenBank) sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D P8596_15970 helix-turn-helix transcriptional regulator K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator D P8596_03360 DeoR family transcriptional regulator K21601 ycnK; DeoR family transcriptional regulator, copper-sensing transcriptional repressor C LacI family D P8596_03085 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D P8596_04710 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D P8596_06115 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D P8596_18170 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D P8596_19010 ccpA; (GenBank) catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D P8596_21425 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D P8596_22185 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D P8596_02610 LacI family DNA-binding transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor C GntR family D P8596_22465 treR; (GenBank) trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor D P8596_21465 GntR family transcriptional regulator K24966 gamR; GntR family transcriptional regulator, amino sugar utilization regulator D P8596_19690 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D P8596_10350 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D P8596_03260 GntR family transcriptional regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D P8596_02075 GntR family transcriptional regulator K07979 ytrA; GntR family transcriptional regulator C TetR/AcrR family D P8596_16995 TetR/AcrR family transcriptional regulator K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein D P8596_06145 TetR/AcrR family transcriptional regulator K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon C Lrp/AsnC family D P8596_06230 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D P8596_18445 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D P8596_16890 response regulator transcription factor K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein C MarR family D P8596_07825 HTH-type transcriptional regulator Hpr K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr D P8596_04990 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor D P8596_08920 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor D P8596_20495 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D P8596_10750 MerR family transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor D P8596_12235 MerR family transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator D P8596_14615 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D P8596_20920 MerR family transcriptional regulator K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator C Fur family D P8596_14840 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D P8596_15880 Fur family transcriptional regulator K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator D P8596_07015 perR; (GenBank) peroxide-responsive transcriptional repressor PerR K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family C CRP/FNR family D P8596_23595 yeiL; (GenBank) transcriptional regulator YeiL K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator C Rrf2 family D P8596_02935 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D P8596_16360 Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor C ArsR family D P8596_05470 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D P8596_20315 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D P8596_18510 metalloregulator ArsR/SmtB family transcription factor K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor C XRE family D P8596_01110 helix-turn-helix transcriptional regulator K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation D P8596_22715 helix-turn-helix domain-containing protein K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation C PadR family D P8596_05255 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D P8596_17495 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D P8596_18695 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D P8596_18715 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator C Other families D P8596_14080 mntR; (GenBank) transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D P8596_14340 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D P8596_06555 helix-turn-helix domain-containing protein K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR D P8596_13000 helix-turn-helix transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR D P8596_20675 helix-turn-helix transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR D P8596_20705 helix-turn-helix transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR D P8596_21540 helix-turn-helix transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR D P8596_22060 helix-turn-helix domain-containing protein K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR D P8596_00300 purR; (GenBank) pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor D P8596_23230 helix-turn-helix domain-containing protein K26990 rsoA; sigma-O factor regulatory protein RsoA D P8596_23365 sugar diacid recognition domain-containing protein K02647 cdaR; carbohydrate diacid regulator D P8596_19775 sigma 54-interacting transcriptional regulator K06714 rocR; arginine utilization regulatory protein D P8596_01640 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D P8596_10015 codY; (GenBank) GTP-sensing pleiotropic transcriptional regulator CodY K03706 codY; transcriptional pleiotropic repressor D P8596_05705 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator D P8596_03200 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator D P8596_05245 transcriptional regulator K07729 K07729; putative transcriptional regulator D P8596_06280 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family D P8596_01470 YlcI/YnfO family protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI C Other families B Other transcription factors C BglG family D P8596_19680 PRD domain-containing protein K26932 sacT; sacPA operon transcriptional antiterminator D P8596_01735 transcription antiterminator K03480 glcT; transcriptional antiterminator D P8596_05395 BglG family transcription antiterminator K03483 mtlR; mannitol operon transcriptional activator D P8596_05840 BglG family transcription antiterminator K03483 mtlR; mannitol operon transcriptional activator C Others D P8596_10665 PucR family transcriptional regulator ligand-binding domain-containing protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D P8596_18365 helix-turn-helix domain-containing protein K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator D P8596_00250 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D P8596_15560 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D P8596_00345 spoVT; (GenBank) stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D P8596_23780 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D P8596_23790 noc; (GenBank) nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D P8596_12305 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator D P8596_18330 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator D P8596_15175 argR; (GenBank) transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism D P8596_16100 hrcA; (GenBank) heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D P8596_12750 tenA; (GenBank) thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D P8596_12730 thiamine phosphate synthase K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10] D P8596_00565 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response D P8596_02330 paaX; (GenBank) phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D P8596_20830 sugar-binding transcriptional regulator K05311 cggR; central glycolytic genes regulator D P8596_08370 BMP family ABC transporter substrate-binding protein K05519 med; transcriptional activator of comK gene D P8596_14485 mtrB; (GenBank) trp RNA-binding attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein) D P8596_09705 pyrR; (GenBank) bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D P8596_23125 RsfA family transcriptional regulator K06314 rsfA; prespore-specific regulator D P8596_07535 transcriptional regulator SplA domain-containing protein K06315 splA; transcriptional regulator of the spore photoproduct lyase operon D P8596_04030 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D P8596_17120 nrdR; (GenBank) transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D P8596_22640 hutP; (GenBank) hut operon transcriptional regulator HutP K09683 hutP; hut operon positive regulatory protein D P8596_08045 competence protein ComK K02250 comK; competence protein ComK D P8596_21580 competence protein ComK K02250 comK; competence protein ComK D P8596_09555 mraZ; (GenBank) division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 21, 2025 #
Classification taken and modified from TRANSFAC 7.0