+D Transcription factors KO
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Transcription Factors - Rossellomorea sp. y25
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Stork head/winged helix factors
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG TOX
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D V2W31_06030 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D V2W31_17115 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D V2W31_10720 trifunctional transcriptional activator/DNA repair protein Ada/methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D V2W31_11395 LysR family transcriptional regulator K19242 citR; LysR family transcriptional regulator, repressor for citA
D V2W31_06920 LysR family transcriptional regulator K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD
D V2W31_05490 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D V2W31_18755 DeoR/GlpR family DNA-binding transcription regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D V2W31_21970 spoIIID; (GenBank) sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D V2W31_15460 helix-turn-helix transcriptional regulator K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
D V2W31_03320 DeoR family transcriptional regulator K21601 ycnK; DeoR family transcriptional regulator, copper-sensing transcriptional repressor
C LacI family
D V2W31_03135 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D V2W31_04290 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D V2W31_05770 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D V2W31_05820 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D V2W31_17630 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D V2W31_18090 ccpA; (GenBank) catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D V2W31_02620 LacI family DNA-binding transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
C GntR family
D V2W31_05190 UTRA domain-containing protein K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D V2W31_20565 treR; (GenBank) trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D V2W31_20785 GntR family transcriptional regulator K24966 gamR; GntR family transcriptional regulator, amino sugar utilization regulator
D V2W31_18805 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D V2W31_21410 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D V2W31_10220 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D V2W31_06035 FadR/GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D V2W31_02080 GntR family transcriptional regulator K07979 ytrA; GntR family transcriptional regulator
C TetR/AcrR family
D V2W31_16730 TetR/AcrR family transcriptional regulator K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D V2W31_05815 TetR/AcrR family transcriptional regulator K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon
C Lrp/AsnC family
D V2W31_03870 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D V2W31_17760 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D V2W31_16630 response regulator transcription factor K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
C MarR family
D V2W31_07565 HTH-type transcriptional regulator Hpr K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr
D V2W31_08760 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D V2W31_19530 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D V2W31_10480 MerR family transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D V2W31_11815 MerR family transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D V2W31_14280 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D V2W31_19995 MerR family transcriptional regulator K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator
C Fur family
D V2W31_14515 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D V2W31_15375 Fur family transcriptional regulator K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D V2W31_06740 perR; (GenBank) peroxide-responsive transcriptional repressor PerR K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D V2W31_07710 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D V2W31_17195 yeiL; (GenBank) transcriptional regulator YeiL K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
D V2W31_22830 yeiL; (GenBank) transcriptional regulator YeiL K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
D V2W31_02935 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D V2W31_15865 Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D V2W31_10885 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D V2W31_11020 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D V2W31_07205 metalloregulator ArsR/SmtB family transcription factor K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
C XRE family
D V2W31_21915 helix-turn-helix domain-containing protein K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
D V2W31_21930 helix-turn-helix domain-containing protein K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
C PadR family
D V2W31_17230 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D V2W31_17235 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D V2W31_17430 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D V2W31_13730 mntR; (GenBank) transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D V2W31_14000 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D V2W31_03760 helix-turn-helix transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D V2W31_06325 helix-turn-helix domain-containing protein K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D V2W31_11640 helix-turn-helix transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D V2W31_12610 helix-turn-helix transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D V2W31_17830 helix-turn-helix transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D V2W31_19750 helix-turn-helix transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D V2W31_19775 helix-turn-helix transcriptional regulator K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D V2W31_20855 helix-turn-helix domain-containing protein K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D V2W31_00310 purR; (GenBank) pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D V2W31_22425 hypothetical protein K26990 rsoA; sigma-O factor regulatory protein RsoA
D V2W31_18880 sigma 54-interacting transcriptional regulator K06714 rocR; arginine utilization regulatory protein
D V2W31_01505 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D V2W31_09885 codY; (GenBank) GTP-sensing pleiotropic transcriptional regulator CodY K03706 codY; transcriptional pleiotropic repressor
D V2W31_05110 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D V2W31_17155 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D V2W31_03805 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
D V2W31_06010 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D V2W31_01335 YlcI/YnfO family protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D V2W31_18795 PRD domain-containing protein K26932 sacT; sacPA operon transcriptional antiterminator
D V2W31_01680 transcription antiterminator K03480 glcT; transcriptional antiterminator
D V2W31_05575 BglG family transcription antiterminator K03483 mtlR; mannitol operon transcriptional activator
C Others
D V2W31_11585 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D V2W31_10395 PucR family transcriptional regulator ligand-binding domain-containing protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D V2W31_17690 helix-turn-helix domain-containing protein K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator
D V2W31_00260 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D V2W31_00355 spoVT; (GenBank) stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D V2W31_23020 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D V2W31_23030 noc; (GenBank) nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D V2W31_11890 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator
D V2W31_17665 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator
D V2W31_14850 argR; (GenBank) transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism
D V2W31_15590 hrcA; (GenBank) heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D V2W31_12375 tenA; (GenBank) thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D V2W31_12355 thiamine phosphate synthase K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10]
D V2W31_00575 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D V2W31_02330 paaX; (GenBank) phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D V2W31_19910 sugar-binding transcriptional regulator K05311 cggR; central glycolytic genes regulator
D V2W31_08190 BMP family ABC transporter substrate-binding protein K05519 med; transcriptional activator of comK gene
D V2W31_14145 mtrB; (GenBank) trp RNA-binding attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D V2W31_09575 pyrR; (GenBank) bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D V2W31_22330 RsfA family transcriptional regulator K06314 rsfA; prespore-specific regulator
D V2W31_07260 transcriptional regulator SplA domain-containing protein K06315 splA; transcriptional regulator of the spore photoproduct lyase operon
D V2W31_03835 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator
D V2W31_16855 nrdR; (GenBank) transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D V2W31_21840 hutP; (GenBank) hut operon transcriptional regulator HutP K09683 hutP; hut operon positive regulatory protein
D V2W31_07865 competence protein ComK K02250 comK; competence protein ComK
D V2W31_20925 competence protein ComK K02250 comK; competence protein ComK
D V2W31_09425 mraZ; (GenBank) division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 21, 2025
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Classification taken and modified from TRANSFAC 7.0