+F Repair protein KO
#
DNA Repair and Recombination Proteins - Ralstonia pickettii DTP0602
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D N234_02940 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D N234_34255 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D N234_16730 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E N234_18715 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E N234_01770 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E N234_05395 endonuclease IV K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E N234_27430 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D N234_18405 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D N234_17400 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D N234_02940 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D N234_34255 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D N234_26530 ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D N234_16730 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D N234_33445 dioxygenase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E N234_18715 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E N234_03285 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E N234_11775 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E N234_05765 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E N234_34260 Ada K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E N234_01770 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E N234_19895 DNA-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E N234_01760 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E N234_05395 endonuclease IV K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E N234_00900 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E N234_33035 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E N234_06840 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E N234_05525 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E N234_11485 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E N234_15515 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E N234_29665 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E N234_01870 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E N234_05420 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E N234_14490 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E N234_01395 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E N234_15560 uvrD; DNA-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E N234_15515 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E N234_11485 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F N234_19575 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F N234_19570 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F N234_19400 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F N234_04480 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F N234_07260 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E N234_05705 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E N234_17500 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E N234_03030 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E N234_15480 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E N234_04200 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E N234_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E N234_17040 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E N234_17845 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E N234_07785 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E N234_36300 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E N234_14120 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E N234_34845 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E N234_13940 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E N234_24675 ethanolamine utilization protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E N234_13795 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E N234_11485 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E N234_01395 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E N234_15560 uvrD; DNA-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E N234_01880 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E N234_02680 recA; recombinase RecA K03553 recA; recombination protein RecA
E N234_02405 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E N234_02400 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E N234_02415 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E N234_20300 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E N234_13235 primosomal replication protein K02686 priB; primosomal replication protein N
E N234_21845 DNA repair exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50
E N234_21840 metallophosphatase K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E N234_02680 recA; recombinase RecA K03553 recA; recombination protein RecA
E N234_11755 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E N234_17715 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E N234_05525 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E N234_14540 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E N234_13785 recR; recombinase RecR K06187 recR; recombination protein RecR
E N234_05335 DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E N234_18085 recombinase RdgC K03554 rdgC; recombination associated protein RdgC
E N234_02405 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E N234_02400 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E N234_02415 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E N234_13805 ATP-dependent exonuclease K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E N234_13810 recombinase RecB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E N234_21845 DNA repair exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50
E N234_21840 metallophosphatase K03547 sbcD; DNA repair protein SbcD/Mre11
E N234_04285 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E N234_37785 hypothetical protein K10979 ku; DNA end-binding protein Ku
E N234_32135 hypothetical protein K10979 ku; DNA end-binding protein Ku
E N234_33290 DNA repair protein K10979 ku; DNA end-binding protein Ku
E N234_33275 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E N234_37775 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F N234_03990 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F N234_00015 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F N234_33205 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F N234_27290 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta
F N234_20565 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F N234_05525 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F N234_14540 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F N234_13785 recR; recombinase RecR K06187 recR; recombination protein RecR
F N234_11485 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F N234_02425 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F N234_06685 transcriptional regulator K04764 ihfA; integration host factor subunit alpha
F N234_04040 transcriptional regulator K05788 ihfB; integration host factor subunit beta
E Supressor
F N234_19565 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F N234_29665 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F N234_01870 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F N234_05420 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F N234_35570 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F N234_35950 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F N234_36280 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F N234_36320 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F N234_25960 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F N234_22010 endonuclease K03746 hns; DNA-binding protein H-NS
F N234_35620 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F N234_09720 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F N234_36790 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F N234_32750 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F N234_36870 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F N234_10445 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F N234_29875 DNA-binding protein K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D N234_20575 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D N234_02680 recA; recombinase RecA K03553 recA; recombination protein RecA
D N234_13250 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88]
D N234_05335 DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D N234_10245 DNA polymerase K02336 polB; DNA polymerase II [EC:2.7.7.7]
D N234_26415 DNA damage-inducible mutagenesis protein K14160 imuA; protein ImuA
D N234_26420 dna polymerase iv protein K14161 imuB; protein ImuB
D N234_26425 DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D N234_01880 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D N234_02685 recombination protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D N234_20210 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D N234_07155 helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D N234_18405 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D N234_17400 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D N234_18240 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D N234_13800 ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D N234_18235 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024