+E Transcription factors KO #

  Transcription Factors - Rodentibacter pneumotropicus

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D NCTC8284_01124 rhaS; HTH-type transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE C LysR family D NCTC8284_01528 gcvA_1; glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D NCTC8284_00321 gltC; DNA-binding transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D NCTC8284_01449 metR; HTH-type transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D NCTC8284_00496 oxyR_2; hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D NCTC8284_02031 cysB_2; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator C DeoR family D NCTC8284_00565 deoR_2; DeoR family transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D NCTC8284_00471 glpR_1; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D NCTC8284_01617 ulaR; HTH-type transcriptional regulator UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor C LacI family D NCTC8284_00191 rbsR; ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NCTC8284_00566 xylR; xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NCTC8284_01403 galR_1; HTH-type transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NCTC8284_02222 purR_2; HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor C GntR family D NCTC8284_02371 treR; Trehalose operon transcriptional repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor D NCTC8284_03719 fadR; fatty acid metabolism regulator protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D NCTC8284_03124 uxuR_2; Uxu operon regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D NCTC8284_03111 uxuR_1; Uxu operon regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor C TetR/AcrR family D NCTC8284_00849 TetR family transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor D NCTC8284_00494 fabR; HTH-type transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D NCTC8284_03971 asnC_4; regulatory protein AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D NCTC8284_01784 lrp; leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family C MarR family C MerR family D NCTC8284_00886 hmrR; Copper export regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator C Fur family D NCTC8284_02827 fur; Fe(3+) uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator C IclR family D NCTC8284_03311 yiaJ_1; HTH-type transcriptional regulator YiaJ K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor C CRP/FNR family D NCTC8284_03408 crp_1; catabolite gene activator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D NCTC8284_03409 crp_2; catabolite gene activator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D NCTC8284_02044 fnr; anaerobic regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D NCTC8284_01322 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor C ArsR family C XRE family C PadR family C Other families D NCTC8284_01495 birA_1; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D NCTC8284_00684 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D NCTC8284_02286 ner; protein Ner K07724 ner; Ner family transcriptional regulator D NCTC8284_00553 nadR_1; transcriptional regulator NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D NCTC8284_00719 cdaR_1; Sugar diacid regulator K02647 cdaR; carbohydrate diacid regulator D NCTC8284_02798 modE; transcriptional regulator ModE K02019 modE; molybdate transport system regulatory protein B Ribbon-helix-helix C CopG family C Other families D NCTC8284_00885 metJ_2; Met repressor K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor B Other transcription factors C BglG family C Others D NCTC8284_00795 bolA; protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D NCTC8284_02016 argR_2; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D NCTC8284_01798 tenA; TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D NCTC8284_00252 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D NCTC8284_01934 Predicted transcriptional regulator K07733 alpA; prophage regulatory protein D NCTC8284_03527 Predicted transcriptional regulator K07733 alpA; prophage regulatory protein D NCTC8284_02703 dksA_1; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D NCTC8284_02666 nrdR_2; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0