+E Transcription factors KO
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Transcription Factors - Rodentibacter pneumotropicus
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D NCTC8284_01124 rhaS; HTH-type transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
C LysR family
D NCTC8284_01528 gcvA_1; glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D NCTC8284_00321 gltC; DNA-binding transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D NCTC8284_01449 metR; HTH-type transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D NCTC8284_00496 oxyR_2; hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D NCTC8284_02031 cysB_2; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
C DeoR family
D NCTC8284_00565 deoR_2; DeoR family transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D NCTC8284_00471 glpR_1; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D NCTC8284_01617 ulaR; HTH-type transcriptional regulator UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
C LacI family
D NCTC8284_00191 rbsR; ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NCTC8284_00566 xylR; xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NCTC8284_01403 galR_1; HTH-type transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NCTC8284_02222 purR_2; HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
C GntR family
D NCTC8284_02371 treR; Trehalose operon transcriptional repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D NCTC8284_03719 fadR; fatty acid metabolism regulator protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D NCTC8284_03124 uxuR_2; Uxu operon regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D NCTC8284_03111 uxuR_1; Uxu operon regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
C TetR/AcrR family
D NCTC8284_00849 TetR family transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D NCTC8284_00494 fabR; HTH-type transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D NCTC8284_03971 asnC_4; regulatory protein AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D NCTC8284_01784 lrp; leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
C MerR family
D NCTC8284_00886 hmrR; Copper export regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
C Fur family
D NCTC8284_02827 fur; Fe(3+) uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
C IclR family
D NCTC8284_03311 yiaJ_1; HTH-type transcriptional regulator YiaJ K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
C CRP/FNR family
D NCTC8284_03408 crp_1; catabolite gene activator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NCTC8284_03409 crp_2; catabolite gene activator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NCTC8284_02044 fnr; anaerobic regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D NCTC8284_01322 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
C ArsR family
C XRE family
C PadR family
C Other families
D NCTC8284_01495 birA_1; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D NCTC8284_00684 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D NCTC8284_02286 ner; protein Ner K07724 ner; Ner family transcriptional regulator
D NCTC8284_00553 nadR_1; transcriptional regulator NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D NCTC8284_00719 cdaR_1; Sugar diacid regulator K02647 cdaR; carbohydrate diacid regulator
D NCTC8284_02798 modE; transcriptional regulator ModE K02019 modE; molybdate transport system regulatory protein
B Ribbon-helix-helix
C CopG family
C Other families
D NCTC8284_00885 metJ_2; Met repressor K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
B Other transcription factors
C BglG family
C Others
D NCTC8284_00795 bolA; protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D NCTC8284_02016 argR_2; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D NCTC8284_01798 tenA; TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D NCTC8284_00252 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D NCTC8284_01934 Predicted transcriptional regulator K07733 alpA; prophage regulatory protein
D NCTC8284_03527 Predicted transcriptional regulator K07733 alpA; prophage regulatory protein
D NCTC8284_02703 dksA_1; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D NCTC8284_02666 nrdR_2; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0