+F Repair protein KO
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DNA Repair and Recombination Proteins - Rickettsia prowazekii Madrid E
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E RP351 RP351; DNA-3-METHYLADENINE GLYCOSIDASE (mpg) K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E RP746 RP746; ENDONUCLEASE III (nth) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D RP399 RP399; DEOXYURIDINE 5-TRIPHOSPHATE NUCLEOTIDOHYDROLASE (dut) K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E RP845 RP845; unknown K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E RP351 RP351; DNA-3-METHYLADENINE GLYCOSIDASE (mpg) K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E RP746 RP746; ENDONUCLEASE III (nth) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E RP676 RP676; EXODEOXYRIBONUCLEASE III (xthA2) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E RP260 RP260; EXODEOXYRIBONUCLEASE III (xthA1) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E RP528 RP528; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ (recJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E RP720 RP720; DNA LIGASE (lig) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E RP835 RP835; EXCINUCLEASE ABC SUBUNIT A (uvrA) K03701 uvrA; excinuclease ABC subunit A
E RP203 RP203; EXCINUCLEASE ABC SUBUNIT B (uvrB) K03702 uvrB; excinuclease ABC subunit B
E RP572 RP572; EXCINUCLEASE ABC SUBUNIT C (uvrC) K03703 uvrC; excinuclease ABC subunit C
E RP447 RP447; DNA HELICASE II (uvrD) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RP720 RP720; DNA LIGASE (lig) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F RP140 RP140; DNA-DIRECTED RNA POLYMERASE BETA CHAIN (rpoB) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F RP141 RP141; DNA-DIRECTED RNA POLYMERASE BETA PRIME CHAIN (rpoC) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F RP635 RP635; DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN (rpoA) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F RP578 RP578; unknown K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F RP598 RP598; TRANSCRIPTION-REPAIR COUPLING FACTOR (mfd) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E RP298 RP298; DNA MISMATCH REPAIR PROTEIN MUTS (mutS) K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E RP880 RP880; DNA MISMATCH REPAIR PROTEIN MUTL (mutL) K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E RP675 RP675; EXODEOXYRIBONUCLEASE LARGE SUBUNIT (xseA) K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E RP350 RP350; EXODEOXYRIBONUCLEASE SMALL SUBUNIT (xseB) K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E RP778 RP778; DNA POLYMERASE III, ALPHA CHAIN (dnaE) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E RP419 RP419; DNA POLYMERASE III, BETA CHAIN (dnaN) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E RP872 RP872; unknown K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E RP189 RP189; unknown K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E RP172 RP172; DNA POLYMERASE III, DELTA SUBUNIT (holB) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E RP732 RP732; DNA POLYMERASE III, EPSILON CHAIN (dnaQ) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E RP865 RP865; DNA POLYMERASE III SUBUNITS GAMMA AND TAU (dnaX) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E RP720 RP720; DNA LIGASE (lig) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E RP447 RP447; DNA HELICASE II (uvrD) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RP836 RP836; SINGLE-STRAND BINDING PROTEIN (ssb) K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E RP761 RP761; RECA PROTEIN (recA) K03553 recA; recombination protein RecA
E RP385 RP385; HOLLIDAY JUNCTION DNA HELICASE RUVA (ruvA) K03550 ruvA; holliday junction DNA helicase RuvA
E RP386 RP386; HOLLIDAY JUNCTION DNA HELICASE RUVB (ruvB) K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E RP119 RP119; CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC (ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E RP540 RP540; POSSIBLE PRIMOSOMAL PROTEIN N (priA) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E RP761 RP761; RECA PROTEIN (recA) K03553 recA; recombination protein RecA
E RP546 RP546; DNA REPAIR PROTEIN RADA HOMOLOG (radA) K04485 radA; DNA repair protein RadA/Sms
E RP029 RP029; RECF PROTEIN (recF) K03629 recF; DNA replication and repair protein RecF
E RP593 RP593; ATP-DEPENDENT DNA HELICASE RECG (recG) K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E RP528 RP528; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ (recJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E RP438 RP438; RECOMBINATION PROTEIN RECR (recR) K06187 recR; recombination protein RecR
E RP182 RP182; DNA REPAIR PROTEIN RECN (recN) K03631 recN; DNA repair protein RecN (Recombination protein N)
E RP385 RP385; HOLLIDAY JUNCTION DNA HELICASE RUVA (ruvA) K03550 ruvA; holliday junction DNA helicase RuvA
E RP386 RP386; HOLLIDAY JUNCTION DNA HELICASE RUVB (ruvB) K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E RP119 RP119; CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC (ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E RP734 RP734; ATP-DEPENDENT NUCLEASE SUBUNIT A (addA) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E RP403 RP403; unknown K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F RP206 RP206; DNA GYRASE SUBUNIT A (gyrA) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F RP580 RP580; DNA GYRASE SUBUNIT B (gyrB2) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F RP326 RP326; DNA TOPOISOMERASE I (topA) K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F RP171 RP171; DNA-BINDING PROTEIN HU (hupA) K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F RP528 RP528; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ (recJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F RP438 RP438; RECOMBINATION PROTEIN RECR (recR) K06187 recR; recombination protein RecR
F RP720 RP720; DNA LIGASE (lig) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F RP708 RP708; INTEGRATION HOST FACTOR ALPHA-SUBUNIT (himA) K04764 ihfA; integration host factor subunit alpha
E Supressor
F RP835 RP835; EXCINUCLEASE ABC SUBUNIT A (uvrA) K03701 uvrA; excinuclease ABC subunit A
F RP203 RP203; EXCINUCLEASE ABC SUBUNIT B (uvrB) K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D RP761 RP761; RECA PROTEIN (recA) K03553 recA; recombination protein RecA
D RP182 RP182; DNA REPAIR PROTEIN RECN (recN) K03631 recN; DNA repair protein RecN (Recombination protein N)
D RP836 RP836; SINGLE-STRAND BINDING PROTEIN (ssb) K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D RP399 RP399; DEOXYURIDINE 5-TRIPHOSPHATE NUCLEOTIDOHYDROLASE (dut) K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RP513 RP513; RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (nrdA) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RP512 RP512; RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (nrdB) K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024