+D GENES KO
#
KEGG Orthology (KO) - Rickettsia rickettsii Iowa
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:rrj00010]
D RrIowa_0808 pyruvate,phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D RrIowa_0418 pyruvate dehydrogenase E1 component alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RrIowa_0419 pyruvate dehydrogenase E1 component beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RrIowa_0826 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RrIowa_0912 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_1449 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00020 Citrate cycle (TCA cycle) [PATH:rrj00020]
D RrIowa_1533 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RrIowa_1443 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RrIowa_0425 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RrIowa_0282 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D RrIowa_0280 dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RrIowa_0912 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_1449 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_0712 succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RrIowa_0713 succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RrIowa_0211 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RrIowa_0091 succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RrIowa_0209 succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RrIowa_0210 succinate dehydrogenase membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RrIowa_1204 fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RrIowa_0618 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RrIowa_0418 pyruvate dehydrogenase E1 component alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RrIowa_0419 pyruvate dehydrogenase E1 component beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RrIowa_0826 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway
D RrIowa_0483 ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00040 Pentose and glucuronate interconversions
D RrIowa_1420 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
C 00051 Fructose and mannose metabolism [PATH:rrj00051]
D RrIowa_0786 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RrIowa_1237 hypothetical protein K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D RrIowa_0483 ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism
D RrIowa_0547 UDP-N-acetylglucosamine 4,6-dehydratase K17716 capD; UDP-glucose 4-epimerase [EC:5.1.3.2]
C 00053 Ascorbate and aldarate metabolism
D RrIowa_1420 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
C 00500 Starch and sucrose metabolism [PATH:rrj00500]
D RrIowa_1297 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rrj00520]
D RrIowa_0925 UDP-N-acetylglucosamine pyrophosphorylase K11528 glmU; UDP-N-acetylglucosamine pyrophosphorylase [EC:2.7.7.23]
D RrIowa_1050 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RrIowa_0402 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RrIowa_0548 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D RrIowa_1420 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RrIowa_0547 UDP-N-acetylglucosamine 4,6-dehydratase K17716 capD; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RrIowa_0786 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RrIowa_1237 hypothetical protein K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
C 00620 Pyruvate metabolism [PATH:rrj00620]
D RrIowa_0418 pyruvate dehydrogenase E1 component alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RrIowa_0419 pyruvate dehydrogenase E1 component beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RrIowa_0826 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RrIowa_0912 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_1449 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_0602 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D RrIowa_0618 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RrIowa_1204 fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RrIowa_0808 pyruvate,phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rrj00630]
D RrIowa_0618 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RrIowa_1533 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RrIowa_1443 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RrIowa_0072 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D RrIowa_1135 propionyl-CoA carboxylase biotin-containing subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D RrIowa_1136 propionyl-CoA carboxylase carboxyltransferase subunit K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D RrIowa_0801 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RrIowa_1353 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RrIowa_0912 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_1449 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00640 Propanoate metabolism [PATH:rrj00640]
D RrIowa_0912 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_1449 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_1135 propionyl-CoA carboxylase biotin-containing subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D RrIowa_1136 propionyl-CoA carboxylase carboxyltransferase subunit K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D RrIowa_0713 succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RrIowa_0712 succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00650 Butanoate metabolism [PATH:rrj00650]
D RrIowa_1345 poly-beta-hydroxybutyrate polymerase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D RrIowa_0072 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D RrIowa_0211 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RrIowa_0091 succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RrIowa_0209 succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RrIowa_0210 succinate dehydrogenase membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RrIowa_0741 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RrIowa_1076 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RrIowa_1077 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
C 00660 C5-Branched dibasic acid metabolism
D RrIowa_0713 succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RrIowa_0712 succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00562 Inositol phosphate metabolism [PATH:rrj00562]
D RrIowa_0391 myo-inositol-1(or 4)-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:rrj00190]
D RrIowa_0579 NADH-quinone oxidoreductase chain A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D RrIowa_0578 NADH-quinone oxidoreductase chain B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D RrIowa_0577 NADH-quinone oxidoreductase chain C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D RrIowa_0576 NADH-quinone oxidoreductase chain D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D RrIowa_0575 NADH-quinone oxidoreductase chain E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D RrIowa_0195 NADH-quinone oxidoreductase chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D RrIowa_1441 NADH-quinone oxidoreductase chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D RrIowa_1440 NADH-quinone oxidoreductase chain H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D RrIowa_1439 NADH-quinone oxidoreductase chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D RrIowa_1434 NADH-quinone oxidoreductase chain J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D RrIowa_1435 NADH-quinone oxidoreductase chain K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D RrIowa_1436 NADH-quinone oxidoreductase chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D RrIowa_1437 NADH-quinone oxidoreductase chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D RrIowa_0943 NADH-quinone oxidoreductase chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D RrIowa_0211 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RrIowa_0091 succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RrIowa_0209 succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RrIowa_0210 succinate dehydrogenase membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RrIowa_0430 ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D RrIowa_0431 cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D RrIowa_0433 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D RrIowa_0560 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RrIowa_0295 cytochrome c oxidase polypeptide III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D RrIowa_0660 cytochrome c oxidase polypeptide I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D RrIowa_0662 cytochrome c oxidase polypeptide II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D RrIowa_0489 ctaG; cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D RrIowa_0412 heme O monooxygenase (ferredoxin) K02259 COX15; heme a synthase [EC:1.17.99.9]
D RrIowa_0349 cyanide-insensitive cytochrome bd-type quinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RrIowa_0350 cyanide-insensitive cytochrome bd-type quinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RrIowa_0407 cytochrome c K08738 CYC; cytochrome c
D RrIowa_1447 ATP synthase alpha chain K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RrIowa_1445 ATP synthase beta chain K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RrIowa_1446 ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RrIowa_1448 ATP synthase delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RrIowa_1444 ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RrIowa_0038 ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RrIowa_0036 ATP synthase B' chain K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RrIowa_0035 ATP synthase B chain K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RrIowa_0037 ATP synthase C chain K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RrIowa_1067 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:rrj00710]
D RrIowa_0483 ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RrIowa_0808 pyruvate,phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D RrIowa_0602 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D RrIowa_0618 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:rrj00720]
D RrIowa_0808 pyruvate,phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D RrIowa_0618 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RrIowa_1204 fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RrIowa_0211 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RrIowa_0091 succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RrIowa_0209 succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RrIowa_0210 succinate dehydrogenase membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RrIowa_0712 succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RrIowa_0713 succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RrIowa_0425 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RrIowa_1443 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RrIowa_0761 methylenetetrahydrofolate dehydrogenase (NADP+) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
C 00680 Methane metabolism [PATH:rrj00680]
D RrIowa_1353 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RrIowa_0618 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00910 Nitrogen metabolism [PATH:rrj00910]
D RrIowa_1382 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RrIowa_0801 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
C 00920 Sulfur metabolism
D RrIowa_0480 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:rrj00061]
D RrIowa_1393 acyl carrier protein K02078 acpP; acyl carrier protein
D RrIowa_1330 malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RrIowa_1407 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RrIowa_1394 3-oxoacyl-[acyl-carrier-protein] synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RrIowa_1392 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RrIowa_0008 (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RrIowa_0588 enoyl-[acyl-carrier protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
D RrIowa_1138 integral membrane protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis [PATH:rrj00074]
D RrIowa_1048 holo-[acyl-carrier protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D RrIowa_1393 acyl carrier protein K02078 acpP; acyl carrier protein
D RrIowa_1330 malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism
D RrIowa_0843 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 00564 Glycerophospholipid metabolism [PATH:rrj00564]
D RrIowa_0734 glycerol-3-phosphate dehydrogenase (NAD(P)+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D RrIowa_0843 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RrIowa_1488 phospholipase D K17717 pld; phospholipase D [EC:3.1.4.4]
D RrIowa_1138 integral membrane protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D RrIowa_0704 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D RrIowa_0394 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D RrIowa_0393 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D RrIowa_0099 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D RrIowa_1368 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
C 00565 Ether lipid metabolism
D RrIowa_1488 phospholipase D K17717 pld; phospholipase D [EC:3.1.4.4]
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids [PATH:rrj01040]
D RrIowa_0082 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:rrj00230]
D RrIowa_0355 phosphoribosylamidoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D RrIowa_0800 hypothetical cytosolic protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RrIowa_0108 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RrIowa_1399 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D RrIowa_0776 ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RrIowa_0779 ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RrIowa_0122 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D RrIowa_1056 guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase K21138 HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2]
D RrIowa_0453 guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase K21138 HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2]
D RrIowa_0471 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D RrIowa_1176 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00240 Pyrimidine metabolism [PATH:rrj00240]
D RrIowa_0242 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D RrIowa_0108 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RrIowa_1484 maf; septum formation protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D RrIowa_0623 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D RrIowa_0887 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D RrIowa_0129 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D RrIowa_0776 ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RrIowa_0779 ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RrIowa_1248 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D RrIowa_0653 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RrIowa_0486 thyX; thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:rrj00250]
D RrIowa_0153 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RrIowa_0741 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RrIowa_1382 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RrIowa_0801 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
C 00260 Glycine, serine and threonine metabolism [PATH:rrj00260]
D RrIowa_1371 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RrIowa_0513 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RrIowa_1353 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RrIowa_1528 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RrIowa_0912 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_1449 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_0394 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
C 00270 Cysteine and methionine metabolism [PATH:rrj00270]
D RrIowa_1415 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RrIowa_0800 hypothetical cytosolic protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RrIowa_1371 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RrIowa_0513 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RrIowa_0708 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RrIowa_0153 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RrIowa_0618 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00280 Valine, leucine and isoleucine degradation [PATH:rrj00280]
D RrIowa_0708 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RrIowa_0912 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_1449 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_1135 propionyl-CoA carboxylase biotin-containing subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D RrIowa_1136 propionyl-CoA carboxylase carboxyltransferase subunit K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D RrIowa_1076 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RrIowa_1077 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rrj00290]
D RrIowa_0708 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00300 Lysine biosynthesis [PATH:rrj00300]
D RrIowa_1371 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RrIowa_0513 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RrIowa_0709 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RrIowa_0233 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D RrIowa_0298 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D RrIowa_1579 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RrIowa_0691 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RrIowa_1084 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RrIowa_1082 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:rrj00310]
D RrIowa_0280 dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RrIowa_0912 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_1449 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_0741 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00220 Arginine biosynthesis [PATH:rrj00220]
D RrIowa_0801 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RrIowa_1382 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RrIowa_0153 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RrIowa_0176 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
C 00330 Arginine and proline metabolism
D RrIowa_0153 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism
C 00350 Tyrosine metabolism [PATH:rrj00350]
D RrIowa_0153 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RrIowa_0741 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism
D RrIowa_0153 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00380 Tryptophan metabolism
D RrIowa_0280 dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RrIowa_0912 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_1449 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rrj00400]
D RrIowa_0153 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
C 00430 Taurine and hypotaurine metabolism
D RrIowa_1382 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
C 00440 Phosphonate and phosphinate metabolism
D RrIowa_1572 metal-dependent hydrolase K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:rrj00450]
D RrIowa_0737 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RrIowa_0762 ferredoxin--NAD(P)(+) reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RrIowa_1247 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:rrj00460]
D RrIowa_1297 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RrIowa_1353 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:rrj00470]
D RrIowa_0162 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RrIowa_0403 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RrIowa_0666 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RrIowa_0691 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
C 00480 Glutathione metabolism [PATH:rrj00480]
D RrIowa_0226 cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RrIowa_0809 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RrIowa_0425 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:rrj00540]
D RrIowa_0007 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RrIowa_0409 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D RrIowa_0009 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RrIowa_1323 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D RrIowa_0525 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RrIowa_1303 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RrIowa_0791 arabinose-5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D RrIowa_0115 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RrIowa_0624 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RrIowa_0151 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RrIowa_1302 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rrj00541]
D RrIowa_0547 UDP-N-acetylglucosamine 4,6-dehydratase K17716 capD; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RrIowa_1420 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RrIowa_0546 UDP-2-acetamido-2,6-dideoxy-beta-L-mannose 4-dehydrogenase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D RrIowa_0786 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RrIowa_1237 hypothetical protein K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D RrIowa_0548 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
C 00550 Peptidoglycan biosynthesis [PATH:rrj00550]
D RrIowa_1050 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RrIowa_0402 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RrIowa_0401 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RrIowa_0666 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RrIowa_1084 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RrIowa_0403 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RrIowa_1082 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RrIowa_0705 undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RrIowa_1081 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RrIowa_0668 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RrIowa_1455 multimodular transpeptidase-transglycosylase PBP 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RrIowa_1014 cell elongation specific D,D-transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RrIowa_1017 ftsI; division specific D,D-transpeptidase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RrIowa_0641 D-alanyl-D-alanine serine-type carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:rrj00730]
D RrIowa_0868 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RrIowa_0869 cysteine desulfhydrase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RrIowa_1176 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism
D RrIowa_0950 UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism
C 00760 Nicotinate and nicotinamide metabolism [PATH:rrj00760]
D RrIowa_0732 ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D RrIowa_1558 NAD(P) transhydrogenase alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D RrIowa_1559 NAD(P) transhydrogenase alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D RrIowa_0134 NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D RrIowa_0741 succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:rrj00770]
D RrIowa_1324 hypothetical protein K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D RrIowa_1048 holo-[acyl-carrier protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D RrIowa_0708 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:rrj00780]
D RrIowa_1394 3-oxoacyl-[acyl-carrier-protein] synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RrIowa_1392 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RrIowa_0008 (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RrIowa_0588 enoyl-[acyl-carrier protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RrIowa_0818 biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:rrj00785]
D RrIowa_1587 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D RrIowa_1352 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D RrIowa_0912 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_1449 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_0418 pyruvate dehydrogenase E1 component alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RrIowa_0419 pyruvate dehydrogenase E1 component beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RrIowa_0826 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RrIowa_0282 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D RrIowa_0280 dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
C 00790 Folate biosynthesis [PATH:rrj00790]
D RrIowa_0630 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D RrIowa_0047 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D RrIowa_0812 folylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D RrIowa_0279 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D RrIowa_1108 queE; queuosine biosynthesis protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D RrIowa_1274 queC; queuosine biosynthesis protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D RrIowa_0132 queF; queuosine biosynthesis protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
C 00670 One carbon pool by folate [PATH:rrj00670]
D RrIowa_0047 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D RrIowa_0761 methylenetetrahydrofolate dehydrogenase (NADP+) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RrIowa_1353 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RrIowa_0337 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RrIowa_0486 thyX; thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D RrIowa_0910 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:rrj00860]
D RrIowa_1528 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RrIowa_1141 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RrIowa_0535 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RrIowa_0945 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RrIowa_0898 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D RrIowa_1604 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D RrIowa_1598 coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D RrIowa_1602 hypothetical membrane spanning protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D RrIowa_1603 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D RrIowa_0560 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RrIowa_0412 heme O monooxygenase (ferredoxin) K02259 COX15; heme a synthase [EC:1.17.99.9]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rrj00130]
D RrIowa_1250 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D RrIowa_1491 3-polyprenyl-4-hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D RrIowa_0950 UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D RrIowa_1140 3-demethylubiquinone 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D RrIowa_1008 2-polyprenyl-6-methoxyphenol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D RrIowa_1235 ubiE; ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D RrIowa_0294 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:rrj00900]
D RrIowa_0950 UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D RrIowa_0882 isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D RrIowa_0859 farnesyl pyrophosphate synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RrIowa_0705 undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
D RrIowa_0546 UDP-2-acetamido-2,6-dideoxy-beta-L-mannose 4-dehydrogenase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:rrj00946]
D RrIowa_1297 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:rrj00261]
D RrIowa_1371 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RrIowa_0513 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RrIowa_0709 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RrIowa_0233 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:rrj00521]
D RrIowa_0391 myo-inositol-1(or 4)-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RrIowa_0546 UDP-2-acetamido-2,6-dideoxy-beta-L-mannose 4-dehydrogenase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis
C 00401 Novobiocin biosynthesis
D RrIowa_0153 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
C 00333 Prodigiosin biosynthesis
D RrIowa_1330 malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RrIowa_1392 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RrIowa_0588 enoyl-[acyl-carrier protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D RrIowa_1393 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:rrj00999]
D RrIowa_1415 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RrIowa_1297 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
D RrIowa_0318 ferredoxin, 2Fe-2s K04755 fdx; ferredoxin, 2Fe-2S
C 00627 Aminobenzoate degradation
D RrIowa_0950 UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:rrj03020]
D RrIowa_0223 DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RrIowa_0224 DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RrIowa_1173 DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RrIowa_1049 DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:rrj03010]
D RrIowa_0886 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1
D RrIowa_0145 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D RrIowa_1191 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D RrIowa_0559 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D RrIowa_1180 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D RrIowa_0084 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6
D RrIowa_0214 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7
D RrIowa_1183 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8
D RrIowa_0381 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9
D RrIowa_1198 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D RrIowa_1174 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11
D RrIowa_0213 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D RrIowa_1175 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13
D RrIowa_1184 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14
D RrIowa_0794 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D RrIowa_1590 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16
D RrIowa_1188 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D RrIowa_0085 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18
D RrIowa_1193 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D RrIowa_1171 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20
D RrIowa_1126 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21
D RrIowa_0220 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1
D RrIowa_1194 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2
D RrIowa_1197 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D RrIowa_1196 LSU ribosomal protein L1E (= L4P) K02926 RP-L4; large subunit ribosomal protein L4
D RrIowa_1185 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5
D RrIowa_1182 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D RrIowa_0222 LSU ribosomal protein L12P (L7/L12) K02935 RP-L7; large subunit ribosomal protein L7/L12
D RrIowa_0086 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9
D RrIowa_0221 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10
D RrIowa_0219 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D RrIowa_0380 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D RrIowa_1187 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D RrIowa_1178 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D RrIowa_1190 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16
D RrIowa_1172 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17
D RrIowa_1181 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D RrIowa_0192 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19
D RrIowa_1110 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D RrIowa_1369 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21
D RrIowa_1192 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D RrIowa_1195 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23
D RrIowa_1186 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D RrIowa_1107 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25
D RrIowa_1370 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27
D RrIowa_0172 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28
D RrIowa_1189 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D RrIowa_1179 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D RrIowa_0173 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D RrIowa_1408 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32
D RrIowa_1591 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33
D RrIowa_1111 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D RrIowa_1109 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D RrIowa_0923 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36
D RrIowa_1119 Small Subunit Ribosomal RNA; ssuRNA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RrIowa_0339 Large Subunit Ribosomal RNA; lsuRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RrIowa_0340 5S RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:rrj00970]
D RrIowa_0884 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RrIowa_1041 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RrIowa_1525 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RrIowa_0860 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RrIowa_0979 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RrIowa_0444 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RrIowa_0756 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RrIowa_0584 tRNA-Trp K14222 tRNA-Cys; tRNA Cys
D RrIowa_0861 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RrIowa_0862 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RrIowa_0030 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RrIowa_1060 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RrIowa_1200 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RrIowa_1277 tRNA-His K14226 tRNA-His; tRNA His
D RrIowa_0626 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RrIowa_1214 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RrIowa_1578 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RrIowa_1053 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RrIowa_0625 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RrIowa_0382 tRNA-Met K14230 tRNA-Met; tRNA Met
D RrIowa_0174 tRNA-Met K14230 tRNA-Met; tRNA Met
D RrIowa_1404 tRNA-Met K14230 tRNA-Met; tRNA Met
D RrIowa_0018 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RrIowa_1482 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RrIowa_0841 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RrIowa_0926 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RrIowa_1334 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RrIowa_0249 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RrIowa_1589 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RrIowa_0140 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RrIowa_0216 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RrIowa_1201 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RrIowa_1170 tRNA-Val K14237 tRNA-Val; tRNA Val
D RrIowa_0889 tRNA-Val K14237 tRNA-Val; tRNA Val
D RrIowa_1141 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RrIowa_0535 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RrIowa_0237 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RrIowa_0236 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RrIowa_0238 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RrIowa_1552 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RrIowa_0229 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RrIowa_1542 glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RrIowa_1541 glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RrIowa_0357 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RrIowa_1425 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RrIowa_0144 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RrIowa_1247 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RrIowa_0337 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RrIowa_1254 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RrIowa_0700 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RrIowa_1130 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RrIowa_0600 class 1 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D RrIowa_0123 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RrIowa_0631 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RrIowa_0493 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RrIowa_0693 phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RrIowa_0694 phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RrIowa_0975 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RrIowa_0842 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:rrj03060]
D RrIowa_1177 secY.2; protein translocase subunit K03076 secY; preprotein translocase subunit SecY
D RrIowa_0217 secE; protein translocase subunit K03073 secE; preprotein translocase subunit SecE
D RrIowa_0141 secG; protein translocase subunit K03075 secG; preprotein translocase subunit SecG
D RrIowa_1064 secD; protein translocase subunit K03072 secD; preprotein translocase subunit SecD
D RrIowa_0194 secF; protein translocase subunit K03074 secF; preprotein translocase subunit SecF
D RrIowa_1063 yajC; protein translocase subunit K03210 yajC; preprotein translocase subunit YajC
D RrIowa_0098 yidC; 60 kDa inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RrIowa_1045 secA; protein translocase subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RrIowa_0130 secB; protein translocase subunit K03071 secB; preprotein translocase subunit SecB
D RrIowa_0263 signal recognition particle, subunit FFH/SRP54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RrIowa_1410 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor
D RrIowa_1367 tatA; Sec-independent protein translocase protein K03116 tatA; sec-independent protein translocase protein TatA
D RrIowa_1424 tatC; Sec-independent protein translocase protein K03118 tatC; sec-independent protein translocase protein TatC
D RrIowa_0196 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RrIowa_0664 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:rrj04122]
D RrIowa_0868 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RrIowa_0869 cysteine desulfhydrase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RrIowa_0491 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
C 03050 Proteasome
C 03018 RNA degradation [PATH:rrj03018]
D RrIowa_0388 bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D RrIowa_0411 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RrIowa_0793 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RrIowa_0830 transcription termination factor rho K03628 rho; transcription termination factor Rho
D RrIowa_0733 metal-dependent hydrolase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D RrIowa_0288 dnaK; chaperone protein K04043 dnaK; molecular chaperone DnaK
D RrIowa_1144 60 kDa chaperonin GROEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RrIowa_0024 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:rrj03030]
D RrIowa_1325 DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RrIowa_1419 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RrIowa_1561 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RrIowa_0262 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RrIowa_0293 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RrIowa_1577 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RrIowa_0695 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RrIowa_0952 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RrIowa_1555 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RrIowa_1519 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D RrIowa_1321 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RrIowa_0321 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RrIowa_1307 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:rrj03410]
D RrIowa_1356 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RrIowa_0572 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D RrIowa_1236 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RrIowa_1536 uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D RrIowa_1223 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RrIowa_0417 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RrIowa_0828 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RrIowa_1307 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:rrj03420]
D RrIowa_1085 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RrIowa_1518 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D RrIowa_0322 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D RrIowa_1026 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D RrIowa_0744 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RrIowa_1307 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:rrj03430]
D RrIowa_0482 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D RrIowa_1592 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D RrIowa_0744 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RrIowa_1219 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RrIowa_0567 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RrIowa_0828 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RrIowa_1519 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D RrIowa_1419 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RrIowa_0695 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RrIowa_1561 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RrIowa_0293 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RrIowa_0262 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RrIowa_1325 DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RrIowa_1577 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RrIowa_1307 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:rrj03440]
D RrIowa_0828 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RrIowa_1519 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D RrIowa_0044 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF
D RrIowa_0963 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D RrIowa_0726 recR; recombination protein K06187 recR; recombination protein RecR
D RrIowa_1391 recA; RecA K03553 recA; recombination protein RecA
D RrIowa_0634 ruvA; Holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
D RrIowa_0637 ruvB; Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RrIowa_0199 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RrIowa_1071 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RrIowa_1419 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RrIowa_0695 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RrIowa_1561 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RrIowa_0293 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RrIowa_0262 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RrIowa_1325 DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RrIowa_1577 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RrIowa_0949 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:rrj02010]
D RrIowa_0158 ttg2D; toluene transport system protein K07323 mlaC; phospholipid transport system substrate-binding protein
D RrIowa_1319 ttg2C; toluene transport system protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RrIowa_0163 ABC transporter permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RrIowa_0165 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RrIowa_0023 periplasmic solute binding protein family K09815 znuA; zinc transport system substrate-binding protein
D RrIowa_1139 znuB; high-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein
D RrIowa_1511 znuC; high-affinity zinc uptake system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D RrIowa_0811 bioY; BioY K03523 bioY; biotin transport system substrate-specific component
D RrIowa_0004 O-antigen export system permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D RrIowa_0003 O-antigen export system ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D RrIowa_1281 lolE; lipoprotein releasing system transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D RrIowa_1282 lolD; lipoprotein releasing system ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RrIowa_1506 heme chaperone heme-lyase K02195 ccmC; heme exporter protein C
D RrIowa_0428 heme exporter protein B K02194 ccmB; heme exporter protein B
D RrIowa_1438 heme exporter protein A K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D RrIowa_1576 hypothetical protein K07091 lptF; lipopolysaccharide export system permease protein
D RrIowa_1403 hypothetical membrane spanning protein K11720 lptG; lipopolysaccharide export system permease protein
D RrIowa_0787 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RrIowa_0638 phospholipid-lipopolysaccharide ABC transporter K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RrIowa_0512 type I protein secretion ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:rrj03070]
D RrIowa_0370 type I secretion outer membrane protein K12340 tolC; outer membrane protein
D RrIowa_1064 secD; protein translocase subunit K03072 secD; preprotein translocase subunit SecD
D RrIowa_0194 secF; protein translocase subunit K03074 secF; preprotein translocase subunit SecF
D RrIowa_0217 secE; protein translocase subunit K03073 secE; preprotein translocase subunit SecE
D RrIowa_0141 secG; protein translocase subunit K03075 secG; preprotein translocase subunit SecG
D RrIowa_1177 secY.2; protein translocase subunit K03076 secY; preprotein translocase subunit SecY
D RrIowa_1063 yajC; protein translocase subunit K03210 yajC; preprotein translocase subunit YajC
D RrIowa_0098 yidC; 60 kDa inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RrIowa_1045 secA; protein translocase subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RrIowa_1410 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor
D RrIowa_0130 secB; protein translocase subunit K03071 secB; preprotein translocase subunit SecB
D RrIowa_0263 signal recognition particle, subunit FFH/SRP54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RrIowa_1367 tatA; Sec-independent protein translocase protein K03116 tatA; sec-independent protein translocase protein TatA
D RrIowa_1424 tatC; Sec-independent protein translocase protein K03118 tatC; sec-independent protein translocase protein TatC
D RrIowa_0177 virB3; channel protein K03198 virB3; type IV secretion system protein VirB3
D RrIowa_0463 virB9.1; channel protein K03204 virB9; type IV secretion system protein VirB9
D RrIowa_0467 virB9.2; channel protein K03204 virB9; type IV secretion system protein VirB9
D RrIowa_0179 virB6.1; channel protein K03201 virB6; type IV secretion system protein VirB6
D RrIowa_0180 virB6.2; channel protein K03201 virB6; type IV secretion system protein VirB6
D RrIowa_0181 virB6.3; channel protein K03201 virB6; type IV secretion system protein VirB6
D RrIowa_0182 virB6.4; channel protein K03201 virB6; type IV secretion system protein VirB6
D RrIowa_0183 virB6.5; channel protein K03201 virB6; type IV secretion system protein VirB6
D RrIowa_0464 virB8.1; channel protein K03203 virB8; type IV secretion system protein VirB8
D RrIowa_0466 virB8.2; channel protein K03203 virB8; type IV secretion system protein VirB8
D RrIowa_0468 virB10; channel protein K03195 virB10; type IV secretion system protein VirB10
D RrIowa_0178 virB4.1; VirB4 ATPase K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RrIowa_1427 virB4.2; VirB4 ATPase K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RrIowa_0469 virB11; virB11 ATPase K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D RrIowa_0470 virD4; protein virD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:rrj02020]
D RrIowa_0706 envZ; osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D RrIowa_0707 ompR; transcriptional regulatory protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D RrIowa_0207 degP.1; endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D RrIowa_0412 heme O monooxygenase (ferredoxin) K02259 COX15; heme a synthase [EC:1.17.99.9]
D RrIowa_1088 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D RrIowa_0764 protein U precursor K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RrIowa_0773 protein U precursor K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RrIowa_0801 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RrIowa_1124 ntrY; nitrogen regulation protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D RrIowa_1010 ntrX; nitrogen assimilation regulatory protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D RrIowa_0376 sensory transduction protein kinase K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D RrIowa_0389 GGDEF family protein K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65]
D RrIowa_0131 ctrA; cell cycle transcriptional regulator K13584 ctrA; two-component system, cell cycle response regulator CtrA
D RrIowa_0430 ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D RrIowa_0431 cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D RrIowa_0433 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D RrIowa_0407 cytochrome c K08738 CYC; cytochrome c
D RrIowa_0349 cyanide-insensitive cytochrome bd-type quinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RrIowa_0350 cyanide-insensitive cytochrome bd-type quinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RrIowa_0370 type I secretion outer membrane protein K12340 tolC; outer membrane protein
D RrIowa_0548 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D RrIowa_0430 ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:rrj02024]
D RrIowa_0098 yidC; 60 kDa inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RrIowa_0217 secE; protein translocase subunit K03073 secE; preprotein translocase subunit SecE
D RrIowa_0141 secG; protein translocase subunit K03075 secG; preprotein translocase subunit SecG
D RrIowa_1177 secY.2; protein translocase subunit K03076 secY; preprotein translocase subunit SecY
D RrIowa_1063 yajC; protein translocase subunit K03210 yajC; preprotein translocase subunit YajC
D RrIowa_1045 secA; protein translocase subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RrIowa_1410 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor
D RrIowa_0130 secB; protein translocase subunit K03071 secB; preprotein translocase subunit SecB
D RrIowa_0263 signal recognition particle, subunit FFH/SRP54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
D RrIowa_1554 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:rrj01501]
D RrIowa_0854 ampG.2; AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RrIowa_0640 ampG.1; AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RrIowa_0370 type I secretion outer membrane protein K12340 tolC; outer membrane protein
D RrIowa_1455 multimodular transpeptidase-transglycosylase PBP 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RrIowa_1014 cell elongation specific D,D-transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RrIowa_1017 ftsI; division specific D,D-transpeptidase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:rrj01502]
D RrIowa_0403 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RrIowa_0162 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RrIowa_1082 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RrIowa_1081 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RrIowa_0668 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rrj01503]
D RrIowa_0207 degP.1; endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D RrIowa_0370 type I secretion outer membrane protein K12340 tolC; outer membrane protein
D RrIowa_0007 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:rrj01000]
C 01001 Protein kinases [BR:rrj01001]
D RrIowa_0706 envZ; osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D RrIowa_1124 ntrY; nitrogen regulation protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D RrIowa_0376 sensory transduction protein kinase K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:rrj01009]
D RrIowa_1527 htpG; chaperone protein K04079 HSP90A; molecular chaperone HtpG
C 01002 Peptidases and inhibitors [BR:rrj01002]
D RrIowa_0664 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RrIowa_0659 glutamine amidotransferase, class I K07010 K07010; putative glutamine amidotransferase
D RrIowa_0226 cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RrIowa_1579 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RrIowa_1498 methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RrIowa_0863 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D RrIowa_0283 thermostable carboxypeptidase 1 K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D RrIowa_0089 ftsH; cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RrIowa_0251 membrane endopeptidase, M50 family K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D RrIowa_0207 degP.1; endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D RrIowa_0456 protease II K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D RrIowa_0641 D-alanyl-D-alanine serine-type carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RrIowa_0885 clpP; ATP-dependent endopeptidase clp proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D RrIowa_0750 ATP-dependent endopeptidase Lon K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D RrIowa_0196 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RrIowa_0375 carboxy-terminal processing protease precursor K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D RrIowa_0831 sppA.2; signal peptide peptidase K04773 sppA; protease IV [EC:3.4.21.-]
D RrIowa_0517 hslV; ATP-dependent endopeptidase hsl proteolytic subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D RrIowa_1209 ecotin precursor K08276 eco; ecotin
D RrIowa_0206 hflC; protease activity modulator K04087 hflC; modulator of FtsH protease HflC
D RrIowa_0205 hflK; protease activity modulator K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:rrj01003]
D RrIowa_1455 multimodular transpeptidase-transglycosylase PBP 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:rrj01005]
D RrIowa_0007 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RrIowa_0525 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RrIowa_0409 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D RrIowa_0009 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RrIowa_1323 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D RrIowa_1303 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RrIowa_1302 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RrIowa_0151 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RrIowa_0115 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RrIowa_0624 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RrIowa_0791 arabinose-5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rrj01011]
D RrIowa_1050 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RrIowa_0402 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RrIowa_0401 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RrIowa_0666 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RrIowa_1084 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RrIowa_0403 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RrIowa_0162 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RrIowa_1081 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RrIowa_0668 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RrIowa_1068 mviN; virulence factor K03980 murJ; putative peptidoglycan lipid II flippase
D RrIowa_1455 multimodular transpeptidase-transglycosylase PBP 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RrIowa_1014 cell elongation specific D,D-transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RrIowa_1017 ftsI; division specific D,D-transpeptidase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RrIowa_0641 D-alanyl-D-alanine serine-type carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RrIowa_0654 soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D RrIowa_0527 hypothetical membrane associated protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D RrIowa_0642 lipoprotein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D RrIowa_1588 anhydro-N-acetylmuramyl-tripeptide amidase-like protein K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:rrj01004]
D RrIowa_1330 malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RrIowa_1407 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RrIowa_1394 3-oxoacyl-[acyl-carrier-protein] synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RrIowa_1392 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RrIowa_0008 (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RrIowa_0588 enoyl-[acyl-carrier protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RrIowa_0082 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D RrIowa_0843 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:rrj01006]
D RrIowa_0859 farnesyl pyrophosphate synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RrIowa_0705 undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RrIowa_0784 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RrIowa_1250 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D RrIowa_0560 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:rrj01007]
D RrIowa_0600 class 1 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D RrIowa_1141 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RrIowa_0535 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RrIowa_0975 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RrIowa_0842 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RrIowa_0144 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RrIowa_0123 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RrIowa_1247 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RrIowa_1130 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RrIowa_1254 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RrIowa_0700 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RrIowa_0229 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RrIowa_0493 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RrIowa_1542 glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RrIowa_1541 glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RrIowa_1425 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RrIowa_0631 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RrIowa_0357 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RrIowa_1552 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RrIowa_0693 phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RrIowa_0694 phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RrIowa_0153 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RrIowa_1528 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RrIowa_0708 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:rrj00194]
D RrIowa_1444 ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RrIowa_1445 ATP synthase beta chain K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RrIowa_1446 ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RrIowa_1447 ATP synthase alpha chain K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RrIowa_1448 ATP synthase delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RrIowa_0036 ATP synthase B' chain K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RrIowa_0035 ATP synthase B chain K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RrIowa_0037 ATP synthase C chain K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RrIowa_0038 ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RrIowa_0039 hypothetical protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:rrj03000]
D RrIowa_0870 Rrf2 family protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D RrIowa_0973 Rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D RrIowa_0818 biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RrIowa_1433 transcriptional repressor K07726 K07726; putative transcriptional regulator
D RrIowa_1061 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D RrIowa_0399 bolA.1; BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D RrIowa_0112 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RrIowa_0041 carD-like transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D RrIowa_0061 algH; transcriptional regulator K07735 algH; putative transcriptional regulator
D RrIowa_1485 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D RrIowa_1021 mraZ; cell division protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:rrj03021]
D RrIowa_1173 DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RrIowa_0223 DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RrIowa_0224 DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RrIowa_1049 DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RrIowa_1554 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D RrIowa_0488 RNA polymerase sigma-32 factor K03089 rpoH; RNA polymerase sigma-32 factor
D RrIowa_0968 N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
D RrIowa_0252 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D RrIowa_0218 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D RrIowa_1485 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D RrIowa_1557 greA; transcription elongation factor K03624 greA; transcription elongation factor GreA
D RrIowa_0830 transcription termination factor rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:rrj03019]
D RrIowa_0411 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RrIowa_0197 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RrIowa_0733 metal-dependent hydrolase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D RrIowa_0793 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RrIowa_0830 transcription termination factor rho K03628 rho; transcription termination factor Rho
D RrIowa_0288 dnaK; chaperone protein K04043 dnaK; molecular chaperone DnaK
D RrIowa_1144 60 kDa chaperonin GROEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RrIowa_0024 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D RrIowa_0388 bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
C 03041 Spliceosome
C 03011 Ribosome [BR:rrj03011]
D RrIowa_0886 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1
D RrIowa_0145 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D RrIowa_1191 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D RrIowa_0559 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D RrIowa_1180 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D RrIowa_0084 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6
D RrIowa_0214 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7
D RrIowa_1183 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8
D RrIowa_0381 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9
D RrIowa_1198 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D RrIowa_1174 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11
D RrIowa_0213 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D RrIowa_1175 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13
D RrIowa_1184 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14
D RrIowa_0794 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D RrIowa_1590 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16
D RrIowa_1188 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D RrIowa_0085 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18
D RrIowa_1193 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D RrIowa_1171 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20
D RrIowa_1126 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21
D RrIowa_0220 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1
D RrIowa_1194 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2
D RrIowa_1197 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D RrIowa_1196 LSU ribosomal protein L1E (= L4P) K02926 RP-L4; large subunit ribosomal protein L4
D RrIowa_1185 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5
D RrIowa_1182 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D RrIowa_0086 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9
D RrIowa_0221 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10
D RrIowa_0219 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D RrIowa_0222 LSU ribosomal protein L12P (L7/L12) K02935 RP-L7; large subunit ribosomal protein L7/L12
D RrIowa_0380 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D RrIowa_1187 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D RrIowa_1178 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D RrIowa_1190 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16
D RrIowa_1172 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17
D RrIowa_1181 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D RrIowa_0192 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19
D RrIowa_1110 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D RrIowa_1369 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21
D RrIowa_1192 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D RrIowa_1195 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23
D RrIowa_1186 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D RrIowa_1370 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27
D RrIowa_0172 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28
D RrIowa_1189 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D RrIowa_1179 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D RrIowa_0173 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D RrIowa_1408 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32
D RrIowa_1591 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33
D RrIowa_1111 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D RrIowa_1109 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D RrIowa_0923 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36
D RrIowa_1107 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25
D RrIowa_0340 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D RrIowa_1119 Small Subunit Ribosomal RNA; ssuRNA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RrIowa_0339 Large Subunit Ribosomal RNA; lsuRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:rrj03009]
D RrIowa_0197 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RrIowa_0198 era; GTP-binding protein K03595 era; GTPase
D RrIowa_1532 cgtA; GTP-binding protein (probably involved in DNA repair) K03979 obgE; GTPase [EC:3.6.5.-]
D RrIowa_1485 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D RrIowa_0968 N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
D RrIowa_0252 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D RrIowa_0218 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D RrIowa_1216 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D RrIowa_0960 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D RrIowa_0258 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D RrIowa_0110 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RrIowa_1020 mraW; S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D RrIowa_1365 tetrapyrrole (corrin/porphyrin) methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D RrIowa_0974 hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D RrIowa_1202 23S rRNA Gm2251 methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D RrIowa_0253 23S rRNA Um2552 2'-O-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D RrIowa_1305 protein involved in external DNA uptake K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D RrIowa_0958 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RrIowa_0413 hypothetical protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D RrIowa_1537 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D RrIowa_0565 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
D RrIowa_0411 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RrIowa_0544 hypothetical cytosolic protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D RrIowa_1225 GTP-binding protein K03977 engA; GTPase
D RrIowa_0723 hypothetical protein K02834 rbfA; ribosome-binding factor A
D RrIowa_0969 hypothetical cytosolic protein K09748 rimP; ribosome maturation factor RimP
D RrIowa_1467 iojap protein family K09710 ybeB; ribosome-associated protein
D RrIowa_1350 hypothetical metal-binding protein K07042 ybeY; probable rRNA maturation factor
D RrIowa_1103 GTP-binding protein, probable translation factor K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:rrj03016]
D RrIowa_1141 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RrIowa_0535 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RrIowa_0631 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RrIowa_1130 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RrIowa_0700 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RrIowa_1247 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RrIowa_0123 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RrIowa_0229 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RrIowa_1552 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RrIowa_0357 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RrIowa_1425 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RrIowa_0144 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RrIowa_1254 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RrIowa_0493 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RrIowa_0693 phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RrIowa_0694 phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RrIowa_0975 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RrIowa_0842 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RrIowa_0514 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RrIowa_1553 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RrIowa_0795 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D RrIowa_0868 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RrIowa_0869 cysteine desulfhydrase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RrIowa_0784 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RrIowa_1383 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D RrIowa_0109 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RrIowa_0480 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D RrIowa_1112 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RrIowa_1155 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D RrIowa_0702 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D RrIowa_0908 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D RrIowa_0113 ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
D RrIowa_0600 class 1 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D RrIowa_1542 glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RrIowa_1541 glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RrIowa_1507 tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D RrIowa_0019 tRNA-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D RrIowa_1456 tRNA 2-methylthioadenosine synthase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D RrIowa_0692 tRNA 2-methylthioadenosine synthase-like protein K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D RrIowa_0200 rRNA methylase, SpoU family K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D RrIowa_0191 tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D RrIowa_0491 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RrIowa_0866 HesB protein family K13628 iscA; iron-sulfur cluster assembly protein
D RrIowa_0906 aminomethyltransferase family protein K06980 ygfZ; tRNA-modifying protein YgfZ
D RrIowa_0343 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D RrIowa_1274 queC; queuosine biosynthesis protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D RrIowa_0279 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D RrIowa_1108 queE; queuosine biosynthesis protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D RrIowa_0132 queF; queuosine biosynthesis protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D RrIowa_1545 hypothetical cytosolic protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D RrIowa_1308 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D RrIowa_0088 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D RrIowa_0965 glycoprotease family protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D RrIowa_0081 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D RrIowa_0022 ATP/GTP hydrolase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D RrIowa_0793 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:rrj03012]
D RrIowa_0967 bacterial protein translation initiation factor 2 (IF-2) K02519 infB; translation initiation factor IF-2
D RrIowa_0825 bacterial protein translation initiation factor 3 (IF-3) K02520 infC; translation initiation factor IF-3
D RrIowa_0146 protein translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D RrIowa_1199 protein translation elongation factor Tu (EF-TU) K02358 tuf; elongation factor Tu
D RrIowa_0215 protein translation elongation factor G (EF-G) K02355 fusA; elongation factor G
D RrIowa_0827 bacterial peptide chain release factor 1 (RF-1) K02835 prfA; peptide chain release factor 1
D RrIowa_0241 ribosome recycling factor (RRF) K02838 frr; ribosome recycling factor
D RrIowa_1540 peptide release factor-glutamine N5-methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D RrIowa_1106 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D RrIowa_1483 bacterial protein translation initiation factor 1 (IF-1) K02518 infA; translation initiation factor IF-1
D RrIowa_0390 protein translation elongation factor P (EF-P) K02356 efp; elongation factor P
D RrIowa_0442 bacterial peptide chain release factor 2 (RF-2) K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:rrj03110]
D RrIowa_0079 clpB; ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D RrIowa_1272 ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D RrIowa_0518 hslU; ATP-dependent endopeptidase hsl ATP-binding subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D RrIowa_1527 htpG; chaperone protein K04079 HSP90A; molecular chaperone HtpG
D RrIowa_0288 dnaK; chaperone protein K04043 dnaK; molecular chaperone DnaK
D RrIowa_0319 hscA; chaperone protein K04044 hscA; molecular chaperone HscA
D RrIowa_1144 60 kDa chaperonin GROEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RrIowa_0287 dnaJ; chaperone protein K03686 dnaJ; molecular chaperone DnaJ
D RrIowa_0320 hscB; chaperone protein K04082 hscB; molecular chaperone HscB
D RrIowa_1156 grpE; GrpE K03687 GRPE; molecular chaperone GrpE
D RrIowa_1145 10 kDa chaperonin GROES K04078 groES; chaperonin GroES
D RrIowa_0207 degP.1; endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D RrIowa_0089 ftsH; cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RrIowa_0038 ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RrIowa_0130 secB; protein translocase subunit K03071 secB; preprotein translocase subunit SecB
D RrIowa_1027 hypothetical exported protein K09796 pccA; periplasmic copper chaperone A
D RrIowa_0002 thioredoxin K03671 TXN; thioredoxin
D RrIowa_0323 glutaredoxin K03676 grxC; glutaredoxin 3
D RrIowa_1355 glutaredoxin K07390 grxD; monothiol glutaredoxin
C 04131 Membrane trafficking [BR:rrj04131]
D RrIowa_0108 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RrIowa_1527 htpG; chaperone protein K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:rrj04121]
C 03051 Proteasome [BR:rrj03051]
D RrIowa_1527 htpG; chaperone protein K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:rrj03032]
D RrIowa_1321 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RrIowa_0261 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D RrIowa_1299 integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
D RrIowa_1088 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D RrIowa_0952 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RrIowa_1555 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RrIowa_1519 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D RrIowa_1419 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RrIowa_0695 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RrIowa_1577 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RrIowa_0293 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RrIowa_0262 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RrIowa_1325 DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RrIowa_1561 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RrIowa_0321 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RrIowa_1307 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RrIowa_0329 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RrIowa_1051 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RrIowa_0126 topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RrIowa_0374 topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RrIowa_0536 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:rrj03036]
D RrIowa_0197 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RrIowa_0261 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D RrIowa_1299 integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
D RrIowa_1088 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D RrIowa_1450 non-specific DNA-binding protein Dps K04047 dps; starvation-inducible DNA-binding protein
D RrIowa_0405 ftsA; cell division protein K03590 ftsA; cell division protein FtsA
D RrIowa_1017 ftsI; division specific D,D-transpeptidase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RrIowa_1496 ftsK; cell division protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D RrIowa_1019 hypothetical protein K03586 ftsL; cell division protein FtsL
D RrIowa_0404 ftsQ; cell division protein K03589 ftsQ; cell division protein FtsQ
D RrIowa_0667 ftsW; cell division protein K03588 ftsW; cell division protein FtsW
D RrIowa_1207 ftsZ; cell division protein K03531 ftsZ; cell division protein FtsZ
D RrIowa_0342 ATPase K06916 zapE; cell division protein ZapE
D RrIowa_1402 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RrIowa_1401 mreC; rod shape-determining protein K03570 mreC; rod shape-determining protein MreC
D RrIowa_0455 rodA; rod shape-determining protein K05837 rodA; rod shape determining protein RodA
D RrIowa_0111 parA; chromosome partitioning protein K03496 parA; chromosome partitioning protein
D RrIowa_0227 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D RrIowa_0112 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RrIowa_0126 topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RrIowa_0374 topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RrIowa_0109 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RrIowa_0110 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RrIowa_1486 integrase/recombinase (XerC/CodV family) K03733 xerC; integrase/recombinase XerC
D RrIowa_0585 integrase/recombinase (XerD/RipX family) K04763 xerD; integrase/recombinase XerD
D RrIowa_0204 apbC; iron-sulfur cluster assembly/repair protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RrIowa_0632 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D RrIowa_0175 yihA; GTP-binding protein K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:rrj03400]
D RrIowa_1032 ADA regulatory protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RrIowa_0572 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D RrIowa_1356 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RrIowa_0653 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RrIowa_1536 uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D RrIowa_1236 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RrIowa_1223 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RrIowa_0417 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RrIowa_0828 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RrIowa_1307 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RrIowa_1518 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D RrIowa_0322 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D RrIowa_1026 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D RrIowa_0744 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RrIowa_0223 DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RrIowa_0224 DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RrIowa_1173 DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RrIowa_1049 DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RrIowa_1085 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RrIowa_0482 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D RrIowa_1592 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D RrIowa_1219 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RrIowa_0567 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RrIowa_1419 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RrIowa_0695 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RrIowa_1577 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RrIowa_0293 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RrIowa_0262 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RrIowa_1325 DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RrIowa_1561 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RrIowa_1519 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D RrIowa_1391 recA; RecA K03553 recA; recombination protein RecA
D RrIowa_0634 ruvA; Holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
D RrIowa_0637 ruvB; Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RrIowa_0199 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RrIowa_0949 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RrIowa_0961 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms
D RrIowa_0044 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF
D RrIowa_1071 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RrIowa_0963 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D RrIowa_0726 recR; recombination protein K06187 recR; recombination protein RecR
D RrIowa_0284 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D RrIowa_1327 ATP-dependent nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D RrIowa_0657 ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D RrIowa_0329 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RrIowa_1051 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RrIowa_0536 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RrIowa_0261 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D RrIowa_1299 integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
D RrIowa_0776 ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RrIowa_0779 ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:rrj03029]
D RrIowa_0431 cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D RrIowa_0967 bacterial protein translation initiation factor 2 (IF-2) K02519 infB; translation initiation factor IF-2
D RrIowa_0825 bacterial protein translation initiation factor 3 (IF-3) K02520 infC; translation initiation factor IF-3
D RrIowa_0146 protein translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D RrIowa_1199 protein translation elongation factor Tu (EF-TU) K02358 tuf; elongation factor Tu
D RrIowa_0215 protein translation elongation factor G (EF-G) K02355 fusA; elongation factor G
D RrIowa_0198 era; GTP-binding protein K03595 era; GTPase
D RrIowa_0975 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RrIowa_0700 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RrIowa_0229 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RrIowa_0123 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RrIowa_0237 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RrIowa_0236 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RrIowa_0238 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RrIowa_1519 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D RrIowa_0250 yaeT; outer membrane protein assembly factor K07277 SAM50; outer membrane protein insertion porin family
D RrIowa_0288 dnaK; chaperone protein K04043 dnaK; molecular chaperone DnaK
D RrIowa_1156 grpE; GrpE K03687 GRPE; molecular chaperone GrpE
D RrIowa_1144 60 kDa chaperonin GROEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RrIowa_1145 10 kDa chaperonin GROES K04078 groES; chaperonin GroES
D RrIowa_0287 dnaJ; chaperone protein K03686 dnaJ; molecular chaperone DnaJ
D RrIowa_0868 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RrIowa_0869 cysteine desulfhydrase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RrIowa_0320 hscB; chaperone protein K04082 hscB; molecular chaperone HscB
D RrIowa_1355 glutaredoxin K07390 grxD; monothiol glutaredoxin
D RrIowa_0094 hypothetical cytosolic protein K18164 NDUFAF7; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
D RrIowa_0204 apbC; iron-sulfur cluster assembly/repair protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RrIowa_0560 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RrIowa_0489 ctaG; cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D RrIowa_0412 heme O monooxygenase (ferredoxin) K02259 COX15; heme a synthase [EC:1.17.99.9]
D RrIowa_0098 yidC; 60 kDa inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RrIowa_1326 cytochrome c oxidase assembly protein Surf1 K14998 SURF1; surfeit locus 1 family protein
D RrIowa_1065 cytochrome c oxidase Cu(A) center assembly protein K07152 SCO1; protein SCO1
D RrIowa_0060 cytochrome c oxidase Cu(A) center assembly protein K07152 SCO1; protein SCO1
D RrIowa_1527 htpG; chaperone protein K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:rrj02000]
D RrIowa_0638 phospholipid-lipopolysaccharide ABC transporter K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RrIowa_0326 multidrug resistance ABC transporter ATP-binding and permease protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RrIowa_1278 hypothetical protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RrIowa_0347 multidrug resistance ABC transporter ATP-binding and permease protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RrIowa_0512 type I protein secretion ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D RrIowa_1395 ABC transporter ATP-binding protein uup K15738 uup; ABC transport system ATP-binding/permease protein
D RrIowa_1319 ttg2C; toluene transport system protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RrIowa_0163 ABC transporter permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RrIowa_0165 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RrIowa_0158 ttg2D; toluene transport system protein K07323 mlaC; phospholipid transport system substrate-binding protein
D RrIowa_0592 ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D RrIowa_0593 ABC transporter permease protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D RrIowa_0594 ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D RrIowa_0235 glutamine-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D RrIowa_0212 hypothetical protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D RrIowa_1571 hypothetical protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D RrIowa_0023 periplasmic solute binding protein family K09815 znuA; zinc transport system substrate-binding protein
D RrIowa_1139 znuB; high-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein
D RrIowa_1511 znuC; high-affinity zinc uptake system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D RrIowa_0811 bioY; BioY K03523 bioY; biotin transport system substrate-specific component
D RrIowa_0004 O-antigen export system permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D RrIowa_0003 O-antigen export system ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D RrIowa_1576 hypothetical protein K07091 lptF; lipopolysaccharide export system permease protein
D RrIowa_1403 hypothetical membrane spanning protein K11720 lptG; lipopolysaccharide export system permease protein
D RrIowa_0787 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RrIowa_1281 lolE; lipoprotein releasing system transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D RrIowa_1282 lolD; lipoprotein releasing system ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RrIowa_1506 heme chaperone heme-lyase K02195 ccmC; heme exporter protein C
D RrIowa_0428 heme exporter protein B K02194 ccmB; heme exporter protein B
D RrIowa_1438 heme exporter protein A K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D RrIowa_1597 hypothetical protein K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D RrIowa_0608 proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D RrIowa_0107 uhpC; regulatory protein K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D RrIowa_0854 ampG.2; AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RrIowa_0640 ampG.1; AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RrIowa_1280 multidrug resistance transporter, Bcr family K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RrIowa_0244 multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D RrIowa_0809 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RrIowa_0097 mechanosensitive ion channel K16053 ybdG; miniconductance mechanosensitive channel
D RrIowa_1054 mgtE; Mg2+ transporter K06213 mgtE; magnesium transporter
D RrIowa_0504 tolQ; TolQ K03562 tolQ; biopolymer transport protein TolQ
D RrIowa_0505 tolR; TolR K03560 tolR; biopolymer transport protein TolR
D RrIowa_1117 corA; magnesium and cobalt transport protein K03284 corA; magnesium transporter
D RrIowa_1285 corB; magnesium and cobalt efflux protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RrIowa_0370 type I secretion outer membrane protein K12340 tolC; outer membrane protein
D RrIowa_0250 yaeT; outer membrane protein assembly factor K07277 SAM50; outer membrane protein insertion porin family
D RrIowa_0285 lipoprotein, ComL family K05807 bamD; outer membrane protein assembly factor BamD
D RrIowa_0788 hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA
D RrIowa_0790 hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC
D RrIowa_1218 organic solvent tolerance protein K04744 lptD; LPS-assembly protein
D RrIowa_1349 hemolysin K06189 corC; hemolysin (HlyC) family protein
D RrIowa_1508 CzcD K13283 fieF; ferrous-iron efflux pump FieF
D RrIowa_0136 transporter, drug/metabolite exporter family K15270 sam; S-adenosylmethionine uptake transporter
D RrIowa_1585 nhaA; Na+/H+ antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D RrIowa_1466 kefC; glutathione-regulated potassium-efflux system protein K03455 KEA1_2_3; K+:H+ antiporter
D RrIowa_0427 shaA; ShaA K05566 mnhB; multicomponent Na+:H+ antiporter subunit B
D RrIowa_0462 shaC; sodium/proton antiporter protein K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D RrIowa_0457 NADH-quinone oxidoreductase chain L family protein K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D RrIowa_0460 shaA; sodium/proton antiporter protein K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D RrIowa_0461 shaD; sodium/proton antiporter protein K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D RrIowa_0243 shaE; sodium/proton antiporter protein K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D RrIowa_0426 shaG; sodium/proton antiporter protein K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D RrIowa_1068 mviN; virulence factor K03980 murJ; putative peptidoglycan lipid II flippase
D RrIowa_0601 transporter K13936 mdcF; malonate transporter and related proteins
D RrIowa_0735 auxin efflux carrier family protein K24180 mleP; malate permease and related proteins
D RrIowa_0852 transporter, LysE family K06895 lysE; L-lysine exporter family protein LysE/ArgO
D RrIowa_0667 ftsW; cell division protein K03588 ftsW; cell division protein FtsW
D RrIowa_0645 high-affinity iron permease K07243 FTR; high-affinity iron transporter
D RrIowa_1405 peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D RrIowa_0487 tolB; TolB K03641 tolB; TolB protein
D RrIowa_0395 multidrug resistance protein A K03543 emrA; membrane fusion protein, multidrug efflux system
D RrIowa_0511 type I secretion adaptor protein (HlyD family) K12537 hasE; membrane fusion protein, type I secretion system
D RrIowa_1362 entericidin B-like protein K16348 ecnB; entericidin B
D RrIowa_1286 heme chaperone--apocytochrome heme-lyase K02198 ccmF; cytochrome c-type biogenesis protein CcmF
C 02044 Secretion system [BR:rrj02044]
D RrIowa_0370 type I secretion outer membrane protein K12340 tolC; outer membrane protein
D RrIowa_0512 type I protein secretion ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D RrIowa_0511 type I secretion adaptor protein (HlyD family) K12537 hasE; membrane fusion protein, type I secretion system
D RrIowa_0177 virB3; channel protein K03198 virB3; type IV secretion system protein VirB3
D RrIowa_0178 virB4.1; VirB4 ATPase K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RrIowa_1427 virB4.2; VirB4 ATPase K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RrIowa_0179 virB6.1; channel protein K03201 virB6; type IV secretion system protein VirB6
D RrIowa_0180 virB6.2; channel protein K03201 virB6; type IV secretion system protein VirB6
D RrIowa_0181 virB6.3; channel protein K03201 virB6; type IV secretion system protein VirB6
D RrIowa_0182 virB6.4; channel protein K03201 virB6; type IV secretion system protein VirB6
D RrIowa_0183 virB6.5; channel protein K03201 virB6; type IV secretion system protein VirB6
D RrIowa_0464 virB8.1; channel protein K03203 virB8; type IV secretion system protein VirB8
D RrIowa_0466 virB8.2; channel protein K03203 virB8; type IV secretion system protein VirB8
D RrIowa_0463 virB9.1; channel protein K03204 virB9; type IV secretion system protein VirB9
D RrIowa_0467 virB9.2; channel protein K03204 virB9; type IV secretion system protein VirB9
D RrIowa_0468 virB10; channel protein K03195 virB10; type IV secretion system protein VirB10
D RrIowa_0469 virB11; virB11 ATPase K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D RrIowa_0470 virD4; protein virD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D RrIowa_0764 protein U precursor K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RrIowa_0773 protein U precursor K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RrIowa_1045 secA; protein translocase subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RrIowa_0130 secB; protein translocase subunit K03071 secB; preprotein translocase subunit SecB
D RrIowa_1064 secD; protein translocase subunit K03072 secD; preprotein translocase subunit SecD
D RrIowa_0217 secE; protein translocase subunit K03073 secE; preprotein translocase subunit SecE
D RrIowa_0194 secF; protein translocase subunit K03074 secF; preprotein translocase subunit SecF
D RrIowa_0141 secG; protein translocase subunit K03075 secG; preprotein translocase subunit SecG
D RrIowa_1177 secY.2; protein translocase subunit K03076 secY; preprotein translocase subunit SecY
D RrIowa_0263 signal recognition particle, subunit FFH/SRP54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RrIowa_1410 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor
D RrIowa_1063 yajC; protein translocase subunit K03210 yajC; preprotein translocase subunit YajC
D RrIowa_0098 yidC; 60 kDa inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RrIowa_1367 tatA; Sec-independent protein translocase protein K03116 tatA; sec-independent protein translocase protein TatA
D RrIowa_1424 tatC; Sec-independent protein translocase protein K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:rrj02042]
D RrIowa_1285 corB; magnesium and cobalt efflux protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:rrj02022]
D RrIowa_0706 envZ; osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D RrIowa_0707 ompR; transcriptional regulatory protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D RrIowa_1124 ntrY; nitrogen regulation protein K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D RrIowa_1010 ntrX; nitrogen assimilation regulatory protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D RrIowa_0376 sensory transduction protein kinase K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D RrIowa_0389 GGDEF family protein K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65]
D RrIowa_0131 ctrA; cell cycle transcriptional regulator K13584 ctrA; two-component system, cell cycle response regulator CtrA
C 02035 Bacterial motility proteins [BR:rrj02035]
D RrIowa_0764 protein U precursor K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RrIowa_0773 protein U precursor K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:rrj04812]
D RrIowa_1402 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RrIowa_1207 ftsZ; cell division protein K03531 ftsZ; cell division protein FtsZ
D RrIowa_0405 ftsA; cell division protein K03590 ftsA; cell division protein FtsA
D RrIowa_0111 parA; chromosome partitioning protein K03496 parA; chromosome partitioning protein
D RrIowa_0227 ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D RrIowa_0112 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:rrj04147]
D RrIowa_1527 htpG; chaperone protein K04079 HSP90A; molecular chaperone HtpG
D RrIowa_0540 thioredoxin peroxidase K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D RrIowa_1144 60 kDa chaperonin GROEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RrIowa_0288 dnaK; chaperone protein K04043 dnaK; molecular chaperone DnaK
D RrIowa_1199 protein translation elongation factor Tu (EF-TU) K02358 tuf; elongation factor Tu
D RrIowa_0514 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RrIowa_1176 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RrIowa_0801 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RrIowa_0945 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RrIowa_0912 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RrIowa_1449 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 02048 Prokaryotic defense system [BR:rrj02048]
D RrIowa_0006 PEMK-like protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D RrIowa_1061 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D RrIowa_1570 relB.3; RelB K18923 stbD; antitoxin StbD
D RrIowa_1575 yafQ; DNA damage inducible protein K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D RrIowa_1574 DNA-damage-inducible protein J K07473 dinJ; DNA-damage-inducible protein J
D RrIowa_0352 relE; RelE K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D RrIowa_0155 relB.1; RelB K19159 yefM; antitoxin YefM
D RrIowa_0351 relB.2; RelB K19159 yefM; antitoxin YefM
D RrIowa_1544 hypothetical protein K19165 phd; antitoxin Phd
D RrIowa_0545 virulence-associated protein I K21498 higA-1; antitoxin HigA-1
D RrIowa_1543 stbB; plasmid stability protein K07062 fitB; toxin FitB [EC:3.1.-.-]
D RrIowa_1207 ftsZ; cell division protein K03531 ftsZ; cell division protein FtsZ
D RrIowa_1402 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RrIowa_0126 topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RrIowa_0374 topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RrIowa_1141 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RrIowa_0535 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RrIowa_1086 hypothetical protein K09159 cptB; antitoxin CptB
D RrIowa_0868 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RrIowa_0869 cysteine desulfhydrase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:rrj01504]
D RrIowa_0661 hypothetical protein K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-]
D RrIowa_0370 type I secretion outer membrane protein K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:rrj03100]
D RrIowa_0884 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RrIowa_1041 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RrIowa_1525 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RrIowa_0860 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RrIowa_0979 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RrIowa_0444 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RrIowa_0756 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RrIowa_0584 tRNA-Trp K14222 tRNA-Cys; tRNA Cys
D RrIowa_0861 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RrIowa_0862 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RrIowa_0030 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RrIowa_1060 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RrIowa_1200 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RrIowa_1277 tRNA-His K14226 tRNA-His; tRNA His
D RrIowa_0626 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RrIowa_1214 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RrIowa_1578 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RrIowa_1053 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RrIowa_0625 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RrIowa_0382 tRNA-Met K14230 tRNA-Met; tRNA Met
D RrIowa_0174 tRNA-Met K14230 tRNA-Met; tRNA Met
D RrIowa_1404 tRNA-Met K14230 tRNA-Met; tRNA Met
D RrIowa_0018 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RrIowa_1482 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RrIowa_0841 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RrIowa_0926 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RrIowa_1334 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RrIowa_0249 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RrIowa_1589 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RrIowa_0140 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RrIowa_0216 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RrIowa_1201 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RrIowa_1170 tRNA-Val K14237 tRNA-Val; tRNA Val
D RrIowa_0889 tRNA-Val K14237 tRNA-Val; tRNA Val
D RrIowa_1119 Small Subunit Ribosomal RNA; ssuRNA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RrIowa_0339 Large Subunit Ribosomal RNA; lsuRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RrIowa_0340 5S RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D RrIowa_1301 thioredoxin peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D RrIowa_0589 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D RrIowa_0095 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D RrIowa_0001 ATP/GTP-binding protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D RrIowa_1246 DNase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D RrIowa_0591 anhydro-N-acetylmuramyl-tripeptide amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RrIowa_0336 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RrIowa_0105 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RrIowa_0802 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D RrIowa_1505 ferredoxin K05524 fdxA; ferredoxin
D RrIowa_0867 iscU; IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
D RrIowa_1233 ubiB; 2-polyprenylphenol 6-hydroxylase accessory protein K03688 ubiB; ubiquinone biosynthesis protein
D RrIowa_1127 hypothetical protein K18587 COQ9; ubiquinone biosynthesis protein COQ9
D RrIowa_0256 hypothetical cytosolic protein K18588 COQ10; coenzyme Q-binding protein COQ10
C 99988 Secondary metabolism
C 99999 Others
D RrIowa_1354 carboxylesterase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D RrIowa_1213 cold shock protein K03704 cspA; cold shock protein
C 99974 Translation
C 99975 Protein processing
D RrIowa_1531 trigger factor, ppiase K03545 tig; trigger factor
D RrIowa_0710 SsrA-binding protein K03664 smpB; SsrA-binding protein
D RrIowa_0521 chlI; ChlI K07391 comM; magnesium chelatase family protein
C 99976 Replication and repair
D RrIowa_1500 radC.2; DNA repair protein K03630 radC; DNA repair protein RadC
D RrIowa_1259 RmuC family protein K09760 rmuC; DNA recombination protein RmuC
C 99979 Viral proteins
C 99998 Others
D RrIowa_1562 hypothetical transcriptional regulatory protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D RrIowa_0492 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RrIowa_0864 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RrIowa_0260 acriflavin resistance plasma membrane protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D RrIowa_0106 ADP,ATP carrier protein K03301 TC.AAA; ATP:ADP antiporter, AAA family
D RrIowa_0796 ADP,ATP carrier protein K03301 TC.AAA; ATP:ADP antiporter, AAA family
D RrIowa_1346 ADP,ATP carrier protein K03301 TC.AAA; ATP:ADP antiporter, AAA family
C 99978 Cell growth
D RrIowa_0644 intracellular septation protein K06190 ispZ; intracellular septation protein
C 99993 Cell motility
C 99995 Signaling proteins
D RrIowa_0420 lepA.1; GTP-binding protein K06207 typA; GTP-binding protein
C 99992 Structural proteins
D RrIowa_0157 lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D RrIowa_0135 hypothetical protein K07275 ompW; outer membrane protein
D RrIowa_1066 cytochrome c-type biogenesis heme chaperone K02197 ccmE; cytochrome c-type biogenesis protein CcmE
C 99994 Others
D RrIowa_0278 cutA; periplasmic divalent cation tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein
D RrIowa_0528 frataxin family protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY
B
B 09194 Poorly characterized
C 99996 General function prediction only
D RrIowa_0286 chaB; cation transport regulator K06197 chaB; cation transport regulator
D RrIowa_0799 ribonuclease BN K07058 K07058; membrane protein
D RrIowa_0208 rhodanese-related sulfurtransferase K07146 K07146; UPF0176 protein
C 99997 Function unknown
D RrIowa_0373 hypothetical protein K06867 K06867; uncharacterized protein
D RrIowa_0344 hypothetical protein K06867 K06867; uncharacterized protein
D RrIowa_0273 hypothetical protein K06867 K06867; uncharacterized protein
D RrIowa_0596 hypothetical protein K06867 K06867; uncharacterized protein
D RrIowa_0555 alpha/beta hydrolase family protein K06889 K06889; uncharacterized protein
D RrIowa_0232 secY.1; stabilizing membrane protein K06890 K06890; uncharacterized protein
D RrIowa_0847 alpha/beta hydrolase K07018 K07018; uncharacterized protein
D RrIowa_0316 immunogenic protein K07080 K07080; uncharacterized protein
D RrIowa_1398 hypothetical ATPase K07133 K07133; uncharacterized protein
D RrIowa_0574 hypothetical cytosolic protein K08998 K08998; uncharacterized protein
D RrIowa_1526 hypothetical cytosolic protein K09131 K09131; uncharacterized protein
D RrIowa_0259 hypothetical protein K09779 K09779; uncharacterized protein
D RrIowa_0836 hypothetical cytosolic protein K09861 K09861; uncharacterized protein
D RrIowa_1322 hypothetical protein K09985 K09985; uncharacterized protein
D RrIowa_0133 hypothetical cytosolic protein K09987 K09987; uncharacterized protein
D RrIowa_0371 hypothetical protein K09991 K09991; uncharacterized protein
D RrIowa_0203 hypothetical protein K07276 K07276; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 23, 2024