+D GENES KO #

  KEGG Orthology (KO) - Rickettsia rickettsii R

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:rrr00010] D RRR_03600 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D RRR_01905 pyruvate dehydrogenase E1 subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D RRR_01910 pyruvate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D RRR_03690 branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RRR_04080 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_06325 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00020 Citrate cycle (TCA cycle) [PATH:rrr00020] D RRR_06710 gltA; type II citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D RRR_06295 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D RRR_01940 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D RRR_01270 MFS transporter K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D RRR_01260 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D RRR_04080 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_06325 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_03210 succinyl-CoA synthetase subsunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D RRR_03215 sucC; malate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RRR_00945 succinate dehydrogenase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RRR_00445 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RRR_00935 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit D RRR_00940 succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit D RRR_05245 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D RRR_02800 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RRR_01905 pyruvate dehydrogenase E1 subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D RRR_01910 pyruvate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D RRR_03690 branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway D RRR_02185 ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] C 00040 Pentose and glucuronate interconversions D RRR_06185 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] C 00051 Fructose and mannose metabolism [PATH:rrr00051] D RRR_03500 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D RRR_05390 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D RRR_02185 ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] C 00052 Galactose metabolism D RRR_02455 UDP-glucose 4-epimerase K17716 capD; UDP-glucose 4-epimerase [EC:5.1.3.2] C 00053 Ascorbate and aldarate metabolism D RRR_06185 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] C 00500 Starch and sucrose metabolism [PATH:rrr00500] D RRR_05655 ATP-dependent protease K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rrr00520] D RRR_04150 UDP-N-acetylglucosamine pyrophosphorylase K11528 glmU; UDP-N-acetylglucosamine pyrophosphorylase [EC:2.7.7.23] D RRR_04575 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RRR_01835 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RRR_02460 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D RRR_06185 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RRR_02455 UDP-glucose 4-epimerase K17716 capD; UDP-glucose 4-epimerase [EC:5.1.3.2] D RRR_03500 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D RRR_05390 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] C 00620 Pyruvate metabolism [PATH:rrr00620] D RRR_01905 pyruvate dehydrogenase E1 subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D RRR_01910 pyruvate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D RRR_03690 branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RRR_04080 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_06325 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_02720 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D RRR_02800 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RRR_05245 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D RRR_03600 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rrr00630] D RRR_02800 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RRR_06710 gltA; type II citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D RRR_06295 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D RRR_00345 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D RRR_04925 acetyl-CoA carboxylase K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3] D RRR_04930 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D RRR_03565 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RRR_05895 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RRR_04080 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_06325 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00640 Propanoate metabolism [PATH:rrr00640] D RRR_04080 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_06325 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_04925 acetyl-CoA carboxylase K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3] D RRR_04930 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D RRR_03215 sucC; malate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RRR_03210 succinyl-CoA synthetase subsunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] C 00650 Butanoate metabolism [PATH:rrr00650] D RRR_00345 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D RRR_00945 succinate dehydrogenase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RRR_00445 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RRR_00935 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit D RRR_00940 succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit D RRR_03335 succinate dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RRR_04660 succinyl-CoA:3-ketoacid-CoA transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D RRR_04665 succinyl-CoA:3-ketoacid-CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] C 00660 C5-Branched dibasic acid metabolism D RRR_03215 sucC; malate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RRR_03210 succinyl-CoA synthetase subsunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] C 00562 Inositol phosphate metabolism [PATH:rrr00562] D RRR_01780 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:rrr00190] D RRR_02605 NADH:ubiquinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D RRR_02600 NADH dehydrogenase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D RRR_02595 NADH dehydrogenase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D RRR_02590 NADH dehydrogenase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D RRR_02585 NADH dehydrogenase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D RRR_00875 NADH dehydrogenase K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D RRR_06285 NADH dehydrogenase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D RRR_06280 NADH:ubiquinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D RRR_06275 NADH dehydrogenase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D RRR_06250 NADH:ubiquinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D RRR_06255 NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D RRR_06260 NADH:ubiquinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D RRR_06265 NADH:ubiquinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D RRR_04205 NADH:ubiquinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D RRR_00945 succinate dehydrogenase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RRR_00445 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RRR_00935 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit D RRR_00940 succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit D RRR_01965 ubiquinol-cytochrome C reductase K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D RRR_01970 cytochrome B K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D RRR_01980 cytochrome C K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D RRR_02515 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D RRR_01340 cytochrome C oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D RRR_02980 cytochrome C oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D RRR_02995 cytochrome C oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D RRR_02215 cysteine synthase K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D RRR_01885 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D RRR_01580 cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D RRR_01585 cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D RRR_01860 cysteine desulfurase K08738 CYC; cytochrome c D RRR_06315 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D RRR_06305 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D RRR_06310 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D RRR_06320 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D RRR_06300 atpC; F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D RRR_00200 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D RRR_00180 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D RRR_00185 F0F1 ATP synthase subunit B' K02109 ATPF0B; F-type H+-transporting ATPase subunit b D RRR_00190 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D RRR_04635 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:rrr00710] D RRR_02185 ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D RRR_03600 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D RRR_02720 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D RRR_02800 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00720 Other carbon fixation pathways [PATH:rrr00720] D RRR_03600 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D RRR_02800 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RRR_05245 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D RRR_00945 succinate dehydrogenase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RRR_00445 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RRR_00935 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit D RRR_00940 succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit D RRR_03210 succinyl-CoA synthetase subsunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D RRR_03215 sucC; malate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RRR_01940 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D RRR_06295 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D RRR_03415 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] C 00680 Methane metabolism [PATH:rrr00680] D RRR_05895 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RRR_02800 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00910 Nitrogen metabolism [PATH:rrr00910] D RRR_06030 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D RRR_03565 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] C 00920 Sulfur metabolism D RRR_02175 3'-5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:rrr00061] D RRR_06065 acyl carrier protein K02078 acpP; acyl carrier protein D RRR_05785 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RRR_06135 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RRR_06070 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RRR_06060 3-oxoacyl-ACP synthase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RRR_00040 3-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D RRR_02640 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00062 Fatty acid elongation C 00071 Fatty acid degradation D RRR_04940 acylglycerophosphoethanolamine acyltransferase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism D RRR_03775 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 00564 Glycerophospholipid metabolism [PATH:rrr00564] D RRR_03315 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D RRR_03775 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RRR_06495 phosD; phospholipase D K17717 pld; phospholipase D [EC:3.1.4.4] D RRR_04940 acylglycerophosphoethanolamine acyltransferase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] D RRR_03170 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D RRR_01795 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D RRR_01790 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D RRR_00480 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D RRR_05965 phosphatidylglycerophosphatase K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] C 00565 Ether lipid metabolism D RRR_06495 phosD; phospholipase D K17717 pld; phospholipase D [EC:3.1.4.4] C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids [PATH:rrr01040] D RRR_00395 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:rrr00230] D RRR_01610 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D RRR_03570 laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D RRR_00530 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RRR_06095 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D RRR_03475 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RRR_03480 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D RRR_00580 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D RRR_02055 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K21138 HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2] D RRR_02140 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D RRR_05100 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00240 Pyrimidine metabolism [PATH:rrr00240] D RRR_01095 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D RRR_00530 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RRR_06475 septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D RRR_02820 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D RRR_03985 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D RRR_00610 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D RRR_03475 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RRR_03480 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D RRR_05450 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D RRR_02950 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RRR_02200 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:rrr00250] D RRR_00710 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RRR_03335 succinate dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RRR_06030 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D RRR_03565 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] C 00260 Glycine, serine and threonine metabolism [PATH:rrr00260] D RRR_05980 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RRR_02325 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RRR_05895 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RRR_06685 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D RRR_04080 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_06325 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_01795 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] C 00270 Cysteine and methionine metabolism [PATH:rrr00270] D RRR_03570 laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D RRR_05980 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RRR_02325 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RRR_03190 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RRR_00710 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RRR_02800 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00280 Valine, leucine and isoleucine degradation [PATH:rrr00280] D RRR_03190 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RRR_04080 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_06325 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_04925 acetyl-CoA carboxylase K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3] D RRR_04930 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D RRR_04660 succinyl-CoA:3-ketoacid-CoA transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D RRR_04665 succinyl-CoA:3-ketoacid-CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rrr00290] D RRR_03190 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00300 Lysine biosynthesis [PATH:rrr00300] D RRR_05980 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RRR_02325 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RRR_03195 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RRR_01055 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D RRR_01355 dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D RRR_06925 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D RRR_03110 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D RRR_04695 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RRR_04690 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:rrr00310] D RRR_01260 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D RRR_04080 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_06325 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_03335 succinate dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00220 Arginine biosynthesis [PATH:rrr00220] D RRR_03565 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RRR_06030 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D RRR_00710 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RRR_00805 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] C 00330 Arginine and proline metabolism D RRR_00710 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism C 00350 Tyrosine metabolism [PATH:rrr00350] D RRR_00710 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RRR_03335 succinate dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism D RRR_00710 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00380 Tryptophan metabolism D RRR_01260 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D RRR_04080 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_06325 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rrr00400] D RRR_00710 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism C 00430 Taurine and hypotaurine metabolism D RRR_06030 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] C 00440 Phosphonate and phosphinate metabolism D RRR_06890 beta-lactamase K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:rrr00450] D RRR_03330 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D RRR_03420 ferredoxin--NADP reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D RRR_05445 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:rrr00460] D RRR_05655 ATP-dependent protease K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RRR_05895 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:rrr00470] D RRR_00745 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RRR_01840 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RRR_03020 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RRR_03110 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] C 00480 Glutathione metabolism [PATH:rrr00480] D RRR_01025 aminopeptidase A K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D RRR_03610 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D RRR_01940 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:rrr00540] D RRR_00035 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D RRR_01870 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D RRR_00045 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D RRR_05750 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D RRR_02380 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D RRR_05685 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D RRR_03520 hypothetical protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D RRR_00565 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D RRR_02825 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D RRR_00700 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D RRR_05680 lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rrr00541] D RRR_02455 UDP-glucose 4-epimerase K17716 capD; UDP-glucose 4-epimerase [EC:5.1.3.2] D RRR_06185 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RRR_02450 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D RRR_03500 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D RRR_05390 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D RRR_02460 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] C 00550 Peptidoglycan biosynthesis [PATH:rrr00550] D RRR_04575 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RRR_01835 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RRR_01830 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D RRR_03020 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RRR_04695 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RRR_01840 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RRR_04690 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D RRR_03175 UDP pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D RRR_04685 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RRR_03030 UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D RRR_06360 peptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RRR_04450 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D RRR_04460 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D RRR_02905 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] C 00552 Teichoic acid biosynthesis C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:rrr00730] D RRR_03900 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RRR_03905 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RRR_05100 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism D RRR_04230 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism C 00760 Nicotinate and nicotinamide metabolism [PATH:rrr00760] D RRR_03305 inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D RRR_06820 NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D RRR_06825 NADP transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D RRR_00635 NAD synthetase K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D RRR_03335 succinate dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:rrr00770] D RRR_05755 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D RRR_04565 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D RRR_03190 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00780 Biotin metabolism [PATH:rrr00780] D RRR_06070 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RRR_06060 3-oxoacyl-ACP synthase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RRR_00040 3-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D RRR_02640 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D RRR_03655 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:rrr00785] D RRR_06960 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D RRR_05890 radical SAM protein K03644 lipA; lipoyl synthase [EC:2.8.1.8] D RRR_04080 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_06325 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_01905 pyruvate dehydrogenase E1 subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D RRR_01910 pyruvate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D RRR_03690 branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RRR_01270 MFS transporter K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D RRR_01260 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] C 00790 Folate biosynthesis [PATH:rrr00790] D RRR_02855 GTP cyclohydrolase K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D RRR_00245 folate biosynthesis protein K13941 folKP; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase / dihydropteroate synthase [EC:2.7.6.3 2.5.1.15] D RRR_00235 diadenosine tetraphosphatase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D RRR_03625 folylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D RRR_01255 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D RRR_04790 50S ribosomal protein L35 K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D RRR_05535 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D RRR_00625 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] C 00670 One carbon pool by folate [PATH:rrr00670] D RRR_00235 diadenosine tetraphosphatase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D RRR_03415 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D RRR_05895 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RRR_01520 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D RRR_02200 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D RRR_04075 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:rrr00860] D RRR_06685 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D RRR_04955 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RRR_02410 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RRR_04215 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D RRR_04035 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D RRR_07025 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D RRR_07005 coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D RRR_07015 membrane protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D RRR_07020 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D RRR_02515 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D RRR_01885 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rrr00130] D RRR_05460 ubiA; 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D RRR_06515 3-polyprenyl-4-hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D RRR_04230 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D RRR_04950 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D RRR_04425 2-octaprenyl-6-methoxyphenyl hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D RRR_05380 ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D RRR_01335 ubiquinone biosynthesis protein UbiB K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:rrr00900] D RRR_04230 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D RRR_03965 isopentenyl pyrophosphate isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D RRR_03855 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D RRR_03175 UDP pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis D RRR_02450 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:rrr00946] D RRR_05655 ATP-dependent protease K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:rrr00261] D RRR_05980 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RRR_02325 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RRR_03195 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RRR_01055 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:rrr00521] D RRR_01780 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D RRR_02450 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis C 00401 Novobiocin biosynthesis D RRR_00710 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis D RRR_05785 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RRR_06060 3-oxoacyl-ACP synthase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RRR_02640 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D RRR_06065 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D RRR_05655 ATP-dependent protease K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation D RRR_01435 2Fe-2S ferredoxin K04755 fdx; ferredoxin, 2Fe-2S C 00627 Aminobenzoate degradation D RRR_04230 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:rrr03020] D RRR_01010 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RRR_01015 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RRR_05085 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D RRR_04570 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:rrr03010] D RRR_00680 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D RRR_05175 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D RRR_02510 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D RRR_05120 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D RRR_00405 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D RRR_00960 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D RRR_05135 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D RRR_01735 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D RRR_05210 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D RRR_05090 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D RRR_00955 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D RRR_05095 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D RRR_05140 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D RRR_03530 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D RRR_06975 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D RRR_05160 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D RRR_00410 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D RRR_05185 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D RRR_05075 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D RRR_04880 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D RRR_00995 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D RRR_05190 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D RRR_05205 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D RRR_05200 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D RRR_05145 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D RRR_05130 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D RRR_01005 50S ribosomal protein L7 K02935 RP-L7; large subunit ribosomal protein L7/L12 D RRR_00415 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D RRR_01000 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D RRR_00990 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D RRR_01730 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D RRR_05155 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D RRR_05110 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D RRR_05170 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D RRR_05080 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D RRR_05125 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D RRR_00860 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D RRR_04800 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D RRR_05970 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D RRR_05180 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D RRR_05195 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D RRR_05150 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D RRR_04785 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D RRR_05975 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D RRR_00785 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D RRR_05165 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D RRR_05115 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D RRR_00790 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D RRR_06140 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D RRR_06980 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D RRR_04805 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D RRR_04795 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D RRR_04140 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D RRR_04855 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RRR_01530 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RRR_01535 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:rrr00970] D RRR_03975 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RRR_04545 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RRR_03860 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RRR_04370 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RRR_06670 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RRR_02015 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RRR_03395 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D RRR_02620 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D RRR_03865 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D RRR_03870 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D RRR_00150 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RRR_05225 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RRR_04605 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RRR_05550 tRNA-His K14226 tRNA-His; tRNA His D RRR_02835 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D RRR_05280 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RRR_04590 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RRR_06920 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RRR_02830 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RRR_06120 tRNA-Met K14230 tRNA-Met; tRNA Met D RRR_00795 tRNA-Met K14230 tRNA-Met; tRNA Met D RRR_01740 tRNA-Met K14230 tRNA-Met; tRNA Met D RRR_00090 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D RRR_06465 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D RRR_03765 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RRR_04155 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RRR_05805 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RRR_06970 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RRR_00660 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RRR_01125 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RRR_00970 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D RRR_05230 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D RRR_03995 tRNA-Val K14237 tRNA-Val; tRNA Val D RRR_05070 tRNA-Val K14237 tRNA-Val; tRNA Val D RRR_04955 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RRR_02410 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RRR_01075 glutamyl-tRNA(Gln) amidotransferase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D RRR_01070 gatB; glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D RRR_01080 glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D RRR_06790 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RRR_01040 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RRR_06755 glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D RRR_06750 glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D RRR_01620 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RRR_06205 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RRR_00675 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RRR_05445 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RRR_01520 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D RRR_05465 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RRR_03150 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RRR_04900 ileS; isoleucyl-tRNA synthase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RRR_02710 lysK; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D RRR_00585 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RRR_02860 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RRR_02240 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RRR_03120 phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RRR_03125 phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RRR_04340 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RRR_03770 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:rrr03060] D RRR_05105 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RRR_00980 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RRR_00665 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RRR_04620 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RRR_00870 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RRR_04615 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RRR_00475 insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D RRR_04555 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RRR_00615 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D RRR_01195 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RRR_06150 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor D RRR_05960 tatA; preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA D RRR_06200 preprotein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC D RRR_00880 signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89] D RRR_03005 peptidase A8 K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:rrr04122] D RRR_03900 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RRR_03905 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RRR_02225 thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] C 03050 Proteasome C 03018 RNA degradation [PATH:rrr03018] D RRR_01770 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D RRR_01880 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D RRR_03525 polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D RRR_05270 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RRR_03710 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D RRR_03310 Pmetallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D RRR_01305 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RRR_04970 molecular chaperone GroeL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RRR_00120 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:rrr03030] D RRR_05760 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RRR_06180 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RRR_06835 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RRR_01190 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RRR_01330 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RRR_06915 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D RRR_03130 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RRR_04240 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D RRR_06805 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D RRR_06650 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RRR_05740 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D RRR_01450 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D RRR_05700 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:rrr03410] D RRR_05910 endonuclease IV K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RRR_02570 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D RRR_05385 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D RRR_06720 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D RRR_01900 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RRR_05325 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RRR_03700 recombination protein RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RRR_05700 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:rrr03420] D RRR_04700 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D RRR_06645 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D RRR_01455 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D RRR_04490 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D RRR_03345 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RRR_05700 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:rrr03430] D RRR_02180 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D RRR_06985 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D RRR_03345 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RRR_05305 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D RRR_02545 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D RRR_03700 recombination protein RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RRR_06650 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RRR_06180 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RRR_03130 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RRR_06835 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RRR_01330 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RRR_01190 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RRR_05760 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RRR_06915 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D RRR_05700 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:rrr03440] D RRR_03700 recombination protein RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RRR_06650 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RRR_00225 recombinase RecF K03629 recF; DNA replication and repair protein RecF D RRR_04290 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D RRR_03275 recombinase RecR K06187 recR; recombination protein RecR D RRR_06055 recombinase RecA K03553 recA; recombination protein RecA D RRR_02875 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D RRR_02890 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D RRR_00895 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D RRR_04655 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D RRR_06180 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RRR_03130 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RRR_06835 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RRR_01330 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RRR_01190 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RRR_05760 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RRR_06915 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D RRR_04225 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:rrr02010] D RRR_00730 toluene ABC transporter substrate-binding protein K07323 mlaC; phospholipid transport system substrate-binding protein D RRR_05730 ABC transporter substrate-binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RRR_00750 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D RRR_00755 organic solvent ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D RRR_00115 hypothetical protein K09815 znuA; zinc transport system substrate-binding protein D RRR_06615 zinc ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D RRR_03620 biotin biosynthesis protein BioY K03523 bioY; biotin transport system substrate-specific component D RRR_00020 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein D RRR_00015 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D RRR_05575 multidrug ABC transporter substrate-binding protein K09808 lolC_E; lipoprotein-releasing system permease protein D RRR_05580 ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D RRR_06590 HEME exporter protein C (ccmC) K02195 ccmC; heme exporter protein C D RRR_01955 hypothetical protein K02194 ccmB; heme exporter protein B D RRR_06270 cytochrome C biogenesis protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D RRR_06910 hypothetical protein K07091 lptF; lipopolysaccharide export system permease protein D RRR_06115 permease K11720 lptG; lipopolysaccharide export system permease protein D RRR_03510 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D RRR_02895 multidrug resistance protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D RRR_02320 ABC transporter ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system [PATH:rrr03070] D RRR_01680 membrane protein K12340 tolC; outer membrane protein D RRR_04620 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RRR_00870 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RRR_00980 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RRR_00665 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RRR_05105 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RRR_04615 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RRR_00475 insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D RRR_04555 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RRR_06150 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor D RRR_00615 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D RRR_01195 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RRR_05960 tatA; preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA D RRR_06200 preprotein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC D RRR_00810 type VI secretion protein K03198 virB3; type IV secretion system protein VirB3 D RRR_02100 hypothetical protein K03204 virB9; type IV secretion system protein VirB9 D RRR_02120 VIRB9 protein precursor (virB9) K03204 virB9; type IV secretion system protein VirB9 D RRR_00835 hypothetical protein K03201 virB6; type IV secretion system protein VirB6 D RRR_00840 hypothetical protein K03201 virB6; type IV secretion system protein VirB6 D RRR_00820 hypothetical protein K03201 virB6; type IV secretion system protein VirB6 D RRR_00825 hypothetical protein K03201 virB6; type IV secretion system protein VirB6 D RRR_00830 hypothetical protein K03201 virB6; type IV secretion system protein VirB6 D RRR_02105 hypothetical protein K03203 virB8; type IV secretion system protein VirB8 D RRR_02115 hypothetical protein K03203 virB8; type IV secretion system protein VirB8 D RRR_02125 VIRB10 protein (virB10) K03195 virB10; type IV secretion system protein VirB10 D RRR_06215 transporter K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D RRR_00815 transporter K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D RRR_02130 type VI secretion protein K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] D RRR_02135 type IV secretion system protein VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] B B 09132 Signal transduction C 02020 Two-component system [PATH:rrr02020] D RRR_03180 ATPase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D RRR_03185 chemotaxis protein CheY K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D RRR_00925 serine peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D RRR_01885 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D RRR_04715 chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein D RRR_03565 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RRR_04870 histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D RRR_04435 ATPase AAA K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D RRR_01710 histidine kinase K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D RRR_00620 chemotaxis protein CheY K13584 ctrA; two-component system, cell cycle response regulator CtrA D RRR_01965 ubiquinol-cytochrome C reductase K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D RRR_01970 cytochrome B K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D RRR_01980 cytochrome C K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D RRR_01860 cysteine desulfurase K08738 CYC; cytochrome c D RRR_01580 cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D RRR_01585 cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D RRR_01680 membrane protein K12340 tolC; outer membrane protein D RRR_02460 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D RRR_01965 ubiquinol-cytochrome C reductase K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:rrr02024] D RRR_00475 insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D RRR_00980 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RRR_00665 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RRR_05105 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RRR_04615 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RRR_04555 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RRR_06150 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor D RRR_00615 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D RRR_01195 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis C 02040 Flagellar assembly D RRR_06800 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:rrr01501] D RRR_02900 transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D RRR_03825 transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D RRR_01680 membrane protein K12340 tolC; outer membrane protein D RRR_06360 peptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RRR_04450 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D RRR_04460 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:rrr01502] D RRR_01840 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RRR_00745 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RRR_04690 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D RRR_04685 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RRR_03030 UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rrr01503] D RRR_00925 serine peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D RRR_01680 membrane protein K12340 tolC; outer membrane protein D RRR_00035 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:rrr01000] C 01001 Protein kinases [BR:rrr01001] D RRR_03180 ATPase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D RRR_04870 histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D RRR_01710 histidine kinase K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:rrr01009] D RRR_06680 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG C 01002 Peptidases and inhibitors [BR:rrr01002] D RRR_03005 peptidase A8 K03101 lspA; signal peptidase II [EC:3.4.23.36] D RRR_02975 glutamine amidotransferase K07010 K07010; putative glutamine amidotransferase D RRR_01025 aminopeptidase A K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D RRR_06925 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D RRR_06550 methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D RRR_03875 aminopeptidase P K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D RRR_01275 peptidase M32 K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D RRR_00430 hflB; ATP-dependent metalloprotease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D RRR_01135 zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D RRR_00925 serine peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D RRR_02065 peptidase S9 K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D RRR_02905 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RRR_03980 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D RRR_03365 peptidase K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D RRR_00880 signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89] D RRR_01705 peptidase S41 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D RRR_03715 cytidylate kinase K04773 sppA; protease IV [EC:3.4.21.-] D RRR_02965 peptidase S66 K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D RRR_02340 peptidase K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D RRR_00920 membrane protein K04087 hflC; modulator of FtsH protease HflC D RRR_00915 membrane protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:rrr01003] D RRR_06360 peptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] C 01005 Lipopolysaccharide biosynthesis proteins [BR:rrr01005] D RRR_00035 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D RRR_02380 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D RRR_01870 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D RRR_00045 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D RRR_05750 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D RRR_05685 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D RRR_05680 lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D RRR_00700 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D RRR_00565 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D RRR_02825 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D RRR_03520 hypothetical protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rrr01011] D RRR_04575 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RRR_01835 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RRR_01830 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D RRR_03020 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RRR_04695 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RRR_01840 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RRR_00745 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RRR_02965 peptidase S66 K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D RRR_04685 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RRR_03030 UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D RRR_04640 multidrug transporter MurJ K03980 murJ; putative peptidoglycan lipid II flippase D RRR_06360 peptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RRR_04450 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D RRR_04460 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D RRR_02905 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RRR_02955 lytic transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D RRR_02390 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D RRR_02910 RlpA-like protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D RRR_06965 nucleoside transporter K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:rrr01004] D RRR_05785 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RRR_06135 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RRR_06070 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RRR_06060 3-oxoacyl-ACP synthase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RRR_00040 3-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D RRR_02640 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D RRR_00395 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D RRR_03775 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:rrr01006] D RRR_03855 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D RRR_03175 UDP pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D RRR_03490 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D RRR_05460 ubiA; 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D RRR_02515 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:rrr01007] D RRR_02710 lysK; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D RRR_04955 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RRR_02410 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RRR_04340 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RRR_03770 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RRR_00675 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RRR_00585 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RRR_05445 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RRR_04900 ileS; isoleucyl-tRNA synthase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RRR_05465 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RRR_03150 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RRR_01040 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RRR_02240 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RRR_06755 glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D RRR_06750 glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D RRR_06205 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RRR_02860 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RRR_01620 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RRR_06790 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RRR_03120 phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RRR_03125 phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RRR_00710 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RRR_06685 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D RRR_03190 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:rrr00194] D RRR_06300 atpC; F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D RRR_06305 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D RRR_06310 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D RRR_06315 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D RRR_06320 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D RRR_00180 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D RRR_00185 F0F1 ATP synthase subunit B' K02109 ATPF0B; F-type H+-transporting ATPase subunit b D RRR_00190 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D RRR_00200 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D RRR_00205 hypothetical protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:rrr03000] D RRR_03910 iron-sulfur binding protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D RRR_04330 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D RRR_03655 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D RRR_06245 XRE family transcriptional regulator K07726 K07726; putative transcriptional regulator D RRR_04610 antitoxin of toxin-antitoxin (TA) system K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB D RRR_01820 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D RRR_00550 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RRR_00215 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D RRR_00290 hypothetical protein K07735 algH; putative transcriptional regulator D RRR_06480 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor D RRR_04475 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:rrr03021] D RRR_05085 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D RRR_01010 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RRR_01015 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RRR_04570 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D RRR_06800 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D RRR_02210 RNA polymerase sigma 70 K03089 rpoH; RNA polymerase sigma-32 factor D RRR_04315 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D RRR_01140 transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB D RRR_00985 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D RRR_06480 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor D RRR_06815 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D RRR_03710 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:rrr03019] D RRR_01880 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D RRR_00885 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RRR_03310 Pmetallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D RRR_05270 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RRR_03525 polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D RRR_03710 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D RRR_01305 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RRR_04970 molecular chaperone GroeL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RRR_00120 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D RRR_01770 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] C 03041 Spliceosome C 03011 Ribosome [BR:rrr03011] D RRR_00680 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D RRR_05175 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D RRR_02510 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D RRR_05120 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D RRR_00405 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D RRR_00960 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D RRR_05135 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D RRR_01735 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D RRR_05210 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D RRR_05090 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D RRR_00955 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D RRR_05095 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D RRR_05140 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D RRR_03530 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D RRR_06975 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D RRR_05160 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D RRR_00410 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D RRR_05185 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D RRR_05075 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D RRR_04880 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D RRR_00995 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D RRR_05190 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D RRR_05205 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D RRR_05200 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D RRR_05145 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D RRR_05130 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D RRR_00415 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D RRR_01000 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D RRR_00990 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D RRR_01005 50S ribosomal protein L7 K02935 RP-L7; large subunit ribosomal protein L7/L12 D RRR_01730 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D RRR_05155 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D RRR_05110 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D RRR_05170 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D RRR_05080 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D RRR_05125 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D RRR_00860 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D RRR_04800 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D RRR_05970 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D RRR_05180 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D RRR_05195 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D RRR_05150 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D RRR_05975 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D RRR_00785 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D RRR_05165 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D RRR_05115 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D RRR_00790 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D RRR_06140 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D RRR_06980 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D RRR_04805 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D RRR_04795 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D RRR_04140 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D RRR_04785 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D RRR_01535 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D RRR_04855 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RRR_01530 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:rrr03009] D RRR_00885 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RRR_00890 era; GTPase Era K03595 era; GTPase D RRR_06705 GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] D RRR_06480 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor D RRR_04315 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D RRR_01140 transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB D RRR_00985 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D RRR_05290 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D RRR_04275 SAM-dependent methlyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D RRR_01170 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D RRR_00540 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D RRR_04470 16S rRNA methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D RRR_05950 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D RRR_04335 hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D RRR_05235 RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D RRR_01145 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D RRR_05695 competence protein ComJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D RRR_04265 RNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D RRR_01890 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D RRR_06725 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D RRR_02535 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D RRR_01880 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D RRR_02445 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D RRR_05270 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RRR_05335 GTP-binding protein Der K03977 engA; GTPase D RRR_06745 translation factor Sua5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D RRR_03260 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D RRR_04320 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP D RRR_06405 ribosome-associated protein IOJAP K09710 ybeB; ribosome-associated protein D RRR_05875 heat-shock protein K07042 ybeY; probable rRNA maturation factor D RRR_04765 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:rrr03016] D RRR_04955 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RRR_02410 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RRR_02860 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RRR_04900 ileS; isoleucyl-tRNA synthase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RRR_03150 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RRR_05445 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RRR_00585 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RRR_01040 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RRR_06790 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RRR_01620 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RRR_06205 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RRR_00675 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RRR_05465 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RRR_02240 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RRR_03120 phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RRR_03125 phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RRR_04340 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RRR_03770 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RRR_02330 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D RRR_06795 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D RRR_03535 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D RRR_03900 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RRR_03905 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RRR_06745 translation factor Sua5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D RRR_03490 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D RRR_06035 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D RRR_00535 tRNA uridine 5-carboxymethylaminomethyl modification protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D RRR_02175 3'-5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D RRR_04810 rnpA; ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D RRR_05015 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D RRR_04065 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D RRR_03160 3'-5' exonuclease K03684 rnd; ribonuclease D [EC:3.1.13.5] D RRR_00555 heme ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA D RRR_02710 lysK; lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D RRR_06755 glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D RRR_06750 glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D RRR_06595 deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D RRR_00095 tRNA-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D RRR_06365 (dimethylallyl)adenosine tRNA methylthiotransferase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D RRR_03115 2-methylthioadenine synthase K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D RRR_00900 RNA methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D RRR_00855 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D RRR_02225 thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D RRR_03890 hypothetical protein K13628 iscA; iron-sulfur cluster assembly protein D RRR_04055 aminomethyltransferase K06980 ygfZ; tRNA-modifying protein YgfZ D RRR_01550 S-adenosylmethionine tRNA ribosyltransferase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D RRR_05535 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D RRR_01255 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D RRR_04790 50S ribosomal protein L35 K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D RRR_00625 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D RRR_06770 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6] D RRR_05710 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D RRR_00425 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D RRR_04300 hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D RRR_00390 protein kinase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D RRR_00110 ATP-binding protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D RRR_03525 polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:rrr03012] D RRR_04310 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D RRR_03685 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D RRR_00685 elongation factor Ts K02357 tsf; elongation factor Ts D RRR_05220 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D RRR_00965 fusA; elongation factor G K02355 fusA; elongation factor G D RRR_03695 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D RRR_01090 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D RRR_06740 SAM-dependent methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D RRR_04780 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D RRR_06470 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D RRR_01775 elongation factor P K02356 efp; elongation factor P D RRR_02005 prfA; peptide chain release factor 1 K02836 prfB; peptide chain release factor 2 C 03110 Chaperones and folding catalysts [BR:rrr03110] D RRR_00380 ATPase AAA K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D RRR_05525 clpX; ATP-dependent protease K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D RRR_02345 ATP-dependent protease K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D RRR_06680 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D RRR_01305 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RRR_01440 hscA; molecular chaperone HscA K04044 hscA; molecular chaperone HscA D RRR_04970 molecular chaperone GroeL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RRR_01300 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D RRR_01445 hscB; CoA-transferase K04082 hscB; molecular chaperone HscB D RRR_05020 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE D RRR_04975 molecular chaperone GroES K04078 groES; chaperonin GroES D RRR_00925 serine peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D RRR_00430 hflB; ATP-dependent metalloprotease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D RRR_00200 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D RRR_00615 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D RRR_04495 hypothetical protein K09796 pccA; periplasmic copper chaperone A D RRR_00010 thioredoxin K03671 TXN; thioredoxin D RRR_01460 glutaredoxin K03676 grxC; glutaredoxin 3 D RRR_05905 glutaredoxin K07390 grxD; monothiol glutaredoxin C 04131 Membrane trafficking [BR:rrr04131] D RRR_00530 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RRR_06680 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system C 03051 Proteasome [BR:rrr03051] D RRR_06680 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:rrr03032] D RRR_05740 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D RRR_01185 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D RRR_05665 integration host factor K04764 ihfA; integration host factor subunit alpha D RRR_03720 DNA-binding protein K05788 ihfB; integration host factor subunit beta D RRR_04715 chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein D RRR_04240 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D RRR_06805 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D RRR_06650 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RRR_06180 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RRR_03130 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RRR_06915 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D RRR_01330 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RRR_01190 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RRR_05760 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RRR_06835 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RRR_01450 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D RRR_05700 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D RRR_01475 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RRR_04580 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RRR_00595 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D RRR_01700 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D RRR_02415 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:rrr03036] D RRR_00885 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RRR_01185 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D RRR_05665 integration host factor K04764 ihfA; integration host factor subunit alpha D RRR_03720 DNA-binding protein K05788 ihfB; integration host factor subunit beta D RRR_04715 chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein D RRR_06330 hypothetical protein K04047 dps; starvation-inducible DNA-binding protein D RRR_01850 cell division protein FtsA K03590 ftsA; cell division protein FtsA D RRR_04460 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D RRR_06545 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D RRR_04465 hypothetical protein K03586 ftsL; cell division protein FtsL D RRR_01845 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D RRR_03025 cell division protein FtsW K03588 ftsW; cell division protein FtsW D RRR_05250 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RRR_01545 ATPase K06916 zapE; cell division protein ZapE D RRR_06110 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D RRR_06105 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D RRR_02060 cell wall shape-determining protein K05837 rodA; rod shape determining protein RodA D RRR_01030 ATPase K03496 parA; chromosome partitioning protein D RRR_00545 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein D RRR_00550 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RRR_00595 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D RRR_01700 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D RRR_00535 tRNA uridine 5-carboxymethylaminomethyl modification protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D RRR_00540 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D RRR_06485 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D RRR_02625 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D RRR_00910 sodium:proton antiporter K03593 mrp; ATP-binding protein involved in chromosome partitioning D RRR_02865 cell filamentation protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D RRR_00800 GTP-binding protein YsxC K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:rrr03400] D RRR_04515 ADA regulatory protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RRR_02570 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D RRR_05910 endonuclease IV K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RRR_02950 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RRR_06720 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D RRR_05385 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D RRR_01900 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RRR_05325 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RRR_03700 recombination protein RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RRR_05700 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D RRR_06645 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D RRR_01455 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D RRR_04490 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D RRR_03345 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RRR_01010 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RRR_01015 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RRR_05085 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D RRR_04570 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D RRR_04700 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D RRR_02180 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D RRR_06985 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D RRR_05305 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D RRR_02545 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D RRR_06180 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RRR_03130 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RRR_06915 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D RRR_01330 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RRR_01190 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RRR_05760 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RRR_06835 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RRR_06650 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RRR_06055 recombinase RecA K03553 recA; recombination protein RecA D RRR_02875 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D RRR_02890 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D RRR_00895 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D RRR_04225 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RRR_04280 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D RRR_00225 recombinase RecF K03629 recF; DNA replication and repair protein RecF D RRR_04655 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D RRR_04290 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D RRR_03275 recombinase RecR K06187 recR; recombination protein RecR D RRR_01280 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D RRR_05770 ATPase AAA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D RRR_02970 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D RRR_01475 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RRR_04580 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RRR_02415 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D RRR_01185 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D RRR_05665 integration host factor K04764 ihfA; integration host factor subunit alpha D RRR_03720 DNA-binding protein K05788 ihfB; integration host factor subunit beta D RRR_03475 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RRR_03480 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:rrr03029] D RRR_01970 cytochrome B K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D RRR_04310 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D RRR_03685 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D RRR_00685 elongation factor Ts K02357 tsf; elongation factor Ts D RRR_05220 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D RRR_00965 fusA; elongation factor G K02355 fusA; elongation factor G D RRR_00890 era; GTPase Era K03595 era; GTPase D RRR_04340 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RRR_03150 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RRR_01040 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RRR_00585 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RRR_01075 glutamyl-tRNA(Gln) amidotransferase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D RRR_01070 gatB; glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D RRR_01080 glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D RRR_06650 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RRR_01130 membrane protein K07277 SAM50; outer membrane protein insertion porin family D RRR_01305 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RRR_05020 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE D RRR_04970 molecular chaperone GroeL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RRR_04975 molecular chaperone GroES K04078 groES; chaperonin GroES D RRR_01300 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D RRR_03900 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RRR_03905 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RRR_03895 FeS cluster assembly scaffold IscU K22068 ISCU; iron-sulfur cluster assembly enzyme ISCU, mitochondrial D RRR_01445 hscB; CoA-transferase K04082 hscB; molecular chaperone HscB D RRR_05905 glutaredoxin K07390 grxD; monothiol glutaredoxin D RRR_00455 succinate dehydrogenase iron-sulfur subunit K18164 NDUFAF7; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7 D RRR_00910 sodium:proton antiporter K03593 mrp; ATP-binding protein involved in chromosome partitioning D RRR_02515 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D RRR_02215 cysteine synthase K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D RRR_01885 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D RRR_00475 insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D RRR_05765 hypothetical protein K14998 SURF1; surfeit locus 1 family protein D RRR_00285 photosynthetic protein synthase II K07152 SCO1; protein SCO1 D RRR_04625 photosynthetic protein synthase II K07152 SCO1; protein SCO1 D RRR_06680 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:rrr02000] D RRR_02895 multidrug resistance protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D RRR_05555 ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D RRR_01570 multidrug ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D RRR_02320 ABC transporter ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D RRR_06075 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein D RRR_05730 ABC transporter substrate-binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RRR_00750 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D RRR_00755 organic solvent ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D RRR_00730 toluene ABC transporter substrate-binding protein K07323 mlaC; phospholipid transport system substrate-binding protein D RRR_02665 hypothetical protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D RRR_02670 hypothetical protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein D RRR_02675 methionine ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D RRR_01065 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RRR_00950 arginine ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D RRR_06885 ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D RRR_00115 hypothetical protein K09815 znuA; zinc transport system substrate-binding protein D RRR_06615 zinc ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D RRR_03620 biotin biosynthesis protein BioY K03523 bioY; biotin transport system substrate-specific component D RRR_00020 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein D RRR_00015 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D RRR_06910 hypothetical protein K07091 lptF; lipopolysaccharide export system permease protein D RRR_06115 permease K11720 lptG; lipopolysaccharide export system permease protein D RRR_03510 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D RRR_05575 multidrug ABC transporter substrate-binding protein K09808 lolC_E; lipoprotein-releasing system permease protein D RRR_05580 ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D RRR_06590 HEME exporter protein C (ccmC) K02195 ccmC; heme exporter protein C D RRR_01955 hypothetical protein K02194 ccmB; heme exporter protein B D RRR_06270 cytochrome C biogenesis protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D RRR_02750 major facilitator transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D RRR_07000 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D RRR_00525 MFS transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter D RRR_02900 transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D RRR_03825 transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D RRR_05570 MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D RRR_01105 MFS transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D RRR_03610 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D RRR_00470 mechanosensitive ion channel protein K16053 ybdG; miniconductance mechanosensitive channel D RRR_04595 magnesium transporter K06213 mgtE; magnesium transporter D RRR_02280 biopolymer transporter ExbB K03562 tolQ; biopolymer transport protein TolQ D RRR_02285 biopolymer transporter ExbD K03560 tolR; biopolymer transport protein TolR D RRR_04845 magnesium transporter K03284 corA; magnesium transporter D RRR_05595 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family D RRR_01680 membrane protein K12340 tolC; outer membrane protein D RRR_01130 membrane protein K07277 SAM50; outer membrane protein insertion porin family D RRR_01285 ComL family lipoprotein K05807 bamD; outer membrane protein assembly factor BamD D RRR_03515 hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC D RRR_05300 diguanylate cyclase K04744 lptD; LPS-assembly protein D RRR_05870 Hemolysin C K06189 corC; hemolysin (HlyC) family protein D RRR_06600 hypothetical protein K13283 fieF; ferrous-iron efflux pump FieF D RRR_00645 membrane protein K15270 sam; S-adenosylmethionine uptake transporter D RRR_06950 sodium:proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family D RRR_06400 potassium transporter K03455 KEA1_2_3; K+:H+ antiporter D RRR_01950 cation:proton antiporter K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D RRR_02095 cation:proton antiporter K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D RRR_02070 cation:proton antiporter K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D RRR_02085 cation:proton antiporter K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D RRR_02090 cation:proton antiporter K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D RRR_01100 cation:proton antiporter K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D RRR_01945 cation:proton antiporter K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D RRR_04640 multidrug transporter MurJ K03980 murJ; putative peptidoglycan lipid II flippase D RRR_02715 permease K13936 mdcF; malonate transporter and related proteins D RRR_03320 permease K24180 mleP; malate permease and related proteins D RRR_03815 LysE family translocator protein K06895 lysE; L-lysine exporter family protein LysE/ArgO D RRR_03025 cell division protein FtsW K03588 ftsW; cell division protein FtsW D RRR_02920 hypothetical protein K07243 FTR; high-affinity iron transporter D RRR_05330 hypothetical protein K15383 K15383; MtN3 and saliva related transmembrane protein D RRR_06125 peptidoglycan-binding protein K03640 pal; peptidoglycan-associated lipoprotein D RRR_02205 tolB; translocation protein TolB K03641 tolB; TolB protein D RRR_01800 hemolysin D K03543 emrA; membrane fusion protein, multidrug efflux system D RRR_02310 hemolysin secretion protein D K12537 hasE; membrane fusion protein, type I secretion system D RRR_05935 entericidin K16348 ecnB; entericidin B D RRR_05600 cytochrome C biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF C 02044 Secretion system [BR:rrr02044] D RRR_01680 membrane protein K12340 tolC; outer membrane protein D RRR_02320 ABC transporter ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D RRR_02310 hemolysin secretion protein D K12537 hasE; membrane fusion protein, type I secretion system D RRR_00810 type VI secretion protein K03198 virB3; type IV secretion system protein VirB3 D RRR_06215 transporter K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D RRR_00815 transporter K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D RRR_00835 hypothetical protein K03201 virB6; type IV secretion system protein VirB6 D RRR_00840 hypothetical protein K03201 virB6; type IV secretion system protein VirB6 D RRR_00820 hypothetical protein K03201 virB6; type IV secretion system protein VirB6 D RRR_00825 hypothetical protein K03201 virB6; type IV secretion system protein VirB6 D RRR_00830 hypothetical protein K03201 virB6; type IV secretion system protein VirB6 D RRR_02105 hypothetical protein K03203 virB8; type IV secretion system protein VirB8 D RRR_02115 hypothetical protein K03203 virB8; type IV secretion system protein VirB8 D RRR_02100 hypothetical protein K03204 virB9; type IV secretion system protein VirB9 D RRR_02120 VIRB9 protein precursor (virB9) K03204 virB9; type IV secretion system protein VirB9 D RRR_02125 VIRB10 protein (virB10) K03195 virB10; type IV secretion system protein VirB10 D RRR_02130 type VI secretion protein K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] D RRR_02135 type IV secretion system protein VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D RRR_04555 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RRR_00615 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D RRR_04620 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RRR_00980 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RRR_00870 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RRR_00665 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RRR_05105 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RRR_01195 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RRR_06150 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor D RRR_04615 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RRR_00475 insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D RRR_05960 tatA; preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA D RRR_06200 preprotein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:rrr02042] D RRR_05595 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family C 02022 Two-component system [BR:rrr02022] D RRR_03180 ATPase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D RRR_03185 chemotaxis protein CheY K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D RRR_04870 histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D RRR_04435 ATPase AAA K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D RRR_01710 histidine kinase K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D RRR_00620 chemotaxis protein CheY K13584 ctrA; two-component system, cell cycle response regulator CtrA C 02035 Bacterial motility proteins C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:rrr04812] D RRR_06110 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D RRR_05250 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RRR_01850 cell division protein FtsA K03590 ftsA; cell division protein FtsA D RRR_01030 ATPase K03496 parA; chromosome partitioning protein D RRR_00545 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein D RRR_00550 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:rrr04147] D RRR_06680 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D RRR_02425 peroxidase K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D RRR_04970 molecular chaperone GroeL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RRR_01305 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RRR_05220 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D RRR_02330 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D RRR_05100 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D RRR_03565 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RRR_04215 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D RRR_04080 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRR_06325 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] C 02048 Prokaryotic defense system [BR:rrr02048] D RRR_00030 growth inhibitor PemK K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D RRR_04610 antitoxin of toxin-antitoxin (TA) system K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB D RRR_06880 antitoxin K18923 stbD; antitoxin StbD D RRR_06905 2-hydroxyacid dehydrogenase K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-] D RRR_06900 XRE family transcriptional regulator K07473 dinJ; DNA-damage-inducible protein J D RRR_01595 toxin of toxin-antitoxin (TA) system K19158 yoeB; toxin YoeB [EC:3.1.-.-] D RRR_01590 antitoxin K19159 yefM; antitoxin YefM D RRR_00715 antitoxin K19159 yefM; antitoxin YefM D RRR_06765 antitoxin K19165 phd; antitoxin Phd D RRR_02030 pirin K21498 higA-1; antitoxin HigA-1 D RRR_06760 toxin K07062 fitB; toxin FitB [EC:3.1.-.-] D RRR_05250 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RRR_06110 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D RRR_00595 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D RRR_01700 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D RRR_04955 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RRR_02410 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RRR_04705 hypothetical protein K09159 cptB; antitoxin CptB D RRR_03900 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RRR_03905 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:rrr01504] D RRR_02985 acetyltransferase K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-] D RRR_04185 hypothetical protein K18554 cpt; chloramphenicol 3-O phosphotransferase [EC:2.7.1.-] D RRR_01680 membrane protein K12340 tolC; outer membrane protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:rrr03100] D RRR_03975 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RRR_04545 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D RRR_03860 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RRR_04370 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RRR_06670 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D RRR_02015 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D RRR_03395 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D RRR_02620 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D RRR_03865 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D RRR_03870 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D RRR_00150 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D RRR_05225 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RRR_04605 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D RRR_05550 tRNA-His K14226 tRNA-His; tRNA His D RRR_02835 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D RRR_05280 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RRR_04590 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RRR_06920 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D RRR_02830 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D RRR_06120 tRNA-Met K14230 tRNA-Met; tRNA Met D RRR_00795 tRNA-Met K14230 tRNA-Met; tRNA Met D RRR_01740 tRNA-Met K14230 tRNA-Met; tRNA Met D RRR_00090 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D RRR_06465 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D RRR_03765 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RRR_04155 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RRR_05805 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D RRR_06970 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RRR_00660 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RRR_01125 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D RRR_00970 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D RRR_05230 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D RRR_03995 tRNA-Val K14237 tRNA-Val; tRNA Val D RRR_05070 tRNA-Val K14237 tRNA-Val; tRNA Val D RRR_04855 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D RRR_01530 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D RRR_01535 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D RRR_05675 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D RRR_02645 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D RRR_00460 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D RRR_00005 PEP synthetase regulatory protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D RRR_05440 DNA-binding protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D RRR_02655 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RRR_00515 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D RRR_03575 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D RRR_01515 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D RRR_06585 ferredoxin K05524 fdxA; ferredoxin C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism C 99987 Cofactor metabolism D RRR_05375 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D RRR_04885 isoleucyl-tRNA synthetase K18587 COQ9; ubiquinone biosynthesis protein COQ9 D RRR_01160 ribosome association toxin RatA K18588 COQ10; coenzyme Q-binding protein COQ10 C 99988 Secondary metabolism C 99999 Others D RRR_05900 hydrolase K06999 K06999; phospholipase/carboxylesterase B B 09192 Unclassified: genetic information processing C 99973 Transcription D RRR_05275 cold-shock protein K03704 cspA; cold shock protein C 99974 Translation C 99975 Protein processing D RRR_06700 trigger factor K03545 tig; trigger factor D RRR_03200 single-stranded DNA-binding protein K03664 smpB; SsrA-binding protein D RRR_02360 chemotaxis protein CheB K07391 comM; magnesium chelatase family protein C 99976 Replication and repair D RRR_06560 DNA repair protein RadC K03630 radC; DNA repair protein RadC D RRR_05485 DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC C 99979 Viral proteins C 99998 Others D RRR_06840 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D RRR_03880 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D RRR_02235 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D RRR_01180 hydrogenase expression protein HypA K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D RRR_05855 ADP,ATP carrier protein 5 K03301 TC.AAA; ATP:ADP antiporter, AAA family D RRR_00520 ATPase AAA K03301 TC.AAA; ATP:ADP antiporter, AAA family D RRR_03540 ADP,ATP carrier protein 4 K03301 TC.AAA; ATP:ADP antiporter, AAA family C 99978 Cell growth D RRR_02915 septation protein A K06190 ispZ; intracellular septation protein C 99993 Cell motility C 99995 Signaling proteins D RRR_01915 GTP-binding protein TypA K06207 typA; GTP-binding protein C 99992 Structural proteins D RRR_00725 hypothetical protein K04754 mlaA; phospholipid-binding lipoprotein MlaA D RRR_00640 membrane protein K07275 ompW; outer membrane protein D RRR_04630 cytochrome C biogenesis protein CcmB K02197 ccmE; cytochrome c-type biogenesis protein CcmE C 99994 Others D RRR_01250 cation tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein D RRR_02395 cyaY; frataxin K06202 cyaY; iron-sulfur cluster assembly protein CyaY B B 09194 Poorly characterized C 99996 General function prediction only D RRR_03645 hypothetical protein K07001 K07001; NTE family protein D RRR_00575 hypothetical protein K15724 erpA; iron-sulfur cluster insertion protein D RRR_03560 ribonuclease BN K07058 K07058; membrane protein D RRR_00930 hypothetical protein K07146 K07146; UPF0176 protein C 99997 Function unknown D RRR_01230 ankyrin K06867 K06867; uncharacterized protein D RRR_01555 ankyrin K06867 K06867; uncharacterized protein D RRR_02685 ankyrin K06867 K06867; uncharacterized protein D RRR_01695 ankyrin K06867 K06867; uncharacterized protein D RRR_02490 hydrolase K06889 K06889; uncharacterized protein D RRR_01050 membrane protein K06890 K06890; uncharacterized protein D RRR_03795 alpha/beta hydrolase K07018 K07018; uncharacterized protein D RRR_01425 C4-dicarboxylate ABC transporter substrate-binding protein K07080 K07080; uncharacterized protein D RRR_06090 hypothetical protein K07133 K07133; uncharacterized protein D RRR_02580 membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein D RRR_06675 hypothetical protein K09131 K09131; uncharacterized protein D RRR_01175 hypothetical protein K09779 K09779; uncharacterized protein D RRR_03740 hypothetical protein K09861 K09861; uncharacterized protein D RRR_05745 aminotransferase K09985 K09985; uncharacterized protein D RRR_00630 hypothetical protein K09987 K09987; uncharacterized protein D RRR_01685 hypothetical protein K09991 K09991; uncharacterized protein D RRR_00905 hypothetical protein K07276 K07276; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 22, 2024