+D GENES KO
#
KEGG Orthology (KO) - Rathayibacter rathayi
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:rry00010]
D C1O28_04800 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D C1O28_05615 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D C1O28_00690 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D C1O28_10555 glpX; fructose-bisphosphatase class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D C1O28_08605 glpX; fructose-bisphosphatase class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D C1O28_08610 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D C1O28_05585 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D C1O28_05575 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D C1O28_05580 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D C1O28_02515 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D C1O28_03265 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D C1O28_05445 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D C1O28_07085 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D C1O28_06125 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D C1O28_06120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_12900 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_02345 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D C1O28_09775 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_12925 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_13950 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_02370 aldose epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D C1O28_01305 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D C1O28_06200 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D C1O28_03135 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
C 00020 Citrate cycle (TCA cycle) [PATH:rry00020]
D C1O28_08425 citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D C1O28_06035 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D C1O28_02300 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D C1O28_06120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_12900 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_02095 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D C1O28_02090 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D C1O28_09375 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D C1O28_09380 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D C1O28_09365 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D C1O28_09370 succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D C1O28_08655 aspA; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D C1O28_11565 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D C1O28_09845 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D C1O28_03135 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D C1O28_07085 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D C1O28_06125 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:rry00030]
D C1O28_05615 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D C1O28_05610 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D C1O28_04750 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D C1O28_13740 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D C1O28_03700 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D C1O28_05600 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D C1O28_09425 NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D C1O28_13555 gnd; 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D C1O28_05380 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D C1O28_05625 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D C1O28_05620 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D C1O28_06420 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D C1O28_02745 phosphoketolase family protein K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D C1O28_00160 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D C1O28_01290 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D C1O28_01305 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D C1O28_09435 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D C1O28_09415 hypothetical protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D C1O28_14425 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D C1O28_04680 gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D C1O28_08610 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D C1O28_10555 glpX; fructose-bisphosphatase class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D C1O28_08605 glpX; fructose-bisphosphatase class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D C1O28_00690 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:rry00040]
D C1O28_09805 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D C1O28_02960 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D C1O28_11665 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D C1O28_05380 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D C1O28_11670 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D C1O28_09955 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D C1O28_09950 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D C1O28_12095 FAD-binding protein K00594 xyoA; alditol oxidase [EC:1.1.3.41]
C 00051 Fructose and mannose metabolism [PATH:rry00051]
D C1O28_12150 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D C1O28_02870 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D C1O28_09095 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D C1O28_09300 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D C1O28_09355 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D C1O28_09120 GDP-mannose 4,6 dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D C1O28_09125 GDP-mannose 4,6 dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D C1O28_11135 aldo/keto reductase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D C1O28_00690 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D C1O28_10555 glpX; fructose-bisphosphatase class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D C1O28_08605 glpX; fructose-bisphosphatase class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D C1O28_01720 mannitol-1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]
D C1O28_03215 1-phosphofructokinase family hexose kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D C1O28_12095 FAD-binding protein K00594 xyoA; alditol oxidase [EC:1.1.3.41]
D C1O28_09950 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D C1O28_08610 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D C1O28_05585 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D C1O28_13175 glycoside hydrolase family 32 protein K03332 fruA; fructan beta-fructosidase [EC:3.2.1.80]
D C1O28_06420 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D C1O28_03210 PTS fructose transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D C1O28_03200 PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D C1O28_01715 PTS mannitol transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D C1O28_01710 PTS mannitol transporter subunit IICBA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D C1O28_00740 2-deoxyglucose-6-phosphatase K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
C 00052 Galactose metabolism [PATH:rry00052]
D C1O28_02370 aldose epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D C1O28_02355 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D C1O28_02360 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D C1O28_09090 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D C1O28_12700 epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D C1O28_02960 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D C1O28_01305 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D C1O28_04800 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D C1O28_14095 beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D C1O28_11695 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D C1O28_11705 glycoside hydrolase family 27 protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D C1O28_00690 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D C1O28_13150 hypothetical protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D C1O28_10620 DUF3459 domain-containing protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D C1O28_04100 alpha-glucosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
C 00053 Ascorbate and aldarate metabolism [PATH:rry00053]
D C1O28_09805 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D C1O28_14425 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D C1O28_11135 aldo/keto reductase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D C1O28_09310 PTS ascorbate transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D C1O28_09305 PTS ascorbate transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D C1O28_11665 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
C 00500 Starch and sucrose metabolism [PATH:rry00500]
D C1O28_13150 hypothetical protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D C1O28_10620 DUF3459 domain-containing protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D C1O28_03100 glycoside hydrolase 68 family protein K00692 sacB; levansucrase [EC:2.4.1.10]
D C1O28_03535 amylosucrase K05341 E2.4.1.4; amylosucrase [EC:2.4.1.4]
D C1O28_02960 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D C1O28_01220 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D C1O28_01695 hypothetical protein K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D C1O28_05705 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D C1O28_10205 hypothetical protein K16150 K16150; glycogen synthase [EC:2.4.1.11]
D C1O28_06660 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D C1O28_06650 glycosyltransferase family 1 protein K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D C1O28_06640 glgX; glycogen debranching enzyme GlgX K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196]
D C1O28_05735 treS; maltose alpha-D-glucosyltransferase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1]
D C1O28_00390 DUF3459 domain-containing protein K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135]
D C1O28_04100 alpha-glucosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D C1O28_07840 phosphotransferase K16146 pep2; maltokinase [EC:2.7.1.175]
D C1O28_06655 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16]
D C1O28_05710 glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D C1O28_05780 glgX; glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D C1O28_00245 glgX; glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D C1O28_05785 treY; malto-oligosyltrehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15]
D C1O28_05790 treZ; malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141]
D C1O28_03720 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D C1O28_03725 otsB; trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D C1O28_12520 glycoside hydrolase family 65 protein K05342 treP; alpha,alpha-trehalose phosphorylase [EC:2.4.1.64]
D C1O28_01305 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D C1O28_04800 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D C1O28_05615 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D C1O28_12150 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D C1O28_02870 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rry00520]
D C1O28_12150 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D C1O28_02870 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D C1O28_01855 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D C1O28_01845 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D C1O28_09440 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D C1O28_07765 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D C1O28_10505 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D C1O28_12555 N-acetylneuraminate synthase K05304 NANS; sialic acid synthase [EC:2.5.1.56 2.5.1.57 2.5.1.132]
D C1O28_11700 alpha-N-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D C1O28_14805 alpha-L-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D C1O28_04800 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D C1O28_06200 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D C1O28_01305 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D C1O28_02960 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D C1O28_09805 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D C1O28_02355 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D C1O28_02360 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D C1O28_09090 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D C1O28_12700 epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D C1O28_05615 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D C1O28_09095 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D C1O28_09300 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D C1O28_09355 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D C1O28_09120 GDP-mannose 4,6 dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D C1O28_09125 GDP-mannose 4,6 dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D C1O28_05705 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:rry00620]
D C1O28_09775 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_12925 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_13950 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_07085 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D C1O28_06125 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D C1O28_06120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_12900 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_02345 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D C1O28_09880 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D C1O28_09885 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D C1O28_05445 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D C1O28_09285 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D C1O28_00185 pyruvate dehydrogenase K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D C1O28_11565 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D C1O28_09845 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D C1O28_08655 aspA; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D C1O28_04745 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D C1O28_03135 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D C1O28_03035 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D C1O28_07280 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D C1O28_01955 pyruvate carboxyltransferase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rry00630]
D C1O28_09775 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_12925 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_13950 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_11565 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D C1O28_08425 citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D C1O28_06035 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D C1O28_03035 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D C1O28_09285 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D C1O28_09245 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D C1O28_05025 FAD-binding protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D C1O28_12490 catalase K03781 katE; catalase [EC:1.11.1.6]
D C1O28_13285 haloacid dehalogenase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D C1O28_06145 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C1O28_06185 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C1O28_02335 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D C1O28_08500 gcvP; glycine dehydrogenase (aminomethyl-transferring) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D C1O28_08510 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D C1O28_06120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_12900 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_08505 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D C1O28_10175 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D C1O28_09415 hypothetical protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D C1O28_02325 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:rry00640]
D C1O28_09775 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_12925 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_13950 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_09880 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D C1O28_09885 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D C1O28_14780 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D C1O28_14785 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D C1O28_14790 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D C1O28_06120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_12900 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_11570 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D C1O28_00650 oxidoreductase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D C1O28_09285 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D C1O28_08060 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D C1O28_08075 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D C1O28_09245 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D C1O28_02090 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D C1O28_02095 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D C1O28_01025 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D C1O28_00060 MmgE/PrpD family protein K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D C1O28_06440 prpB; methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
C 00650 Butanoate metabolism [PATH:rry00650]
D C1O28_03035 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D C1O28_09375 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D C1O28_09380 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D C1O28_09365 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D C1O28_09370 succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D C1O28_08060 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D C1O28_08075 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D C1O28_09695 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D C1O28_00205 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D C1O28_14315 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D C1O28_03750 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D C1O28_03755 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D C1O28_06220 hypothetical protein K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
C 00660 C5-Branched dibasic acid metabolism [PATH:rry00660]
D C1O28_03750 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D C1O28_03755 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D C1O28_06220 hypothetical protein K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D C1O28_02090 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D C1O28_02095 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D C1O28_07775 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D C1O28_01935 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D C1O28_07770 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D C1O28_01930 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D C1O28_03830 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:rry00562]
D C1O28_10630 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D C1O28_14550 myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D C1O28_01025 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D C1O28_05585 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:rry00190]
D C1O28_03280 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D C1O28_09375 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D C1O28_09380 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D C1O28_09365 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D C1O28_09370 succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D C1O28_04985 Rieske (2Fe-2S) protein K03890 qcrA; quinol---cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D C1O28_04980 ubiquinol-cytochrome c reductase cytochrome b subunit K03891 qcrB; quinol---cytochrome-c reductase cytochrome b subunit [EC:7.1.1.8]
D C1O28_04990 cystathionine beta-lyase K03889 qcrC; quinol---cytochrome-c reductase cytochrome c subunit [EC:7.1.1.8]
D C1O28_05630 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D C1O28_04975 cytochrome c oxidase subunit 4 K27109 ctaF; cytochrome c oxidase subunit IV [EC:7.1.1.9]
D C1O28_04995 heme-copper oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D C1O28_04970 ctaD; cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D C1O28_04965 coxB; cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D C1O28_05635 cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D C1O28_07450 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D C1O28_07445 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D C1O28_08145 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D C1O28_08135 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D C1O28_08140 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D C1O28_08150 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D C1O28_08130 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D C1O28_08165 atpB; ATP synthase F0 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D C1O28_08155 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D C1O28_08160 atpE; ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D C1O28_11480 inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D C1O28_02475 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:rry00710]
D C1O28_05580 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D C1O28_05575 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D C1O28_08610 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D C1O28_10555 glpX; fructose-bisphosphatase class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D C1O28_08605 glpX; fructose-bisphosphatase class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D C1O28_05625 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D C1O28_06420 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D C1O28_05585 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D C1O28_05380 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D C1O28_05620 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D C1O28_04745 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D C1O28_11565 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:rry00720]
D C1O28_04745 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D C1O28_11565 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D C1O28_08655 aspA; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D C1O28_09375 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D C1O28_09380 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D C1O28_09365 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D C1O28_09370 succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D C1O28_02095 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D C1O28_02090 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D C1O28_03035 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D C1O28_02300 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D C1O28_06035 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D C1O28_02340 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D C1O28_09925 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D C1O28_04230 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D C1O28_09885 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D C1O28_09880 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D C1O28_09775 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_12925 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_13950 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:rry00680]
D C1O28_02335 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D C1O28_03265 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D C1O28_04745 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D C1O28_11565 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D C1O28_08610 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D C1O28_10555 glpX; fructose-bisphosphatase class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D C1O28_08605 glpX; fructose-bisphosphatase class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D C1O28_00690 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D C1O28_02305 LLM class flavin-dependent oxidoreductase K00320 mer; 5,10-methylenetetrahydromethanopterin reductase [EC:1.5.98.2]
D C1O28_09880 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D C1O28_09885 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D C1O28_09775 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_12925 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_13950 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_02515 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D C1O28_03780 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D C1O28_02720 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D C1O28_05700 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D C1O28_02855 cofG; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG K11779 fbiC; FO synthase [EC:2.5.1.147 4.3.1.32]
D C1O28_07695 cofC; 2-phospho-L-lactate guanylyltransferase K14941 cofC; 2-phospho-L-lactate/phosphoenolpyruvate guanylyltransferase [EC:2.7.7.68 2.7.7.105]
D C1O28_07045 2-phospho-L-lactate transferase K11212 cofD; LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28]
D C1O28_07700 cofE; coenzyme F420-0:L-glutamate ligase K12234 cofE; coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34]
C 00910 Nitrogen metabolism [PATH:rry00910]
D C1O28_06145 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C1O28_06185 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C1O28_05435 glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D C1O28_05440 gltD; glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D C1O28_08650 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:rry00920]
D C1O28_12915 aliphatic sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D C1O28_12920 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D C1O28_12910 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D C1O28_01085 NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D C1O28_14325 pyridine nucleotide-disulfide oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D C1O28_05995 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D C1O28_09535 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D C1O28_04610 hypothetical protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D C1O28_10875 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D C1O28_10880 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D C1O28_10215 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:rry00061]
D C1O28_09285 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D C1O28_07105 acyl carrier protein K02078 acpP; acyl carrier protein
D C1O28_07095 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D C1O28_07100 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D C1O28_07110 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D C1O28_07855 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D C1O28_06590 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_04795 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_02075 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_03045 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:rry00071]
D C1O28_03035 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D C1O28_11570 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D C1O28_09100 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D C1O28_06590 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_04795 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_02075 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_03045 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:rry00561]
D C1O28_10175 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D C1O28_02345 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D C1O28_05005 dihydroxyacetone kinase subunit DhaK K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D C1O28_05010 dhaL; dihydroxyacetone kinase subunit L K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D C1O28_05015 hypothetical protein K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D C1O28_03165 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D C1O28_12455 haloacid dehalogenase K06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21]
D C1O28_08065 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D C1O28_04805 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D C1O28_00280 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D C1O28_11460 hypothetical protein K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D C1O28_01490 hypothetical protein K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
D C1O28_11695 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D C1O28_11705 glycoside hydrolase family 27 protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:rry00564]
D C1O28_07755 NAD(P)-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D C1O28_03155 glycerol-3-phosphate dehydrogenase/oxidase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D C1O28_08065 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D C1O28_04805 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D C1O28_00280 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D C1O28_11460 hypothetical protein K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D C1O28_05920 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D C1O28_02055 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D C1O28_06705 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D C1O28_04175 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D C1O28_11375 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D C1O28_04755 CDP-alcohol phosphatidyltransferase family protein K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:rry00600]
D C1O28_11695 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D C1O28_11705 glycoside hydrolase family 27 protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:rry00592]
D C1O28_11570 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:rry01040]
D C1O28_11570 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D C1O28_06460 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:rry00230]
D C1O28_01305 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D C1O28_09435 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D C1O28_12260 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D C1O28_12290 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D C1O28_02265 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D C1O28_12585 phosphoribosylformylglycinamidine synthase subunit PurL K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D C1O28_12510 phosphoribosylformylglycinamidine synthase subunit PurS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D C1O28_12515 phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D C1O28_12250 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D C1O28_09230 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D C1O28_09225 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D C1O28_14755 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D C1O28_02270 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D C1O28_03260 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D C1O28_12280 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D C1O28_09600 glutamate--cysteine ligase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D C1O28_12810 TIGR01457 family HAD-type hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D C1O28_09295 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D C1O28_11470 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D C1O28_02000 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D C1O28_02005 GuaB3 family IMP dehydrogenase-related protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D C1O28_06295 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D C1O28_03615 rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D C1O28_10820 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D C1O28_02035 glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D C1O28_08900 GuaB1 family IMP dehydrogenase-related protein K26110 guaB1; GMP reductase [EC:1.7.1.7]
D C1O28_06930 guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D C1O28_05345 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D C1O28_10160 class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D C1O28_10155 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D C1O28_10945 HD domain-containing protein K01129 dgt; dGTPase [EC:3.1.5.1]
D C1O28_07240 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D C1O28_05185 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D C1O28_11525 GTP pyrophosphokinase family protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D C1O28_12770 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D C1O28_09315 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D C1O28_10030 adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2]
D C1O28_05480 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D C1O28_01680 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D C1O28_06745 phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D C1O28_07820 phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D C1O28_05120 HIT domain-containing protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D C1O28_06925 pucL; urate oxidase K00365 uaZ; urate oxidase [EC:1.7.3.3]
D C1O28_06940 uraH; hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D C1O28_06945 uraD; OHCU decarboxylase K16840 hpxQ; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97]
D C1O28_10540 hypothetical protein K16841 hpxA; allantoin racemase [EC:5.1.99.3]
D C1O28_06920 allB; allantoinase AllB K01466 allB; allantoinase [EC:3.5.2.5]
D C1O28_06965 allantoate amidohydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D C1O28_06970 alanine--glyoxylate aminotransferase family protein K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
C 00240 Pyrimidine metabolism [PATH:rry00240]
D C1O28_05335 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D C1O28_05330 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D C1O28_05320 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D C1O28_05325 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D C1O28_04945 quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D C1O28_12825 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D C1O28_05340 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D C1O28_06715 UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D C1O28_06295 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D C1O28_09280 septum formation inhibitor Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D C1O28_04415 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D C1O28_04455 cmk; (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D C1O28_12280 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D C1O28_09600 glutamate--cysteine ligase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D C1O28_12810 TIGR01457 family HAD-type hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D C1O28_10830 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D C1O28_05315 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D C1O28_09325 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D C1O28_00455 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D C1O28_10160 class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D C1O28_10155 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D C1O28_09730 dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D C1O28_06050 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D C1O28_09320 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D C1O28_09830 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D C1O28_00520 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D C1O28_04150 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D C1O28_07035 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D C1O28_07040 acyltransferase K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:rry00250]
D C1O28_01950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D C1O28_10490 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D C1O28_08525 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D C1O28_04685 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D C1O28_04005 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D C1O28_04605 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D C1O28_04355 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D C1O28_12770 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D C1O28_14755 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D C1O28_05320 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D C1O28_08060 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D C1O28_08075 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D C1O28_09695 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D C1O28_00205 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D C1O28_05435 glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D C1O28_05440 gltD; glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D C1O28_00090 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D C1O28_06145 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C1O28_06185 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C1O28_05335 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D C1O28_05330 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D C1O28_12515 phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D C1O28_01855 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D C1O28_12260 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:rry00260]
D C1O28_09855 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D C1O28_09850 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D C1O28_08300 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D C1O28_01730 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D C1O28_08290 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D C1O28_08295 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D C1O28_12880 threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D C1O28_02335 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D C1O28_10175 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D C1O28_02515 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D C1O28_03780 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D C1O28_02720 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D C1O28_05700 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D C1O28_08500 gcvP; glycine dehydrogenase (aminomethyl-transferring) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D C1O28_08510 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D C1O28_06120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_12900 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_08505 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D C1O28_10220 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D C1O28_09525 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D C1O28_08720 threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D C1O28_05425 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D C1O28_05420 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:rry00270]
D C1O28_10875 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D C1O28_10880 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D C1O28_10220 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D C1O28_07905 homocysteine S-methyltransferase K00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10]
D C1O28_04235 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D C1O28_05360 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D C1O28_13325 mtnN; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D C1O28_14590 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D C1O28_02415 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D C1O28_13330 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D C1O28_09855 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D C1O28_09850 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D C1O28_08300 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D C1O28_01730 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D C1O28_10215 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D C1O28_08800 bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D C1O28_09500 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D C1O28_03835 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D C1O28_01950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D C1O28_10490 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D C1O28_05995 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D C1O28_09535 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D C1O28_04610 hypothetical protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D C1O28_11565 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D C1O28_09525 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D C1O28_03780 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D C1O28_02720 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:rry00280]
D C1O28_03835 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D C1O28_14780 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D C1O28_14785 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D C1O28_14790 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D C1O28_06120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_12900 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_09285 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D C1O28_09245 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D C1O28_00120 NAD(P)-dependent oxidoreductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D C1O28_01025 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D C1O28_08060 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D C1O28_08075 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D C1O28_14315 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D C1O28_03035 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rry00290]
D C1O28_08720 threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D C1O28_07775 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D C1O28_01935 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D C1O28_07770 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D C1O28_01930 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D C1O28_03830 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D C1O28_03750 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D C1O28_03755 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D C1O28_03760 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D C1O28_03745 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D C1O28_03835 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D C1O28_07280 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D C1O28_01955 pyruvate carboxyltransferase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:rry00300]
D C1O28_08300 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D C1O28_01730 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D C1O28_09855 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D C1O28_09850 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D C1O28_05950 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D C1O28_12570 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D C1O28_04160 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D C1O28_04125 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D C1O28_08420 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D C1O28_04345 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D C1O28_03505 aminotransferase class V-fold PLP-dependent enzyme K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D C1O28_08415 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D C1O28_04215 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D C1O28_08305 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D C1O28_13615 PLP-dependent aminotransferase family protein K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D C1O28_04855 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D C1O28_01230 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D C1O28_04860 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:rry00310]
D C1O28_06120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_12900 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_09100 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D C1O28_03035 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D C1O28_08060 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D C1O28_08075 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D C1O28_09695 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D C1O28_00205 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00220 Arginine biosynthesis [PATH:rry00220]
D C1O28_04350 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D C1O28_04605 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D C1O28_04355 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D C1O28_12145 N-dimethylarginine dimethylaminohydrolase K27545 argZ; arginine dihydrolase [EC:3.5.3.27]
D C1O28_12515 phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D C1O28_06145 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C1O28_06185 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C1O28_05335 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D C1O28_05330 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D C1O28_01950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D C1O28_10490 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D C1O28_11340 amino-acid N-acetyltransferase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1]
D C1O28_04335 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D C1O28_12890 GNAT family N-acetyltransferase K22476 K22476; N-acetylglutamate synthase [EC:2.3.1.1]
D C1O28_04340 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D C1O28_04330 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D C1O28_04345 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:rry00330]
D C1O28_11035 aspartate aminotransferase family protein K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D C1O28_00195 hypothetical protein K03343 puo; putrescine oxidase [EC:1.4.3.10]
D C1O28_02295 N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D C1O28_03325 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D C1O28_06980 DUF3225 domain-containing protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D C1O28_12145 N-dimethylarginine dimethylaminohydrolase K27545 argZ; arginine dihydrolase [EC:3.5.3.27]
D C1O28_12140 rocD; ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D C1O28_10810 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D C1O28_00090 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D C1O28_05815 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D C1O28_06255 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D C1O28_01950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D C1O28_10490 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:rry00340]
D C1O28_05390 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D C1O28_05385 phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D C1O28_05400 phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D C1O28_04265 bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D C1O28_04260 imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D C1O28_05395 imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D C1O28_04255 imidazoleglycerol-phosphate dehydratase HisB K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D C1O28_14775 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D C1O28_04250 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D C1O28_03675 histidinol phosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15]
D C1O28_04935 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:rry00350]
D C1O28_01950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D C1O28_10490 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D C1O28_14775 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D C1O28_04250 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D C1O28_09695 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D C1O28_00205 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:rry00360]
D C1O28_01325 enoyl-CoA hydratase/isomerase family protein K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D C1O28_01950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D C1O28_10490 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D C1O28_14775 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D C1O28_04250 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D C1O28_03325 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D C1O28_06980 DUF3225 domain-containing protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D C1O28_05650 non-heme iron oxygenase ferredoxin subunit K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component
D C1O28_07930 hypothetical protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00380 Tryptophan metabolism [PATH:rry00380]
D C1O28_12105 aminotransferase class V-fold PLP-dependent enzyme K01556 KYNU; kynureninase [EC:3.7.1.3]
D C1O28_06120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_12900 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_09100 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D C1O28_03035 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D C1O28_03325 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D C1O28_06980 DUF3225 domain-containing protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D C1O28_12490 catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rry00400]
D C1O28_04810 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D C1O28_05260 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D C1O28_03130 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D C1O28_05255 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D C1O28_08920 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D C1O28_05250 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D C1O28_05000 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D C1O28_04265 bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D C1O28_05415 indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D C1O28_05425 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D C1O28_05420 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D C1O28_12625 chorismate mutase K04092 tyrA1; chorismate mutase [EC:5.4.99.5]
D C1O28_00845 aroQ; gamma subclass chorismate mutase AroQ K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D C1O28_04450 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D C1O28_01310 prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D C1O28_01950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D C1O28_10490 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D C1O28_14775 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D C1O28_04250 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:rry00410]
D C1O28_08060 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D C1O28_08075 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D C1O28_01045 aspartate aminotransferase family protein K15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]
D C1O28_11395 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D C1O28_07035 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D C1O28_07040 acyltransferase K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6]
D C1O28_11570 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D C1O28_01025 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:rry00430]
D C1O28_14010 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D C1O28_04685 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D C1O28_01045 aspartate aminotransferase family protein K15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]
D C1O28_09885 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D C1O28_09880 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:rry00450]
D C1O28_10215 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D C1O28_04235 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D C1O28_13625 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D C1O28_06905 aldehyde oxidase K12528 xdhD; putative selenate reductase molybdopterin-binding subunit
D C1O28_09480 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:rry00460]
D C1O28_01220 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D C1O28_14010 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D C1O28_02335 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:rry00470]
D C1O28_01865 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D C1O28_13610 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D C1O28_07750 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D C1O28_12515 phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D C1O28_03605 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D C1O28_04870 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D C1O28_04215 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D C1O28_08305 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:rry00480]
D C1O28_14010 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D C1O28_06820 glutamate--cysteine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D C1O28_06115 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D C1O28_06430 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D C1O28_02300 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D C1O28_09425 NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D C1O28_13555 gnd; 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D C1O28_05610 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D C1O28_04750 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D C1O28_13740 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D C1O28_03700 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D C1O28_12350 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis [PATH:rry00515]
D C1O28_09490 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00514 Other types of O-glycan biosynthesis [PATH:rry00514]
D C1O28_09490 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
D C1O28_11680 hypothetical protein K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51]
C 00540 Lipopolysaccharide biosynthesis [PATH:rry00540]
D C1O28_03890 SIS domain-containing protein K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D C1O28_03885 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D C1O28_03860 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
C 00542 O-Antigen repeat unit biosynthesis [PATH:rry00542]
D C1O28_08175 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rry00541]
D C1O28_02960 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D C1O28_09090 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D C1O28_12700 epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D C1O28_09805 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D C1O28_08225 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D C1O28_08235 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D C1O28_08230 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D C1O28_08240 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D C1O28_09170 epimerase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D C1O28_09195 dTDP-4-keto-6-deoxy-D-glucose epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D C1O28_09200 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D C1O28_09095 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D C1O28_09300 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D C1O28_09355 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D C1O28_09120 GDP-mannose 4,6 dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D C1O28_09125 GDP-mannose 4,6 dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D C1O28_09440 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:rry00550]
D C1O28_07765 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D C1O28_10505 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D C1O28_04885 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D C1O28_04870 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D C1O28_04855 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D C1O28_01230 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D C1O28_13610 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D C1O28_07750 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D C1O28_04860 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D C1O28_07265 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D C1O28_05850 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D C1O28_04865 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D C1O28_04880 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D C1O28_04850 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D C1O28_13410 penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A
D C1O28_05765 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D C1O28_09705 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D C1O28_01235 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D C1O28_06095 DUF1727 domain-containing protein K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
C 00552 Teichoic acid biosynthesis [PATH:rry00552]
D C1O28_05850 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D C1O28_08175 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D C1O28_08200 glycosyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D C1O28_08255 glycosyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D C1O28_11355 LytR family transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D C1O28_09220 LytR family transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:rry00543]
D C1O28_14685 hypothetical protein K16710 wcaK; colanic acid/amylovoran biosynthesis protein WcaK/AmsJ
D C1O28_08175 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D C1O28_10875 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D C1O28_14675 hypothetical protein K13658 gumI; beta-1,4-mannosyltransferase [EC:2.4.1.251]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:rry00730]
D C1O28_07885 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D C1O28_08535 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D C1O28_06635 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D C1O28_06030 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D C1O28_07875 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D C1O28_07880 thiE; thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D C1O28_07735 thiL; thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D C1O28_08925 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D C1O28_05480 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D C1O28_01680 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:rry00740]
D C1O28_09660 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D C1O28_09650 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D C1O28_09665 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D C1O28_09655 riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D C1O28_07960 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D C1O28_01085 NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D C1O28_07875 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
C 00750 Vitamin B6 metabolism [PATH:rry00750]
D C1O28_05515 pyridoxal 5'-phosphate synthase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D C1O28_02720 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D C1O28_08295 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D C1O28_05125 pyridoxal 5'-phosphate synthase lyase subunit PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D C1O28_05130 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:rry00760]
D C1O28_08525 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D C1O28_08520 quinolinate synthase NadA K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D C1O28_08530 nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D C1O28_03600 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D C1O28_09295 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D C1O28_12280 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D C1O28_09600 glutamate--cysteine ligase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D C1O28_12810 TIGR01457 family HAD-type hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D C1O28_06245 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D C1O28_03445 NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D C1O28_12935 ammonia-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D C1O28_04180 CinA family protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D C1O28_09700 nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D C1O28_04405 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D C1O28_09695 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D C1O28_00205 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:rry00770]
D C1O28_03750 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D C1O28_03755 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D C1O28_03760 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D C1O28_03745 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D C1O28_06190 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D C1O28_07980 ketopantoate reductase family protein K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D C1O28_11395 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D C1O28_01850 type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D C1O28_05355 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D C1O28_07705 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D C1O28_05540 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D C1O28_01860 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D C1O28_08555 hypothetical protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D C1O28_10110 4-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D C1O28_07370 hypothetical protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D C1O28_02565 hypothetical protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D C1O28_01725 4-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D C1O28_03835 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D C1O28_07035 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D C1O28_07040 acyltransferase K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6]
C 00780 Biotin metabolism [PATH:rry00780]
D C1O28_07110 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D C1O28_07855 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D C1O28_09240 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:rry00785]
D C1O28_06845 lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D C1O28_06850 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D C1O28_01195 lipoate--protein ligase family protein K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D C1O28_06120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_12900 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_07085 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D C1O28_06125 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D C1O28_14780 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D C1O28_14785 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D C1O28_14790 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D C1O28_08500 gcvP; glycine dehydrogenase (aminomethyl-transferring) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D C1O28_08510 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D C1O28_08505 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:rry00790]
D C1O28_11440 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D C1O28_11430 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D C1O28_11425 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D C1O28_11435 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D C1O28_05085 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D C1O28_06305 bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D C1O28_09660 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D C1O28_13430 aminodeoxychorismate/anthranilate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D C1O28_07425 anthranilate synthase component I family protein K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D C1O28_04725 aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D C1O28_07690 aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D C1O28_06875 GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D C1O28_06885 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D C1O28_06895 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D C1O28_06880 molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
C 00670 One carbon pool by folate [PATH:rry00670]
D C1O28_02340 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D C1O28_02335 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D C1O28_02265 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D C1O28_02270 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D C1O28_05370 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D C1O28_04490 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D C1O28_08510 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D C1O28_00520 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D C1O28_04150 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D C1O28_02325 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D C1O28_09925 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D C1O28_04230 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D C1O28_02955 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:rry00860]
D C1O28_03920 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D C1O28_00570 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D C1O28_00630 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D C1O28_00625 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D C1O28_00610 hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D C1O28_00615 uroporphyrinogen III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D C1O28_00580 FAD-binding protein K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]
D C1O28_00605 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D C1O28_05630 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D C1O28_05635 cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D C1O28_11615 magnesium chelatase K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1]
D C1O28_00410 biliverdin-producing heme oxygenase K21480 HO; heme oxygenase (biliverdin-producing, ferredoxin) [EC:1.14.15.20]
D C1O28_03005 PPOX class F420-dependent enzyme K23825 K23825; F420H(2)-dependent biliverdin reductase [EC:1.3.98.-]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rry00130]
D C1O28_10675 class I SAM-dependent methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D C1O28_10680 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D C1O28_10690 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D C1O28_10740 O-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D C1O28_10710 o-succinylbenzoate--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D C1O28_10715 naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D C1O28_10705 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D C1O28_13060 KR domain-containing protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D C1O28_10635 SDR family NAD(P)-dependent oxidoreductase K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:rry00900]
D C1O28_06030 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D C1O28_08050 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D C1O28_02615 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
D C1O28_09465 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D C1O28_08040 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D C1O28_08630 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D C1O28_03035 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D C1O28_00460 isopentenyl-diphosphate Delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D C1O28_00465 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D C1O28_04825 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D C1O28_08690 isoprenyl transferase K12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D C1O28_07265 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
D C1O28_14315 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D C1O28_05625 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:rry00523]
D C1O28_08225 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D C1O28_08235 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D C1O28_08230 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D C1O28_08240 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D C1O28_09170 epimerase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D C1O28_09195 dTDP-4-keto-6-deoxy-D-glucose epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D C1O28_09200 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D C1O28_10680 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D C1O28_08230 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D C1O28_08240 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D C1O28_09170 epimerase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:rry00946]
D C1O28_01220 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
D C1O28_06925 pucL; urate oxidase K00365 uaZ; urate oxidase [EC:1.7.3.3]
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis [PATH:rry00311]
D C1O28_14255 acetylxylan esterase K01060 cah; cephalosporin-C deacetylase [EC:3.1.1.41]
D C1O28_12990 serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis [PATH:rry00332]
D C1O28_05815 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D C1O28_06255 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:rry00261]
D C1O28_04530 MbtH family protein K05375 mbtH; MbtH protein
D C1O28_09855 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D C1O28_09850 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D C1O28_05950 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D C1O28_12570 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D C1O28_04160 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D C1O28_04125 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:rry00521]
D C1O28_04800 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D C1O28_01305 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D C1O28_14550 myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D C1O28_10630 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D C1O28_08225 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D C1O28_08235 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D C1O28_08230 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D C1O28_08240 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D C1O28_09170 epimerase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D C1O28_09195 dTDP-4-keto-6-deoxy-D-glucose epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D C1O28_09200 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D C1O28_04800 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:rry00525]
D C1O28_08225 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D C1O28_08235 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D C1O28_08230 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D C1O28_08240 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D C1O28_09170 epimerase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:rry00401]
D C1O28_04450 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D C1O28_01950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D C1O28_10490 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D C1O28_14775 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D C1O28_04250 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D C1O28_10550 chorismate-binding protein K13063 phzE; 2-amino-4-deoxychorismate synthase [EC:2.6.1.86]
C 00333 Prodigiosin biosynthesis
D C1O28_07095 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D C1O28_07855 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D C1O28_07105 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:rry00999]
D C1O28_05360 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D C1O28_01220 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:rry00362]
D C1O28_12505 glyoxalase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
D C1O28_07930 hypothetical protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D C1O28_07945 Tautomerase domain-containing protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D C1O28_09100 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D C1O28_03035 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
D C1O28_03325 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D C1O28_06980 DUF3225 domain-containing protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00364 Fluorobenzoate degradation [PATH:rry00364]
D C1O28_10395 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D C1O28_00435 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:rry00361]
D C1O28_10395 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D C1O28_00435 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D C1O28_12505 glyoxalase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00623 Toluene degradation [PATH:rry00623]
D C1O28_10395 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D C1O28_00435 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation [PATH:rry00622]
D C1O28_12505 glyoxalase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
D C1O28_07945 Tautomerase domain-containing protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D C1O28_07930 hypothetical protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00633 Nitrotoluene degradation [PATH:rry00633]
D C1O28_01155 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation [PATH:rry00643]
D C1O28_03325 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D C1O28_06980 DUF3225 domain-containing protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D C1O28_12505 glyoxalase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
D C1O28_14425 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation [PATH:rry00621]
D C1O28_07945 Tautomerase domain-containing protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D C1O28_07930 hypothetical protein K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
D C1O28_10050 oxidoreductase K18069 pht2; phthalate 4,5-dioxygenase reductase component [EC:1.18.1.-]
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:rry03020]
D C1O28_01480 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D C1O28_01485 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D C1O28_01810 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D C1O28_05350 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:rry03010]
D C1O28_05535 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D C1O28_06725 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D C1O28_01610 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D C1O28_05210 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D C1O28_01660 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D C1O28_13645 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D C1O28_01545 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D C1O28_01645 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D C1O28_01840 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D C1O28_01575 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D C1O28_01805 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D C1O28_01540 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D C1O28_01800 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D C1O28_00155 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D C1O28_04075 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D C1O28_06815 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D C1O28_01625 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D C1O28_13655 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D C1O28_01600 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D C1O28_07360 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D C1O28_10465 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D C1O28_01595 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D C1O28_01580 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D C1O28_01585 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D C1O28_01640 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D C1O28_01650 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D C1O28_10295 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D C1O28_13660 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D C1O28_10300 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D C1O28_10470 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D C1O28_01835 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D C1O28_01630 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D C1O28_01670 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D C1O28_01615 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D C1O28_01815 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D C1O28_01655 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D C1O28_06785 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D C1O28_04290 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D C1O28_06275 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D C1O28_01605 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D C1O28_01590 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D C1O28_01635 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D C1O28_09395 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D C1O28_06270 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D C1O28_00145 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D C1O28_01620 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D C1O28_01665 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D C1O28_05720 rpmE2; type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D C1O28_07005 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D C1O28_00150 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D C1O28_13570 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D C1O28_04285 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D C1O28_01795 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D C1O28_04380 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D C1O28_12485 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D C1O28_04385 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D C1O28_12480 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D C1O28_04390 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D C1O28_12475 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:rry00970]
D C1O28_02975 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D C1O28_06230 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D C1O28_13520 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D C1O28_11290 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D C1O28_02795 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D C1O28_06510 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D C1O28_08330 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D C1O28_07205 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D C1O28_11500 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D C1O28_05075 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D C1O28_03930 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D C1O28_09445 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D C1O28_07790 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D C1O28_11495 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D C1O28_00450 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D C1O28_05070 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D C1O28_06365 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D C1O28_06530 tRNA-His K14226 tRNA-His; tRNA His
D C1O28_13525 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D C1O28_03625 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C1O28_05505 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C1O28_05840 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C1O28_13385 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C1O28_03285 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C1O28_02425 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D C1O28_03680 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D C1O28_03480 tRNA-Met K14230 tRNA-Met; tRNA Met
D C1O28_07175 tRNA-Met K14230 tRNA-Met; tRNA Met
D C1O28_10570 tRNA-Met K14230 tRNA-Met; tRNA Met
D C1O28_11505 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D C1O28_04470 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D C1O28_06360 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D C1O28_09795 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D C1O28_09895 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D C1O28_01395 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D C1O28_11315 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D C1O28_02645 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D C1O28_09710 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D C1O28_10575 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D C1O28_10485 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D C1O28_10640 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D C1O28_05065 tRNA-Val K14237 tRNA-Val; tRNA Val
D C1O28_05080 tRNA-Val K14237 tRNA-Val; tRNA Val
D C1O28_07075 tRNA-Val K14237 tRNA-Val; tRNA Val
D C1O28_03920 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D C1O28_06615 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D C1O28_06610 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D C1O28_06620 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D C1O28_05230 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D C1O28_00565 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D C1O28_05115 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D C1O28_01330 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D C1O28_02620 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D C1O28_09480 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D C1O28_05370 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D C1O28_04490 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D C1O28_06325 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D C1O28_07420 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D C1O28_06310 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D C1O28_11390 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D C1O28_08315 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D C1O28_08030 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D C1O28_03235 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D C1O28_04320 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D C1O28_04325 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D C1O28_04375 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D C1O28_03190 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:rry03060]
D C1O28_01675 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D C1O28_10480 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D C1O28_05590 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D C1O28_05170 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D C1O28_05175 protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D C1O28_05165 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D C1O28_13585 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D C1O28_09000 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D C1O28_06840 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D C1O28_09890 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA
D C1O28_06855 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D C1O28_05895 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA
D C1O28_08395 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D C1O28_05900 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D C1O28_06780 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D C1O28_01785 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D C1O28_04920 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D C1O28_14170 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:rry04122]
D C1O28_08535 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D C1O28_06635 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D C1O28_05995 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D C1O28_09535 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D C1O28_04610 hypothetical protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D C1O28_06630 tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D C1O28_06895 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D C1O28_06875 GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D C1O28_06870 hypothetical protein K03636 moaD; sulfur-carrier protein
D C1O28_06865 adenylyltransferase/sulfurtransferase MoeZ K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D C1O28_06885 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
C 03050 Proteasome
C 03018 RNA degradation [PATH:rry03018]
D C1O28_06285 ribonuclease E/G K08300 rne; ribonuclease E [EC:3.1.26.12]
D C1O28_03265 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D C1O28_04090 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D C1O28_14465 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D C1O28_11580 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D C1O28_03845 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D C1O28_08285 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D C1O28_00310 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D C1O28_00525 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D C1O28_02675 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D C1O28_02475 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D C1O28_13640 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:rry03030]
D C1O28_05730 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D C1O28_08590 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D C1O28_04930 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D C1O28_09865 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D C1O28_09725 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D C1O28_07375 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D C1O28_13560 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D C1O28_13665 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D C1O28_07235 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D C1O28_06485 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C1O28_13650 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C1O28_03115 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D C1O28_06775 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D C1O28_05525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D C1O28_06625 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:rry03410]
D C1O28_08775 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D C1O28_07990 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D C1O28_04360 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D C1O28_06995 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D C1O28_05135 endonuclease VIII K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D C1O28_01405 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D C1O28_06415 DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D C1O28_11085 DNA-3-methyladenine glycosylase 2 family protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D C1O28_04010 DNA-3-methyladenine glycosylase 2 family protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D C1O28_08120 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D C1O28_12840 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D C1O28_03195 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D C1O28_05525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D C1O28_06625 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:rry03420]
D C1O28_09385 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D C1O28_05550 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D C1O28_05545 excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D C1O28_05555 excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D C1O28_02065 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D C1O28_03435 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D C1O28_03450 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D C1O28_05525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D C1O28_06625 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:rry03430]
D C1O28_02065 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D C1O28_03435 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D C1O28_03450 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D C1O28_08635 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D C1O28_08640 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D C1O28_06485 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C1O28_13650 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C1O28_04930 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D C1O28_13560 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D C1O28_09865 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D C1O28_07375 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D C1O28_09725 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D C1O28_05730 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D C1O28_08590 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D C1O28_06625 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:rry03440]
D C1O28_06485 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C1O28_13650 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C1O28_13550 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D C1O28_07270 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D C1O28_09860 recombination protein RecR K06187 recR; recombination protein RecR
D C1O28_04195 recA; recombinase RecA K03553 recA; recombination protein RecA
D C1O28_05525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D C1O28_05155 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D C1O28_05160 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D C1O28_05150 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D C1O28_07710 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D C1O28_13375 transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D C1O28_04930 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D C1O28_13560 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D C1O28_09865 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D C1O28_07375 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D C1O28_09725 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D C1O28_05730 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D C1O28_08590 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D C1O28_05365 preprotein translocase subunit SecA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining [PATH:rry03450]
D C1O28_09585 hypothetical protein K10979 ku; DNA end-binding protein Ku
D C1O28_12365 hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:rry03250]
D C1O28_13455 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:rry02010]
D C1O28_12915 aliphatic sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D C1O28_12920 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D C1O28_12910 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D C1O28_14400 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D C1O28_14390 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein
D C1O28_14385 molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D C1O28_09965 glycine/betaine ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein
D C1O28_09970 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D C1O28_07535 glycine/betaine ABC transporter K05845 opuC; osmoprotectant transport system substrate-binding protein
D C1O28_07540 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D C1O28_07545 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D C1O28_07550 ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D C1O28_02635 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D C1O28_09940 sugar ABC transporter substrate-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D C1O28_14040 sugar ABC transporter substrate-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D C1O28_14045 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D C1O28_14050 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D C1O28_10270 carbohydrate ABC transporter substrate-binding protein K10232 aglE; alpha-glucoside transport system substrate-binding protein
D C1O28_10265 sugar ABC transporter permease K10233 aglF; alpha-glucoside transport system permease protein
D C1O28_10260 carbohydrate ABC transporter permease K10234 aglG; alpha-glucoside transport system permease protein
D C1O28_13760 carbohydrate ABC transporter substrate-binding protein K10240 cebE; cellobiose transport system substrate-binding protein
D C1O28_11940 ABC transporter substrate-binding protein K10240 cebE; cellobiose transport system substrate-binding protein
D C1O28_13765 sugar ABC transporter permease K10241 cebF; cellobiose transport system permease protein
D C1O28_11935 sugar ABC transporter permease K10241 cebF; cellobiose transport system permease protein
D C1O28_13770 carbohydrate ABC transporter permease K10242 cebG; cellobiose transport system permease protein
D C1O28_11930 carbohydrate ABC transporter permease K10242 cebG; cellobiose transport system permease protein
D C1O28_10080 sugar ABC transporter substrate-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D C1O28_13350 ABC transporter substrate-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D C1O28_10090 sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein
D C1O28_13360 sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein
D C1O28_10085 ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D C1O28_13355 ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D C1O28_09345 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D C1O28_09335 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D C1O28_09330 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D C1O28_09340 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D C1O28_14520 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D C1O28_14515 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D C1O28_14510 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D C1O28_13185 sugar ABC transporter substrate-binding protein K10552 frcB; fructose transport system substrate-binding protein
D C1O28_13190 ABC transporter permease K10553 frcC; fructose transport system permease protein
D C1O28_13195 sugar ABC transporter ATP-binding protein K10554 frcA; fructose transport system ATP-binding protein
D C1O28_02465 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D C1O28_02460 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D C1O28_02455 pstA; phosphate ABC transporter permease PtsA K02038 pstA; phosphate transport system permease protein
D C1O28_02450 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D C1O28_04305 ABC transporter substrate-binding protein K10005 gluB; glutamate transport system substrate-binding protein
D C1O28_04310 amino acid ABC transporter permease K10006 gluC; glutamate transport system permease protein
D C1O28_04315 amino acid ABC transporter permease K10007 gluD; glutamate transport system permease protein
D C1O28_04300 amino acid ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D C1O28_01515 polar amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D C1O28_01520 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein
D C1O28_01525 glnQ; amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D C1O28_01920 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D C1O28_01995 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D C1O28_01990 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D C1O28_01985 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D C1O28_01980 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D C1O28_14480 methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D C1O28_14470 ABC transporter permease K02072 metI; D-methionine transport system permease protein
D C1O28_14475 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D C1O28_08485 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D C1O28_08480 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D C1O28_08475 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D C1O28_08470 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D C1O28_04505 ABC transporter substrate-binding protein K25287 desE; iron-desferrioxamine transport system substrate-binding protein
D C1O28_11995 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D C1O28_12000 iron ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein
D C1O28_12005 ABC transporter permease K23187 fepG; iron-siderophore transport system permease protein
D C1O28_04520 iron ABC transporter permease K23187 fepG; iron-siderophore transport system permease protein
D C1O28_12010 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D C1O28_04525 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D C1O28_05665 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component
D C1O28_06545 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D C1O28_08835 ABC transporter K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D C1O28_03645 ABC transporter permease K09811 ftsX; cell division transport system permease protein
D C1O28_03640 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D C1O28_12835 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D C1O28_12830 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D C1O28_07435 cydC; thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D C1O28_07440 cydD; thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D C1O28_10180 hypothetical protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
C 02060 Phosphotransferase system (PTS) [PATH:rry02060]
D C1O28_01705 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D C1O28_01700 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D C1O28_01715 PTS mannitol transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D C1O28_01710 PTS mannitol transporter subunit IICBA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D C1O28_01695 hypothetical protein K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D C1O28_09310 PTS ascorbate transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D C1O28_09305 PTS ascorbate transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D C1O28_03200 PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D C1O28_03210 PTS fructose transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D C1O28_03215 1-phosphofructokinase family hexose kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:rry03070]
D C1O28_05170 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D C1O28_05175 protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D C1O28_10480 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D C1O28_05590 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D C1O28_01675 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D C1O28_05165 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D C1O28_13585 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D C1O28_09000 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D C1O28_06855 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D C1O28_06840 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D C1O28_05895 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA
D C1O28_08395 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D C1O28_05900 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:rry02020]
D C1O28_02525 two-component sensor histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D C1O28_02530 DNA-binding response regulator K07776 regX3; two-component system, OmpR family, response regulator RegX3
D C1O28_02465 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D C1O28_13340 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D C1O28_13335 DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D C1O28_05635 cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D C1O28_03100 glycoside hydrolase 68 family protein K00692 sacB; levansucrase [EC:2.4.1.10]
D C1O28_03510 PDZ domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D C1O28_09020 sensor histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D C1O28_09025 DNA-binding response regulator K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D C1O28_13565 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D C1O28_09250 DUF2156 domain-containing protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D C1O28_00065 sensor histidine kinase K18351 vanSAc; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D C1O28_00070 DNA-binding response regulator K18352 vanRAc; two-component system, OmpR family, response regulator VanR
D C1O28_00080 vanA; D-alanine--(R)-lactate ligase K15739 vanB; D-alanine---(R)-lactate ligase [EC:6.1.2.1]
D C1O28_00085 lactate dehydrogenase K18347 vanH; D-specific alpha-keto acid dehydrogenase [EC:1.1.1.-]
D C1O28_00075 D-Ala-D-Ala dipeptidase VanX K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D C1O28_01235 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D C1O28_06570 hypothetical protein K18353 vanJ; vancomycin resistance protein VanJ
D C1O28_03060 CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D C1O28_01505 DNA-binding response regulator K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D C1O28_08820 DNA-binding response regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D C1O28_09770 hypothetical protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D C1O28_06145 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C1O28_06185 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C1O28_03035 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D C1O28_00830 C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein
D C1O28_07450 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D C1O28_07445 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D C1O28_14760 low molecular weight phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D C1O28_09810 low molecular weight phosphatase family protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:rry02024]
D C1O28_13330 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D C1O28_04810 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D C1O28_10550 chorismate-binding protein K13063 phzE; 2-amino-4-deoxychorismate synthase [EC:2.6.1.86]
D C1O28_13335 DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D C1O28_14420 hypothetical protein K11531 lsrR; lsr operon transcriptional repressor
D C1O28_08745 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D C1O28_08740 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D C1O28_08730 ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D C1O28_01920 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D C1O28_01995 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D C1O28_01990 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D C1O28_01985 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D C1O28_01980 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D C1O28_14445 IclR family transcriptional regulator K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor
D C1O28_13240 hypothetical protein K20276 bapA; large repetitive protein
D C1O28_06590 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_04795 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_02075 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_03045 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_09650 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D C1O28_08485 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D C1O28_08480 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D C1O28_08475 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D C1O28_08470 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D C1O28_11635 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D C1O28_13145 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D C1O28_07230 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D C1O28_11630 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D C1O28_13160 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D C1O28_07225 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D C1O28_11625 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D C1O28_13165 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D C1O28_07220 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D C1O28_11620 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D C1O28_13170 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D C1O28_07215 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D C1O28_13585 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D C1O28_10480 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D C1O28_05590 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D C1O28_01675 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D C1O28_05165 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D C1O28_09000 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D C1O28_06855 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D C1O28_06840 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
D C1O28_14520 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
C 02040 Flagellar assembly [PATH:rry02040]
D C1O28_01515 polar amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D C1O28_06100 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D C1O28_03265 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:rry01501]
D C1O28_08485 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D C1O28_08480 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D C1O28_08475 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D C1O28_08470 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D C1O28_12990 serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D C1O28_04850 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:rry01502]
D C1O28_00065 sensor histidine kinase K18351 vanSAc; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D C1O28_00070 DNA-binding response regulator K18352 vanRAc; two-component system, OmpR family, response regulator VanR
D C1O28_00075 D-Ala-D-Ala dipeptidase VanX K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D C1O28_13610 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D C1O28_07750 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D C1O28_01865 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D C1O28_00085 lactate dehydrogenase K18347 vanH; D-specific alpha-keto acid dehydrogenase [EC:1.1.1.-]
D C1O28_00080 vanA; D-alanine--(R)-lactate ligase K15739 vanB; D-alanine---(R)-lactate ligase [EC:6.1.2.1]
D C1O28_04860 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D C1O28_04865 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D C1O28_04880 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D C1O28_01235 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D C1O28_06570 hypothetical protein K18353 vanJ; vancomycin resistance protein VanJ
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rry01503]
D C1O28_13455 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D C1O28_09250 DUF2156 domain-containing protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:rry01000]
C 01001 Protein kinases [BR:rry01001]
D C1O28_01015 serine/threonine protein kinase K14949 pknG; serine/threonine-protein kinase PknG [EC:2.7.11.1]
D C1O28_00360 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D C1O28_01080 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D C1O28_04815 pknB; Stk1 family PASTA domain-containing Ser/Thr kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D C1O28_13415 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D C1O28_13420 pknB; Stk1 family PASTA domain-containing Ser/Thr kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D C1O28_08625 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D C1O28_09815 lipopolysaccharide biosynthesis protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D C1O28_13100 hypothetical protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D C1O28_02525 two-component sensor histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D C1O28_13340 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D C1O28_09020 sensor histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D C1O28_00065 sensor histidine kinase K18351 vanSAc; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D C1O28_10370 HAMP domain-containing protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D C1O28_02680 HAMP domain-containing protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D C1O28_12090 sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D C1O28_08370 sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D C1O28_00825 sensor histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]
D C1O28_01175 sensor histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]
D C1O28_08990 ATPase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:rry01009]
D C1O28_08095 serine/threonine-protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D C1O28_13400 Stp1/IreP family PP2C-type Ser/Thr phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D C1O28_07780 serine/threonine-protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D C1O28_05700 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:rry01002]
D C1O28_04920 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D C1O28_08660 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D C1O28_10820 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D C1O28_02035 glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D C1O28_13905 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein K07010 K07010; putative glutamine amidotransferase
D C1O28_03375 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein K07010 K07010; putative glutamine amidotransferase
D C1O28_03495 CHAP domain-containing protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D C1O28_11485 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D C1O28_02730 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D C1O28_12260 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D C1O28_05435 glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D C1O28_01855 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D C1O28_13435 class E sortase K07284 srtA; sortase A [EC:3.4.22.70]
D C1O28_11520 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein
D C1O28_08490 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein
D C1O28_10385 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein
D C1O28_06430 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D C1O28_12995 peptidase M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D C1O28_01235 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D C1O28_00075 D-Ala-D-Ala dipeptidase VanX K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D C1O28_06115 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D C1O28_02890 peptidase M20 K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11]
D C1O28_08415 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D C1O28_07815 acetylornithine deacetylase K13049 PM20D1; carboxypeptidase PM20D1 [EC:3.4.17.-]
D C1O28_06965 allantoate amidohydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D C1O28_06795 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D C1O28_01685 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D C1O28_03390 aminopeptidase P family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D C1O28_11445 ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D C1O28_08760 protease K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D C1O28_00955 cyclic nucleotide-binding protein K16922 yydH; putative peptide zinc metalloprotease protein
D C1O28_04015 protease PrsW K24131 prsW; protease PrsW [EC:3.4.-.-]
D C1O28_03510 PDZ domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D C1O28_07835 S9 family peptidase K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D C1O28_05765 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D C1O28_09705 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D C1O28_06345 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D C1O28_06350 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D C1O28_03465 PDZ domain-containing protein K07177 K07177; Lon-like protease
D C1O28_04240 transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D C1O28_06780 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D C1O28_01785 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D C1O28_14170 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D C1O28_08780 peptidase S51 K13282 cphB; cyanophycinase [EC:3.4.15.6]
D C1O28_14010 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
C 01003 Glycosyltransferases [BR:rry01003]
D C1O28_09180 polyprenol monophosphomannose synthase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D C1O28_09490 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
D C1O28_09360 glycosyltransferase family 1 protein K12583 mgtA; phosphatidylinositol alpha 1,6-mannosyltransferase [EC:2.4.1.-]
D C1O28_10205 hypothetical protein K16150 K16150; glycogen synthase [EC:2.4.1.11]
D C1O28_05710 glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D C1O28_08200 glycosyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D C1O28_08255 glycosyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D C1O28_08175 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D C1O28_03100 glycoside hydrolase 68 family protein K00692 sacB; levansucrase [EC:2.4.1.10]
D C1O28_00550 hypothetical protein K14337 mptA; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D C1O28_14675 hypothetical protein K13658 gumI; beta-1,4-mannosyltransferase [EC:2.4.1.251]
D C1O28_09190 glycosyltransferase family 2 protein K16870 wbbL; N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase [EC:2.4.1.289]
D C1O28_03720 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:rry01005]
D C1O28_03890 SIS domain-containing protein K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D C1O28_03885 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D C1O28_03860 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D C1O28_08175 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rry01011]
D C1O28_07765 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D C1O28_10505 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D C1O28_04885 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D C1O28_04870 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D C1O28_04855 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D C1O28_01230 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D C1O28_13610 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D C1O28_07750 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D C1O28_01865 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D C1O28_03605 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D C1O28_04865 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D C1O28_04880 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D C1O28_05850 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D C1O28_13630 mviN; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D C1O28_04850 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D C1O28_13410 penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A
D C1O28_05765 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D C1O28_09705 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D C1O28_00075 D-Ala-D-Ala dipeptidase VanX K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D C1O28_01235 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D C1O28_03495 CHAP domain-containing protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D C1O28_11485 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D C1O28_02730 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D C1O28_13435 class E sortase K07284 srtA; sortase A [EC:3.4.22.70]
D C1O28_05240 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
C 01004 Lipid biosynthesis proteins [BR:rry01004]
D C1O28_07095 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D C1O28_07100 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D C1O28_07110 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D C1O28_07855 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D C1O28_06460 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D C1O28_11900 enoyl-[acyl-carrier-protein] reductase FabI K11611 inhA; meromycolic acid enoyl-[acyl-carrier-protein] reductase [EC:1.3.1.118]
D C1O28_09775 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_12925 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_13950 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D C1O28_06590 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_04795 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_02075 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_03045 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_08065 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D C1O28_04805 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:rry01008]
D C1O28_04530 MbtH family protein K05375 mbtH; MbtH protein
C 01006 Prenyltransferases [BR:rry01006]
D C1O28_04825 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D C1O28_00465 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D C1O28_08690 isoprenyl transferase K12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D C1O28_07265 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D C1O28_04210 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D C1O28_10705 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D C1O28_05630 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:rry01007]
D C1O28_03920 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D C1O28_04375 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D C1O28_03190 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D C1O28_02620 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D C1O28_08315 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D C1O28_09480 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D C1O28_06310 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D C1O28_06325 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D C1O28_07420 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D C1O28_11390 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D C1O28_03235 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D C1O28_00565 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D C1O28_01330 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D C1O28_08030 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D C1O28_05115 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D C1O28_05230 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D C1O28_04320 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D C1O28_04325 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D C1O28_01950 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D C1O28_10490 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D C1O28_03505 aminotransferase class V-fold PLP-dependent enzyme K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D C1O28_14775 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D C1O28_04250 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D C1O28_12140 rocD; ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D C1O28_04345 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D C1O28_08060 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D C1O28_08075 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D C1O28_11035 aspartate aminotransferase family protein K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D C1O28_00630 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D C1O28_03835 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D C1O28_02720 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D C1O28_06970 alanine--glyoxylate aminotransferase family protein K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:rry00194]
D C1O28_08130 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D C1O28_08135 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D C1O28_08140 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D C1O28_08145 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D C1O28_08150 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D C1O28_08155 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D C1O28_08160 atpE; ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D C1O28_08165 atpB; ATP synthase F0 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:rry03000]
D C1O28_14590 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D C1O28_02415 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D C1O28_11085 DNA-3-methyladenine glycosylase 2 family protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D C1O28_04010 DNA-3-methyladenine glycosylase 2 family protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D C1O28_02365 DeoR/GlpR transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D C1O28_03220 DeoR/GlpR transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D C1O28_13140 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D C1O28_13180 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D C1O28_14035 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D C1O28_00130 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D C1O28_04600 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D C1O28_08100 Lrp/AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D C1O28_12205 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D C1O28_11540 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D C1O28_00540 MerR family DNA-binding transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D C1O28_14835 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D C1O28_12495 transcriptional repressor K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
D C1O28_14445 IclR family transcriptional regulator K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor
D C1O28_10795 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D C1O28_11885 hypothetical protein K21886 nmtR; ArsR family transcriptional regulator, nickel/cobalt-responsive transcriptional repressor
D C1O28_11775 ArsR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D C1O28_10070 transcriptional regulator K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
D C1O28_03140 helix-turn-helix domain-containing protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D C1O28_04185 XRE family transcriptional regulator K27043 clgR; XRE family transcriptional regulator, stress-response regulator
D C1O28_02725 metal-dependent transcriptional regulator K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D C1O28_09240 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D C1O28_00090 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D C1O28_01690 PRD domain-containing protein K03491 licR; probable licABCH operon transcriptional regulator
D C1O28_08985 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D C1O28_09085 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D C1O28_07900 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D C1O28_11845 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D C1O28_13605 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D C1O28_05475 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D C1O28_02610 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D C1O28_07330 heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D C1O28_03150 transcriptional regulator K05346 deoR; deoxyribonucleoside regulator
D C1O28_14420 hypothetical protein K11531 lsrR; lsr operon transcriptional repressor
D C1O28_05315 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D C1O28_00640 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D C1O28_04940 transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D C1O28_04835 transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:rry03021]
D C1O28_01810 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D C1O28_01480 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D C1O28_01485 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D C1O28_05350 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D C1O28_06100 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D C1O28_02440 RNA polymerase subunit sigma K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D C1O28_08915 RNA polymerase subunit sigma-70 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D C1O28_01275 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D C1O28_02895 RNA polymerase subunit sigma K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D C1O28_03915 hypothetical protein K03090 sigB; RNA polymerase sigma-B factor
D C1O28_08015 transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D C1O28_05310 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D C1O28_10475 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D C1O28_00640 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D C1O28_08715 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D C1O28_08285 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:rry03019]
D C1O28_06285 ribonuclease E/G K08300 rne; ribonuclease E [EC:3.1.26.12]
D C1O28_07000 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D C1O28_00310 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D C1O28_06525 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D C1O28_14465 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D C1O28_11580 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D C1O28_03845 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D C1O28_03265 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D C1O28_04090 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D C1O28_08285 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D C1O28_00525 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D C1O28_02675 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D C1O28_02475 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D C1O28_13640 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D C1O28_05560 RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ
D C1O28_05905 RNA helicase K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6]
D C1O28_09550 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:rry03011]
D C1O28_05535 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D C1O28_06725 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D C1O28_01610 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D C1O28_05210 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D C1O28_01660 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D C1O28_13645 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D C1O28_01545 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D C1O28_01645 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D C1O28_01840 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D C1O28_01575 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D C1O28_01805 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D C1O28_01540 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D C1O28_01800 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D C1O28_00155 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D C1O28_04075 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D C1O28_06815 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D C1O28_01625 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D C1O28_13655 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D C1O28_01600 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D C1O28_07360 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D C1O28_10465 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D C1O28_01595 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D C1O28_01580 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D C1O28_01585 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D C1O28_01640 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D C1O28_01650 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D C1O28_13660 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D C1O28_10300 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D C1O28_10470 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D C1O28_10295 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D C1O28_01835 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D C1O28_01630 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D C1O28_01670 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D C1O28_01615 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D C1O28_01815 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D C1O28_01655 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D C1O28_06785 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D C1O28_04290 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D C1O28_06275 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D C1O28_01605 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D C1O28_01590 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D C1O28_01635 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D C1O28_06270 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D C1O28_00145 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D C1O28_01620 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D C1O28_01665 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D C1O28_05720 rpmE2; type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D C1O28_07005 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D C1O28_00150 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D C1O28_13570 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D C1O28_04285 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D C1O28_01795 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D C1O28_09395 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D C1O28_04390 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D C1O28_12475 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D C1O28_04380 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D C1O28_12485 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D C1O28_04385 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D C1O28_12480 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:rry03009]
D C1O28_07000 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D C1O28_06525 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D C1O28_07295 GTPase Era K03595 era; GTPase
D C1O28_06265 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D C1O28_00640 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D C1O28_08015 transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D C1O28_05310 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D C1O28_10475 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D C1O28_09470 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D C1O28_05375 methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D C1O28_04220 methyltransferase domain-containing protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D C1O28_07200 methyltransferase domain-containing protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D C1O28_07730 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D C1O28_07320 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D C1O28_13595 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D C1O28_04840 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D C1O28_09485 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D C1O28_00380 methyltransferase domain-containing protein K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D C1O28_02625 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D C1O28_04445 rRNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D C1O28_04925 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D C1O28_01880 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D C1O28_02965 N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D C1O28_06805 ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D C1O28_11015 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D C1O28_00920 cytoplasmic protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D C1O28_06285 ribonuclease E/G K08300 rne; ribonuclease E [EC:3.1.26.12]
D C1O28_05235 Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D C1O28_14465 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D C1O28_08925 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D C1O28_04460 ribosome biogenesis GTPase Der K03977 engA; GTPase
D C1O28_04225 hflX; GTPase HflX K03665 hflX; GTPase
D C1O28_08180 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D C1O28_05185 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D C1O28_08000 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
D C1O28_13675 RNA-binding S4 domain-containing protein K14761 rlbA; ribosome-associated protein
D C1O28_06235 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
D C1O28_07305 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
D C1O28_08585 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
D C1O28_07010 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:rry03016]
D C1O28_03920 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D C1O28_08030 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D C1O28_06310 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D C1O28_07420 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D C1O28_09480 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D C1O28_08315 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D C1O28_11390 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D C1O28_05230 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D C1O28_00565 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D C1O28_05115 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D C1O28_01330 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D C1O28_02620 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D C1O28_06325 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D C1O28_03235 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D C1O28_04320 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D C1O28_04325 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D C1O28_04375 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D C1O28_03190 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D C1O28_07315 HIT domain-containing protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D C1O28_05870 tRNA (adenine-N1)-methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D C1O28_01825 tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D C1O28_07975 tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D C1O28_08535 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D C1O28_06635 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D C1O28_08180 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D C1O28_04210 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D C1O28_13575 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D C1O28_06205 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
D C1O28_03610 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D C1O28_06015 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D C1O28_06645 ybaK; Cys-tRNA(Pro) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D C1O28_07250 hypothetical protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D C1O28_10825 nucleoside deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D C1O28_04205 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D C1O28_06800 tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D C1O28_04295 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
D C1O28_06630 tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D C1O28_04650 Fe-S cluster assembly protein HesB K13628 iscA; iron-sulfur cluster assembly protein
D C1O28_02500 folate-binding protein K06980 ygfZ; tRNA-modifying protein YgfZ
D C1O28_11475 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D C1O28_01875 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D C1O28_01885 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D C1O28_01870 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D C1O28_04090 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:rry03012]
D C1O28_08005 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D C1O28_04280 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D C1O28_06720 elongation factor Ts K02357 tsf; elongation factor Ts
D C1O28_01555 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D C1O28_01550 fusA; elongation factor G K02355 fusA; elongation factor G
D C1O28_08280 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D C1O28_06710 ribosome recycling factor K02838 frr; ribosome recycling factor
D C1O28_08275 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D C1O28_13445 putative protein N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D C1O28_09390 aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D C1O28_01790 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D C1O28_05305 efp; elongation factor P K02356 efp; elongation factor P
D C1O28_03635 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:rry03110]
D C1O28_12955 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D C1O28_11345 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D C1O28_10130 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D C1O28_06340 ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D C1O28_00525 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D C1O28_02675 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D C1O28_07325 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D C1O28_00535 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D C1O28_00530 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D C1O28_02310 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D C1O28_04715 RNA-binding protein S4 K04762 hslR; ribosome-associated heat shock protein Hsp15
D C1O28_01910 co-chaperone GroES K04078 groES; chaperonin GroES
D C1O28_11445 ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D C1O28_08165 atpB; ATP synthase F0 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D C1O28_00895 DUF1775 domain-containing protein K09796 pccA; periplasmic copper chaperone A
D C1O28_13455 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D C1O28_05200 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D C1O28_04740 trxA; thioredoxin K03671 TXN; thioredoxin
D C1O28_13620 trxA; thioredoxin K03671 TXN; thioredoxin
D C1O28_06665 co-chaperone YbbN K05838 ybbN; putative thioredoxin
C 04131 Membrane trafficking [BR:rry04131]
D C1O28_06295 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D C1O28_03965 flotillin family protein K07192 FLOT; flotillin
D C1O28_05575 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D C1O28_02515 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D C1O28_05445 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D C1O28_00495 MFS transporter K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system
C 03051 Proteasome [BR:rry03051]
D C1O28_05880 WYL domain-containing protein K13572 pafB; proteasome accessory factor B
D C1O28_05885 WYL domain-containing protein K13573 pafC; proteasome accessory factor C
C 03032 DNA replication proteins [BR:rry03032]
D C1O28_03115 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D C1O28_14590 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D C1O28_02415 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D C1O28_00405 helicase K15255 PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]
D C1O28_00395 integration host factor K03530 hupB; DNA-binding protein HU-beta
D C1O28_13565 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D C1O28_13665 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D C1O28_07235 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D C1O28_06485 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C1O28_13650 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C1O28_04930 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D C1O28_13560 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D C1O28_07375 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D C1O28_09725 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D C1O28_05730 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D C1O28_08590 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D C1O28_09865 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D C1O28_06775 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D C1O28_05525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D C1O28_06625 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D C1O28_06075 DNA topoisomerase 4 subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D C1O28_13535 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D C1O28_06080 type IIA DNA topoisomerase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D C1O28_13540 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D C1O28_01570 DNA topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D C1O28_09735 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:rry03036]
D C1O28_14590 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D C1O28_02415 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D C1O28_07000 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D C1O28_03965 flotillin family protein K07192 FLOT; flotillin
D C1O28_13275 Lsr2 family protein K26249 lsr2; nucleoid-associated protein Lsr2
D C1O28_00395 integration host factor K03530 hupB; DNA-binding protein HU-beta
D C1O28_13565 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D C1O28_10720 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D C1O28_06405 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D C1O28_06860 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D C1O28_04435 segregation/condensation protein A K05896 scpA; segregation and condensation protein A
D C1O28_04440 scpB; SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B
D C1O28_03640 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D C1O28_04850 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D C1O28_11260 hypothetical protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D C1O28_08945 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D C1O28_05050 hypothetical protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D C1O28_04170 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D C1O28_02125 essC; type VII secretion protein EssC K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D C1O28_04890 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D C1O28_04875 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D C1O28_03645 ABC transporter permease K09811 ftsX; cell division transport system permease protein
D C1O28_04895 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D C1O28_05990 cell division protein ZapE K06916 zapE; cell division protein ZapE
D C1O28_04905 DUF552 domain-containing protein K09772 sepF; cell division inhibitor SepF
D C1O28_13600 ParA family protein K03496 parA; chromosome partitioning protein
D C1O28_04430 ParA family protein K03496 parA; chromosome partitioning protein
D C1O28_04775 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D C1O28_11845 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D C1O28_13605 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D C1O28_13595 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D C1O28_06740 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D C1O28_04425 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D C1O28_08390 MRP family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D C1O28_11760 cell filamentation protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D C1O28_13670 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D C1O28_05565 whiA; DNA-binding protein WhiA K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:rry03400]
D C1O28_08115 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D C1O28_10870 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D C1O28_08775 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D C1O28_04360 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D C1O28_07990 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D C1O28_00560 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D C1O28_13465 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D C1O28_08515 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D C1O28_04735 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D C1O28_06050 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D C1O28_00375 cryptochrome/photolyase family protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D C1O28_11085 DNA-3-methyladenine glycosylase 2 family protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D C1O28_04010 DNA-3-methyladenine glycosylase 2 family protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D C1O28_08120 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D C1O28_06995 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D C1O28_05135 endonuclease VIII K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D C1O28_01405 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D C1O28_06415 DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D C1O28_12840 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D C1O28_03195 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D C1O28_06625 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D C1O28_05525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D C1O28_05550 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D C1O28_05545 excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D C1O28_05555 excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D C1O28_02065 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D C1O28_03435 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D C1O28_03450 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D C1O28_01480 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D C1O28_01485 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D C1O28_01810 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D C1O28_05350 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D C1O28_09385 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D C1O28_08635 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D C1O28_08640 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D C1O28_04930 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D C1O28_13560 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D C1O28_07375 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D C1O28_09725 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D C1O28_05730 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D C1O28_08590 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D C1O28_09865 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D C1O28_06485 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C1O28_13650 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C1O28_04195 recA; recombinase RecA K03553 recA; recombination protein RecA
D C1O28_05155 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D C1O28_05160 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D C1O28_05150 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D C1O28_05365 preprotein translocase subunit SecA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D C1O28_07870 ATPase K03546 sbcC; DNA repair protein SbcC/Rad50
D C1O28_07865 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D C1O28_11325 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D C1O28_13550 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D C1O28_07710 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D C1O28_13375 transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D C1O28_07270 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D C1O28_09860 recombination protein RecR K06187 recR; recombination protein RecR
D C1O28_04410 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D C1O28_09910 DUF853 domain-containing protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D C1O28_09585 hypothetical protein K10979 ku; DNA end-binding protein Ku
D C1O28_12365 hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D C1O28_06075 DNA topoisomerase 4 subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D C1O28_13535 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D C1O28_06080 type IIA DNA topoisomerase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D C1O28_13540 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D C1O28_01570 DNA topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D C1O28_09735 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D C1O28_00395 integration host factor K03530 hupB; DNA-binding protein HU-beta
D C1O28_11580 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D C1O28_03845 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D C1O28_06575 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D C1O28_04240 transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D C1O28_05805 DNA polymerase Y family protein K14161 imuB; protein ImuB
D C1O28_05800 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D C1O28_04200 regulatory protein RecX K03565 recX; regulatory protein
D C1O28_01410 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D C1O28_02470 NUDIX hydrolase K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D C1O28_04420 NUDIX hydrolase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D C1O28_12245 NUDIX hydrolase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D C1O28_10160 class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D C1O28_10155 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:rry03029]
D C1O28_08005 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D C1O28_04280 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D C1O28_06720 elongation factor Ts K02357 tsf; elongation factor Ts
D C1O28_01555 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D C1O28_01550 fusA; elongation factor G K02355 fusA; elongation factor G
D C1O28_07295 GTPase Era K03595 era; GTPase
D C1O28_04375 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D C1O28_07420 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D C1O28_00565 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D C1O28_08315 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D C1O28_06615 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D C1O28_06610 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D C1O28_06620 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D C1O28_00405 helicase K15255 PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]
D C1O28_06485 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C1O28_13650 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C1O28_00525 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D C1O28_00530 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D C1O28_02675 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D C1O28_01910 co-chaperone GroES K04078 groES; chaperonin GroES
D C1O28_07325 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D C1O28_00535 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D C1O28_08535 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D C1O28_06635 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D C1O28_08390 MRP family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D C1O28_05630 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D C1O28_05635 cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D C1O28_13585 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:rry02000]
D C1O28_12835 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D C1O28_12830 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D C1O28_10245 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D C1O28_02280 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D C1O28_02285 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D C1O28_07435 cydC; thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D C1O28_07440 cydD; thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D C1O28_10180 hypothetical protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D C1O28_09455 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D C1O28_14400 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D C1O28_14390 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein
D C1O28_14385 molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D C1O28_12915 aliphatic sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D C1O28_12920 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein
D C1O28_12910 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D C1O28_08745 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D C1O28_08740 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D C1O28_08730 ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D C1O28_09965 glycine/betaine ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein
D C1O28_09970 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D C1O28_07535 glycine/betaine ABC transporter K05845 opuC; osmoprotectant transport system substrate-binding protein
D C1O28_07540 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D C1O28_07545 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D C1O28_07550 ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D C1O28_07015 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D C1O28_03245 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D C1O28_02635 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D C1O28_09940 sugar ABC transporter substrate-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D C1O28_14040 sugar ABC transporter substrate-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D C1O28_14045 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D C1O28_14050 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D C1O28_10270 carbohydrate ABC transporter substrate-binding protein K10232 aglE; alpha-glucoside transport system substrate-binding protein
D C1O28_10265 sugar ABC transporter permease K10233 aglF; alpha-glucoside transport system permease protein
D C1O28_10260 carbohydrate ABC transporter permease K10234 aglG; alpha-glucoside transport system permease protein
D C1O28_13760 carbohydrate ABC transporter substrate-binding protein K10240 cebE; cellobiose transport system substrate-binding protein
D C1O28_11940 ABC transporter substrate-binding protein K10240 cebE; cellobiose transport system substrate-binding protein
D C1O28_13765 sugar ABC transporter permease K10241 cebF; cellobiose transport system permease protein
D C1O28_11935 sugar ABC transporter permease K10241 cebF; cellobiose transport system permease protein
D C1O28_13770 carbohydrate ABC transporter permease K10242 cebG; cellobiose transport system permease protein
D C1O28_11930 carbohydrate ABC transporter permease K10242 cebG; cellobiose transport system permease protein
D C1O28_10080 sugar ABC transporter substrate-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D C1O28_13350 ABC transporter substrate-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D C1O28_10090 sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein
D C1O28_13360 sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein
D C1O28_10085 ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D C1O28_13355 ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D C1O28_13185 sugar ABC transporter substrate-binding protein K10552 frcB; fructose transport system substrate-binding protein
D C1O28_13190 ABC transporter permease K10553 frcC; fructose transport system permease protein
D C1O28_13195 sugar ABC transporter ATP-binding protein K10554 frcA; fructose transport system ATP-binding protein
D C1O28_14520 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D C1O28_14515 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D C1O28_14510 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D C1O28_09345 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D C1O28_09335 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D C1O28_09330 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D C1O28_09340 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D C1O28_14105 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein
D C1O28_02465 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D C1O28_02460 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D C1O28_02455 pstA; phosphate ABC transporter permease PtsA K02038 pstA; phosphate transport system permease protein
D C1O28_02450 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D C1O28_04305 ABC transporter substrate-binding protein K10005 gluB; glutamate transport system substrate-binding protein
D C1O28_04310 amino acid ABC transporter permease K10006 gluC; glutamate transport system permease protein
D C1O28_04315 amino acid ABC transporter permease K10007 gluD; glutamate transport system permease protein
D C1O28_04300 amino acid ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D C1O28_01515 polar amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D C1O28_01520 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein
D C1O28_01525 glnQ; amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D C1O28_01920 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D C1O28_01995 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D C1O28_01990 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D C1O28_01985 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D C1O28_01980 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D C1O28_14480 methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D C1O28_14470 ABC transporter permease K02072 metI; D-methionine transport system permease protein
D C1O28_14475 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D C1O28_01005 transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D C1O28_08485 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D C1O28_08480 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D C1O28_08475 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D C1O28_08470 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D C1O28_11635 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D C1O28_13145 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D C1O28_07230 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D C1O28_11630 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D C1O28_13160 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D C1O28_07225 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D C1O28_11625 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D C1O28_13165 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D C1O28_07220 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D C1O28_11620 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D C1O28_13170 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D C1O28_07215 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D C1O28_04505 ABC transporter substrate-binding protein K25287 desE; iron-desferrioxamine transport system substrate-binding protein
D C1O28_11995 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D C1O28_12000 iron ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein
D C1O28_12005 ABC transporter permease K23187 fepG; iron-siderophore transport system permease protein
D C1O28_04520 iron ABC transporter permease K23187 fepG; iron-siderophore transport system permease protein
D C1O28_12010 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D C1O28_04525 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D C1O28_14145 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D C1O28_14150 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein
D C1O28_05715 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D C1O28_14155 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D C1O28_05665 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component
D C1O28_06545 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D C1O28_06550 ABC transporter ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D C1O28_06555 hypothetical protein K16925 ykoE; energy-coupling factor transport system permease protein
D C1O28_14820 ABC transporter substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D C1O28_14830 metal ABC transporter permease K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D C1O28_14825 ABC transporter ATP-binding protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D C1O28_08835 ABC transporter K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D C1O28_03645 ABC transporter permease K09811 ftsX; cell division transport system permease protein
D C1O28_03640 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D C1O28_04645 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D C1O28_11585 transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D C1O28_09145 sugar ABC transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D C1O28_09645 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D C1O28_03570 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D C1O28_03585 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D C1O28_03805 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D C1O28_00915 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D C1O28_11005 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D C1O28_04640 multidrug ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D C1O28_03580 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D C1O28_10495 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D C1O28_11010 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D C1O28_11590 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D C1O28_09150 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D C1O28_09640 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D C1O28_03810 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D C1O28_03565 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D C1O28_03800 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D C1O28_02785 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D C1O28_00910 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D C1O28_08830 lipoprotein ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D C1O28_13035 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D C1O28_13055 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D C1O28_12750 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D C1O28_14650 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D C1O28_00735 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D C1O28_13050 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D C1O28_12755 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D C1O28_14645 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D C1O28_00730 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D C1O28_05655 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D C1O28_13250 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D C1O28_06730 MFS transporter K08139 HXT; MFS transporter, SP family, sugar:H+ symporter
D C1O28_14275 MFS transporter K06609 iolT; MFS transporter, SP family, major inositol transporter
D C1O28_12265 MFS transporter K08173 ydfJ; MFS transporter, MHS family, metabolite:H+ symporter
D C1O28_05105 MFS transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D C1O28_12565 hypothetical protein K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D C1O28_11685 MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D C1O28_08850 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D C1O28_03825 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D C1O28_08540 MFS transporter K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D C1O28_11555 MFS transporter K18833 cmr; MFS transporter, DHA3 family, multidrug efflux protein
D C1O28_00190 MFS transporter K08221 yitG; MFS transporter, ACDE family, multidrug resistance protein
D C1O28_11205 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D C1O28_00495 MFS transporter K06902 UMF1; MFS transporter, UMF1 family
D C1O28_01705 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D C1O28_01700 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D C1O28_03210 PTS fructose transporter subunit IIA K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D C1O28_03200 PTS fructose transporter subunit IIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D C1O28_01715 PTS mannitol transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D C1O28_01710 PTS mannitol transporter subunit IICBA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D C1O28_01695 hypothetical protein K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D C1O28_09310 PTS ascorbate transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D C1O28_09305 PTS ascorbate transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D C1O28_05015 hypothetical protein K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D C1O28_03160 aquaporin family protein K02440 glpF; glycerol uptake facilitator
D C1O28_07645 ion transporter K10716 kch; voltage-gated potassium channel
D C1O28_05985 ammonium transporter K03320 amt; ammonium transporter, Amt family
D C1O28_02945 mscL; large conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel
D C1O28_06445 mechanosensitive ion channel family protein K22044 ybiO; moderate conductance mechanosensitive channel
D C1O28_08895 corA; magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D C1O28_07860 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D C1O28_14365 CrcB family protein K06199 crcB; fluoride exporter
D C1O28_14370 CrcB family protein K06199 crcB; fluoride exporter
D C1O28_12110 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D C1O28_08885 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D C1O28_08890 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D C1O28_07300 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D C1O28_05095 amino acid permease K11738 ansP; L-asparagine permease
D C1O28_14130 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D C1O28_01055 ZIP family zinc transporter K07238 TC.ZIP; zinc transporter, ZIP family
D C1O28_01125 EamA family transporter K11939 rhtA; inner membrane transporter RhtA
D C1O28_01915 rarD; EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D C1O28_04675 gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D C1O28_14410 hypothetical protein K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D C1O28_00115 GntP family transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D C1O28_00830 C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein
D C1O28_14330 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D C1O28_12190 sodium:proton antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D C1O28_06690 sodium:proton antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D C1O28_02015 hypothetical protein K07228 khtT; K+:H+ antiporter subunit KhtT
D C1O28_02020 cation:proton antiporter K26732 khtU; K+:H+ antiporter subunit KhtU
D C1O28_10800 potassium transporter Trk K03498 trkH; trk/ktr system potassium uptake protein
D C1O28_10805 TrkA family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein
D C1O28_06335 benzoate transporter K05782 benE; benzoate membrane transport protein
D C1O28_10225 divalent metal cation transporter MntH K03322 mntH; manganese transport protein
D C1O28_03715 arsenic transporter K03893 arsB; arsenical pump membrane protein
D C1O28_10590 Na+/H+ antiporter subunit A K05565 mnhA; multicomponent Na+:H+ antiporter subunit A
D C1O28_10595 Na(+)/H(+) antiporter subunit C K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D C1O28_10600 Na+/H+ antiporter subunit D K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D C1O28_10605 Na+/H+ antiporter subunit E K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D C1O28_10610 sodium:proton antiporter K05570 mnhF; multicomponent Na+:H+ antiporter subunit F
D C1O28_10615 Na+/H+ antiporter subunit G K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D C1O28_08190 colanic acid exporter K16695 wzxC; lipopolysaccharide exporter
D C1O28_13630 mviN; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D C1O28_00135 amino acid transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO
D C1O28_01745 threonine transporter RhtB K05834 rhtB; homoserine/homoserine lactone efflux protein
D C1O28_00275 AI-2E family transporter K20469 K20469; putative heme transporter
D C1O28_08725 AI-2E family transporter K20469 K20469; putative heme transporter
D C1O28_04875 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D C1O28_08445 high-affinity Fe2+/Pb2+ permease K07243 FTR; high-affinity iron transporter
D C1O28_08450 peptidase M75 family protein K07224 efeO; iron uptake system component EfeO
D C1O28_08455 deferrochelatase/peroxidase EfeB K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-]
D C1O28_10755 cytochrome C biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein
D C1O28_12345 cytochrome C biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein
D C1O28_09815 lipopolysaccharide biosynthesis protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D C1O28_13100 hypothetical protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D C1O28_10065 nicotinamide riboside transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter
D C1O28_01060 UPF0104 family protein K20468 K20468; putative heme transporter
D C1O28_06940 uraH; hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D C1O28_00900 copper resistance protein CopC K07156 copC; copper resistance protein C
D C1O28_13105 O-antigen ligase domain-containing protein K18814 ictB; putative inorganic carbon (hco3(-)) transporter
C 02044 Secretion system [BR:rry02044]
D C1O28_08660 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D C1O28_09770 hypothetical protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D C1O28_04910 YggT family protein K02221 yggT; YggT family protein
D C1O28_07395 ComEA family DNA-binding protein K02237 comEA; competence protein ComEA
D C1O28_07390 hypothetical protein K02238 comEC; competence protein ComEC
D C1O28_09000 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D C1O28_05170 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D C1O28_10480 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D C1O28_05175 protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D C1O28_05590 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D C1O28_01675 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D C1O28_06840 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D C1O28_06855 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D C1O28_05165 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D C1O28_13585 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D C1O28_05895 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA
D C1O28_08395 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D C1O28_05900 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:rry02042]
D C1O28_12110 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D C1O28_08885 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D C1O28_08890 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D C1O28_07300 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D C1O28_08695 hemolysin III K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:rry02022]
D C1O28_02525 two-component sensor histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D C1O28_02530 DNA-binding response regulator K07776 regX3; two-component system, OmpR family, response regulator RegX3
D C1O28_13340 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D C1O28_13335 DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D C1O28_09020 sensor histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D C1O28_09025 DNA-binding response regulator K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D C1O28_00065 sensor histidine kinase K18351 vanSAc; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D C1O28_00070 DNA-binding response regulator K18352 vanRAc; two-component system, OmpR family, response regulator VanR
D C1O28_10370 HAMP domain-containing protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D C1O28_02680 HAMP domain-containing protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D C1O28_12090 sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D C1O28_08370 sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D C1O28_10375 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator
D C1O28_02685 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator
D C1O28_12085 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator
D C1O28_01505 DNA-binding response regulator K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D C1O28_08820 DNA-binding response regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D C1O28_00825 sensor histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]
D C1O28_01175 sensor histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]
D C1O28_08990 ATPase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
D C1O28_05510 ANTAR domain-containing protein K22010 pdtaR; two-component system, response regulator PdtaR
C 02035 Bacterial motility proteins [BR:rry02035]
D C1O28_01515 polar amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D C1O28_08660 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D C1O28_09770 hypothetical protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:rry04812]
D C1O28_04895 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D C1O28_13600 ParA family protein K03496 parA; chromosome partitioning protein
D C1O28_04430 ParA family protein K03496 parA; chromosome partitioning protein
D C1O28_04775 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D C1O28_11845 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D C1O28_13605 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:rry04147]
D C1O28_03265 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D C1O28_05575 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D C1O28_05580 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D C1O28_05445 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D C1O28_13455 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D C1O28_03965 flotillin family protein K07192 FLOT; flotillin
D C1O28_02675 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D C1O28_00525 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D C1O28_05615 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D C1O28_14425 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D C1O28_02000 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D C1O28_02005 GuaB3 family IMP dehydrogenase-related protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D C1O28_01555 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D C1O28_07315 HIT domain-containing protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D C1O28_06590 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_04795 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_02075 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_03045 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D C1O28_03035 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D C1O28_05480 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D C1O28_01680 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D C1O28_03260 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D C1O28_04355 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D C1O28_04605 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D C1O28_02275 dimethylarginine dimethylaminohydrolase K01482 DDAH; dimethylargininase [EC:3.5.3.18]
D C1O28_07035 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D C1O28_02355 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D C1O28_06660 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D C1O28_03165 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D C1O28_06145 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C1O28_06185 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D C1O28_00625 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D C1O28_03780 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D C1O28_02270 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D C1O28_06120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_12900 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D C1O28_05610 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D C1O28_04750 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D C1O28_13740 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D C1O28_03700 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D C1O28_05585 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D C1O28_02515 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:rry02048]
D C1O28_08355 restriction endonuclease K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D C1O28_14590 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D C1O28_02415 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D C1O28_08680 Txe/YoeB family addiction module toxin K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D C1O28_08625 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D C1O28_10565 hypothetical protein K07341 doc; death on curing protein
D C1O28_01115 type II toxin-antitoxin system Phd/YefM family antitoxin K19165 phd; antitoxin Phd
D C1O28_04895 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D C1O28_03920 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D C1O28_08535 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D C1O28_06635 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:rry01504]
D C1O28_11555 MFS transporter K18833 cmr; MFS transporter, DHA3 family, multidrug efflux protein
D C1O28_03440 macrolide 2'-phosphotransferase K06979 mph; macrolide phosphotransferase
D C1O28_09580 chloramphenicol phosphotransferase K18554 cpt; chloramphenicol 3-O phosphotransferase [EC:2.7.1.-]
D C1O28_03825 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D C1O28_12990 serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D C1O28_01235 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D C1O28_00065 sensor histidine kinase K18351 vanSAc; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D C1O28_00070 DNA-binding response regulator K18352 vanRAc; two-component system, OmpR family, response regulator VanR
D C1O28_06570 hypothetical protein K18353 vanJ; vancomycin resistance protein VanJ
D C1O28_00085 lactate dehydrogenase K18347 vanH; D-specific alpha-keto acid dehydrogenase [EC:1.1.1.-]
D C1O28_00080 vanA; D-alanine--(R)-lactate ligase K15739 vanB; D-alanine---(R)-lactate ligase [EC:6.1.2.1]
D C1O28_00075 D-Ala-D-Ala dipeptidase VanX K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D C1O28_09250 DUF2156 domain-containing protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:rry03100]
D C1O28_02975 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D C1O28_06230 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D C1O28_13520 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D C1O28_11290 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D C1O28_02795 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D C1O28_06510 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D C1O28_08330 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D C1O28_07205 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D C1O28_11500 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D C1O28_05075 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D C1O28_03930 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D C1O28_09445 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D C1O28_07790 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D C1O28_11495 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D C1O28_00450 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D C1O28_05070 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D C1O28_06365 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D C1O28_06530 tRNA-His K14226 tRNA-His; tRNA His
D C1O28_13525 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D C1O28_03625 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C1O28_05505 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C1O28_05840 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C1O28_13385 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C1O28_03285 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D C1O28_02425 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D C1O28_03680 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D C1O28_03480 tRNA-Met K14230 tRNA-Met; tRNA Met
D C1O28_07175 tRNA-Met K14230 tRNA-Met; tRNA Met
D C1O28_10570 tRNA-Met K14230 tRNA-Met; tRNA Met
D C1O28_11505 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D C1O28_04470 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D C1O28_06360 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D C1O28_09795 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D C1O28_09895 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D C1O28_01395 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D C1O28_11315 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D C1O28_02645 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D C1O28_09710 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D C1O28_10575 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D C1O28_10485 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D C1O28_10640 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D C1O28_05065 tRNA-Val K14237 tRNA-Val; tRNA Val
D C1O28_05080 tRNA-Val K14237 tRNA-Val; tRNA Val
D C1O28_07075 tRNA-Val K14237 tRNA-Val; tRNA Val
D C1O28_04380 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D C1O28_12485 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D C1O28_04385 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D C1O28_12480 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D C1O28_04390 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D C1O28_12475 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D C1O28_09890 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA
D C1O28_06205 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
D C1O28_03660 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D C1O28_14455 KR domain-containing protein K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D C1O28_14460 L-idonate 5-dehydrogenase K00098 idnD; L-idonate 5-dehydrogenase [EC:1.1.1.264]
D C1O28_11545 S-(hydroxymethyl)mycothiol dehydrogenase K00153 E1.1.1.306; S-(hydroxymethyl)mycothiol dehydrogenase [EC:1.1.1.306]
D C1O28_10340 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D C1O28_09565 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D C1O28_10930 nucleoside-diphosphate sugar epimerase K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412]
D C1O28_06495 aldo/keto reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D C1O28_02860 fgd; glucose-6-phosphate dehydrogenase (coenzyme-F420) K15510 fgd1; coenzyme F420-dependent glucose-6-phosphate dehydrogenase [EC:1.1.98.2]
D C1O28_03070 nitroreductase family deazaflavin-dependent oxidoreductase K00540 fqr; F420H(2)-dependent quinone reductase [EC:1.1.98.-]
D C1O28_08975 aldo/keto reductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D C1O28_14260 NADP oxidoreductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D C1O28_00505 NADP oxidoreductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D C1O28_09290 NAD(P)H-quinone dehydrogenase K23842 lpdA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D C1O28_12695 NADPH:quinone reductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D C1O28_04785 mycothione reductase K17883 mtr; mycothione reductase [EC:1.8.1.15]
D C1O28_06490 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D C1O28_02655 msrB; peptide-methionine (R)-S-oxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D C1O28_09400 glutathione-dependent reductase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D C1O28_11170 catalase K07217 ydbD; manganese catalase [EC:1.11.1.6]
D C1O28_12650 manganese catalase K07217 ydbD; manganese catalase [EC:1.11.1.6]
D C1O28_14005 alpha/beta hydrolase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10]
D C1O28_08930 thioredoxin-dependent thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D C1O28_14240 OsmC family peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D C1O28_12630 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D C1O28_07080 peroxiredoxin K24120 ahpE; mycoredoxin-dependent peroxiredoxin [EC:1.11.1.29]
D C1O28_11360 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D C1O28_01960 taurine catabolism dioxygenase TauD K18058 asnO; L-asparagine oxygenase [EC:1.14.11.39]
D C1O28_04485 L-lysine 6-monooxygenase K10531 pvdA; L-ornithine N5-monooxygenase [EC:1.14.13.195 1.14.13.196]
D C1O28_11530 FMN-dependent monooxygenase K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28]
D C1O28_14245 FMN-dependent monooxygenase K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28]
D C1O28_10665 pyridine nucleotide-disulfide oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D C1O28_14335 arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D C1O28_02480 mshD; mycothiol synthase K15520 mshD; mycothiol synthase [EC:2.3.1.189]
D C1O28_05910 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D C1O28_14200 GNAT family N-acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D C1O28_10910 glycosyltransferase family 1 protein K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250]
D C1O28_05430 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D C1O28_08870 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D C1O28_06180 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D C1O28_06765 cutinase family protein K08095 CUT1_2_3; cutinase [EC:3.1.1.74]
D C1O28_11990 carboxylesterase/lipase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D C1O28_06465 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D C1O28_03400 PHP domain-containing protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D C1O28_09475 TatD family deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D C1O28_13270 endonuclease NucS K07503 nucS; endonuclease [EC:3.1.-.-]
D C1O28_13155 DUF2961 domain-containing protein K27494 exoMA1; D-arabinan exo alpha-(1,3)/(1,5)-arabinofuranosidase (non-reducing end) [EC:3.2.1.225]
D C1O28_00425 hypothetical protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D C1O28_04790 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D C1O28_07190 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D C1O28_08440 mycothiol biosynthesis protein K15525 mshB; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase [EC:3.5.1.103]
D C1O28_08705 mca; mycothiol conjugate amidase Mca K18455 mca; mycothiol S-conjugate amidase [EC:3.5.1.115]
D C1O28_03500 hydrolase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D C1O28_06910 8-oxoguanine deaminase K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32]
D C1O28_09045 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D C1O28_07725 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D C1O28_10935 hydrolase K25044 oleBC; cis-3-alkyl-4-acyloxetan-2-one decarboxylase / olefin beta-lactone synthetase [EC:4.1.1.114 6.1.3.1]
D C1O28_08880 NAD(P)H-hydrate dehydratase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D C1O28_04665 NAD(P)H-hydrate epimerase K17759 NAXE; NAD(P)H-hydrate epimerase [EC:5.1.99.6]
D C1O28_05855 cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase K15526 mshC; L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [EC:6.3.1.13]
C 99981 Carbohydrate metabolism
D C1O28_14055 glycosyl hydrolase K17641 bxlA; beta-xylosidase
C 99982 Energy metabolism
D C1O28_09875 hypothetical protein K02379 fdhD; FdhD protein
D C1O28_06955 hypothetical protein K04488 iscU; nitrogen fixation protein NifU and related proteins
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
D C1O28_10165 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI K03647 nrdI; protein involved in ribonucleotide reduction
C 99985 Amino acid metabolism
D C1O28_10545 hypothetical protein K06203 cysZ; CysZ protein
D C1O28_14405 hypothetical protein K08234 yaeR; glyoxylase I family protein
D C1O28_13820 VOC family protein K08234 yaeR; glyoxylase I family protein
D C1O28_04900 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein
D C1O28_12745 N-acetyltransferase K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D C1O28_09105 exopolysaccharide production protein K16567 exoQ; exopolysaccharide production protein ExoQ
D C1O28_09110 exopolysaccharide production protein K16567 exoQ; exopolysaccharide production protein ExoQ
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
C 99999 Others
D C1O28_04580 DoxX family protein K15977 K15977; putative oxidoreductase
D C1O28_01415 phospholipase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D C1O28_00270 cold-shock protein K03704 cspA; cold shock protein
D C1O28_02670 cold-shock protein K03704 cspA; cold shock protein
D C1O28_02695 cold shock domain-containing protein K03704 cspA; cold shock protein
C 99974 Translation
C 99975 Protein processing
D C1O28_12970 ATP-dependent Clp protease adapter ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D C1O28_06355 trigger factor K03545 tig; trigger factor
D C1O28_03650 SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein
D C1O28_10170 glutaredoxin-like protein NrdH K06191 nrdH; glutaredoxin-like protein NrdH
D C1O28_06755 ATP-binding protein K07391 comM; magnesium chelatase family protein
D C1O28_10750 cytochrome c biogenesis protein ResB K07399 resB; cytochrome c biogenesis protein
D C1O28_06915 XshC-Cox1-family protein K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D C1O28_12950 DNA repair protein K03630 radC; DNA repair protein RadC
D C1O28_08600 DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D C1O28_06760 YraN family protein K07460 yraN; putative endonuclease
D C1O28_06750 dprA; DNA-protecting protein DprA K04096 smf; DNA processing protein
D C1O28_05205 replication-associated recombination protein A K07478 ycaJ; putative ATPase
D C1O28_10995 hypothetical protein K07483 K07483; transposase
D C1O28_07640 transposase K07483 K07483; transposase
D C1O28_02245 transposase K07483 K07483; transposase
D C1O28_02535 hypothetical protein K07497 K07497; putative transposase
D C1O28_11905 hypothetical protein K07497 K07497; putative transposase
D C1O28_11910 hypothetical protein K07497 K07497; putative transposase
D C1O28_07630 hypothetical protein K07497 K07497; putative transposase
D C1O28_07635 hypothetical protein K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D C1O28_01145 PspA/IM30 family protein K03969 pspA; phage shock protein A
D C1O28_00970 restriction endonuclease K07504 K07504; predicted type IV restriction endonuclease
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D C1O28_04550 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D C1O28_01170 citrate:proton symporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family
D C1O28_13980 inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D C1O28_02880 allantoin permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D C1O28_10535 hypothetical protein K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
C 99978 Cell growth
D C1O28_13590 DNA-binding protein K06346 jag; spoIIIJ-associated protein
C 99993 Cell motility
C 99995 Signaling proteins
D C1O28_08465 typA; translational GTPase TypA K06207 typA; GTP-binding protein
D C1O28_07310 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D C1O28_08670 PhoH family protein K07175 phoH2; PhoH-like ATPase
D C1O28_10650 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
C 99994 Others
D C1O28_02520 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D C1O28_12175 PHP domain-containing protein K04477 ycdX; putative hydrolase
D C1O28_06450 globin K06886 glbN; hemoglobin
D C1O28_12610 transporter K06994 K06994; putative drug exporter of the RND superfamily
D C1O28_07050 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D C1O28_03185 HAD family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D C1O28_12575 HAD family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D C1O28_05640 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D C1O28_05645 sufD; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D C1O28_05100 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein
D C1O28_03225 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein
D C1O28_06000 SufE family protein K02426 sufE; cysteine desulfuration protein SufE
D C1O28_02865 VOC family protein K04750 phnB; PhnB protein
D C1O28_08765 LemA family protein K03744 lemA; LemA protein
D C1O28_03620 hypothetical protein K03975 dedA; membrane-associated protein
D C1O28_07530 DedA family protein K03975 dedA; membrane-associated protein
D C1O28_02260 esaA; type VII secretion protein EsaA K01421 yhgE; putative membrane protein
D C1O28_11450 YhgE/Pip domain-containing protein K01421 yhgE; putative membrane protein
D C1O28_12615 YhgE/Pip domain-containing protein K01421 yhgE; putative membrane protein
D C1O28_14765 hypothetical protein K08972 K08972; putative membrane protein
D C1O28_11410 hypothetical protein K08981 K08981; putative membrane protein
D C1O28_04595 DUF1304 domain-containing protein K08987 K08987; putative membrane protein
D C1O28_04655 zinc chelation protein SecC K09858 K09858; SEC-C motif domain protein
C 99997 Function unknown
D C1O28_09540 thioredoxin domain-containing protein K06888 K06888; uncharacterized protein
D C1O28_09505 CoA-binding protein K06929 K06929; uncharacterized protein
D C1O28_06810 RNA-binding protein K06960 K06960; uncharacterized protein
D C1O28_10280 N-acetyltransferase K06975 K06975; uncharacterized protein
D C1O28_04660 N-acetyltransferase K06975 K06975; uncharacterized protein
D C1O28_01200 N-acetyltransferase K06975 K06975; uncharacterized protein
D C1O28_00330 PPOX class F420-dependent oxidoreductase K07006 K07006; uncharacterized protein
D C1O28_06680 alpha/beta hydrolase K07018 K07018; uncharacterized protein
D C1O28_10970 hypothetical protein K07032 K07032; uncharacterized protein
D C1O28_00715 glyoxalase K07032 K07032; uncharacterized protein
D C1O28_14565 hydrolase TatD K07051 K07051; uncharacterized protein
D C1O28_12295 DUF1731 domain-containing protein K07071 K07071; uncharacterized protein
D C1O28_04135 TIGR01777 family protein K07071 K07071; uncharacterized protein
D C1O28_10145 XRE family transcriptional regulator K07075 K07075; uncharacterized protein
D C1O28_14210 hypothetical protein K07089 K07089; uncharacterized protein
D C1O28_00180 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D C1O28_01165 hypothetical protein K07090 K07090; uncharacterized protein
D C1O28_13070 PhoX family phosphatase K07093 K07093; uncharacterized protein
D C1O28_11070 YfcE family phosphodiesterase K07095 K07095; uncharacterized protein
D C1O28_09790 metallophosphoesterase K07098 K07098; uncharacterized protein
D C1O28_08785 phosphoribosyltransferase K07101 K07101; uncharacterized protein
D C1O28_10770 KR domain-containing protein K07124 K07124; uncharacterized protein
D C1O28_10045 MOSC domain-containing protein K07140 K07140; MOSC domain-containing protein
D C1O28_07155 peptidase S16 K07157 K07157; uncharacterized protein
D C1O28_06210 hypothetical protein K07164 K07164; uncharacterized protein
D C1O28_13580 membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein
D C1O28_03275 DUF501 domain-containing protein K09009 K09009; uncharacterized protein
D C1O28_03470 UPF0182 family protein K09118 K09118; uncharacterized protein
D C1O28_04020 DUF1684 domain-containing protein K09164 K09164; uncharacterized protein
D C1O28_01435 DUF1684 domain-containing protein K09164 K09164; uncharacterized protein
D C1O28_00975 DUF2071 domain-containing protein K09166 K09166; uncharacterized protein
D C1O28_11415 hypothetical protein K09167 K09167; uncharacterized protein
D C1O28_14125 DUF808 domain-containing protein K09781 K09781; uncharacterized protein
D C1O28_05825 DUF541 domain-containing protein K09807 K09807; uncharacterized protein
D C1O28_08125 peroxide stress protein YaaA K09861 K09861; uncharacterized protein
D C1O28_08750 winged helix-turn-helix domain-containing protein K09927 K09927; uncharacterized protein
D C1O28_07335 DUF4870 domain-containing protein K09940 K09940; uncharacterized protein
D C1O28_11690 hypothetical protein K09955 K09955; uncharacterized protein
D C1O28_11970 hypothetical protein K09992 K09992; uncharacterized protein
D C1O28_08010 DUF448 domain-containing protein K07742 ylxR; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 19, 2024