+F Repair protein KO
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DNA Repair and Recombination Proteins - Ralstonia solanacearum PSI07
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D RPSI07_0923 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RPSI07_0960 ogt; Methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E RPSI07_0617 ung; uracil-DNA-glycosylase (UDG) K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E RPSI07_3005 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E RPSI07_2389 nth; endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on 5-formyluracil and 5-hydroxymethyluracil K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D RPSI07_0676 mutT; Mutator mutT protein (7, 8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RPSI07_1011 dut; deoxyuridinetriphosphatase (dUTP diphosphatase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D RPSI07_0923 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RPSI07_0960 ogt; Methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RPSI07_0897 ada; fused DNA-binding transcriptional dual regulator; O6-methylguanine-DNA methyltransferase; (AraC/Xyl family) (N-terminal); bifunctional K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RPSI07_0899 alkB; Alpha-ketoglutarate-dependent dioxygenase alkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E RPSI07_0617 ung; uracil-DNA-glycosylase (UDG) K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E RPSI07_1998 ung; uracil-DNA glycosylase,phage-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E RPSI07_0898 alkA; na-3-methyladenine glycosylase protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E RPSI07_2209 putative DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E RPSI07_0961 Putative regulatory protein ada (Regulatory protein of adaptative response) [Includes: Methylated-DNA--protein-cysteine methyltransferase (O-6-methylguanine-DNA alkyltransferase)] K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E RPSI07_3005 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E RPSI07_mp0564 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E RPSI07_3007 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E RPSI07_2389 nth; endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on 5-formyluracil and 5-hydroxymethyluracil K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E RPSI07_1683 xthA; EXODEOXYRIBONUCLEASE III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
E RPSI07_3241 putative exodeoxyribonuclease III/endonuclease/phosphatase K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E RPSI07_2261 recJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E RPSI07_1964 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E RPSI07_1192 polA; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E RPSI07_2985 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A
E RPSI07_mp0979 uvrA; Excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E RPSI07_2384 uvrB; ATP-dependent DNA excision repair enzyme, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
E RPSI07_2321 uvrC; UvrABC system protein C (Excinuclease ABC subunit C) K03703 uvrC; excinuclease ABC subunit C
E RPSI07_1187 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RPSI07_mp1314 putative atp-dependent dna helicase II protein (uvrD) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RPSI07_mp1649 putative DNA helicase, DNA helicase UvrD/REP type domain K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RPSI07_1192 polA; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7]
E RPSI07_1964 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F RPSI07_0463 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F RPSI07_0464 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F RPSI07_0505 rpoA; RNA polymerase, alpha subunit; RNA polymerase alpha chain family K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F RPSI07_1270 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F RPSI07_1735 mfd; transcription-repair ATP-dependent coupling factor, helicase K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E RPSI07_2224 mutS; methyl-directed DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E RPSI07_0904 mutL; methyl-directed mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E RPSI07_0362 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E RPSI07_0938 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E RPSI07_1199 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E RPSI07_1218 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E RPSI07_0002 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E RPSI07_1060 holC; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E RPSI07_0768 holA; DNA-directed DNA polymerase, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E RPSI07_1824 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E RPSI07_1521 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E RPSI07_2186 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E RPSI07_1964 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E RPSI07_1187 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RPSI07_mp1314 putative atp-dependent dna helicase II protein (uvrD) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RPSI07_mp1649 putative DNA helicase, DNA helicase UvrD/REP type domain K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RPSI07_2983 ssb; ssDNA-binding protein, controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E RPSI07_2805 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
E RPSI07_2865 ruvA; subunit A of RuvABC Holliday junction resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA
E RPSI07_2866 ruvB; ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E RPSI07_2861 ruvC; endodeoxyribonuclease, subunit C of RuvABC Holliday junction resolvasome K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E RPSI07_0141 priA; Primosome factor n' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E RPSI07_2059 putative rimosomal replication protein N (priB) K02686 priB; primosomal replication protein N
E RPSI07_0362 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D RecFOR pathway proteins
E RPSI07_2805 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
E RPSI07_1995 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms
E RPSI07_0800 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E RPSI07_2261 recJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E RPSI07_2327 recO; DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O)
E RPSI07_2183 recR; Recombination protein recR K06187 recR; recombination protein RecR
E RPSI07_0866 recN; DNA repair protein recN (Recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N)
E RPSI07_2735 rdgC; Recombination associated protein K03554 rdgC; recombination associated protein RdgC
E RPSI07_2865 ruvA; subunit A of RuvABC Holliday junction resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA
E RPSI07_2866 ruvB; ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E RPSI07_2861 ruvC; endodeoxyribonuclease, subunit C of RuvABC Holliday junction resolvasome K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E RPSI07_2187 putative helicase, uvrD subfamily K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E RPSI07_2188 putative helicase, C_term RecB family exonuclease K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E RPSI07_1234 putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E RPSI07_2771 ATP-dependent DNA helicase, Ku domain K10979 ku; DNA end-binding protein Ku
E RPSI07_2772 ATP dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F RPSI07_2483 gyrA; DNA gyrase, subunit A, type II topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F RPSI07_0003 gyrB; DNA gyrase, subunit B (type II topoisomerase) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
F RPSI07_0083 hupB; DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation K03530 hupB; DNA-binding protein HU-beta
F RPSI07_0944 hupB; DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation K03530 hupB; DNA-binding protein HU-beta
F RPSI07_1757 hupB; DNA-binding protein HU-beta, transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F RPSI07_2261 recJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F RPSI07_2327 recO; DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O)
F RPSI07_2183 recR; Recombination protein recR K06187 recR; recombination protein RecR
F RPSI07_1964 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F RPSI07_2859 putative transcriptional regulator, FIS family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F RPSI07_1671 ihfA; integration host factor (IHF), alpha subunit K04764 ihfA; integration host factor subunit alpha
F RPSI07_2474 ihfB; Integration host factor subunit beta (IHF-beta) K05788 ihfB; integration host factor subunit beta
E Supressor
F RPSI07_0362 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F RPSI07_0472 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F RPSI07_2985 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A
F RPSI07_mp0979 uvrA; Excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F RPSI07_2384 uvrB; ATP-dependent DNA excision repair enzyme, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
F RPSI07_0251 Histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
F RPSI07_mp0043 Histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
F RPSI07_mp0308 Histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
F RPSI07_mp1064 conserved hypothethical protein, H-NS histone-like proteins domain K03746 hns; DNA-binding protein H-NS
F RPSI07_mp1139 Histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D RPSI07_1677 dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D RPSI07_2805 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D RPSI07_2063 lexA; transcriptional lexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D RPSI07_0866 recN; DNA repair protein recN (Recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N)
D RPSI07_mp0733 imuA; DNA damage-inducible mutagenesis protein K14160 imuA; protein ImuA
D RPSI07_mp0734 imuB; required for the error-prone processing of DNA lesions along with dnaE2 and imuA K14161 imuB; protein ImuB
D RPSI07_mp0735 dnaE; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D RPSI07_2983 ssb; ssDNA-binding protein, controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein
D RPSI07_2804 recX; recombination regulator RecX (Modulates recA activity) K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D RPSI07_0155 rep; ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D RPSI07_2953 putative ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D RPSI07_1719 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D RPSI07_0676 mutT; Mutator mutT protein (7, 8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RPSI07_1011 dut; deoxyuridinetriphosphatase (dUTP diphosphatase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RPSI07_0702 nrdA; Ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RPSI07_0703 nrdB; ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 29, 2025