+F Repair protein KO #

  DNA Repair and Recombination Proteins - Ralstonia solanacearum CMR15

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CMR15_10872 ogt; Methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CMR15_10817 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E CMR15_10527 ung; uracil-DNA-glycosylase (UDG) K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CMR15_30505 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CMR15_20120 nth; endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on 5-formyluracil and 5-hydroxymethyluracil K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D CMR15_10584 mutT; Mutator mutT protein (7, 8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CMR15_mp20067 putative thiamine-phosphate pyrophosphorylase (thiE) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CMR15_10914 dut; deoxyuridinetriphosphatase (dUTP diphosphatase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CMR15_10872 ogt; Methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CMR15_10817 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CMR15_10790 ada; fused DNA-binding transcriptional dual regulator; O6-methylguanine-DNA methyltransferase; (AraC/Xyl family) (N-terminal); bifunctional K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D CMR15_10792 alkB; Alpha-ketoglutarate-dependent dioxygenase alkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E CMR15_10527 ung; uracil-DNA-glycosylase (UDG) K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CMR15_20579 ung; uracil-DNA glycosylase,phage-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CMR15_10791 alkA; na-3-methyladenine glycosylase protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E CMR15_20374 putative DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E CMR15_10873 Putative regulatory protein ada (Regulatory protein of adaptative response) [Includes: Methylated-DNA--protein-cysteine methyltransferase (O-6-methylguanine-DNA alkyltransferase)] K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E CMR15_30505 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CMR15_mp10634 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E CMR15_30507 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E CMR15_20120 nth; endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on 5-formyluracil and 5-hydroxymethyluracil K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CMR15_11591 xthA; EXODEOXYRIBONUCLEASE III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E CMR15_30768 putative exodeoxyribonuclease III/endonuclease/phosphatase K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E CMR15_20319 recJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E CMR15_20609 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E CMR15_11146 polA; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E CMR15_30486 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A E CMR15_mp20075 uvrA; Excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E CMR15_20126 uvrB; ATP-dependent DNA excision repair enzyme, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B E CMR15_20189 uvrC; UvrABC system protein C (Excinuclease ABC subunit C) K03703 uvrC; excinuclease ABC subunit C E CMR15_11141 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CMR15_mp20379 putative atp-dependent dna helicase II protein (uvrD) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CMR15_11146 polA; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7] E CMR15_20609 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F CMR15_10360 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F CMR15_10361 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CMR15_10401 rpoA; RNA polymerase, alpha subunit; RNA polymerase alpha chain family K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F CMR15_11230 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F CMR15_11644 mfd; transcription-repair ATP-dependent coupling factor, helicase K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E CMR15_20356 mutS; methyl-directed DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E CMR15_10797 mutL; methyl-directed mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E CMR15_10275 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E CMR15_10846 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E CMR15_11173 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E CMR15_10002 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CMR15_10965 holC; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E CMR15_10671 holA; DNA-directed DNA polymerase, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E CMR15_11789 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E CMR15_11454 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CMR15_20397 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E CMR15_20609 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E CMR15_11141 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CMR15_mp20379 putative atp-dependent dna helicase II protein (uvrD) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CMR15_30484 ssb; ssDNA-binding protein, controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein E CMR15_p0023 vsr; DNA mismatch endonuclease of very short patch repair K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E CMR15_30576 protein of unknown function, P-loop containing nucleoside triphosphate hydrolases K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E CMR15_30349 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E CMR15_30403 ruvA; subunit A of RuvABC Holliday junction resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA E CMR15_30404 ruvB; ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CMR15_30401 ruvC; endodeoxyribonuclease, subunit C of RuvABC Holliday junction resolvasome K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E CMR15_10164 priA; Primosome factor n' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E CMR15_20516 putative rimosomal replication protein N (priB) K02686 priB; primosomal replication protein N E CMR15_10275 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RecFOR pathway proteins E CMR15_30349 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E CMR15_20582 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E CMR15_10705 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CMR15_20319 recJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CMR15_20183 recO; DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) E CMR15_20399 recR; Recombination protein recR K06187 recR; recombination protein RecR E CMR15_10761 recN; DNA repair protein recN (Recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N) E CMR15_30278 rdgC; Recombination associated protein K03554 rdgC; recombination associated protein RdgC E CMR15_30403 ruvA; subunit A of RuvABC Holliday junction resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA E CMR15_30404 ruvB; ATP-dependent DNA helicase, subunit B of RuvABC Holliday junction resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CMR15_30401 ruvC; endodeoxyribonuclease, subunit C of RuvABC Holliday junction resolvasome K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E CMR15_20396 putative helicase, uvrD subfamily K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E CMR15_20395 putative helicase, C_term RecB family exonuclease K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E CMR15_11190 putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F CMR15_20018 gyrA; DNA gyrase, subunit A, type II topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CMR15_10003 gyrB; DNA gyrase, subunit B (type II topoisomerase) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] E Supressor F CMR15_10109 hupB; DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation K03530 hupB; DNA-binding protein HU-beta F CMR15_10854 hupB; DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation K03530 hupB; DNA-binding protein HU-beta F CMR15_11727 hupB; DNA-binding protein HU-beta, transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta F CMR15_mp10395 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F CMR15_20319 recJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F CMR15_20183 recO; DNA repair protein recO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) F CMR15_20399 recR; Recombination protein recR K06187 recR; recombination protein RecR F CMR15_20609 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F CMR15_30399 putative transcriptional regulator, FIS family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F CMR15_11581 ihfA; integration host factor (IHF), alpha subunit K04764 ihfA; integration host factor subunit alpha F CMR15_20027 ihfB; Integration host factor subunit beta (IHF-beta) K05788 ihfB; integration host factor subunit beta E Supressor F CMR15_10275 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F CMR15_10369 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F CMR15_30486 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A F CMR15_mp20075 uvrA; Excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F CMR15_20126 uvrB; ATP-dependent DNA excision repair enzyme, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B F CMR15_mp10308 Histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F CMR15_mp20203 Histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F CMR15_mp20140 conserved hypothethical protein K03746 hns; DNA-binding protein H-NS F CMR15_mp10030 Histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F CMR15_30020 Histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D CMR15_11585 dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D CMR15_30349 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA D CMR15_20512 lexA; transcriptional lexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D CMR15_10761 recN; DNA repair protein recN (Recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N) D CMR15_mp10764 imuA; DNA damage-inducible mutagenesis protein K14160 imuA; protein ImuA D CMR15_mp10765 imuB; required for the error-prone processing of DNA lesions along with dnaE2 and imuA K14161 imuB; protein ImuB D CMR15_mp10766 dnaE; DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D CMR15_30484 ssb; ssDNA-binding protein, controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein D CMR15_30348 recX; recombination regulator RecX (Modulates recA activity) K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D CMR15_10177 rep; ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D CMR15_11628 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D CMR15_10584 mutT; Mutator mutT protein (7, 8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CMR15_mp20067 putative thiamine-phosphate pyrophosphorylase (thiE) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CMR15_10914 dut; deoxyuridinetriphosphatase (dUTP diphosphatase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CMR15_10610 nrdA; Ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CMR15_10611 nrdB; ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024