+F Repair protein KO #

  DNA Repair and Recombination Proteins - Ralstonia solanacearum Po82

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D RSPO_c00947 methylated-dna--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RSPO_c00908 ogt; methylated-DNA-[protein]-cysteine s-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RSPO_c02697 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E RSPO_c00621 ung; uracil-dna glycosylase (udg) protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E RSPO_c03004 mutY; a/g-specific adenine glycosylase protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RSPO_c02365 nth; endonuclease III protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D RSPO_c00677 mutT; mutator mutt protein (7, 8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RSPO_m01532 thiE2; thiamine-phosphate pyrophosphorylase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RSPO_c00982 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase (dutpase) (dutp pyrophosphatase) protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D RSPO_c00947 methylated-dna--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RSPO_c00908 ogt; methylated-DNA-[protein]-cysteine s-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RSPO_c00882 adaptative response regulator AdA K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D RSPO_c02697 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D RSPO_c00884 alkB; alpha-ketoglutarate-dependent dioxygenase alkb K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E RSPO_c00621 ung; uracil-dna glycosylase (udg) protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E RSPO_c01988 uracil-DNA glycosylase,phage-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E RSPO_c02203 DNA-3-methyladenine glycosylase protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E RSPO_c00883 alkA; dna-3-methyladenine glycosylase protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E RSPO_c00949 ada; bifunctional methylated-DNA--protein-cysteine methyltransferase/O-6-methylguanine-DNA transcription regulator K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E RSPO_c03004 mutY; a/g-specific adenine glycosylase protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RSPO_m01003 tag; DNA-3-methyladenine glycosylase I protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E RSPO_c03006 mutM; formamidopyrimidine-dna glycosylase protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E RSPO_c02365 nth; endonuclease III protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E RSPO_c03224 exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E RSPO_c01670 xthA; exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E RSPO_c02257 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E RSPO_c01956 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E RSPO_c01200 polA; dna polymeraseIprotein K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E RSPO_c02981 uvrA1; excinuclease abc subunit a (dna repair atp-binding protein) K03701 uvrA; excinuclease ABC subunit A E RSPO_m01256 uvrA2; excinuclease abc subunit a (dna repair atp-binding protein) K03701 uvrA; excinuclease ABC subunit A E RSPO_c02358 uvrB; uvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E RSPO_c02295 uvrC; excinuclease abc subunit c (sos response dna repair protein) K03703 uvrC; excinuclease ABC subunit C E RSPO_c01195 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RSPO_m00719 uvrD; DNA helicase II protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RSPO_c01200 polA; dna polymeraseIprotein K02335 polA; DNA polymerase I [EC:2.7.7.7] E RSPO_c01956 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F RSPO_c00461 rpoB; RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F RSPO_c00462 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F RSPO_c00503 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F RSPO_c01300 rpoZ; rna polymerase omega subunit protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F RSPO_c01726 mfd; transcription-repair ATP-dependent coupling factor, helicase K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E RSPO_c02220 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E RSPO_c00888 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E RSPO_c00357 sbcB; exodeoxyribonucleaseIprotein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E RSPO_c00924 xseA; exonuclease vII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E RSPO_c01207 xseB; exodeoxyribonuclease vII small subunit (exonuclease vII small subunit) protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E RSPO_c01227 dnaE1; dna polymerase III (alpha chain) protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E RSPO_c00002 dnaN; dna polymerase III (beta chain) protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E RSPO_c01037 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E RSPO_c00758 holA; dna polymerase III (delta subunit) protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E RSPO_c01817 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E RSPO_c01518 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RSPO_c02177 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E RSPO_c01956 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E RSPO_c01195 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RSPO_m00719 uvrD; DNA helicase II protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RSPO_c02979 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E RSPO_c02829 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E RSPO_c02889 ruvA; holliday junction dna helicase ruva protein K03550 ruvA; holliday junction DNA helicase RuvA E RSPO_c02890 ruvB; holliday junction dna helicase ruvb protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RSPO_c02887 ruvC; endodeoxyribonuclease subunit C of ruvABC holliday junction resolvasome K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E RSPO_c00144 priA; primosome factor n' (replication factor y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E RSPO_c02049 priB; primosomal replication protein n K02686 priB; primosomal replication protein N E RSPO_c00357 sbcB; exodeoxyribonucleaseIprotein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RecFOR pathway proteins E RSPO_c02829 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E RSPO_c01984 radA; atp-dependent protease, dna repair (atp-binding dna-binding) protein (sms protein) K04485 radA; DNA repair protein RadA/Sms E RSPO_c00792 recG; atp-dependent dna helicase protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E RSPO_c02257 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E RSPO_c02301 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E RSPO_c02174 recR; recombination protein RecR K06187 recR; recombination protein RecR E RSPO_c00850 recN; DNA repair protein recn (recombination protein n) K03631 recN; DNA repair protein RecN (Recombination protein N) E RSPO_c02734 rdgC; recombination associated protein K03554 rdgC; recombination associated protein RdgC E RSPO_c02889 ruvA; holliday junction dna helicase ruva protein K03550 ruvA; holliday junction DNA helicase RuvA E RSPO_c02890 ruvB; holliday junction dna helicase ruvb protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RSPO_c02887 ruvC; endodeoxyribonuclease subunit C of ruvABC holliday junction resolvasome K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E RSPO_c02179 addA; recombinational repair-like protein, atp-dependent exodnase (exonuclease v) beta subunit K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D Other HR factor E RSPO_c01089 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E RSPO_c01245 predicted atpase protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F RSPO_c02458 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F RSPO_c00003 gyrB; dna gyrase (subunit b) protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] E Supressor F RSPO_c00081 dbhB; histone-like dna-binding protein hu-beta (ns1) K03530 hupB; DNA-binding protein HU-beta F RSPO_c00930 hupB2; dna-binding protein hu-beta (ns1) (hu-1) K03530 hupB; DNA-binding protein HU-beta F RSPO_c01750 hupB1; dna-binding protein hu-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F RSPO_c02257 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F RSPO_c02301 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F RSPO_c02174 recR; recombination protein RecR K06187 recR; recombination protein RecR F RSPO_c01956 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F RSPO_c01657 ihfA; integration host factor alpha-subunit (ihf-alpha) protein K04764 ihfA; integration host factor subunit alpha F RSPO_c02448 ihfB; integration host factor beta-subunit (ihf-beta) protein K05788 ihfB; integration host factor subunit beta E Supressor F RSPO_c00357 sbcB; exodeoxyribonucleaseIprotein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F RSPO_c00470 recQ; atp-dependent dna helicase protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F RSPO_c02981 uvrA1; excinuclease abc subunit a (dna repair atp-binding protein) K03701 uvrA; excinuclease ABC subunit A F RSPO_m01256 uvrA2; excinuclease abc subunit a (dna repair atp-binding protein) K03701 uvrA; excinuclease ABC subunit A F RSPO_c02358 uvrB; uvrABC system protein B K03702 uvrB; excinuclease ABC subunit B F RSPO_c00259 hns; Histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F RSPO_m00039 hns; hns-like protein K03746 hns; DNA-binding protein H-NS F RSPO_m00895 hns-like protein K03746 hns; DNA-binding protein H-NS F RSPO_m01484 hns-like protein K03746 hns; DNA-binding protein H-NS F RSPO_m01341 conserved hypothetical protein K03746 hns; DNA-binding protein H-NS F RSPO_c02494 Histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D RSPO_c01663 dinB; DNA polymerase iv, devoid of proofreading, damage-inducible protein p K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D RSPO_c02829 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA D RSPO_c02054 lexA; lexa repressor protein K01356 lexA; repressor LexA [EC:3.4.21.88] D RSPO_c00850 recN; DNA repair protein recn (recombination protein n) K03631 recN; DNA repair protein RecN (Recombination protein N) D RSPO_m01103 sulA; cell division inhibitor protein K14160 imuA; protein ImuA D RSPO_m01105 dinP; dna polymerase iv protein K14161 imuB; protein ImuB D RSPO_m01106 dnaE2; dna polymerase III (alpha chain) protein K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D RSPO_c02979 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D RSPO_c02828 recX; recombinase X K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D RSPO_c00165 rep; atp-dependent dna helicase rep protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D RSPO_c01705 dinG; atp-dependent dna helicase-related protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D RSPO_c00677 mutT; mutator mutt protein (7, 8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RSPO_m01532 thiE2; thiamine-phosphate pyrophosphorylase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RSPO_c00982 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase (dutpase) (dutp pyrophosphatase) protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RSPO_c00703 nrdA; ribonucleoside reductase 1 (large chain) protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RSPO_c00704 nrdB; transmembrane ribonucleoside reductase (small chain) protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024