+E Transcription factors KO
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Transcription Factors - Ralstonia pseudosolanacearum GMI1000
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D RSc3438 probable site-specific dna methylase protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D RSc0869 putative bacteriophage cytosine-specific methyltransferase protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D RSc0132 probable transcription regulator protein K13652 K13652; AraC family transcriptional regulator
D RSp1247 probable transcription regulator protein K13652 K13652; AraC family transcriptional regulator
D RSp1157 probable transcription regulator protein K07506 K07506; AraC family transcriptional regulator
D RSc2570 ada; probable ada regulatory of adaptative response contains: methylated-dna--protein-cysteine methyltransferase ec 2.1.1.63 o-6-methylguanine-dna transcription regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RSc2566 putative methylated-dna--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RSc2505 putative transcription regulator protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RSp0054 probable transcriptional regulator transcription regulator protein K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D RSp0068 probable transcriptional regulator transcription regulator protein K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D RSc1108 probable transcriptional regulatory dna-binding transcription regulator protein K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D RSc2761 probable transcription regulator protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D RSc0325 probable transcription regulator protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D RSp0434 probable transcription regulator protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D RSp0912 probable transcriptional regulator transcription regulator protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D RSp0677 metR; putative transcriptional activator metr transcription regulator protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D RSc2690 oxyR; probable hydrogen peroxide-inducible genes activator transcription regulator protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D RSc2427 cysB2; putative cys regulon transcriptional activator-related transcription regulator protein K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D RSc1348 cysB1; putative cys regulon transcriptional activator transcription regulator protein K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D RSp0997 probable transcription regulator protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D RSp1110 probable transcription regulator protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D RSp0942 nac; probable nitrogen assimilation regulatory transcription regulator protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D RSc2748 phcA; hth-type transcriptional regulator phca (virulence genestranscriptional regulator phca). transcription regulator protein K19624 phcA; LysR family transcriptional regulator, virulence genes transcriptional regulator
D RSc0479 putative transcription regulator protein K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
C DeoR family
D RSc3044 glpR; probable glycerol-3-phosphate regulon repressor transcription regulator protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D RSc1014 probable transcriptional regulatory dna-binding repressor transcription regulator protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RSp1637 probable transcription regulator transcription regulator protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RSc2860 fruR; putative transcription regulation repressor transcription regulator protein K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D RSp1286 scrR; putative dna-binding sucrose operon transcriptional repressor transcription regulator protein K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D RSp1616 probable transcription regulator transcription regulator protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D RSc2648 hutC; probable histidine utilization repressor transcription regulator protein K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D RSc1997 probable transcription regulator protein K03710 K03710; GntR family transcriptional regulator
D RSp0336 probable transcription regulator protein K03710 K03710; GntR family transcriptional regulator
D RSp0079 putative dna-binding transcriptional regulatory transcription regulator protein K03710 K03710; GntR family transcriptional regulator
D RSp1506 probable transcription regulator protein K03710 K03710; GntR family transcriptional regulator
D RSc0030 putative transcription regulator protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D RSc3119 probable transcription regulator protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D RSc0012 acrR; putative acrab operon repressor transcription regulator protein K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D RSp0816 probable transcription regulator protein K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D RSc0031 probable transcription regulator protein K05501 slmA; TetR/AcrR family transcriptional regulator
D RSc1201 probable transcription regulator protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
C Lrp/AsnC family
D RSc0927 lrp; probable leucine-responsive regulatory dna-binding transcription regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RSc2318 probable transcription regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RSc2801 probable transcription regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RSc3102 probable transcription regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RSc0128 probable transcription regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RSc2320 conserved hypothetical protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RSp1317 probable transcription regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RSp1348 probable transcription regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RSp1377 probable transcription regulator protein K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
C LuxR family
D RSc3287 solR; transcriptional activator solr. transcription regulator protein K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR
C MarR family
D RSp0386 putative transcription regulator protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D RSp1106 putative transcription regulator protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D RSc3347 probable transcription regulator protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
C Fur family
D RSc0048 putative transcription regulator protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RSc2747 fur1; probable ferric uptake transcriptional repressor transcription regulator protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RSp0247 fur2; probable ferric uptake transcriptional (fur)-related transcription regulator protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
C IclR family
D RSc2255 probable transcription regulator protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D RSp0805 putative transcription regulator protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RSc1283 fnr; putative fumarate and nitrate reduction regulatory transcription regulator protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D RSc0190 probable transcription regulator protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D RSp0966 probable transcription regulator protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
C Rrf2 family
D RSc1018 putative of unknown function upf0074; transcription regulator protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D RSc3397 putative of unknown function upf0074; transcription regulator protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D RSp1129 arsR; putative arsenical resistance operon repressor transcription regulator protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
C PadR family
C Other families
D RSp1556 hexR; putative transcription regulation repressor hexr transcription regulator protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D RSc0312 birA; putative bifunctional protein: biotin operon repressor and biotin--[acetyl-coa-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RSc0505 fis; putative fis-like dna-binding. transcription regulator protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D RSp0123 prpR; putative propionate catabolism operon regulatory transcription regulator protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D RSp1252 hipB; putative transcription regulator protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D RSc1447 putative transcription regulator protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D RSc3129 acoR; putative acetoin catabolism regulatory transcription regulator protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D RSp0959 probable sigma-54 interacting transcription regulator protein K12266 norR; anaerobic nitric oxide reductase transcription regulator
D RSp1153 putative transcription regulator protein K02019 modE; molybdate transport system regulatory protein
D RSc0125 putative lambda repressor-like; transcription regulator protein K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D RSc3301 putA; probable bifunctional: proline dehydrogenase and proline oxidase delta-1-pyrroline-5-carboxylate dehydrogenase transcription regulator protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D RSp1369 nosR; probable transmembrane regulatory nosr transcription regulator protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D RSp0553 hypothetical protein of unknown function duf156 K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression
D RSc1745 putative transcription regulator protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D RSc3325 parB2; putative chromosome partitioning protein parb K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RSp0004 parB; putative partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RSc2617 conserved hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RSc2649 hrcA; probable heat-inducible transcription repressor hrca. transcription regulator protein K03705 hrcA; heat-inducible transcriptional repressor
D RSc2636 rnk; putative regulator of nucleoside diphosphate kinase transcription regulator protein K06140 rnk; regulator of nucleoside diphosphate kinase
D RSc0677 pyrR; putative pyrr bifunctional protein [includes: pyrimidine operon regulatoryprotein; uracil phosphoribosyltransferase (uprtase)]. K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D RSc0962 putative bacteriophage dna-binding transcription regulator protein K07733 alpA; prophage regulatory protein
D RSc1897 probable prophage regulatory transcription regulator protein K07733 alpA; prophage regulatory protein
D RSp0689 probable negative transcriptional regulator transcription regulator protein K07734 paiB; transcriptional regulator
D RSc0675 cog1678, putative transcriptional regulator protein K07735 algH; putative transcriptional regulator
D RSc0046 dksA; putative dnak suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D RSc0728 putative transcriptional regulator protein K07738 nrdR; transcriptional repressor NrdR
D RSc0222 rtcR; probable sigma-54 interacting transcription regulator protein K14414 rtcR; transcriptional regulatory protein RtcR
D RSp1003 xpsR; transcription regulator xpsr transcription regulator protein K19667 xpsR; transcriptional activator of eps genes
D RSc2853 hypothetical protein mraz. K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0