+D GENES KO
#
KEGG Orthology (KO) - Ramlibacter tataouinensis
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:rta00010]
D Rta_07340 N-acetylmannosamine kinase(ManNAc kinase)-like protein K00845 glk; glucokinase [EC:2.7.1.2]
D Rta_35160 pgi; Phosphohexose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Rta_10380 D-fructose-1,6-bisphosphate 1-phosphohydrolase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Rta_36820 fba; Candidate fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Rta_26450 Triose-phosphate isomerase (Triosephosphate isomerase)-like protein K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Rta_37760 gapA; candidate glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Rta_36850 pgk; Candidate phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Rta_30770 gpmA; candidate 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (Phosphoglyceromutase) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rta_07180 gpmB; Candidate phosphoglycerate mutase (Phosphoglyceromutase) K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rta_25820 eno; 2-phospho-D-glycerate hydro-lyase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Rta_36840 pykA; Candidate pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Rta_24170 ppsA; Candidate phosphoenolpyruvate synthase (Pyruvate,water dikinase) K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Rta_18670 aceE; candidate pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Rta_05160 aceE; Candidate pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Rta_18680 aceF; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Rta_18700 Candidate dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_18810 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_10510 lpd; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_01030 adhC; Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rta_01070 hypothetical protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rta_02500 Candidate NADP-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D Rta_23090 Aldehyde dehydrogenase (NAD+)-like protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rta_15940 acsA; candidate acetyl-coenzyme A synthetase(Acetate--CoA ligase) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rta_10430 Acetyl-CoA synthase (Acetate thiokinase) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rta_14110 pimeloyl-CoA synthetase-like protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D Rta_17720 conserved hypothetical protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Rta_08280 Conserved hypothetical protein K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D Rta_01270 ppcK; Candidate Phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
C 00020 Citrate cycle (TCA cycle) [PATH:rta00020]
D Rta_28130 gltA; Candidate citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Rta_27960 acnA; Candidate aconitase (aconitate hydratase) K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D Rta_28030 acnB; Aconitase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D Rta_21850 icdA; Candidate isocitrate dehydrogenase [NADP] (Oxalosuccinate decarboxylase) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Rta_18790 sucA; candidate 2-oxoglutarate dehydrogenase E1 component (Alpha-ketoglutarate dehydrogenase) K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D Rta_18800 sucB; Dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Rta_18700 Candidate dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_18810 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_10510 lpd; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_37410 sucD; candidate succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Rta_37420 sucC; candidate succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Rta_28100 sdhA; Candidate succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Rta_28110 sdhB; Candidate succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Rta_25290 sdhB; Candidate succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Rta_28080 succinate dehydrogenase cytochrome b-556 subunit-like protein K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Rta_28090 succinate dehydrogenase hydrophobic membrane anchor protein-like protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Rta_15830 fumA; candidate fumarate hydratase class I (Fumarase) K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D Rta_15850 fumC; candidate fumarate hydratase class II (Fumarase C) K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D Rta_28060 Candidate malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rta_01270 ppcK; Candidate Phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D Rta_18670 aceE; candidate pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Rta_05160 aceE; Candidate pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Rta_18680 aceF; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:rta00030]
D Rta_35160 pgi; Phosphohexose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Rta_35180 zwf; Candidate glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Rta_35910 rpe; Candidate ribulose-phosphate 3-epimerase (Pentose-5-phosphate 3-epimerase) K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Rta_31430 1-deoxy-D-xylulose-5-phosphate pyruvate-lyase (carboxylating) K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rta_31440 tkt; conserved hypothetical protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rta_37770 candidate transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rta_35170 tal; Candidate transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D Rta_18610 rpiA; candidate ribose 5-phosphate isomerase A (Phosphoriboisomerase A) K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D Rta_22510 Candidate ATP-binding protein phnN K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23]
D Rta_33280 prs; candidate ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Rta_11340 edd; candidate phosphogluconate dehydratase (6-phosphogluconate dehydratase) K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D Rta_11350 eda; candidate bifunctional protein: 4-hydroxy-2-oxoglutarate aldolase (2-keto-4-hydroxyglutarate aldolase); 2-dehydro-3-deoxyphosphogluconate aldolase (Phospho-2-dehydro-3-deoxygluconate aldolase) K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D Rta_17730 gluconolactonase precursor-like protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D Rta_06280 Candidate oxidoreductase K06151 E1.1.99.3A; gluconate 2-dehydrogenase alpha chain [EC:1.1.99.3]
D Rta_11600 choline dehydrogenase and related flavoprotein-like protein K06151 E1.1.99.3A; gluconate 2-dehydrogenase alpha chain [EC:1.1.99.3]
D Rta_11590 conserved hypothetical protein K06152 E1.1.99.3G; gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3]
D Rta_06290 Conserved hypothetical protein K06152 E1.1.99.3G; gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3]
D Rta_24600 tkrA; Candidate 2-ketogluconate reductase (Gluconate 2-dehydrogenase) K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D Rta_05230 Candidate 2-dehydro-3-deoxygluconokinase K11441 kguK; dehydrogluconokinase [EC:2.7.1.13]
D Rta_05240 tkrA; Candidate Gluconate 2-dehydrogenase (2-ketogluconate reductase) K00032 E1.1.1.43; phosphogluconate 2-dehydrogenase [EC:1.1.1.43]
D Rta_07490 idnK; Candidate thermosensitive gluconokinase (Gluconate kinase 1) K00851 idnK; gluconokinase [EC:2.7.1.12]
D Rta_11250 fructokinase-like protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D Rta_32530 ttuD; candidate hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Rta_36820 fba; Candidate fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Rta_10380 D-fructose-1,6-bisphosphate 1-phosphohydrolase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:rta00040]
D Rta_16110 ugd; candidate UDP-glucose 6-dehydrogenase (UDP-Glc dehydrogenase) K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Rta_31460 galU; candidate UTP--glucose-1-phosphate uridylyltransferase (UDP-glucose pyrophosphorylase) K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Rta_35560 Conserved hypothetical protein K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D Rta_35910 rpe; Candidate ribulose-phosphate 3-epimerase (Pentose-5-phosphate 3-epimerase) K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Rta_29610 dalD; candidate D-arabinitol 4-dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]
D Rta_17650 oxidoreductases-like protein K22185 xylB; D-xylose 1-dehydrogenase [EC:1.1.1.175]
C 00051 Fructose and mannose metabolism [PATH:rta00051]
D Rta_13720 fructokinase-like protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Rta_10960 phosphomannomutase/phosphoglucomutase-like protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Rta_06865 Phosphomannomutase/phosphoglucomutase-like protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Rta_09030 dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434]
D Rta_09050 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase-like protein K18336 lra6; 2,4-didehydro-3-deoxy-L-rhamnonate hydrolase [EC:3.7.1.26]
D Rta_09040 3-oxoacyl-[acyl-carrier-protein] reductase-like protein K21883 lra5; 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) [EC:1.1.1.401]
D Rta_10380 D-fructose-1,6-bisphosphate 1-phosphohydrolase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Rta_29610 dalD; candidate D-arabinitol 4-dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]
D Rta_36820 fba; Candidate fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Rta_26450 Triose-phosphate isomerase (Triosephosphate isomerase)-like protein K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Rta_03440 candidate PTS system, enzyme IIA mannose K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
C 00052 Galactose metabolism [PATH:rta00052]
D Rta_17720 conserved hypothetical protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Rta_05040 galK; candidate galactokinase (Galactose kinase) K00849 galK; galactokinase [EC:2.7.1.6]
D Rta_05030 Gal-1-P uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D Rta_28270 galE; UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Rta_21100 galE; UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Rta_31460 galU; candidate UTP--glucose-1-phosphate uridylyltransferase (UDP-glucose pyrophosphorylase) K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Rta_07340 N-acetylmannosamine kinase(ManNAc kinase)-like protein K00845 glk; glucokinase [EC:2.7.1.2]
D Rta_05060 glf; candidate UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D Rta_12390 2-oxo-3-deoxygalactonate 6-phosphate aldolase; Galactonate dehydratase K01684 dgoD; galactonate dehydratase [EC:4.2.1.6]
D Rta_11540 2-oxo-3-deoxygalactonate 6-phosphate aldolase; Galactonate dehydratase K01684 dgoD; galactonate dehydratase [EC:4.2.1.6]
D Rta_11480 2-oxo-3-deoxygalactonate kinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
D Rta_11470 2-oxo-3-deoxygalactonate 6-phosphate aldolase; Galactonate dehydratase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]
C 00053 Ascorbate and aldarate metabolism [PATH:rta00053]
D Rta_16110 ugd; candidate UDP-glucose 6-dehydrogenase (UDP-Glc dehydrogenase) K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Rta_17730 gluconolactonase precursor-like protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D Rta_35560 Conserved hypothetical protein K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D Rta_23090 Aldehyde dehydrogenase (NAD+)-like protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rta_19130 gudD; candidate Glucarate dehydratase K01706 gudD; glucarate dehydratase [EC:4.2.1.40]
D Rta_11490 ilvD; candidate dihydroxy-acid dehydratase K13875 araC; L-arabonate dehydrase [EC:4.2.1.25]
D Rta_19100 candidate 5-dehydro-4-deoxyglucarate dehydratase (5-keto-4-deoxy-glucarate dehydratase) K01707 kdgD; 5-dehydro-4-deoxyglucarate dehydratase [EC:4.2.1.41]
D Rta_19120 garD; candidate D-galactarate dehydratase K01708 garD; galactarate dehydratase [EC:4.2.1.42]
C 00500 Starch and sucrose metabolism [PATH:rta00500]
D Rta_31460 galU; candidate UTP--glucose-1-phosphate uridylyltransferase (UDP-glucose pyrophosphorylase) K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Rta_06220 candidate b-glucosidase, Glycoside Hydrolase Family 3 K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Rta_10360 candidate endo-1,4-glucanase, Glycoside Hydrolase Family 5 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Rta_06740 candidate endo-1,4-glucanase, Glycoside Hydrolase Family 5 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Rta_24830 glgC; Candidate glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase) K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D Rta_32410 animal glycogenin, Glycosyltransferase Family 8-like protein K00750 GYG1; glycogenin [EC:2.4.1.186]
D Rta_36500 candidate trehalose-6-phosphate synthase, Glycosyltransferase Family 20 K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D Rta_36480 otsB; candidate trehalose 6-phosphate phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D Rta_07340 N-acetylmannosamine kinase(ManNAc kinase)-like protein K00845 glk; glucokinase [EC:2.7.1.2]
D Rta_35160 pgi; Phosphohexose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Rta_13720 fructokinase-like protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rta00520]
D Rta_28360 candidate b-N-acetylhexosaminidase, Glycoside Hydrolase Family 3 K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Rta_29975 nagA; candidate N-acetylglucosamine 6-phosphate deacetylase (NagA), Carbohydrate Esterase Family 9 K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D Rta_30025 N-acetylglucosamine kinase-like protein K18676 gspK; glucosamine kinase [EC:2.7.1.8]
D Rta_13720 fructokinase-like protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Rta_07630 glmS; Candidate Glucosamine-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Rta_29974 Conserved hypothetical protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Rta_17750 glmM; candidate phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D Rta_07530 glmU; Candidate Bifunctional glmU protein K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Rta_07060 Conserved hypothetical protein K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D Rta_13710 gph; candidate phosphoglycolate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D Rta_37910 conserved hypothetical protein K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D Rta_37790 nucleotidyltransferases-like protein K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D Rta_08210 murA; Candidate UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Rta_10580 murB; candidate UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Rta_16090 dTDP-glucose 4,6-dehydratase-like protein K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D Rta_07340 N-acetylmannosamine kinase(ManNAc kinase)-like protein K00845 glk; glucokinase [EC:2.7.1.2]
D Rta_31460 galU; candidate UTP--glucose-1-phosphate uridylyltransferase (UDP-glucose pyrophosphorylase) K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Rta_16110 ugd; candidate UDP-glucose 6-dehydrogenase (UDP-Glc dehydrogenase) K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Rta_05040 galK; candidate galactokinase (Galactose kinase) K00849 galK; galactokinase [EC:2.7.1.6]
D Rta_05030 Gal-1-P uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D Rta_28270 galE; UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Rta_21100 galE; UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Rta_05060 glf; candidate UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D Rta_03440 candidate PTS system, enzyme IIA mannose K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Rta_35160 pgi; Phosphohexose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Rta_10960 phosphomannomutase/phosphoglucomutase-like protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Rta_06865 Phosphomannomutase/phosphoglucomutase-like protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Rta_24830 glgC; Candidate glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase) K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D Rta_31550 Ferredoxin--NAD(+) reductase-like protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D Rta_16030 CDP-tyvelose-2-epimerase (CDP-paratose 2-epimerase)-like protein K12454 rfbE; CDP-paratose 2-epimerase [EC:5.1.3.10]
C 00620 Pyruvate metabolism [PATH:rta00620]
D Rta_15940 acsA; candidate acetyl-coenzyme A synthetase(Acetate--CoA ligase) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rta_10430 Acetyl-CoA synthase (Acetate thiokinase) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rta_18670 aceE; candidate pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Rta_05160 aceE; Candidate pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Rta_18680 aceF; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Rta_18700 Candidate dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_18810 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_10510 lpd; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_01030 adhC; Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rta_01070 hypothetical protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rta_02500 Candidate NADP-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D Rta_36840 pykA; Candidate pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Rta_15420 accA; Candidate Acetyl-CoA carboxylase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Rta_09980 accB; Candidate Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Rta_09990 accC; Candidate Biotin carboxylase (subunit of acetyl-CoA carboxylase) K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Rta_28240 accD; Candidate Acetyl-CoA carboxylase carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Rta_23090 Aldehyde dehydrogenase (NAD+)-like protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rta_14110 pimeloyl-CoA synthetase-like protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D Rta_27130 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases-like protein K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D Rta_28850 lldD; candidate L-lactate dehydrogenase (Cytochrome) K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D Rta_29390 candidate bifunctional protein : L-lactate dehydrogenase;Citrate (pro-3S)-lyase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D Rta_26940 pyruvate dehydrogenase-like protein K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D Rta_00850 dld; Candidate D-lactate dehydrogenase (cytochrome) K00102 LDHD; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4]
D Rta_18280 conserved hypothetical protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D Rta_11380 gloA; candidate lactoylglutathione lyase (Methylglyoxalase) K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D Rta_21340 Conserved hypothetical protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D Rta_23230 gloB; Candidate hydroxyacylglutathione hydrolase (Glyoxalase II) K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Rta_06660 D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D Rta_24600 tkrA; Candidate 2-ketogluconate reductase (Gluconate 2-dehydrogenase) K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D Rta_37850 bifunctional protein : malic enzyme; phosphate acetyltransferase (phosphotransacetylase)-like protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D Rta_28060 Candidate malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rta_15830 fumA; candidate fumarate hydratase class I (Fumarase) K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D Rta_15850 fumC; candidate fumarate hydratase class II (Fumarase C) K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D Rta_28690 ppc; candidate phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Rta_01270 ppcK; Candidate Phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D Rta_24170 ppsA; Candidate phosphoenolpyruvate synthase (Pyruvate,water dikinase) K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Rta_02700 glcB; Candidate Malate synthase K01638 aceB; malate synthase [EC:2.3.3.9]
D Rta_18100 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_05680 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_20040 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_22910 leuA1; Alpha-IPM synthetase 1 K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Rta_22920 leuA; Alpha-IPM synthetase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rta00630]
D Rta_23660 aceA; Isocitratase K01637 ICL; isocitrate/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30]
D Rta_15940 acsA; candidate acetyl-coenzyme A synthetase(Acetate--CoA ligase) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rta_10430 Acetyl-CoA synthase (Acetate thiokinase) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rta_02700 glcB; Candidate Malate synthase K01638 aceB; malate synthase [EC:2.3.3.9]
D Rta_28060 Candidate malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rta_28130 gltA; Candidate citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Rta_27960 acnA; Candidate aconitase (aconitate hydratase) K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D Rta_28030 acnB; Aconitase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D Rta_18100 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_05680 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_20040 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_18110 phbB; candidate acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D Rta_18270 accA; Candidate Acetyl or propionyl-CoA carboxylase subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D Rta_18250 candidate propionyl-CoA carboxylase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D Rta_18230 candidate methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Rta_36670 glcD; Candidate glycolate oxidase subunit glcD K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D Rta_01530 glcE; Candidate Glycolate oxidase subunit K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14]
D Rta_01540 gclF; Candidate Glycolate oxidase iron-sulfur subunit K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D Rta_35880 katE; Candidate hydroperoxidase II K03781 katE; catalase [EC:1.11.1.6]
D Rta_33070 katE; Candidate hydroperoxidase II K03781 katE; catalase [EC:1.11.1.6]
D Rta_20230 katE; Candidate hydroperoxidase II K03781 katE; catalase [EC:1.11.1.6]
D Rta_06380 Hydroxyperoxidase II-like protein K03781 katE; catalase [EC:1.11.1.6]
D Rta_06660 D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D Rta_24600 tkrA; Candidate 2-ketogluconate reductase (Gluconate 2-dehydrogenase) K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D Rta_35860 gph; candidate phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Rta_28620 phosphoglycolate phosphatase-like protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Rta_38110 phosphoglycolate phosphatase-like protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Rta_16260 candidate serine--glyoxylate aminotransferase (Serine--glyoxylate transaminase) K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Rta_14420 glnA; candidate glutamine synthetase (Glutamate--ammonia ligase) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_17990 glutamine synthetase (Glutamate--ammonia ligase)-like protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_37590 glutamine synthetase (Glutamate--ammonia ligase)-like protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_15320 glyA; candidate serine hydroxymethyltransferase (Serine methylase) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Rta_14660 gcvP; Glycine cleavage system P-protein K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D Rta_14680 gcvT; candidate aminomethyltransferase (Glycine cleavage system T protein) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Rta_18700 Candidate dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_18810 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_10510 lpd; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_14670 gcvH; candidate glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Rta_27120 TsaR K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
D Rta_32530 ttuD; candidate hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Rta_05880 ttuC; Candidate Tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D Rta_24470 Candidate tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D Rta_11350 eda; candidate bifunctional protein: 4-hydroxy-2-oxoglutarate aldolase (2-keto-4-hydroxyglutarate aldolase); 2-dehydro-3-deoxyphosphogluconate aldolase (Phospho-2-dehydro-3-deoxygluconate aldolase) K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D Rta_30510 fdhF; candidate formate dehydrogenase large subunit (Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide) K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Rta_30590 formate dehydrogenase (Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide)-like protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Rta_30600 NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit and subunit 1 or 51 kDa subunit fusion, chain E and chain F fusion-like protein K22515 fdwB; formate dehydrogenase beta subunit [EC:1.17.1.9]
D Rta_30500 fdhB; candidate formate dehydrogenase iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Rta_30480 candidate formate dehydrogenase subunit C precursor K00127 fdoI; formate dehydrogenase subunit gamma
D Rta_12730 conserved hypothetical protein K01432 AFMID; arylformamidase [EC:3.5.1.9]
D Rta_02350 Candidate Esterase/lipase K01432 AFMID; arylformamidase [EC:3.5.1.9]
D Rta_27910 Conserved hypothetical protein K07130 kynB; arylformamidase [EC:3.5.1.9]
D Rta_36630 purU; Candidate formyltetrahydrofolate deformylase (Formyl-FH(4) hydrolase) K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:rta00640]
D Rta_15940 acsA; candidate acetyl-coenzyme A synthetase(Acetate--CoA ligase) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rta_10430 Acetyl-CoA synthase (Acetate thiokinase) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rta_18780 prpE; candidate propionate--CoA ligase (Propionyl-CoA synthetase) K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D Rta_14110 pimeloyl-CoA synthetase-like protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D Rta_10480 bkdA1; Candidate 2-oxoisovalerate dehydrogenase, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D Rta_10490 bkdA2; Candidate 2-oxoisovalerate dehydrogenase, beta subunit K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D Rta_10500 bkdB; Candidate Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D Rta_18700 Candidate dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_18810 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_10510 lpd; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_05720 Unsaturated acyl-CoA reductaseButyryl dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D Rta_23880 alcohol dehydrogenase-like protein K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D Rta_34370 Unsaturated acyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rta_15420 accA; Candidate Acetyl-CoA carboxylase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Rta_09980 accB; Candidate Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Rta_09990 accC; Candidate Biotin carboxylase (subunit of acetyl-CoA carboxylase) K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Rta_28240 accD; Candidate Acetyl-CoA carboxylase carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Rta_16180 malonyl-CoA decarboxylase (Malonyl-CoA carboxy-lyase)-like protein K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9]
D Rta_36600 Beta-alanine--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D Rta_18270 accA; Candidate Acetyl or propionyl-CoA carboxylase subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D Rta_18250 candidate propionyl-CoA carboxylase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D Rta_18230 candidate methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Rta_37420 sucC; candidate succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Rta_37410 sucD; candidate succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Rta_02980 Candidate NAD-dependent aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Rta_28030 acnB; Aconitase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
C 00650 Butanoate metabolism [PATH:rta00650]
D Rta_18100 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_05680 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_20040 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_22040 3-hydroxybutyryl-CoA dehydrogenase (Beta-hydroxybutyryl-CoA dehydrogenase)-like protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D Rta_09140 Unsaturated acyl-CoA hydratase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Rta_20050 3-hydroxybutyryl-CoA epimerase-like protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Rta_34370 Unsaturated acyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rta_05720 Unsaturated acyl-CoA reductaseButyryl dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D Rta_18090 phbC; candidate poly-beta-hydroxybutyrate polymerase (Poly(3-hydroxybutyrate) polymerase) K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D Rta_18320 candidate poly-beta-hydroxyalkanoate depolymerase K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
D Rta_18110 phbB; candidate acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D Rta_05880 ttuC; Candidate Tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D Rta_24470 Candidate tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D Rta_32550 maleate cis-trans isomerase-like protein K01799 nicE; maleate isomerase [EC:5.2.1.1]
D Rta_28100 sdhA; Candidate succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Rta_28110 sdhB; Candidate succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Rta_25290 sdhB; Candidate succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Rta_28080 succinate dehydrogenase cytochrome b-556 subunit-like protein K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Rta_28090 succinate dehydrogenase hydrophobic membrane anchor protein-like protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Rta_11430 gabD; candidate succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Rta_19890 Alcohol dehydrogenase (Aldehyde reductase)-like protein K00043 gbd; 4-hydroxybutyrate dehydrogenase [EC:1.1.1.61]
D Rta_18760 vinylacetyl-CoA delta-isomerase-like protein K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3]
D Rta_14260 hydroxymethylglutaryl-CoA lyase (3-hydroxy-3-methylglutarate-CoA lyase)-like protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Rta_06670 Candidate Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Rta_21710 hydroxymethylglutaryl-CoA lyase (HMG-CoA lyase)-like protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Rta_14810 candidate succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (Succinyl CoA:3-oxoacid CoA-transferase) K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D Rta_14820 candidate succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (Succinyl CoA:3-oxoacid CoA-transferase) K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D Rta_00980 Candidate acetoacetate--CoA ligase (Acetoacetyl-CoA synthetase) K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D Rta_17330 candidate D-beta-hydroxybutyrate dehydrogenase (BDH) K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D Rta_15680 D-(-)-3-hydroxybutyrate oligomer hydrolase-like protein K07518 E3.1.1.22; hydroxybutyrate-dimer hydrolase [EC:3.1.1.22]
D Rta_14300 acetolactate synthase large subunit (Acetohydroxy-acid synthase large subunit)-like protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rta_16710 Acetohydroxy-acid synthase small subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rta_22960 ilvI; candidate acetolactate synthase large subunit (Acetohydroxy-acid synthase large subunit) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rta_23720 acetolactate synthase large subunit (Acetohydroxy-acid synthase large subunit)-like protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rta_22950 ilvH; candidate acetolactate synthase small subunit (Acetohydroxy-acid synthase small subunit) K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Rta_20970 3-oxoacyl-[acyl-carrier-protein] reductase-like protein K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
C 00660 C5-Branched dibasic acid metabolism [PATH:rta00660]
D Rta_14300 acetolactate synthase large subunit (Acetohydroxy-acid synthase large subunit)-like protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rta_16710 Acetohydroxy-acid synthase small subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rta_22960 ilvI; candidate acetolactate synthase large subunit (Acetohydroxy-acid synthase large subunit) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rta_23720 acetolactate synthase large subunit (Acetohydroxy-acid synthase large subunit)-like protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rta_22950 ilvH; candidate acetolactate synthase small subunit (Acetohydroxy-acid synthase small subunit) K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Rta_16640 formyl-coenzyme A transferase (Formyl-CoA transferase)-like protein K18289 ict-P; itaconate CoA-transferase [EC:2.8.3.- 2.8.3.22]
D Rta_37420 sucC; candidate succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Rta_37410 sucD; candidate succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Rta_24790 Candidate 4-Hydroxy-4-methyl-2-oxoglutarate aldolase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D Rta_13950 conserved hypothetical protein K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D Rta_11240 conserved hypothetical protein K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D Rta_29370 demethylmenaquinone methyltransferase-like protein K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D Rta_18460 leuC; Alpha-IPM isomerase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Rta_15480 leuC; Alpha-IPM isomerase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Rta_28150 leuC; candidate 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Rta_29310 leuC; Alpha-IPM isomerase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Rta_21660 leuC; Alpha-IPM isomerase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Rta_18450 leuD; Alpha-IPM isomerase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Rta_15475 leuD; Alpha-IPM isomerase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Rta_28160 leuD; candidate 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Rta_29300 leuD; Alpha-IPM isomerase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Rta_21650 leuD; Alpha-IPM isomerase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Rta_28170 leuB; candidate 3-isopropylmalate dehydrogenase (Beta-IPM dehydrogenase) K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D Rta_15910 3-isopropylmalate dehydrogenase (Beta-IPM dehydrogenase)-like protein K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:rta00562]
D Rta_26790 suhB; Candidate inositol-1-monophosphatase (Inositol-1-phosphatase) K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Rta_16050 conserved hypothetical protein K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D Rta_02980 Candidate NAD-dependent aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Rta_26450 Triose-phosphate isomerase (Triosephosphate isomerase)-like protein K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:rta00190]
D Rta_26430 nuoA; Candidate NADH:ubiquinone oxidoreductase subunit 7 or 3, chain A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D Rta_26420 nuoB; Candidate NADH:ubiquinone oxidoreductase subunit 6 or 20 kDa subunit, chain B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D Rta_26410 nuoC; Candidate NADH:ubiquinone oxidoreductase subunit 5 or 30 kDa subunit, chain C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D Rta_26400 nuoD; Candidate NADH:ubiquinone oxidoreductase subunit 4 or 49 kDa subunit, chain D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D Rta_26390 nuoE; Candidate NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit, chain E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D Rta_26380 nuoF; Candidate NADH:ubiquinone oxidoreductase subunit 1 or 51 kDa subunit, chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D Rta_26370 nuoG; Candidate NADH:ubiquinone oxidoreductase subunit 3 or 75 kDa subunit, chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D Rta_26360 nuoH; Candidate NADH:ubiquinone oxidoreductase subunit 8 or 1, chain H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D Rta_26350 nuoI; Candidate NADH:ubiquinone oxidoreductase subunit 9 or 23 kDa subunit, chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D Rta_26340 nuoJ; Candidate NADH:ubiquinone oxidoreductase subunit 10 or 6, chain J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D Rta_26330 nuoK; Candidate NADH:ubiquinone oxidoreductase subunit 11 or 4L, chain K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D Rta_26320 nuoL; Candidate NADH:ubiquinone oxidoreductase subunit 12 or 5, chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D Rta_26310 nuoM; Candidate NADH:ubiquinone oxidoreductase subunit 13 or 4, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D Rta_26300 nuoN; Candidate NADH:ubiquinone oxidoreductase subunit 14 or 2, chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D Rta_11920 NADH dehydrogenase-like protein K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D Rta_28100 sdhA; Candidate succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Rta_28110 sdhB; Candidate succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Rta_25290 sdhB; Candidate succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Rta_28080 succinate dehydrogenase cytochrome b-556 subunit-like protein K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Rta_28090 succinate dehydrogenase hydrophobic membrane anchor protein-like protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Rta_08420 petA; Candidate Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D Rta_08430 petB; Candidate cytochrome b, membrane protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D Rta_08440 petC; Candidate Cytochrome c1 precursor K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D Rta_33660 ctaB; candidate protoheme IX farnesyltransferase (Heme O synthase), membrane protein K02257 COX10; heme o synthase [EC:2.5.1.141]
D Rta_33710 ctaE; Oxidase AA(3) subunit 3; membrane protein K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D Rta_33750 ctaD; candidate cytochrome c oxidase polypeptide I (Cytochrome AA3 subunit 1); membrane protein K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D Rta_06250 ctaD; Candidate Cytochrome c oxidase polypeptide I (Cytochrome AA3 subunit 1) K15408 coxAC; cytochrome c oxidase subunit I+III [EC:7.1.1.9]
D Rta_33760 ctaC; candidate cytochrome c oxidase polypeptide II precursor (Cytochrome aa3 subunit 2) K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D Rta_06260 ctaC; Candidate Cytochrome c oxidase polypeptide II precursor (Cytochrome aa3 subunit 2) K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D Rta_33730 ctaG; candidate cytochrome C oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D Rta_33670 cytochrome AA3 controlling protein, membrane protein-like protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D Rta_25140 cytochrome d ubiquinol oxidase subunit I-like protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D Rta_25150 cytochrome bd-II oxidase subunit II-like protein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D Rta_16120 candidate cytochrome c-552 precursor K08738 CYC; cytochrome c
D Rta_03590 Candidate F-ATPase, alpha chain K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Rta_03610 Candidate F-ATPase, beta chain K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Rta_03600 Candidate F-ATPase, gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Rta_03580 Candidate F-ATPase, delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Rta_03620 Candidate F-ATPase, epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Rta_03550 Candidate F-ATPase, A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Rta_03570 Candidate F-ATPase, B chain K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Rta_03560 Candidate F-ATPase, C chain K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Rta_27760 ATP synthase C chain-like protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Rta_23050 ppa; Pyrophosphate phosphohydrolase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D Rta_23620 ppk; ATP-polyphosphate phosphotransferase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:rta00710]
D Rta_36850 pgk; Candidate phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Rta_37760 gapA; candidate glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Rta_36820 fba; Candidate fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Rta_10380 D-fructose-1,6-bisphosphate 1-phosphohydrolase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Rta_31430 1-deoxy-D-xylulose-5-phosphate pyruvate-lyase (carboxylating) K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rta_31440 tkt; conserved hypothetical protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rta_37770 candidate transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rta_18610 rpiA; candidate ribose 5-phosphate isomerase A (Phosphoriboisomerase A) K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D Rta_26450 Triose-phosphate isomerase (Triosephosphate isomerase)-like protein K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Rta_35910 rpe; Candidate ribulose-phosphate 3-epimerase (Pentose-5-phosphate 3-epimerase) K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Rta_35170 tal; Candidate transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D Rta_28690 ppc; candidate phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Rta_37850 bifunctional protein : malic enzyme; phosphate acetyltransferase (phosphotransacetylase)-like protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D Rta_28060 Candidate malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:rta00720]
D Rta_24170 ppsA; Candidate phosphoenolpyruvate synthase (Pyruvate,water dikinase) K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Rta_28690 ppc; candidate phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Rta_28060 Candidate malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rta_15830 fumA; candidate fumarate hydratase class I (Fumarase) K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D Rta_15850 fumC; candidate fumarate hydratase class II (Fumarase C) K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D Rta_28100 sdhA; Candidate succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Rta_28110 sdhB; Candidate succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Rta_25290 sdhB; Candidate succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Rta_28080 succinate dehydrogenase cytochrome b-556 subunit-like protein K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Rta_28090 succinate dehydrogenase hydrophobic membrane anchor protein-like protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Rta_37410 sucD; candidate succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Rta_37420 sucC; candidate succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Rta_18760 vinylacetyl-CoA delta-isomerase-like protein K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3]
D Rta_18100 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_05680 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_20040 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_21850 icdA; Candidate isocitrate dehydrogenase [NADP] (Oxalosuccinate decarboxylase) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Rta_27960 acnA; Candidate aconitase (aconitate hydratase) K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D Rta_28030 acnB; Aconitase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D Rta_15420 accA; Candidate Acetyl-CoA carboxylase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Rta_09980 accB; Candidate Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Rta_09990 accC; Candidate Biotin carboxylase (subunit of acetyl-CoA carboxylase) K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Rta_28240 accD; Candidate Acetyl-CoA carboxylase carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Rta_16620 conserved hypothetical protein K09709 meh; 3-methylfumaryl-CoA hydratase [EC:4.2.1.153]
D Rta_14200 conserved hypothetical protein K09709 meh; 3-methylfumaryl-CoA hydratase [EC:4.2.1.153]
D Rta_18230 candidate methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Rta_18640 folD; candidate bifunctional protein : methylenetetrahydrofolate dehydrogenase; Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Rta_06930 metF; Candidate 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Rta_15940 acsA; candidate acetyl-coenzyme A synthetase(Acetate--CoA ligase) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rta_10430 Acetyl-CoA synthase (Acetate thiokinase) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:rta00680]
D Rta_01030 adhC; Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rta_01070 hypothetical protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rta_01040 esterase, Carbohydrate Esterase Family 1-like protein K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D Rta_30510 fdhF; candidate formate dehydrogenase large subunit (Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide) K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Rta_30590 formate dehydrogenase (Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide)-like protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Rta_30600 NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit and subunit 1 or 51 kDa subunit fusion, chain E and chain F fusion-like protein K22515 fdwB; formate dehydrogenase beta subunit [EC:1.17.1.9]
D Rta_30500 fdhB; candidate formate dehydrogenase iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Rta_30480 candidate formate dehydrogenase subunit C precursor K00127 fdoI; formate dehydrogenase subunit gamma
D Rta_15320 glyA; candidate serine hydroxymethyltransferase (Serine methylase) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Rta_16260 candidate serine--glyoxylate aminotransferase (Serine--glyoxylate transaminase) K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Rta_32530 ttuD; candidate hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Rta_25820 eno; 2-phospho-D-glycerate hydro-lyase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Rta_28690 ppc; candidate phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Rta_28060 Candidate malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rta_36820 fba; Candidate fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Rta_10380 D-fructose-1,6-bisphosphate 1-phosphohydrolase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Rta_15940 acsA; candidate acetyl-coenzyme A synthetase(Acetate--CoA ligase) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rta_10430 Acetyl-CoA synthase (Acetate thiokinase) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rta_24170 ppsA; Candidate phosphoenolpyruvate synthase (Pyruvate,water dikinase) K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Rta_30770 gpmA; candidate 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (Phosphoglyceromutase) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rta_07180 gpmB; Candidate phosphoglycerate mutase (Phosphoglyceromutase) K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rta_13940 D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_11230 D-3-phosphoglycerate dehydrogenase (Phosphoglycerate dehydrogenase)-like protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_16870 serA; candidate D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_21540 D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_22020 D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_27970 serC; Candidate phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Rta_17240 candidate phosphoserine phosphatase (O-phosphoserine phosphohydrolase) K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:rta00910]
D Rta_26570 candidate ABC transporter probably involved in nitrate transport, periplasmic component K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D Rta_26580 candidate ABC transporter probably involved in nitrate transport, permease component K15577 nrtB; nitrate/nitrite transport system permease protein
D Rta_26590 candidate ABC transporter probably involved in nitrate transport, ATP-binding component K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D Rta_26630 Candidate molybdopterin oxidoreductase K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-]
D Rta_26600 Rubredoxin--NAD(+) reductase (Rubredoxin reductase)-like protein K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4]
D Rta_26620 assimilatory nitrite reductase [NAD(P)H] small subunit K26138 nasE; nitrite reductase [NAD(P)H] small subunit [EC:1.7.1.4]
D Rta_25160 2-nitropropane dioxygenase precursor (Nitroalkane oxidase)-like protein K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D Rta_06080 gdhA; Candidate NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Rta_14420 glnA; candidate glutamine synthetase (Glutamate--ammonia ligase) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_17990 glutamine synthetase (Glutamate--ammonia ligase)-like protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_37590 glutamine synthetase (Glutamate--ammonia ligase)-like protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_08100 gltB; Candidate Ferredoxin-dependent glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Rta_08110 gtlD; Candidate Glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Rta_05650 cynT; Candidate carbonate dehydratase (Carbonic anhydrase) K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:rta00920]
D Rta_20510 candidate ABC type sulfate transport systems, periplasmic component K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D Rta_22570 candidate ABC type sulfate transport systems, periplasmic component K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Rta_20500 candidate ABC type sulfate transport systems, permease component K02046 cysU; sulfate/thiosulfate transport system permease protein
D Rta_20490 candidate ABC type sulfate transport systems, permease component K02047 cysW; sulfate/thiosulfate transport system permease protein
D Rta_20480 candidate ABC type sulfate/molybdate transport systems, ATP-binding component K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Rta_23260 candidate ABC type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein
D Rta_22640 cysN; ATP-sulfurylase large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Rta_22630 cysD; ATP-sulfurylase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Rta_22620 cysH; 3 - phosphoadenylylsulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D Rta_19240 sulfite oxidase-like protein K00387 SUOX; sulfite oxidase [EC:1.8.3.1]
D Rta_13820 conserved hypothetical protein K17222 soxA; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D Rta_13830 conserved hypothetical protein K17223 soxX; L-cysteine S-thiosulfotransferase [EC:2.8.5.2]
D Rta_13800 conserved hypothetical protein K17226 soxY; sulfur-oxidizing protein SoxY
D Rta_13810 conserved hypothetical protein K17227 soxZ; sulfur-oxidizing protein SoxZ
D Rta_13840 candidate sulfur oxidation protein K17224 soxB; S-sulfosulfanyl-L-cysteine sulfohydrolase [EC:3.1.6.20]
D Rta_13780 nitrate reductase (NADH)-like protein K17225 soxC; sulfane dehydrogenase subunit SoxC
D Rta_13790 cytochrome c-like protein K22622 soxD; S-disulfanyl-L-cysteine oxidoreductase SoxD [EC:1.8.2.6]
D Rta_22600 ferredoxin--nitrite reductase-like protein K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D Rta_13730 candidate sulfide dehydrogenase [flavocytochrome c] flavoprotein chain precursor K17229 fccB; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [EC:1.8.2.3]
D Rta_13740 cytochrome c-like protein K17230 fccA; cytochrome subunit of sulfide dehydrogenase
D Rta_13050 3-mercaptopyruvate sulfurtransferase (Rhodanese-like protein)-like protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Rta_26770 cysE; Candidate serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Rta_38050 metX; Homoserine transacetylase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D Rta_10700 cystathionine gamma-synthase (O-succinylhomoserine (Thiol)-lyase)-like protein K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D Rta_20120 alkK; candidate medium-chain-fatty-acid--CoA ligase (Medium-chain acyl-CoA synthetase) K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44]
D Rta_25170 Butyryl-CoA dehydrogenase (Short-chain-acyl-CoA dehydrogenase)-like protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D Rta_09110 Unsaturated acyl-CoA reductaseButyryl dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D Rta_25000 Unsaturated acyl-CoA hydratase K20036 dmdD; (methylthio)acryloyl-CoA hydratase [EC:4.2.1.155]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:rta00061]
D Rta_15420 accA; Candidate Acetyl-CoA carboxylase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Rta_09980 accB; Candidate Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Rta_09990 accC; Candidate Biotin carboxylase (subunit of acetyl-CoA carboxylase) K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Rta_28240 accD; Candidate Acetyl-CoA carboxylase carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Rta_28510 acpP; Candidate Acyl-carrier-protein K02078 acpP; acyl carrier protein
D Rta_02520 Candidate Acyl carrier protein K02078 acpP; acyl carrier protein
D Rta_04950 acyl carrier protein-like protein K02078 acpP; acyl carrier protein
D Rta_28530 fabD; Candidate [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Rta_28540 fabH; Candidate 3-oxoacyl-[acyl-carrier-protein] synthase (Beta-ketoacyl-ACP synthase) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Rta_04120 Candidate 3-oxoacyl-[acyl-carrier-protein] synthase (Beta-ketoacyl-ACP synthase) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Rta_02610 fabB; Candidate 3-oxoacyl-[acyl-carrier-protein] synthase I (Beta-ketoacyl-ACP synthase) K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Rta_28500 fabF; Candidate 3-oxoacyl-[acyl-carrier-protein] synthase (Beta-ketoacyl-ACP synthase) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rta_04930 3-oxoacyl-[acyl-carrier-protein] reductase-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_14330 dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_23110 dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_28520 fabG; Candidate 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_02640 3-oxoacyl-[acyl-carrier-protein] reductase-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_22710 3-oxoacyl-[acyl-carrier-protein] reductase-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_31880 dehydrogenase/reductase-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_17220 dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_17540 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases-like protein K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Rta_19510 fabI; Candidate Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D Rta_34930 long-chain-fatty-acid--CoA ligase-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_02130 long-chain-fatty-acid--CoA ligase-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_05450 long-chain-fatty-acid--CoA ligase-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_04180 4-coumarate--CoA ligase (4-coumaroyl-CoA synthase)-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:rta00071]
D Rta_18100 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_05680 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_20040 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_09150 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Rta_34370 Unsaturated acyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rta_09140 Unsaturated acyl-CoA hydratase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Rta_20050 3-hydroxybutyryl-CoA epimerase-like protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Rta_05720 Unsaturated acyl-CoA reductaseButyryl dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D Rta_06620 Candidate Long chain acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rta_14140 Butyryl-CoA dehydrogenase (Short-chain-acyl-CoA dehydrogenase)-like protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rta_14210 acyl-CoA dehydrogenase-like protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rta_16630 acyl-CoA dehydrogenase-like protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rta_18160 Butyryl-CoA dehydrogenase (Short-chain-acyl-CoA dehydrogenase)-like protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rta_22080 Acyl dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rta_18180 gcdH; Candidate glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Rta_04870 gcdH; Candidate glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Rta_34930 long-chain-fatty-acid--CoA ligase-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_02130 long-chain-fatty-acid--CoA ligase-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_05450 long-chain-fatty-acid--CoA ligase-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_04180 4-coumarate--CoA ligase (4-coumaroyl-CoA synthase)-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_01030 adhC; Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rta_01070 hypothetical protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rta_23090 Aldehyde dehydrogenase (NAD+)-like protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis [PATH:rta00074]
D Rta_28370 acpS; 4-phosphopantetheinyltransferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D Rta_28510 acpP; Candidate Acyl-carrier-protein K02078 acpP; acyl carrier protein
D Rta_02520 Candidate Acyl carrier protein K02078 acpP; acyl carrier protein
D Rta_04950 acyl carrier protein-like protein K02078 acpP; acyl carrier protein
D Rta_28530 fabD; Candidate [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:rta00561]
D Rta_32530 ttuD; candidate hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Rta_23090 Aldehyde dehydrogenase (NAD+)-like protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rta_02500 Candidate NADP-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D Rta_04560 glpK; ATP:glycerol 3-phosphotransferase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Rta_28550 plsX; candidate fatty acid/phospholipid synthesis protein plsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Rta_10470 candidate membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Rta_05580 plsC; Candidate 1-acylglycerol-3-phosphate O-acyltransferase (lyso-phosphatidic acid acyltransferase) K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rta_34060 plsC; Candidate 1-acylglycerol-3-phosphate O-acyltransferase (lyso-phosphatidic acid acyltransferase) K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rta_26210 dgk; Candidate Diacylglycerol kinase (Diglyceride kinase) K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D Rta_26190 a-glycosyltransferase, Glycosyltransferase Family 4-like protein K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-]
C 00564 Glycerophospholipid metabolism [PATH:rta00564]
D Rta_30730 gpsA; NAD(P)H-dependent dihydroxyacetone-phosphate reductase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D Rta_36220 aerobic glycerol-3-phosphate dehydrogenase-like protein K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D Rta_04540 glpD; Candidate Glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D Rta_10470 candidate membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Rta_05580 plsC; Candidate 1-acylglycerol-3-phosphate O-acyltransferase (lyso-phosphatidic acid acyltransferase) K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rta_34060 plsC; Candidate 1-acylglycerol-3-phosphate O-acyltransferase (lyso-phosphatidic acid acyltransferase) K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rta_26210 dgk; Candidate Diacylglycerol kinase (Diglyceride kinase) K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D Rta_04060 Phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D Rta_31310 Glycerophosphodiester phosphodiesterase (Glycerophosphoryl diester phosphodiesterase)-like protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Rta_15580 glycerophosphoryl diester phosphodiesterase (Glycerophosphodiester phosphodiesterase)-like protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Rta_17000 phospholipid N-methyltransferase-like protein K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71]
D Rta_17480 cdsA; Candidate Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase) K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D Rta_17180 pssA; Candidate Phosphatidylserine synthase (CDP-diacylglycerol--serine O-phosphatidyltransferase) K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Rta_22930 pssA; Candidate Phosphatidylserine synthase (CDP-diacylglycerol--serine O-phosphatidyltransferase)(Phosphatidylserine synthase)(CDP-diglycerine-serine O-phosphatidyltransferase) K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Rta_34630 psd; Phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D Rta_24500 pgsA; Candidate CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Phosphatidylglycerophosphate synthase) K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D Rta_36000 pgp; Candidate Phosphatidylglycerophosphatase K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D Rta_25410 cls; Candidate cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D Rta_00420 ybhO; CL synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D Rta_31110 cardiolipin synthetase (Cardiolipin synthase)-like protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D Rta_16960 phospholipase D-like protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D Rta_13210 conserved hypothetical protein K06132 clsC; cardiolipin synthase C [EC:2.7.8.-]
D Rta_05430 cardiolipin synthetase (Cardiolipin synthase)-like protein K06132 clsC; cardiolipin synthase C [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:rta00565]
D Rta_04060 Phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
D Rta_04060 Phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D Rta_04060 Phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:rta00592]
D Rta_04060 Phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D Rta_09150 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:rta01040]
D Rta_04810 fatty acid desaturase, membrane protein-like protein K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D Rta_31710 stearoyl-coa desaturase oxidorecuctase protein-like protein K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D Rta_19160 Lysophospholipase (Lecithinase B)-like protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D Rta_09300 Acyl-CoA thioester hydrolase-like protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:rta00230]
D Rta_26280 ADP-ribose pyrophosphatase (ADP-ribose diphosphatase)-like protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Rta_33280 prs; candidate ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Rta_10690 purF; candidate amidophosphoribosyltransferase (Glutamine phosphoribosylpyrophosphate amidotransferase) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Rta_21190 purD; Phosphoribosylglycinamide synthetase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D Rta_31730 purN; 5 -phosphoribosylglycinamide transformylase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Rta_20330 purL; candidate phosphoribosylformylglycinamidine synthase (FGAM synthase) K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D Rta_27810 purM; candidate phosphoribosylformylglycinamidine cyclo-ligase(Phosphoribosyl-aminoimidazole synthetase) K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D Rta_36740 purK; Candidate phosphoribosylaminoimidazole carboxylase ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D Rta_36750 purE; Candidate phosphoribosylaminoimidazole carboxylase catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D Rta_36790 purC; Candidate phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D Rta_37250 purB; candidate adenylosuccinate lyase (Adenylosuccinase) K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Rta_34240 purH; candidate bifunctional purine biosynthesis protein : Phosphoribosylaminoimidazolecarboxamide formyltransferase; IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Rta_35070 Conserved hypothetical protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Rta_24430 surE; Candidate acid phosphatase (Stationary-phase survival protein) K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Rta_10610 conserved hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D Rta_18080 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Rta_19700 guaB; candidate Inosine-5 -monophosphate dehydrogenase (IMP dehydrogenase) K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Rta_18900 ndk; candidate nucleoside diphosphate kinase (Nucleoside-2-P kinase) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Rta_32920 candidate HAM1 protein K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D Rta_32380 Candidate xanthine dehydrogenase small subunit K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4]
D Rta_32390 Candidate xanthine dehydrogenase large subunit K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4]
D Rta_00250 xanthine dehydrogenase-like protein K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4]
D Rta_03670 Candidate Xanthine dehydrogenase K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4]
D Rta_04780 yagR; Candidate Xanthine dehydrogenase yagR, molybdenum binding subunit K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4]
D Rta_00240 4-hydroxybenzoyl-CoA reductase-like protein K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]
D Rta_03680 Candidate Xanthine dehydrogenase, FAD binding subunit K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]
D Rta_04770 yagS; Candidate xanthine dehydrogenase yagS, FAD binding subunit K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]
D Rta_00230 yagT; Candidate xanthine dehydrogenase yagT iron-sulfur binding subunit K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit
D Rta_03690 Candidate Xanthine dehydrogenase, iron-sulfur binding subunit K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit
D Rta_04760 yagT; Candidate xanthine dehydrogenase yagT, iron-sulfur binding subunit K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit
D Rta_19730 guaA; candidate GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Rta_12740 guaC; Guanosine monophosphate reductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D Rta_32210 guaD; candidate guanine deaminase (Guanase) K01487 guaD; guanine deaminase [EC:3.5.4.3]
D Rta_32980 gmk; candidate guanylate kinase (GMP kinase) K00942 gmk; guanylate kinase [EC:2.7.4.8]
D Rta_31420 guanylate kinase (GMP kinase)-like protein K00942 gmk; guanylate kinase [EC:2.7.4.8]
D Rta_34530 nrdA; Candidate ribonucleoside-diphosphate reductase, alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Rta_34540 nrdB; Candidate ribonucleoside reductase, beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Rta_08040 Candidate deoxyguanosinetriphosphate triphosphohydrolase (dGTPase) K01129 dgt; dGTPase [EC:3.1.5.1]
D Rta_33000 relA; candidate GTP pyrophosphokinase (GTP pyrophosphokinase) K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Rta_23550 ppx; Metaphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D Rta_17350 relA; candidate GTP pyrophosphokinase (GTP pyrophosphokinase) K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D Rta_25120 candidate response regulator, CyC-C K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D Rta_17850 Adenylyl cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D Rta_19050 purA; candidate adenylosuccinate synthetase (IMP--aspartate ligase) K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Rta_10020 sugar kinase, ribokinase family-like protein K00856 ADK; adenosine kinase [EC:2.7.1.20]
D Rta_34610 amn; candidate AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D Rta_32240 add; candidate adenosine deaminase (Adenosine aminohydrolase) K21053 ade; adenine deaminase [EC:3.5.4.2]
D Rta_21950 adk; Candidate adenylate kinase (ATP-AMP transphosphorylase) K00939 adk; adenylate kinase [EC:2.7.4.3]
D Rta_22640 cysN; ATP-sulfurylase large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Rta_22630 cysD; ATP-sulfurylase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Rta_32640 candidate transthyretin protein precursor K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D Rta_18440 allantoinase-like protein K01466 allB; allantoinase [EC:3.5.2.5]
D Rta_32650 GlcNAc deacetylase, Carbohydrate Esterase Family 4-like protein K16842 hpxB; allantoinase [EC:3.5.2.5]
D Rta_32870 ureC; candidate urease alpha subunit (Urea amidohydrolase) K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D Rta_32860 ureB; candidate urease beta subunit (Urea amidohydrolase) K01429 ureB; urease subunit beta [EC:3.5.1.5]
D Rta_32840 ureA; candidate urease gamma subunit (Urea amidohydrolase gamma subunit) K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00240 Pyrimidine metabolism [PATH:rta00240]
D Rta_17600 carB; candidate carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthase (ammonia)) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Rta_17590 carA; candidate carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate synthase (glutamine-hydrolyzing)) K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Rta_34080 pyrB; candidate aspartate carbamoyltransferase (Aspartate transcarbamylase) K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Rta_09410 pyrC; Candidate Dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D Rta_34070 pyrC; candidate dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D Rta_18600 pyrD; candidate dihydroorotate dehydrogenase (Dihydroorotate oxidase) K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D Rta_03880 pyrE; Candidate Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D Rta_01990 pyrF; Candidate Orotidine 5 -phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D Rta_17450 uridylate kinase (Uridine monophosphate kinase)-like protein K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D Rta_18900 ndk; candidate nucleoside diphosphate kinase (Nucleoside-2-P kinase) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Rta_21145 Candidate septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D Rta_25790 pyrG; Candidate CTP synthase (UTP--ammonia ligase) K01937 pyrG; CTP synthase [EC:6.3.4.2]
D Rta_35070 Conserved hypothetical protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Rta_24430 surE; Candidate acid phosphatase (Stationary-phase survival protein) K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Rta_10610 conserved hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D Rta_21250 upp; Candidate uracil phosphoribosyltransferase (UMP pyrophosphorylase) K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D Rta_34090 pyrR; candidate bifunctional protein : Pyrimidine operon attenuation regulatory protein; Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Rta_21350 codA; Candidate cytosine deaminase (Cytosine aminohydrolase) K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D Rta_32110 dcd; candidate deoxycytidine triphosphate deaminase (dCTP deaminase) K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D Rta_34530 nrdA; Candidate ribonucleoside-diphosphate reductase, alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Rta_34540 nrdB; Candidate ribonucleoside reductase, beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Rta_19840 tmk; candidate thymidylate kinase (dTMP kinase) K00943 tmk; dTMP kinase [EC:2.7.4.9]
D Rta_25770 dut; dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Rta_14490 thyA; candidate thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Rta_32660 N-carbamoyl-L-amino-acid hydrolase-like protein K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:rta00250]
D Rta_29290 aatA; candidate aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rta_30670 nadB; candidate L-aspartate oxidase (Quinolinate synthetase B) K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Rta_27330 aspartate racemase-like protein K01779 racD; aspartate racemase [EC:5.1.1.13]
D Rta_14030 aspartate racemase-like protein K01779 racD; aspartate racemase [EC:5.1.1.13]
D Rta_01470 L-asparaginase-like protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Rta_21980 L-asparaginase (L-asparagine amidohydrolase)-like protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Rta_34230 candidate asparagine synthetase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Rta_24050 Transaminase A K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Rta_16260 candidate serine--glyoxylate aminotransferase (Serine--glyoxylate transaminase) K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Rta_09360 aspA; Candidate Aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D Rta_10600 argG; candidate argininosuccinate synthase (Citrulline--aspartate ligase) K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Rta_28770 argH; candidate argininosuccinate lyase (Arginosuccinase) K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Rta_19050 purA; candidate adenylosuccinate synthetase (IMP--aspartate ligase) K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Rta_37250 purB; candidate adenylosuccinate lyase (Adenylosuccinase) K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Rta_34080 pyrB; candidate aspartate carbamoyltransferase (Aspartate transcarbamylase) K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Rta_11430 gabD; candidate succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Rta_08100 gltB; Candidate Ferredoxin-dependent glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Rta_08110 gtlD; Candidate Glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Rta_06080 gdhA; Candidate NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Rta_04440 putA; Candidate bifunctional putA protein : proline dehydrogenase, delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D Rta_14420 glnA; candidate glutamine synthetase (Glutamate--ammonia ligase) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_17990 glutamine synthetase (Glutamate--ammonia ligase)-like protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_37590 glutamine synthetase (Glutamate--ammonia ligase)-like protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_17600 carB; candidate carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthase (ammonia)) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Rta_17590 carA; candidate carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate synthase (glutamine-hydrolyzing)) K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Rta_06400 Candidate glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D Rta_07630 glmS; Candidate Glucosamine-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Rta_29974 Conserved hypothetical protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Rta_10690 purF; candidate amidophosphoribosyltransferase (Glutamine phosphoribosylpyrophosphate amidotransferase) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:rta00260]
D Rta_15450 lysC; candidate aspartokinase (Aspartate kinase) K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Rta_28180 asd; candidate aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Rta_24040 thrA; Candidate homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Rta_12820 thrB; candidate homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39]
D Rta_24010 thrC; Candidate threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Rta_35820 ltaE; Candidate low-specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D Rta_15320 glyA; candidate serine hydroxymethyltransferase (Serine methylase) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Rta_16260 candidate serine--glyoxylate aminotransferase (Serine--glyoxylate transaminase) K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Rta_06660 D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D Rta_24600 tkrA; Candidate 2-ketogluconate reductase (Gluconate 2-dehydrogenase) K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D Rta_32530 ttuD; candidate hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Rta_30770 gpmA; candidate 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (Phosphoglyceromutase) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rta_07180 gpmB; Candidate phosphoglycerate mutase (Phosphoglyceromutase) K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rta_13940 D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_11230 D-3-phosphoglycerate dehydrogenase (Phosphoglycerate dehydrogenase)-like protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_16870 serA; candidate D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_21540 D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_22020 D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_27970 serC; Candidate phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Rta_17240 candidate phosphoserine phosphatase (O-phosphoserine phosphohydrolase) K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D Rta_14660 gcvP; Glycine cleavage system P-protein K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D Rta_14680 gcvT; candidate aminomethyltransferase (Glycine cleavage system T protein) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Rta_18700 Candidate dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_18810 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_10510 lpd; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_14670 gcvH; candidate glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Rta_17180 pssA; Candidate Phosphatidylserine synthase (CDP-diacylglycerol--serine O-phosphatidyltransferase) K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Rta_22930 pssA; Candidate Phosphatidylserine synthase (CDP-diacylglycerol--serine O-phosphatidyltransferase)(Phosphatidylserine synthase)(CDP-diglycerine-serine O-phosphatidyltransferase) K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Rta_35300 ilvA; Candidate threonine dehydratase biosynthetic (Threonine deaminase) K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Rta_05340 threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Rta_01290 Candidate Threonine dehydratase catabolic (Threonine deaminase) K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Rta_30300 threonine dehydratase biosynthetic (Threonine deaminase)-like protein K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Rta_28230 trpA; candidate tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Rta_28220 trpB; candidate tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:rta00270]
D Rta_26770 cysE; Candidate serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Rta_19080 Cystathionine beta-lyase (Beta-cystathionase)-like protein K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Rta_01340 metH; Candidate Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Rta_01390 metH; Candidate methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Rta_02490 metE; Candidate Methylcobalamin:homocysteine methyltransferase (Methionine synthase) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Rta_07840 metK; Candidate S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Rta_37780 S-adenosylmethionine decarboxylase-like protein K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Rta_02170 mtnN; Candidate adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D Rta_18080 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Rta_18330 aspC; Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Rta_06910 ahcY; Candidate Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Rta_15450 lysC; candidate aspartokinase (Aspartate kinase) K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Rta_28180 asd; candidate aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Rta_24040 thrA; Candidate homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Rta_38050 metX; Homoserine transacetylase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D Rta_14560 candidate O-acetylhomoserine (Thiol)-lyase (O-acetylhomoserine sulfhydrylase) K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D Rta_10700 cystathionine gamma-synthase (O-succinylhomoserine (Thiol)-lyase)-like protein K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D Rta_01870 bcat; Candidate Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Rta_27580 gshA; Candidate gamma-glutamylcysteine synthetase (glutamate--cysteine ligase) K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D Rta_02410 Conserved hypothetical protein K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D Rta_02450 gshB; Candidate glutathione synthetase (glutathione synthase) K01920 gshB; glutathione synthase [EC:6.3.2.3]
D Rta_29290 aatA; candidate aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rta_13050 3-mercaptopyruvate sulfurtransferase (Rhodanese-like protein)-like protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Rta_18290 1-aminocyclopropane-1-carboxylate deaminase-like protein K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D Rta_28060 Candidate malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rta_27290 dcyD; Candidate D-cysteine desulfhydrase K17950 cuyA; L-cysteate sulfo-lyase [EC:4.4.1.25]
D Rta_31490 cysM; O-acetylserine (Thiol)-lyase K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D Rta_13940 D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_11230 D-3-phosphoglycerate dehydrogenase (Phosphoglycerate dehydrogenase)-like protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_16870 serA; candidate D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_21540 D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_22020 D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_27970 serC; Candidate phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:rta00280]
D Rta_01870 bcat; Candidate Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Rta_10480 bkdA1; Candidate 2-oxoisovalerate dehydrogenase, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D Rta_10490 bkdA2; Candidate 2-oxoisovalerate dehydrogenase, beta subunit K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D Rta_10500 bkdB; Candidate Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D Rta_18700 Candidate dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_18810 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_10510 lpd; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_05720 Unsaturated acyl-CoA reductaseButyryl dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D Rta_06620 Candidate Long chain acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rta_14140 Butyryl-CoA dehydrogenase (Short-chain-acyl-CoA dehydrogenase)-like protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rta_14210 acyl-CoA dehydrogenase-like protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rta_16630 acyl-CoA dehydrogenase-like protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rta_18160 Butyryl-CoA dehydrogenase (Short-chain-acyl-CoA dehydrogenase)-like protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rta_22080 Acyl dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rta_05640 Candidate Isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
D Rta_34370 Unsaturated acyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rta_09150 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Rta_18270 accA; Candidate Acetyl or propionyl-CoA carboxylase subunit K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3]
D Rta_18250 candidate propionyl-CoA carboxylase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D Rta_18230 candidate methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Rta_04750 2-hydroxy-3-oxopropionate reductase-like protein K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D Rta_05920 3-hydroxyisobutyrate dehydrogenase-like protein K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D Rta_02980 Candidate NAD-dependent aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Rta_23090 Aldehyde dehydrogenase (NAD+)-like protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rta_16200 long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase)-like protein K18661 matB; malonyl-CoA/methylmalonyl-CoA synthetase [EC:6.2.1.76 6.2.1.-]
D Rta_36600 Beta-alanine--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D Rta_06650 Candidate Acetyl/propionyl-CoA carboxylase, alpha subunit K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
D Rta_06610 Candidate Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D Rta_06630 Unsaturated acyl-CoA hydratase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D Rta_14260 hydroxymethylglutaryl-CoA lyase (3-hydroxy-3-methylglutarate-CoA lyase)-like protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Rta_06670 Candidate Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Rta_21710 hydroxymethylglutaryl-CoA lyase (HMG-CoA lyase)-like protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Rta_14810 candidate succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (Succinyl CoA:3-oxoacid CoA-transferase) K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D Rta_14820 candidate succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (Succinyl CoA:3-oxoacid CoA-transferase) K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D Rta_00980 Candidate acetoacetate--CoA ligase (Acetoacetyl-CoA synthetase) K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D Rta_18100 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_05680 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_20040 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rta00290]
D Rta_35300 ilvA; Candidate threonine dehydratase biosynthetic (Threonine deaminase) K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Rta_05340 threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Rta_01290 Candidate Threonine dehydratase catabolic (Threonine deaminase) K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Rta_30300 threonine dehydratase biosynthetic (Threonine deaminase)-like protein K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Rta_18460 leuC; Alpha-IPM isomerase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Rta_15480 leuC; Alpha-IPM isomerase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Rta_28150 leuC; candidate 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Rta_29310 leuC; Alpha-IPM isomerase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Rta_21660 leuC; Alpha-IPM isomerase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Rta_18450 leuD; Alpha-IPM isomerase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Rta_15475 leuD; Alpha-IPM isomerase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Rta_28160 leuD; candidate 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Rta_29300 leuD; Alpha-IPM isomerase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Rta_21650 leuD; Alpha-IPM isomerase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Rta_28170 leuB; candidate 3-isopropylmalate dehydrogenase (Beta-IPM dehydrogenase) K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D Rta_15910 3-isopropylmalate dehydrogenase (Beta-IPM dehydrogenase)-like protein K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D Rta_14300 acetolactate synthase large subunit (Acetohydroxy-acid synthase large subunit)-like protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rta_16710 Acetohydroxy-acid synthase small subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rta_22960 ilvI; candidate acetolactate synthase large subunit (Acetohydroxy-acid synthase large subunit) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rta_23720 acetolactate synthase large subunit (Acetohydroxy-acid synthase large subunit)-like protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rta_22950 ilvH; candidate acetolactate synthase small subunit (Acetohydroxy-acid synthase small subunit) K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Rta_22940 ilvC; Alpha-keto-beta-hydroxylacil reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Rta_16150 ilvD; candidate dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Rta_01750 ilvD; Candidate Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Rta_01870 bcat; Candidate Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Rta_24050 Transaminase A K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Rta_22910 leuA1; Alpha-IPM synthetase 1 K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Rta_22920 leuA; Alpha-IPM synthetase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:rta00300]
D Rta_24040 thrA; Candidate homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Rta_15450 lysC; candidate aspartokinase (Aspartate kinase) K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Rta_28180 asd; candidate aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Rta_25700 dapA; Candidate dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Rta_07370 dapA; Candidate dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Rta_21560 dihydrodipicolinate synthase-like protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Rta_02280 dapB; Candidate Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D Rta_20990 dapD; Tetrahydropicolinate succinylase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D Rta_27880 Candidate acetylornithine aminotransferase (acetylornithine transaminase) K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Rta_20980 aminotransferases-like protein K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D Rta_21010 dapE; Candidate succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Rta_32670 N-acetylornithinase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Rta_09500 dapF; Candidate Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Rta_07930 lysA; Candidate Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Rta_05390 aminotransferase-like protein K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D Rta_16800 aminotransferases-like protein K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D Rta_09640 murE; Candidate UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Rta_09660 murF; Candidate UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:rta00310]
D Rta_18800 sucB; Dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Rta_18700 Candidate dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_18810 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_10510 lpd; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_18180 gcdH; Candidate glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Rta_04870 gcdH; Candidate glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Rta_34370 Unsaturated acyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rta_18100 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_05680 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_20040 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_11430 gabD; candidate succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Rta_03420 Conserved hypothetical protein K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-]
D Rta_03530 dat; Candidate D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Rta_32100 ornithine cyclodeaminase-like protein K19743 lhpI; 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] [EC:1.5.1.1]
D Rta_23090 Aldehyde dehydrogenase (NAD+)-like protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:rta00220]
D Rta_27890 Candidate ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D Rta_10600 argG; candidate argininosuccinate synthase (Citrulline--aspartate ligase) K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Rta_28770 argH; candidate argininosuccinate lyase (Arginosuccinase) K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Rta_04320 Candidate Arginase K01476 rocF; arginase [EC:3.5.3.1]
D Rta_32870 ureC; candidate urease alpha subunit (Urea amidohydrolase) K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D Rta_32860 ureB; candidate urease beta subunit (Urea amidohydrolase) K01429 ureB; urease subunit beta [EC:3.5.1.5]
D Rta_32840 ureA; candidate urease gamma subunit (Urea amidohydrolase gamma subunit) K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D Rta_06400 Candidate glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D Rta_14420 glnA; candidate glutamine synthetase (Glutamate--ammonia ligase) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_17990 glutamine synthetase (Glutamate--ammonia ligase)-like protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_37590 glutamine synthetase (Glutamate--ammonia ligase)-like protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_17600 carB; candidate carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthase (ammonia)) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Rta_17590 carA; candidate carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate synthase (glutamine-hydrolyzing)) K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Rta_06080 gdhA; Candidate NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Rta_29290 aatA; candidate aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rta_24050 Transaminase A K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Rta_20430 argA; candidate amino-acid acetyltransferase (N-acetylglutamate synthase) K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D Rta_10160 argJ; Ornithine transacetylase; amino-acid acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D Rta_08920 argB; Candidate Acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D Rta_18310 N-acetyl-gamma-glutamyl-phosphate reductase (N-acetyl-glutamate semialdehyde dehydrogenase)-like protein K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D Rta_37430 N-acetyl-gamma-glutamyl-phosphate reductase (N-acetyl-glutamate semialdehyde dehydrogenase)-like protein K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D Rta_27880 Candidate acetylornithine aminotransferase (acetylornithine transaminase) K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Rta_08560 argE; Candidate Acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:rta00330]
D Rta_05250 creatinine amidohydrolase (Creatininase)-like protein K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10]
D Rta_21350 codA; Candidate cytosine deaminase (Cytosine aminohydrolase) K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D Rta_19500 arginine/lysine/ornithine decarboxylases-like protein K01584 adiA; arginine decarboxylase [EC:4.1.1.19]
D Rta_37780 S-adenosylmethionine decarboxylase-like protein K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Rta_23090 Aldehyde dehydrogenase (NAD+)-like protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rta_25640 spermidine N(1)-acetyltransferase (Diamine acetyltransferase)-like protein K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D Rta_04320 Candidate Arginase K01476 rocF; arginase [EC:3.5.3.1]
D Rta_36230 proC; Candidate pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D Rta_04440 putA; Candidate bifunctional putA protein : proline dehydrogenase, delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D Rta_29090 proB; candidate glutamate 5-kinase (Gamma-glutamyl kinase) K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Rta_02370 proA; Candidate Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D Rta_28970 conserved hypothetical protein K00472 P4HA; prolyl 4-hydroxylase [EC:1.14.11.2]
D Rta_29290 aatA; candidate aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rta_03530 dat; Candidate D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Rta_32100 ornithine cyclodeaminase-like protein K19743 lhpI; 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] [EC:1.5.1.1]
C 00340 Histidine metabolism [PATH:rta00340]
D Rta_08220 hisG; Candidate ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D Rta_19040 hisZ; Candidate ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D Rta_08310 hisF; Candidate Phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D Rta_08300 hisI; Candidate Phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D Rta_08270 hisA; Candidate 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D Rta_08260 hisH; Candidate Imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D Rta_08290 hisF; Candidate Imidazole glycerol phosphate synthase subunit hisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D Rta_08250 hisB; Candidate Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D Rta_08240 hisC; Candidate Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rta_16440 Imidazole acetol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rta_08230 hisD; Candidate Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D Rta_23090 Aldehyde dehydrogenase (NAD+)-like protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rta_11990 conserved hypothetical protein K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44]
C 00350 Tyrosine metabolism [PATH:rta00350]
D Rta_29290 aatA; candidate aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rta_08240 hisC; Candidate Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rta_16440 Imidazole acetol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rta_18330 aspC; Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Rta_05500 Candidate 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D Rta_18070 candidate maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D Rta_21750 Candidate maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D Rta_36540 Conserved hypothetical protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D Rta_01030 adhC; Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rta_01070 hypothetical protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rta_01790 hpcB; Candidate 3,4-dihydroxyphenylacetate 2,3-dioxygenase K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15]
D Rta_01800 hpcC; Candidate 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60]
D Rta_24750 Candidate 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase K10219 ligC; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase [EC:1.1.1.312]
D Rta_01780 5-carboxymethyl-2-hydroxymuconate delta-isomerase-like protein K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
D Rta_01810 Candidate 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D Rta_01820 Candidate 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D Rta_01770 Candidate OHED hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]
D Rta_01760 Candidate 4-hydroxy-2-oxovalerate aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D Rta_11430 gabD; candidate succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Rta_17930 gentisate 1,2-dioxygenase-like protein K00450 E1.13.11.4; gentisate 1,2-dioxygenase [EC:1.13.11.4]
D Rta_17920 conserved hypothetical protein K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20]
D Rta_08970 Malate/L-lactate dehydrogenase-like protein K13574 hcxB; hydroxycarboxylate dehydrogenase B [EC:1.1.1.237 1.1.1.-]
C 00360 Phenylalanine metabolism [PATH:rta00360]
D Rta_05490 phhA; Candidate phenylalanine 4-monooxygenase (Phenylalanine-4-hydroxylase) K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D Rta_34340 paaK; candidate phenylacetate-coenzyme A ligase (Phenylacetyl-CoA ligase) K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D Rta_34350 paaI; candidate phenylacetic acid degradation protein K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-]
D Rta_06990 paaA; Candidate Phenylacetic acid degradation protein K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149]
D Rta_06980 paaB; Candidate Phenylacetic acid degradation protein K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB
D Rta_06970 paaC; Candidate Phenylacetic acid degradation protein K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]
D Rta_06960 paaD; Candidate Phenylacetic acid degradation protein K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD
D Rta_06950 Ferredoxin--NAD(+) reductase-like protein K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
D Rta_34360 Unsaturated acyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D Rta_34370 Unsaturated acyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rta_22040 3-hydroxybutyryl-CoA dehydrogenase (Beta-hydroxybutyryl-CoA dehydrogenase)-like protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D Rta_29290 aatA; candidate aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rta_08240 hisC; Candidate Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rta_16440 Imidazole acetol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rta_18330 aspC; Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Rta_12070 conserved hypothetical protein K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-]
D Rta_05500 Candidate 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D Rta_17410 dadA; candidate D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D Rta_01190 dadA; Candidate D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D Rta_03530 dat; Candidate D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Rta_08970 Malate/L-lactate dehydrogenase-like protein K13574 hcxB; hydroxycarboxylate dehydrogenase B [EC:1.1.1.237 1.1.1.-]
D Rta_04130 katG; Candidate hydroperoxidase I K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D Rta_31330 pentachlorophenol 4-monooxygenase (Pentachlorophenol hydroxylase)-like protein K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127]
D Rta_01740 Pentachlorophenol 4-monooxygenase-like protein K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127]
D Rta_11780 2-keto-4-pentenoate hydratase-like protein K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00380 Tryptophan metabolism [PATH:rta00380]
D Rta_27930 Vermilion protein K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11]
D Rta_12730 conserved hypothetical protein K01432 AFMID; arylformamidase [EC:3.5.1.9]
D Rta_02350 Candidate Esterase/lipase K01432 AFMID; arylformamidase [EC:3.5.1.9]
D Rta_27910 Conserved hypothetical protein K07130 kynB; arylformamidase [EC:3.5.1.9]
D Rta_27920 kynureninase (L-kynurenine hydrolase)-like protein K01556 KYNU; kynureninase [EC:3.7.1.3]
D Rta_02710 Conserved hypothetical protein K03392 ACMSD; aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45]
D Rta_18800 sucB; Dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Rta_18700 Candidate dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_18810 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_10510 lpd; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_18180 gcdH; Candidate glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Rta_04870 gcdH; Candidate glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Rta_34370 Unsaturated acyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rta_18100 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_05680 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_20040 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_23090 Aldehyde dehydrogenase (NAD+)-like protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rta_35880 katE; Candidate hydroperoxidase II K03781 katE; catalase [EC:1.11.1.6]
D Rta_33070 katE; Candidate hydroperoxidase II K03781 katE; catalase [EC:1.11.1.6]
D Rta_20230 katE; Candidate hydroperoxidase II K03781 katE; catalase [EC:1.11.1.6]
D Rta_06380 Hydroxyperoxidase II-like protein K03781 katE; catalase [EC:1.11.1.6]
D Rta_04130 katG; Candidate hydroperoxidase I K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rta00400]
D Rta_09930 aroG; candidate phospho-2-dehydro-3-deoxyheptonate aldolase (phospho-2-keto-3-deoxyheptonate aldolase) K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Rta_08030 aroB; Candidate 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D Rta_09280 aroD; Candidate 3-dehydroquinate dehydratase K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D Rta_09870 candidate shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D Rta_08020 aroK; Candidate shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D Rta_13650 Deoxycytidine kinase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D Rta_14580 aroC; candidate chorismate synthase (5-enolpyruvylshikimate-3-phosphate phospholyase) K01736 aroC; chorismate synthase [EC:4.2.3.5]
D Rta_35840 trpE; Candidate anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Rta_35830 trpG; Candidate anthranilate synthase component II (Glutamine amido-transferase) K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Rta_35800 trpD1; Candidate anthranilate phosphoribosyltransferase 1 K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D Rta_28210 trpF; candidate N-(5 -phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D Rta_35790 trpC; Candidate indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D Rta_28230 trpA; candidate tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Rta_28220 trpB; candidate tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Rta_13670 candidate bifunctional protein: chorismate mutase; prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D Rta_13660 prephenate dehydrogenase-like protein K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Rta_29290 aatA; candidate aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rta_08240 hisC; Candidate Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rta_16440 Imidazole acetol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rta_18330 aspC; Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Rta_05490 phhA; Candidate phenylalanine 4-monooxygenase (Phenylalanine-4-hydroxylase) K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:rta00410]
D Rta_23090 Aldehyde dehydrogenase (NAD+)-like protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rta_32660 N-carbamoyl-L-amino-acid hydrolase-like protein K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D Rta_36600 Beta-alanine--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D Rta_34370 Unsaturated acyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rta_05720 Unsaturated acyl-CoA reductaseButyryl dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D Rta_16180 malonyl-CoA decarboxylase (Malonyl-CoA carboxy-lyase)-like protein K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9]
D Rta_02980 Candidate NAD-dependent aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism
D Rta_04610 ggt; Glutamyl transpeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rta_16680 gamma-glutamyltranspeptidase precursor (Gamma-glutamyltransferase)-like protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rta_24680 gamma-glutamyltranspeptidase precursor-like protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rta_20280 gamma-glutamyltranspeptidase precursor (Gamma-glutamyltransferase)-like protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
C 00440 Phosphonate and phosphinate metabolism [PATH:rta00440]
D Rta_22460 phnI; Candidate PhnI protein K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37]
D Rta_22480 phnG; Candidate PhnG protein K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37]
D Rta_22470 phnH; Candidate PhnH protein K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37]
D Rta_22430 candidate ATP-binding component of an ABC transport system K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37]
D Rta_22420 phnM; Candidate PhnM protein K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63]
D Rta_22450 phnJ; Candidate PhnJ protein K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1]
C 00450 Selenocompound metabolism [PATH:rta00450]
D Rta_19080 Cystathionine beta-lyase (Beta-cystathionase)-like protein K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Rta_01340 metH; Candidate Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Rta_01390 metH; Candidate methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Rta_02490 metE; Candidate Methylcobalamin:homocysteine methyltransferase (Methionine synthase) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Rta_11850 disulfide oxidoreductase-like protein K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Rta_13470 bifunctional protein : sensor, cNMP-binding domain-like protein K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Rta_22660 disulfide oxidoreductase-like protein K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Rta_31670 trxB; Candidate thioredoxin reductase (NADPH) K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Rta_22640 cysN; ATP-sulfurylase large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Rta_22630 cysD; ATP-sulfurylase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Rta_33600 selD; Selenium donor protein K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D Rta_30620 metG; candidate methionyl-tRNA synthetase (Methionine--tRNA ligase) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:rta00460]
D Rta_06220 candidate b-glucosidase, Glycoside Hydrolase Family 3 K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Rta_04610 ggt; Glutamyl transpeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rta_16680 gamma-glutamyltranspeptidase precursor (Gamma-glutamyltransferase)-like protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rta_24680 gamma-glutamyltranspeptidase precursor-like protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rta_20280 gamma-glutamyltranspeptidase precursor (Gamma-glutamyltransferase)-like protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rta_01470 L-asparaginase-like protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Rta_21980 L-asparaginase (L-asparagine amidohydrolase)-like protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Rta_15320 glyA; candidate serine hydroxymethyltransferase (Serine methylase) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:rta00470]
D Rta_01610 alr2; Candidate Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Rta_03530 dat; Candidate D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Rta_09720 ddlA; Candidate D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Rta_06400 Candidate glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D Rta_09680 murD; Candidate UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase (D-glutamic acid adding enzyme) K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Rta_27330 aspartate racemase-like protein K01779 racD; aspartate racemase [EC:5.1.1.13]
D Rta_14030 aspartate racemase-like protein K01779 racD; aspartate racemase [EC:5.1.1.13]
D Rta_07170 Conserved hypothetical protein K19967 dta; D-threonine aldolase [EC:4.1.2.42]
D Rta_18290 1-aminocyclopropane-1-carboxylate deaminase-like protein K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D Rta_09500 dapF; Candidate Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Rta_07930 lysA; Candidate Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Rta_17410 dadA; candidate D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D Rta_01190 dadA; Candidate D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:rta00480]
D Rta_04610 ggt; Glutamyl transpeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rta_16680 gamma-glutamyltranspeptidase precursor (Gamma-glutamyltransferase)-like protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rta_24680 gamma-glutamyltranspeptidase precursor-like protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rta_20280 gamma-glutamyltranspeptidase precursor (Gamma-glutamyltransferase)-like protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rta_11330 Candidate cation transport protein K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7]
D Rta_13560 candidate 5-oxoprolinase (5-oxo-L-prolinase) K01469 OPLAH; 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9]
D Rta_35950 Candidate carboxylate-amine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D Rta_27580 gshA; Candidate gamma-glutamylcysteine synthetase (glutamate--cysteine ligase) K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D Rta_02410 Conserved hypothetical protein K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D Rta_02450 gshB; Candidate glutathione synthetase (glutathione synthase) K01920 gshB; glutathione synthase [EC:6.3.2.3]
D Rta_19420 pepA; Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Rta_10390 pepN; candidate aminopeptidase N (membrane alanyl aminopeptidase) K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Rta_17050 glutathione S-transferases-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rta_00640 gst; Candidate glutathione S-transferase (Glutathione transferase) K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rta_37240 glutathione S-transferase-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rta_03110 Glutathione S-transferase (Glutathione transferase)-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rta_21500 glutathione S-transferase (Glutathione transferase)-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rta_37490 glutathione S-transferase-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rta_07380 Glutathione S-transferase (Glutathione transferase)-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rta_05380 yliJ; glutathione S-transferase (glutathione S-alkyltransferase)-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rta_21850 icdA; Candidate isocitrate dehydrogenase [NADP] (Oxalosuccinate decarboxylase) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Rta_05240 tkrA; Candidate Gluconate 2-dehydrogenase (2-ketogluconate reductase) K00032 E1.1.1.43; phosphogluconate 2-dehydrogenase [EC:1.1.1.43]
D Rta_35180 zwf; Candidate glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Rta_01585 Candidate Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D Rta_37160 Candidate glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D Rta_03360 Conserved hypothetical protein K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:rta00540]
D Rta_17550 lpxA; Candidate Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D Rta_09760 candidate UDP-3-0-acyl N-acetylglucosamine deacetylase (LpxC), Carbohydrate Esterase Family 11 K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D Rta_17530 lpxD; Candidate UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D Rta_15360 lpxH; Candidate UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D Rta_17560 lipid-A-disaccharide synthase, Glycosyltransferase Family 19-like protein K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D Rta_21920 lpxK; Candidate Tetraacyldisaccharide 4-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D Rta_38160 kdsD; Candidate Arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D Rta_25800 kdsA; Candidate 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D Rta_21940 kdsB; Candidate 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D Rta_10980 candidate KDO transferase, Glycosyltransferase Family 30 K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D Rta_07850 Acyltransferases-like protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D Rta_07860 Acyltransferases-like protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D Rta_00440 Conserved hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D Rta_06570 Hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D Rta_04800 Candidate Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D Rta_13600 ADP-heptose synthase-like protein K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D Rta_05570 histidinol phosphatase-like protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D Rta_37130 Candidate Aut protein (necessary for autotrophic growth) K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D Rta_13590 hldD; candidate ADP-L-glycero-D-manno-heptose-6-epimerase (ADP-glyceromanno-heptose 6-epimerase) K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D Rta_10970 candidate LPS heptosyltransferase, Glycosyltransferase Family 9 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D Rta_01890 Candidate LPS heptosyltransferase, Glycosyltransferase Family 9 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D Rta_10890 candidate membrane protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D Rta_21120 candidate membrane protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rta00541]
D Rta_31460 galU; candidate UTP--glucose-1-phosphate uridylyltransferase (UDP-glucose pyrophosphorylase) K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Rta_28270 galE; UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Rta_21100 galE; UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Rta_05060 glf; candidate UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D Rta_16110 ugd; candidate UDP-glucose 6-dehydrogenase (UDP-Glc dehydrogenase) K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Rta_08700 rmlA1; dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Rta_08680 rfbB; candidate dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Rta_08710 rfbC; dTDP-L-rhamnose synthetase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Rta_24840 rfbC; dTDP-L-rhamnose synthetase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Rta_08690 rfbD; Candidate dTDP-4-dehydrorhamnose reductase (dTDP-4-keto-L-rhamnose reductase) K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Rta_05050 candidate b-glycosidase, Glycoside Hydrolase Family 1 K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Rta_24830 glgC; Candidate glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase) K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D Rta_31550 Ferredoxin--NAD(+) reductase-like protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D Rta_16030 CDP-tyvelose-2-epimerase (CDP-paratose 2-epimerase)-like protein K12454 rfbE; CDP-paratose 2-epimerase [EC:5.1.3.10]
D Rta_10960 phosphomannomutase/phosphoglucomutase-like protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Rta_06865 Phosphomannomutase/phosphoglucomutase-like protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Rta_07530 glmU; Candidate Bifunctional glmU protein K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:rta00550]
D Rta_08210 murA; Candidate UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Rta_10580 murB; candidate UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Rta_09710 murC; Candidate UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Rta_09680 murD; Candidate UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase (D-glutamic acid adding enzyme) K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Rta_09640 murE; Candidate UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Rta_09720 ddlA; Candidate D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Rta_09660 murF; Candidate UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Rta_17470 uppS; Undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Rta_26900 Candidate undecaprenol kinase (Bacitracin resistance protein) K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Rta_13140 bacA; Candidate bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Rta_09670 mraY; Candidate phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Rta_09700 murG; candidate undecaprenyldiphospho-muramoylpentapeptide b-N-acetylglucosaminyltransferase, Glycosyltransferase Family 28 K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Rta_09860 candidate monofunctional peptidoglycan glycosyltransferase, Glycosyltransferase Family 51 K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Rta_00530 monofunctional peptidoglycan glycosyltransferase, Glycosyltransferase Family 51-like protein K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Rta_17110 candidate bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase (candidate murein polymerase), Glycosyltransferase Family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rta_07950 candidate bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase (candidate murein polymerase), Glycosyltransferase Family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rta_03810 pbp2; Candidate cell division penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Rta_09630 ftsI; Candidate cell division penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Rta_03200 dac; Candidate penicillin-binding protein precursor (D-alanyl-D-alanine carboxypeptidase) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Rta_36700 penicillin-binding protein 4 precursor (D-alanyl-D-alanine carboxypeptidase)-like protein K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:rta00552]
D Rta_26900 Candidate undecaprenol kinase (Bacitracin resistance protein) K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Rta_13140 bacA; Candidate bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium [PATH:rta00572]
D Rta_08900 candidate b-glycosyltransferase, Glycosyltransferase Family 2 K16649 glft1; rhamnopyranosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,3/1,4-galactofuranosyltransferase [EC:2.4.1.287]
C 00543 Exopolysaccharide biosynthesis [PATH:rta00543]
D Rta_26770 cysE; Candidate serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:rta00730]
D Rta_34180 phosphomethylpyrimidine kinase (HMP-phosphate kinase)-like protein K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D Rta_22770 thiD; Candidate phosphomethylpyrimidine kinase (HMP-phosphate kinase) K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D Rta_22700 thiE; Thiamine-phosphate synthase K14153 thiDE; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3]
D Rta_18360 iscS; Candidate cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Rta_22690 thiO; Candidate thiamine biosynthesis oxidoreductase K03153 thiO; glycine oxidase [EC:1.4.3.19]
D Rta_13100 1-deoxy-D-xylulose-5-phosphate pyruvate-lyase (carboxylating) K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Rta_22670 thiG; Candidate thiazole biosynthesis protein thiG K03149 thiG; thiazole synthase [EC:2.8.1.10]
D Rta_35980 thiL; Candidate thiamine-monophosphate kinase (Thiamine-phosphate kinase) K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D Rta_12160 candidate GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Rta_21950 adk; Candidate adenylate kinase (ATP-AMP transphosphorylase) K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:rta00740]
D Rta_15210 ribAB; candidate riboflavin biosynthesis bifunctional protein : GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Rta_15230 ribD; candidate riboflavin biosynthesis bifunctional protein ribD : Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase) K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Rta_15710 hydrolases (HAD superfamily)-like protein K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D Rta_35090 ribB; Candidate 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D Rta_15200 ribH; candidate riboflavin synthase, beta chain K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D Rta_15220 ribE; candidate riboflavin synthase, alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D Rta_31780 ribF; candidate bifunctional riboflavin biosynthesis protein : Riboflavin kinase (Flavokinase); FMN adenylyltransferase (FAD pyrophosphorylase) K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D Rta_26280 ADP-ribose pyrophosphatase (ADP-ribose diphosphatase)-like protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:rta00750]
D Rta_11180 pdxH; candidate pyridoxamine 5'-phosphate oxidase (Pyridoxamine-phosphate oxidase) K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D Rta_27970 serC; Candidate phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Rta_08400 pdxA; Candidate 4-hydroxythreonine-4-phosphate dehydrogenase 2 K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D Rta_15900 4-hydroxythreonine-4-phosphate dehydrogenase (4-(phosphohydroxy)-L-threonine dehydrogenase)-like protein K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D Rta_28380 pdxJ; candidate pyridoxal phosphate biosynthetic protein K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D Rta_24010 thrC; Candidate threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:rta00760]
D Rta_30670 nadB; candidate L-aspartate oxidase (Quinolinate synthetase B) K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Rta_30690 nadA; candidate quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D Rta_30700 nadC; candidate nicotinate-nucleotide pyrophosphorylase [carboxylating] (Quinolinate phosphoribosyltransferase [decarboxylating]) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D Rta_27190 pncB; Candidate nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D Rta_35070 Conserved hypothetical protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Rta_24430 surE; Candidate acid phosphatase (Stationary-phase survival protein) K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Rta_15950 bifunctional protein : Nicotinamide-nucleotide adenylyltransferase (NAD(+) pyrophosphorylase)-like protein K13522 K13522; bifunctional NMN adenylyltransferase/nudix hydrolase [EC:2.7.7.1 3.6.1.-]
D Rta_21170 Candidate nicotinate-nucleotide adenylyltransferase (Deamido-NAD(+) pyrophosphorylase) K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D Rta_23030 nadE; Candidate NAD(+) synthase (glutamine-hydrolyzing) K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D Rta_36010 Conserved hypothetical protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D Rta_19190 NAD-dependent protein deacetylase, SIR2 family-like protein K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D Rta_33190 ppnK; Candidate inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase) K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D Rta_02100 pntA; Candidate NAD(P) transhydrogenase subunit alpha part 1 K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D Rta_02110 pntAb; Candidate NAD(P) transhydrogenase subunit alpha part2 K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D Rta_02120 pntB; Candidate NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D Rta_32550 maleate cis-trans isomerase-like protein K01799 nicE; maleate isomerase [EC:5.2.1.1]
D Rta_11430 gabD; candidate succinate-semialdehyde dehydrogenase (NADP+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:rta00770]
D Rta_14300 acetolactate synthase large subunit (Acetohydroxy-acid synthase large subunit)-like protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rta_16710 Acetohydroxy-acid synthase small subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rta_22960 ilvI; candidate acetolactate synthase large subunit (Acetohydroxy-acid synthase large subunit) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rta_23720 acetolactate synthase large subunit (Acetohydroxy-acid synthase large subunit)-like protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rta_22950 ilvH; candidate acetolactate synthase small subunit (Acetohydroxy-acid synthase small subunit) K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Rta_22940 ilvC; Alpha-keto-beta-hydroxylacil reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Rta_16150 ilvD; candidate dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Rta_01750 ilvD; Candidate Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Rta_01700 panE; Candidate 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D Rta_08530 Bvg accessory factor-like protein K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D Rta_25780 coaBC; Candidate coenzyme A biosynthesis bifunctional protein (DNA/pantothenate metabolism flavoprotein) : Phosphopantothenoylcysteine decarboxylase; Phosphopantothenoylcysteine synthase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D Rta_33470 coaD; Dephospho-CoA pyrophosphorylase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D Rta_29170 coaE; candidate dephospho-CoA kinase (Dephosphocoenzyme A kinase) K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D Rta_28370 acpS; 4-phosphopantetheinyltransferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D Rta_30430 phosphopantetheinyl transferases-like protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D Rta_01870 bcat; Candidate Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Rta_32660 N-carbamoyl-L-amino-acid hydrolase-like protein K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D Rta_23090 Aldehyde dehydrogenase (NAD+)-like protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:rta00780]
D Rta_33780 conserved hypothetical protein K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D Rta_02610 fabB; Candidate 3-oxoacyl-[acyl-carrier-protein] synthase I (Beta-ketoacyl-ACP synthase) K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Rta_28500 fabF; Candidate 3-oxoacyl-[acyl-carrier-protein] synthase (Beta-ketoacyl-ACP synthase) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rta_04930 3-oxoacyl-[acyl-carrier-protein] reductase-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_14330 dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_23110 dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_28520 fabG; Candidate 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_02640 3-oxoacyl-[acyl-carrier-protein] reductase-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_22710 3-oxoacyl-[acyl-carrier-protein] reductase-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_31880 dehydrogenase/reductase-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_17220 dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_17540 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases-like protein K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Rta_19510 fabI; Candidate Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D Rta_37510 birA; Candidate bifunctional protein (BirA) : transcriptional regulator (Biotin operon repressor), BirA family; Biotin--[acetyl-CoA-carboxylase] synthetase (Biotin--protein ligase) K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:rta00785]
D Rta_03510 lipB; Candidate lipoate-protein ligase B (Lipoate biosynthesis protein B) K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D Rta_03500 lipA; Candidate lipoic acid synthetase (Lipoate synthase) K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D Rta_18700 Candidate dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_18810 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_10510 lpd; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_18670 aceE; candidate pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Rta_05160 aceE; Candidate pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Rta_18680 aceF; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Rta_18790 sucA; candidate 2-oxoglutarate dehydrogenase E1 component (Alpha-ketoglutarate dehydrogenase) K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D Rta_18800 sucB; Dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Rta_10480 bkdA1; Candidate 2-oxoisovalerate dehydrogenase, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D Rta_10490 bkdA2; Candidate 2-oxoisovalerate dehydrogenase, beta subunit K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D Rta_10500 bkdB; Candidate Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D Rta_14660 gcvP; Glycine cleavage system P-protein K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D Rta_14680 gcvT; candidate aminomethyltransferase (Glycine cleavage system T protein) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Rta_14670 gcvH; candidate glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:rta00790]
D Rta_31070 GTP cyclohydrolase I-like protein K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D Rta_17200 phoD; candidate alkaline phosphatase D precursor K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D Rta_31130 nudB; candidate dATP pyrophosphohydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D Rta_07240 dihydroneopterin aldolase-like protein K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D Rta_27770 folK; 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D Rta_17740 folP; Dihydropteroate pyrophosphorylase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D Rta_14480 folA; candidate dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D Rta_10660 folC; Tetrahydrofolylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D Rta_15210 ribAB; candidate riboflavin biosynthesis bifunctional protein : GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Rta_12170 Pterin carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D Rta_05490 phhA; Candidate phenylalanine 4-monooxygenase (Phenylalanine-4-hydroxylase) K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D Rta_00120 Conserved hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Rta_28960 conserved hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D Rta_23120 moaA; Candidate molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Rta_37320 moaC; Candidate molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Rta_23970 moaE; Candidate molybdopterin converting factor subunit 2 (MPT synthase subunit 2) K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D Rta_26720 mog; Candidate molybdopterin biosynthesis mog protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Rta_23140 moeA; Candidate molybdopterin biosynthesis protein moeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Rta_23990 moeA; Candidate molybdopterin biosynthesis protein moeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Rta_11300 conserved hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D Rta_23130 mobA; Candidate molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:rta00670]
D Rta_14480 folA; candidate dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D Rta_18640 folD; candidate bifunctional protein : methylenetetrahydrofolate dehydrogenase; Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Rta_15320 glyA; candidate serine hydroxymethyltransferase (Serine methylase) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Rta_31730 purN; 5 -phosphoribosylglycinamide transformylase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Rta_34240 purH; candidate bifunctional purine biosynthesis protein : Phosphoribosylaminoimidazolecarboxamide formyltransferase; IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Rta_36890 fmt; Candidate methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Rta_14680 gcvT; candidate aminomethyltransferase (Glycine cleavage system T protein) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Rta_01340 metH; Candidate Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Rta_01390 metH; Candidate methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Rta_14490 thyA; candidate thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Rta_36630 purU; Candidate formyltetrahydrofolate deformylase (Formyl-FH(4) hydrolase) K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D Rta_06930 metF; Candidate 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Rta_07440 Conserved hypothetical protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:rta00860]
D Rta_10710 gltX; candidate glutamyl-tRNA synthetase (Glutamate--tRNA ligase) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rta_29000 hemA; candidate glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D Rta_34190 hemL; candidate glutamate-1-semialdehyde 2,1-aminomutase (Glutamate-1-semialdehyde aminotransferase) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Rta_03150 hemB; Candidate Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Rta_28680 hemC; Pre-uroporphyrinogen synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D Rta_28670 Hydroxymethylbilane hydrolyase (cyclizing) K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D Rta_05000 hemE; Candidate Uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D Rta_21180 hemF; Coprogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D Rta_03160 candidate membrane protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D Rta_15700 hemH; Heme synthetase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D Rta_28660 uroporphyrin-III C-methyltransferase (Urogen III methylase)-like protein K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D Rta_26650 Uroporphyrinogen III methylase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D Rta_33660 ctaB; candidate protoheme IX farnesyltransferase (Heme O synthase), membrane protein K02257 COX10; heme o synthase [EC:2.5.1.141]
D Rta_33670 cytochrome AA3 controlling protein, membrane protein-like protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D Rta_19390 conserved hypothetical protein K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D Rta_16380 obyrinic acid A,C-diamide synthase-like protein K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D Rta_00890 Conserved hypothetical protein K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Rta_16420 candidate COB(I)alamin adenosyltransferase (Corrinoid adenosyltransferase) K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Rta_16450 candidate cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D Rta_16430 cobalamin biosynthesis protein, membrane protein-like protein K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D Rta_12150 candidate membrane protein, distantly related to cobalamin biosynthesis protein K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D Rta_16370 bifunctional cobalamin biosynthesis protein : Cobinamide kinase; Cobinamide phosphate guanylyltransferase-like protein K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D Rta_16470 cobalamin synthase-like protein K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D Rta_35310 cobalamin synthase-like protein K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D Rta_16460 candidate Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D Rta_16480 conserved hypothetical protein K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D Rta_24210 bfr; Candidate bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rta00130]
D Rta_32470 candidate 4-hydroxybenzoyl-CoA thioesterase K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
D Rta_36240 ubiA; Candidate 4-hydroxybenzoate octaprenyltransferase (4-HB polyprenyltransferase) K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D Rta_13700 ubiG; DHHB methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D Rta_31230 ubiE; candidate Ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D Rta_35280 ubiquinone biosynthesis protein COQ7-like protein K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D Rta_00910 Conserved hypothetical protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D Rta_26690 Conserved hypothetical protein K11782 mqnA; chorismate dehydratase [EC:4.2.1.151]
D Rta_15090 flavoprotein WrbA (Trp repressor binding protein)-like protein K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D Rta_05500 Candidate 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:rta00900]
D Rta_13100 1-deoxy-D-xylulose-5-phosphate pyruvate-lyase (carboxylating) K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Rta_17490 1-deoxyxylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D Rta_17260 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (4-diphosphocytidyl-2C-methyl-D-erythritol synthase)-like protein K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D Rta_33270 4-(cytidine 5-diphospho)-2-C-methyl-D-erythritol kinase (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase)-like protein K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D Rta_17270 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase-like protein K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D Rta_18940 ispG; candidate 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D Rta_30310 ispH; candidate 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D Rta_18100 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_05680 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_20040 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_13090 Geranyltranstransferase (Farnesyl-diphosphate synthase)-like protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D Rta_29130 Trans-hexaprenyltranstransferase (All-trans-heptaprenyl-diphosphate synthase)-like protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D Rta_17470 uppS; Undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Rta_12180 candidate membrane protein, related to protease K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:rta00906]
D Rta_15730 phytoene synthase-like protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D Rta_07700 candidate phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D Rta_07710 candidate phytoene dehydrogenase (Phytoene desaturase) K10027 crtI; phytoene desaturase [EC:1.3.99.26 1.3.99.28 1.3.99.29 1.3.99.31]
D Rta_07720 candidate Lycopene cyclase K06443 lcyB; lycopene beta-cyclase [EC:5.5.1.19]
D Rta_07690 candidate beta-carotene ketolase (Beta-carotene oxygenase) K09836 crtW; beta-carotene/zeaxanthin 4-ketolase [EC:1.14.99.63 1.14.99.64]
D Rta_07680 Candidate beta-carotene hydroxylase K15746 crtZ; beta-carotene 3-hydroxylase [EC:1.14.15.24]
D Rta_07730 candidate zeaxanthin b-glucosyltransferase, Glycosyltransferase Family 1 K14596 crtX; zeaxanthin glucosyltransferase [EC:2.4.1.276]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D Rta_23090 Aldehyde dehydrogenase (NAD+)-like protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation [PATH:rta00907]
D Rta_34370 Unsaturated acyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rta_14260 hydroxymethylglutaryl-CoA lyase (3-hydroxy-3-methylglutarate-CoA lyase)-like protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Rta_06670 Candidate Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Rta_21710 hydroxymethylglutaryl-CoA lyase (HMG-CoA lyase)-like protein K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Rta_09150 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D Rta_31430 1-deoxy-D-xylulose-5-phosphate pyruvate-lyase (carboxylating) K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rta_31440 tkt; conserved hypothetical protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rta_37770 candidate transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:rta00523]
D Rta_08700 rmlA1; dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Rta_08680 rfbB; candidate dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Rta_08710 rfbC; dTDP-L-rhamnose synthetase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Rta_24840 rfbC; dTDP-L-rhamnose synthetase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Rta_08690 rfbD; Candidate dTDP-4-dehydrorhamnose reductase (dTDP-4-keto-L-rhamnose reductase) K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Rta_05050 candidate b-glycosidase, Glycoside Hydrolase Family 1 K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Rta_16040 UDP-galactose 4-epimerase K17947 wbiB; dTDP-L-rhamnose 4-epimerase [EC:5.1.3.25]
C 01054 Nonribosomal peptide structures [PATH:rta01054]
D Rta_27330 aspartate racemase-like protein K01779 racD; aspartate racemase [EC:5.1.1.13]
D Rta_14030 aspartate racemase-like protein K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics [PATH:rta01055]
D Rta_24240 Candidate hydroxyacid oxidase (Glycolate oxidase) K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46]
D Rta_08680 rfbB; candidate dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:rta00946]
D Rta_06220 candidate b-glucosidase, Glycoside Hydrolase Family 3 K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D Rta_21770 beta-lactamase precursor (Penicillinase)-like protein K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Rta_27390 bla; Cephalosporinase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Rta_21760 beta-lactamase precursor (Penicillinase)-like protein K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis [PATH:rta00332]
D Rta_29090 proB; candidate glutamate 5-kinase (Gamma-glutamyl kinase) K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Rta_02370 proA; Candidate Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:rta00261]
D Rta_24240 Candidate hydroxyacid oxidase (Glycolate oxidase) K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46]
D Rta_22640 cysN; ATP-sulfurylase large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Rta_22630 cysD; ATP-sulfurylase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Rta_15450 lysC; candidate aspartokinase (Aspartate kinase) K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Rta_28180 asd; candidate aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Rta_25700 dapA; Candidate dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Rta_07370 dapA; Candidate dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Rta_21560 dihydrodipicolinate synthase-like protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Rta_02280 dapB; Candidate Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:rta00521]
D Rta_07340 N-acetylmannosamine kinase(ManNAc kinase)-like protein K00845 glk; glucokinase [EC:2.7.1.2]
D Rta_16050 conserved hypothetical protein K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D Rta_26790 suhB; Candidate inositol-1-monophosphatase (Inositol-1-phosphatase) K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Rta_08700 rmlA1; dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Rta_08680 rfbB; candidate dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Rta_08710 rfbC; dTDP-L-rhamnose synthetase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Rta_24840 rfbC; dTDP-L-rhamnose synthetase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Rta_08690 rfbD; Candidate dTDP-4-dehydrorhamnose reductase (dTDP-4-keto-L-rhamnose reductase) K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Rta_05050 candidate b-glycosidase, Glycoside Hydrolase Family 1 K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D Rta_07340 N-acetylmannosamine kinase(ManNAc kinase)-like protein K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:rta00525]
D Rta_08700 rmlA1; dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Rta_08680 rfbB; candidate dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:rta00401]
D Rta_13660 prephenate dehydrogenase-like protein K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Rta_29290 aatA; candidate aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rta_08240 hisC; Candidate Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rta_16440 Imidazole acetol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rta_18330 aspC; Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis [PATH:rta00405]
D Rta_23930 salicylate hydroxylase (Salicylate 1-monooxygenase)-like protein K20940 phzS; 5-methylphenazine-1-carboxylate 1-monooxygenase [EC:1.14.13.218]
D Rta_35840 trpE; Candidate anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Rta_35830 trpG; Candidate anthranilate synthase component II (Glutamine amido-transferase) K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D Rta_28530 fabD; Candidate [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Rta_04930 3-oxoacyl-[acyl-carrier-protein] reductase-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_14330 dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_23110 dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_28520 fabG; Candidate 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_02640 3-oxoacyl-[acyl-carrier-protein] reductase-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_22710 3-oxoacyl-[acyl-carrier-protein] reductase-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_31880 dehydrogenase/reductase-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_17220 dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_19510 fabI; Candidate Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D Rta_28510 acpP; Candidate Acyl-carrier-protein K02078 acpP; acyl carrier protein
D Rta_02520 Candidate Acyl carrier protein K02078 acpP; acyl carrier protein
D Rta_04950 acyl carrier protein-like protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:rta00999]
D Rta_07840 metK; Candidate S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Rta_09870 candidate shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D Rta_06220 candidate b-glucosidase, Glycoside Hydrolase Family 3 K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:rta00362]
D Rta_01150 beta-ketoadipate enol-lactone hydrolase (3-oxoadipate enol-lactonase)-like protein K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D Rta_33900 pcaI; candidate 3-oxoadipate CoA-transferase subunit A (Beta-ketoadipate:succinyl-CoA transferase subunit A) K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
D Rta_33890 pcaJ; candidate 3-oxoadipate CoA-transferase subunit B (Beta-ketoadipate:succinyl-CoA transferase subunit B) K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6]
D Rta_09150 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Rta_33880 Acetyl-CoA C-acetyltransferase-like protein K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
D Rta_11780 2-keto-4-pentenoate hydratase-like protein K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D Rta_12870 tautomerase-like protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D Rta_12030 protocatechuate 3,4-dioxygenase, beta subunit-like protein K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
D Rta_14780 4-carboxymuconolactone decarboxylase-like protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D Rta_01930 Conserved hypothetical protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D Rta_04170 Conserved hypothetical protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D Rta_24770 Candidate protocatechuate 4,5-dioxygenase alpha chain K04100 ligA; protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
D Rta_24760 Candidate protocatechuate 4,5-dioxygenase beta chain K04101 ligB; protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8]
D Rta_24750 Candidate 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase K10219 ligC; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase [EC:1.1.1.312]
D Rta_24780 Candidate 2-pyrone-4,6-dicarboxylate lactonase K10221 ligI; 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57]
D Rta_24800 Candidate 4-oxalomesaconate hydratase K10220 ligJ; 4-oxalmesaconate hydratase [EC:4.2.1.83]
D Rta_24790 Candidate 4-Hydroxy-4-methyl-2-oxoglutarate aldolase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D Rta_13950 conserved hypothetical protein K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D Rta_11240 conserved hypothetical protein K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D Rta_29370 demethylmenaquinone methyltransferase-like protein K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D Rta_17980 ferrodoxin-like protein K04755 fdx; ferredoxin, 2Fe-2S
D Rta_18410 fdx; Candidate ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D Rta_20550 pobA; candidate P-hydroxybenzoate hydroxylase (4-hydroxybenzoate 3-monooxygenase) K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
D Rta_17950 salicylate hydroxylase (Salicylate 1-monooxygenase)-like protein K22270 nagX; 3-hydroxybenzoate 6-monooxygenase [EC:1.14.13.24]
D Rta_32470 candidate 4-hydroxybenzoyl-CoA thioesterase K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
D Rta_22340 Candidate benzoate-CoA ligase K04110 badA; benzoate-CoA ligase [EC:6.2.1.25]
D Rta_09140 Unsaturated acyl-CoA hydratase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Rta_20050 3-hydroxybutyryl-CoA epimerase-like protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Rta_18180 gcdH; Candidate glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Rta_04870 gcdH; Candidate glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Rta_34370 Unsaturated acyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rta_22040 3-hydroxybutyryl-CoA dehydrogenase (Beta-hydroxybutyryl-CoA dehydrogenase)-like protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D Rta_18100 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_05680 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_20040 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_22300 Candidate benzoyl-CoA oxygenase component B K15512 boxB; benzoyl-CoA 2,3-epoxidase subunit B [EC:1.14.13.208]
D Rta_22310 Unsaturated acyl-CoA hydratase K15513 boxC; benzoyl-CoA-dihydrodiol lyase [EC:4.1.2.44]
C 00627 Aminobenzoate degradation [PATH:rta00627]
D Rta_37660 conserved hypothetical protein K10215 ethA; monooxygenase [EC:1.14.13.-]
D Rta_22340 Candidate benzoate-CoA ligase K04110 badA; benzoate-CoA ligase [EC:6.2.1.25]
D Rta_00130 Candidate Mandelate racemase K01781 mdlA; mandelate racemase [EC:5.1.2.2]
D Rta_35050 candidate 2-aminobenzoate-CoA ligase K08295 abmG; 2-aminobenzoate-CoA ligase [EC:6.2.1.32]
D Rta_18140 oxidoreductases-like protein K09461 E1.14.13.40; anthraniloyl-CoA monooxygenase [EC:1.14.13.40]
D Rta_24770 Candidate protocatechuate 4,5-dioxygenase alpha chain K04100 ligA; protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
D Rta_24760 Candidate protocatechuate 4,5-dioxygenase beta chain K04101 ligB; protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8]
D Rta_24750 Candidate 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase K10219 ligC; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase [EC:1.1.1.312]
D Rta_24780 Candidate 2-pyrone-4,6-dicarboxylate lactonase K10221 ligI; 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57]
D Rta_34370 Unsaturated acyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
C 00364 Fluorobenzoate degradation [PATH:rta00364]
D Rta_03090 Candidate carboxymethylenebutenolidase (dienelactone hydrolase) K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D Rta_12880 candidate carboxymethylenebutenolidase (Dienelactone hydrolase) K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:rta00625]
D Rta_19770 candidate bifunctional protein : haloalkane dehalogenase; tRNA-specific adenosine deaminase K01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5]
D Rta_01030 adhC; Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rta_01070 hypothetical protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rta_23090 Aldehyde dehydrogenase (NAD+)-like protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rta_24480 Candidate haloacetate dehalogenase H-1 K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3]
D Rta_02880 Candidate Haloacetate dehalogenase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3]
D Rta_03970 (S)-2-haloacid dehalogenase-like protein K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:rta00361]
D Rta_19770 candidate bifunctional protein : haloalkane dehalogenase; tRNA-specific adenosine deaminase K01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5]
D Rta_03090 Candidate carboxymethylenebutenolidase (dienelactone hydrolase) K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D Rta_12880 candidate carboxymethylenebutenolidase (Dienelactone hydrolase) K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D Rta_03970 (S)-2-haloacid dehalogenase-like protein K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D Rta_24480 Candidate haloacetate dehalogenase H-1 K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3]
D Rta_02880 Candidate Haloacetate dehalogenase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3]
C 00623 Toluene degradation [PATH:rta00623]
D Rta_03090 Candidate carboxymethylenebutenolidase (dienelactone hydrolase) K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D Rta_12880 candidate carboxymethylenebutenolidase (Dienelactone hydrolase) K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation [PATH:rta00622]
D Rta_12870 tautomerase-like protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D Rta_11780 2-keto-4-pentenoate hydratase-like protein K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00633 Nitrotoluene degradation [PATH:rta00633]
D Rta_00620 Candidate flavoprotein NADH-dependent oxidoreductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D Rta_09150 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:rta00643]
D Rta_18070 candidate maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D Rta_21750 Candidate maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D Rta_36540 Conserved hypothetical protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
C 00791 Atrazine degradation
D Rta_32870 ureC; candidate urease alpha subunit (Urea amidohydrolase) K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D Rta_32860 ureB; candidate urease beta subunit (Urea amidohydrolase) K01429 ureB; urease subunit beta [EC:3.5.1.5]
D Rta_32840 ureA; candidate urease gamma subunit (Urea amidohydrolase gamma subunit) K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:rta00930]
D Rta_17730 gluconolactonase precursor-like protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D Rta_34370 Unsaturated acyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
C 00363 Bisphenol degradation
D Rta_11270 conserved hypothetical protein K05913 dad; 2,4'-dihydroxyacetophenone dioxygenase [EC:1.13.11.41]
C 00621 Dioxin degradation [PATH:rta00621]
D Rta_12870 tautomerase-like protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D Rta_11780 2-keto-4-pentenoate hydratase-like protein K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00626 Naphthalene degradation [PATH:rta00626]
D Rta_25990 Candidate salicylate-5-hydroxylase large oxygenase component K18242 nagG; salicylate 5-hydroxylase large subunit [EC:1.14.13.172]
D Rta_25980 Candidate salicylate-5-hydroxylase small oxygenase component K18243 nagH; salicylate 5-hydroxylase small subunit [EC:1.14.13.172]
D Rta_01030 adhC; Glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rta_01070 hypothetical protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation [PATH:rta00624]
D Rta_18000 phthalate 4,5-dioxygenase (Phthalate dioxygenase)-like protein K18068 pht3; phthalate 4,5-dioxygenase [EC:1.14.12.7]
D Rta_16750 candidate terephthalate 1,2-dioxygenase oxygenase component large subunit K18074 tphA2; terephthalate 1,2-dioxygenase oxygenase component alpha subunit [EC:1.14.12.15]
D Rta_16740 candidate terephthalate 1,2-dioxygenase oxygenase component small subunit K18075 tphA3; terephthalate 1,2-dioxygenase oxygenase component beta subunit [EC:1.14.12.15]
D Rta_16720 Ferredoxin--NAD(+) reductase-like protein K18077 tphA1; terephthalate 1,2-dioxygenase reductase component [EC:1.18.1.-]
D Rta_16730 4-hydroxythreonine-4-phosphate dehydrogenase (4-(phosphohydroxy)-L-threonine dehydrogenase)-like protein K18076 tphB; 1,2-dihydroxy-3,5-cyclohexadiene-1,4-dicarboxylate dehydrogenase [EC:1.3.1.53]
D Rta_24770 Candidate protocatechuate 4,5-dioxygenase alpha chain K04100 ligA; protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
D Rta_24760 Candidate protocatechuate 4,5-dioxygenase beta chain K04101 ligB; protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8]
D Rta_12030 protocatechuate 3,4-dioxygenase, beta subunit-like protein K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:rta03020]
D Rta_35690 rpoB; Candidate DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Rta_35680 rpoC; Candidate DNA-directed RNA polymerase, beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Rta_36050 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Rta_32990 rpoZ; DNA-directed RNA polymerase omega chain (RNAP omega subunit) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
D Rta_20780 ATP-dependent helicases-like protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:rta03010]
D Rta_13640 rpsA; candidate 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D Rta_17430 rpsB; candidate 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D Rta_03320 rpsC; Candidate 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D Rta_36060 rpsD; Candidate 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D Rta_36140 rpsE; Candidate 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D Rta_24130 rpsF; Candidate 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D Rta_03220 rpsG; Candidate 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D Rta_36170 rpsH; Candidate 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D Rta_07020 rpsI; Candidate 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D Rta_03250 rpsJ; Candidate 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D Rta_36070 rpsK; Candidate 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D Rta_03210 rpsL; Candidate 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D Rta_36080 rpsM; Candidate 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D Rta_36180 rpsN; Candidate 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Rta_26480 rpsO; Candidate 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D Rta_12100 rpsP; candidate 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D Rta_03350 rpsQ; Candidate 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D Rta_24110 Candidate ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D Rta_03300 rpsS; Candidate 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D Rta_27850 rpsT; Candidate Ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D Rta_26680 rpsU; Candidate 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D Rta_35720 rplA; Candidate 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D Rta_03290 rplB; Candidate 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D Rta_03260 rplC; Candidate 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D Rta_03270 rplD; Candidate 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D Rta_36190 rplE; Candidate 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D Rta_36160 rplF; Candidate 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D Rta_35700 rplL; Candidate 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D Rta_24100 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D Rta_35710 rplJ; Candidate 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D Rta_35730 rplK; Candidate 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D Rta_07010 rplM; Candidate 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D Rta_36210 rplN; Candidate 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D Rta_36120 rplO; Candidate 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D Rta_03330 rplP; Candidate 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D Rta_36040 rplQ; Candidate 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D Rta_36150 rplR; Candidate 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D Rta_12130 rplS; candidate 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D Rta_17800 rplT; candidate 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D Rta_29120 rplU; candidate 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D Rta_03310 rplV; Candidate 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D Rta_03280 rplW; Candidate 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D Rta_36200 rplX; Candidate 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D Rta_33290 50S ribosomal protein L25-like protein K02897 RP-L25; large subunit ribosomal protein L25
D Rta_29110 rpmA; candidate 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D Rta_31680 rpmB; candidate 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D Rta_03340 rpmC; Candidate 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D Rta_36130 rpmD; Candidate 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D Rta_23450 rpmE; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31
D Rta_28560 rpmF; candidate 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D Rta_31690 rpmG; candidate 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D Rta_38235 rpmH; candidate 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D Rta_17790 rpmI; candidate 50S ribosomal protein L35 (ribosomal subunit protein A) K02916 RP-L35; large subunit ribosomal protein L35
D Rta_36090 rpmJ; Candidate 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D Rta_05445 rrsA; putative protein encoded by Rta_05445 K01977 16SrRNA; 16S ribosomal RNA
D Rta_05448 rrlA; putative protein encoded by Rta_05448 K01980 23SrRNA; 23S ribosomal RNA
D Rta_05449 rrfA; putative protein encoded by Rta_05449 K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:rta00970]
D Rta_10716 trnA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rta_12687 trnA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rta_05447 trnA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rta_33176 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rta_22266 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rta_33986 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rta_02919 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rta_22776 trnN; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Rta_10718 trnD; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Rta_15807 trnC; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Rta_33276 trnQ; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Rta_10717 trnE; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Rta_14986 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rta_35767 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rta_15806 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rta_24446 trnH; tRNA-His K14226 tRNA-His; tRNA His
D Rta_05446 trnI; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Rta_26436 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rta_15808 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rta_31496 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rta_17376 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rta_15766 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rta_12686 trnK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Rta_21036 trnK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Rta_33177 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D Rta_36036 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D Rta_34376 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D Rta_35627 trnF; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Rta_22276 trnP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rta_17846 trnP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rta_29136 trnP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rta_32906 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rta_15456 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rta_30266 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rta_19476 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rta_08466 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Rta_10376 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Rta_35766 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Rta_35756 trnW; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Rta_35768 trnY; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Rta_17356 trnV; tRNA-Val K14237 tRNA-Val; tRNA Val
D Rta_24456 trnV; tRNA-Val K14237 tRNA-Val; tRNA Val
D Rta_18556 trnV; tRNA-Val K14237 tRNA-Val; tRNA Val
D Rta_10710 gltX; candidate glutamyl-tRNA synthetase (Glutamate--tRNA ligase) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rta_03860 gatA; Candidate Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Rta_29340 amidase-like protein K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Rta_33380 gatA; candidate glutamyl-tRNA(GLN) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Rta_17420 amidase-like protein K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Rta_03870 gatB; Candidate Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Rta_03850 gatC; Candidate Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Rta_26980 glnS; Candidate glutaminyl-tRNA synthetase (Glutamine--tRNA ligase) K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Rta_15010 alaS; candidate alanyl-tRNA synthetase (Alanine--tRNA ligase) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Rta_31160 aspS; candidate aspartyl-tRNA synthetase (Aspartate--tRNA ligase) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Rta_05550 glyQ; Candidate Glycine--tRNA ligase alpha chain (Glycyl-tRNA synthetase alpha chain) K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Rta_05560 glyS; Candidate glycine--tRNA ligase beta chain (Glycyl-tRNA synthetase beta chain) K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Rta_17770 thrS; candidate threonyl-tRNA synthetase (Threonine--tRNA ligase) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Rta_30270 serS; candidate seryl-tRNA synthetase (Serine--tRNA ligase) K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Rta_15400 cysS; candidate cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Rta_30620 metG; candidate methionyl-tRNA synthetase (Methionine--tRNA ligase) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Rta_36890 fmt; Candidate methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Rta_31350 valS; candidate valyl-tRNA synthetase (Valine--tRNA ligase) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Rta_02310 leuS; Candidate Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Rta_31790 ileS; candidate isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Rta_28340 lysU; candidate lysyl-tRNA synthetase (Lysine--tRNA ligase) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Rta_02780 argS; Candidate Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Rta_29060 proS; Global RNA synthesis factor K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Rta_18950 hisS; candidate histidyl-tRNA synthetase (Histidine--tRNA ligase) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Rta_17810 pheS; candidate phenylalanyl-tRNA synthetase alpha subunit(Phenylalanine--tRNA ligase alpha subunit) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Rta_17820 pheT; candidate phenylalanyl-tRNA synthetase beta subunit(Phenylalanine--tRNA ligase alpha subuniit) K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Rta_07080 tyrS; Candidate Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Rta_10270 trpS; candidate tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:rta03060]
D Rta_36110 secY; Candidate preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D Rta_35750 secE; Candidate preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D Rta_26440 Candidate preprotein translocase, subunit SecG K03075 secG; preprotein translocase subunit SecG
D Rta_36970 Candidate preprotein translocase, subunit SecD K03072 secD; preprotein translocase subunit SecD
D Rta_36960 Candidate preprotein translocase, subunit SecF K03074 secF; preprotein translocase subunit SecF
D Rta_36980 conserved hypothetical protein K03210 yajC; preprotein translocase subunit YajC
D Rta_38210 Candidate preprotein translocase subunit K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Rta_08480 secA; Candidate preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Rta_30740 secB; Candidate protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D Rta_34470 ffh; Candidate signal recognition particle protein SR54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Rta_33520 ftsY; Candidate Cell division protein ftsY K03110 ftsY; fused signal recognition particle receptor
D Rta_08340 Candidate Sec independent protein secretion pathway, components TatA K03116 tatA; sec-independent protein translocase protein TatA
D Rta_08350 Candidate Sec independent protein secretion pathway, components TatB K03117 tatB; sec-independent protein translocase protein TatB
D Rta_08360 Candidate Sec independent protein secretion pathway, components TatC K03118 tatC; sec-independent protein translocase protein TatC
D Rta_28430 lepB; candidate signal peptidase I (Leader peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Rta_31800 lspA; Signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:rta04122]
D Rta_18360 iscS; Candidate cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Rta_13050 3-mercaptopyruvate sulfurtransferase (Rhodanese-like protein)-like protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Rta_31470 conserved hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Rta_02060 trmU; Candidate tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Rta_23970 moaE; Candidate molybdopterin converting factor subunit 2 (MPT synthase subunit 2) K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D Rta_23120 moaA; Candidate molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Rta_23980 moaD; Candidate molybdopterin converting factor subunit 1 (MPT synthase subunit 1) K03636 moaD; sulfur-carrier protein
D Rta_30810 Candidate molybdopterin and thiamine biosynthesis protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D Rta_37320 moaC; Candidate molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Rta_26720 mog; Candidate molybdopterin biosynthesis mog protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Rta_22680 thiS; Candidate ThiS protein K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:rta03018]
D Rta_29070 (di)nucleoside polyphosphate hydrolase-like protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D Rta_28640 rne; candidate ribonuclease E (RNase E) K08300 rne; ribonuclease E [EC:3.1.26.12]
D Rta_25820 eno; 2-phospho-D-glycerate hydro-lyase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Rta_26470 pnp; Candidate polyribonucleotide nucleotidyltransferase protein K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Rta_11560 rhlE1; Candidate ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Rta_10340 rhlE2; Candidate ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Rta_17380 rnr; candidate exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Rta_01330 recQ1; Candidate ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Rta_04380 recQ2; Candidate ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Rta_23430 rho; Candidate transcription termination factor rho K03628 rho; transcription termination factor Rho
D Rta_25080 dnaK; Candidate heat shock protein, HSP70 family K04043 dnaK; molecular chaperone DnaK
D Rta_35150 groL; groEL protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rta_18990 hfq; candidate host factor I protein K03666 hfq; host factor-I protein
D Rta_23620 ppk; ATP-polyphosphate phosphotransferase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D Rta_27780 pcnB; Candidate polynucleotide adenylyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:rta03030]
D Rta_18550 dnaQ; Candidate DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rta_00110 exonuclease protein-like protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rta_15130 dnaE1; Candidate DNA polymerase III alpha subunit, DnaE subfamily K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Rta_23300 dnaX; Candidate DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Rta_19830 holB; Candidate DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Rta_02330 holA; Candidate DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Rta_19430 holC; Candidate DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Rta_00020 dnaN; Candidate DNA polymerase III sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rta_24090 dnaB; Candidate replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Rta_24700 dnaG; Candidate DNA primase protein DnaG K02316 dnaG; DNA primase [EC:2.7.7.101]
D Rta_02040 ssb; Candidate single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rta_23210 rnhA; Candidate ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Rta_17570 rnhB; Candidate ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Rta_12840 polA; Candidate DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rta_20930 ligC; Candidate DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:rta03410]
D Rta_16580 nth; Candidate endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Rta_35780 ung; Candidate uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D Rta_33220 mutY; Candidate A/G-specific adenine glycosylase protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Rta_14860 Candidate 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D Rta_33240 mutM; Candidate formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Rta_10440 DNA-formamidopyrimidine glycosylase-like protein K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D Rta_15410 alkA; Candidate DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D Rta_10950 fusion protein AdaA/AlkA : methylphosphotriester-DNA alkyltransferase and transcriptional regulator; DNA-3-methyladenine-glycosylase II-like protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D Rta_00380 uracil-DNA glycosylase protein-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Rta_36675 Conserved hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Rta_14470 xthA; Candidate exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Rta_20710 xthB; Candidate exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Rta_03890 xthC; Candidate exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Rta_12840 polA; Candidate DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rta_32070 recJ; Candidate single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Rta_20930 ligC; Candidate DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:rta03420]
D Rta_17250 mfd; Candidate transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Rta_06730 uvrA2; Candidate excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D Rta_02020 uvrA1; Candidate excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D Rta_18340 uvrB; Candidate excinuclease ABC, helicase subunit K03702 uvrB; excinuclease ABC subunit B
D Rta_24510 uvrC; Candidate excinuclease ABC, nuclease subunit K03703 uvrC; excinuclease ABC subunit C
D Rta_12760 uvrD; Candidate DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Rta_12840 polA; Candidate DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rta_20930 ligC; Candidate DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Rta_20780 ATP-dependent helicases-like protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03430 Mismatch repair [PATH:rta03430]
D Rta_26860 mutS; Candidate DNA mismatch repair ATPase protein K03555 mutS; DNA mismatch repair protein MutS
D Rta_26010 mutL; Candidate DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D Rta_12760 uvrD; Candidate DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Rta_21890 xseA; Candidate exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Rta_13080 xseB; Candidate exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Rta_32070 recJ; Candidate single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Rta_02040 ssb; Candidate single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rta_15130 dnaE1; Candidate DNA polymerase III alpha subunit, DnaE subfamily K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Rta_00020 dnaN; Candidate DNA polymerase III sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rta_23300 dnaX; Candidate DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Rta_02330 holA; Candidate DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Rta_19830 holB; Candidate DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Rta_18550 dnaQ; Candidate DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rta_00110 exonuclease protein-like protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rta_19430 holC; Candidate DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Rta_20930 ligC; Candidate DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:rta03440]
D Rta_32070 recJ; Candidate single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Rta_02040 ssb; Candidate single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rta_28390 recO; Candidate DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D Rta_23280 recR; Candidate recombinational DNA repair K06187 recR; recombination protein RecR
D Rta_37450 recA; Candidate DNA recombinase A K03553 recA; recombination protein RecA
D Rta_12840 polA; Candidate DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rta_07120 ruvA; Candidate Holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA
D Rta_07130 ruvB; Candidate Holliday junction resolvasome, helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Rta_09800 ruvC; Candidate Holliday junction resolvasome, endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Rta_36270 recG; Candidate ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Rta_15130 dnaE1; Candidate DNA polymerase III alpha subunit, DnaE subfamily K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Rta_00020 dnaN; Candidate DNA polymerase III sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rta_23300 dnaX; Candidate DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Rta_02330 holA; Candidate DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Rta_19830 holB; Candidate DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Rta_18550 dnaQ; Candidate DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rta_00110 exonuclease protein-like protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rta_19430 holC; Candidate DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Rta_04990 priA; Candidate primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D Rta_24120 priB; Candidate primosomal replication protein N K02686 priB; primosomal replication protein N
C 03450 Non-homologous end-joining [PATH:rta03450]
D Rta_10200 kulA; Candidate KU-like protein, YkoV-like family K10979 ku; DNA end-binding protein Ku
D Rta_07780 ATP-dependent DNA ligase-like protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D Rta_06820 eukaryotic-type DNA primase-like protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:rta03250]
D Rta_15380 Rotamase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:rta02010]
D Rta_20510 candidate ABC type sulfate transport systems, periplasmic component K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D Rta_22570 candidate ABC type sulfate transport systems, periplasmic component K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Rta_20500 candidate ABC type sulfate transport systems, permease component K02046 cysU; sulfate/thiosulfate transport system permease protein
D Rta_20490 candidate ABC type sulfate transport systems, permease component K02047 cysW; sulfate/thiosulfate transport system permease protein
D Rta_20480 candidate ABC type sulfate/molybdate transport systems, ATP-binding component K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Rta_13250 candidate ABC transporter probably involved in tungstate transport, periplasmic component K05772 tupA; tungstate transport system substrate-binding protein
D Rta_13230 candidate ABC transporter probably involved in tungstate transport, permease component K05773 tupB; tungstate transport system permease protein
D Rta_13240 candidate ABC transporter probably involved in tungstate transport, ATP-binding component K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D Rta_26570 candidate ABC transporter probably involved in nitrate transport, periplasmic component K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D Rta_26580 candidate ABC transporter probably involved in nitrate transport, permease component K15577 nrtB; nitrate/nitrite transport system permease protein
D Rta_26590 candidate ABC transporter probably involved in nitrate transport, ATP-binding component K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D Rta_23260 candidate ABC type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein
D Rta_34800 periplasmic component of an ABC type molybdate transport system-like protein K02020 modA; molybdate transport system substrate-binding protein
D Rta_24810 periplasmic component of an ABC type molybdate transport system-like protein K02020 modA; molybdate transport system substrate-binding protein
D Rta_13320 candidate ABC type molybdate transport system, periplasmic component K02020 modA; molybdate transport system substrate-binding protein
D Rta_13310 candidate ABC type molybdate transport system, permease component K02018 modB; molybdate transport system permease protein
D Rta_13300 candidate ABC type molybdate transport system, ATP-binding component K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Rta_15860 candidate ABC type Fe3+ transport system, periplasmic component K02012 afuA; iron(III) transport system substrate-binding protein
D Rta_24660 candidate ABC type Fe3+ transport system K02012 afuA; iron(III) transport system substrate-binding protein
D Rta_15870 candidate ABC type Fe3+ transport system, permease component with duplicated domains K02011 afuB; iron(III) transport system permease protein
D Rta_34040 candidate ABC type Fe3+ transport system, permease component with duplicated domains K02011 afuB; iron(III) transport system permease protein
D Rta_15880 afuC; candidate ABC transporter, ATP-binding component probably involved in an Fe3+ transport system K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D Rta_34050 candidate ABC transporter, ATP-binding component probably involved in an Fe3+ transport system K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D Rta_29980 candidate ABC type sugar transport system, ATP-binding component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rta_30020 candidate ABC type sugar transport system, periplasmic component K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D Rta_30010 candidate ABC type sugar transport system, permease component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D Rta_30000 candidate ABC type sugar transport system, permease component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D Rta_08160 Conserved hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein
D Rta_08140 ABC transporter periplasmic component-like protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Rta_03020 ABC transporter periplasmic component-like protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Rta_34580 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Rta_08130 candidate ABC transporter, ATP-binding component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Rta_03000 candidate ABC transporter, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Rta_34590 candidate membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Rta_08170 Hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein
D Rta_08120 candidate ABC transporter, permease component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Rta_03010 candidate ABC transporter, ATP-binding component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Rta_21290 candidate Uncharacterized ABC type transport system, periplasmic component K07335 bmpA; basic membrane protein A and related proteins
D Rta_32340 candidate Uncharacterized ABC type transport system, periplasmic component K07335 bmpA; basic membrane protein A and related proteins
D Rta_32220 candidate Uncharacterized ABC type transport system, periplasmic component K07335 bmpA; basic membrane protein A and related proteins
D Rta_21310 candidate Uncharacterized ABC type transport system, permease component K23535 nupB; general nucleoside transport system permease protein
D Rta_32360 candidate Uncharacterized ABC type transport system, permease component K23535 nupB; general nucleoside transport system permease protein
D Rta_21320 candidate Uncharacterized ABC type transport system, permease component K23536 nupC; general nucleoside transport system permease protein
D Rta_32350 candidate Uncharacterized ABC type transport system, permease component K23536 nupC; general nucleoside transport system permease protein
D Rta_21300 candidate Uncharacterized ABC type transport system, ATP-binding component with duplicated domains K23537 nupA; general nucleoside transport system ATP-binding protein
D Rta_32370 candidate Uncharacterized ABC type transport system, ATP-binding component with duplicated domains K23537 nupA; general nucleoside transport system ATP-binding protein
D Rta_07300 candidate Ribose/xylose/arabinose/galactoside ABC type transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein
D Rta_07290 candidate Ribose/xylose/arabinose/galactoside ABC type transport system, permease component K10440 rbsC; ribose transport system permease protein
D Rta_07280 candidate Ribose/xylose/arabinose/galactoside ABC type transport system, ATP-binding component with duplicated domains K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Rta_17690 candidate Ribose/xylose/arabinose/galactoside ABC type transport systems, periplasmic component K23508 ytfQ; galactofuranose transport system substrate-binding protein
D Rta_17670 candidate Ribose/xylose/arabinose/galactoside ABC type transport systems, permease component K23509 ytfT; galactofuranose transport system permease protein
D Rta_17660 candidate Ribose/xylose/arabinose/galactoside ABC type transport systems, permease component K23509 ytfT; galactofuranose transport system permease protein
D Rta_17680 pstS; candidate Ribose/xylose/arabinose/galactoside ABC type transport systems, ATP-binding component with duplicated domains K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D Rta_04480 candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, periplasmic component K17321 glpV; glycerol transport system substrate-binding protein
D Rta_04510 candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, permease component K17322 glpP; glycerol transport system permease protein
D Rta_04500 candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, permease component K17323 glpQ; glycerol transport system permease protein
D Rta_04530 candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component K17324 glpS; glycerol transport system ATP-binding protein
D Rta_04520 candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component K17325 glpT; glycerol transport system ATP-binding protein
D Rta_31270 candidate ABC type sugar transport system, periplasmic component K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D Rta_31280 candidate ABC type sugar transport system, permease component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D Rta_31290 candidate ABC type sugar transport system, permease component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D Rta_31300 candidate ABC type sugar transport system, ATP-binding component K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D Rta_23530 candidate ABC type phosphate transport system, periplasmic component K02040 pstS; phosphate transport system substrate-binding protein
D Rta_23520 candidate ABC type phosphate transport system, permease component K02037 pstC; phosphate transport system permease protein
D Rta_23510 candidate ABC type phosphate transport system, permease component K02038 pstA; phosphate transport system permease protein
D Rta_23500 candidate ABC type phosphate transport system, ATP-binding component K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Rta_33570 candidate ABC type phosphate/phosphonate transport systems, periplasmic component K02044 phnD; phosphonate transport system substrate-binding protein
D Rta_22540 candidate ABC type phosphonate transport systems, periplasmic component K02044 phnD; phosphonate transport system substrate-binding protein
D Rta_33540 candidate ABC type phosphate/phosphonate transport systems, permease component K02042 phnE; phosphonate transport system permease protein
D Rta_33550 candidate ABC type phosphate/phosphonate transport systems, permease component K02042 phnE; phosphonate transport system permease protein
D Rta_22530 candidate ABC type phosphonate transport systems, permease component K02042 phnE; phosphonate transport system permease protein
D Rta_33560 candidate ABC type phosphate/phosphonate transport systems, ATP-binding component K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D Rta_22550 candidate ABC type phosphonate transport systems, ATP-binding component K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D Rta_09370 candidate ABC type amino acid transport system, periplasmic component K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D Rta_05330 candidate ABC type amino acid transport system, periplasmic component K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D Rta_09390 candidate ABC type amino acid transport system, permease component K10002 gltK; glutamate/aspartate transport system permease protein
D Rta_09380 candidate ABC type amino acid transport system, permease component K10003 gltJ; glutamate/aspartate transport system permease protein
D Rta_09400 candidate ABC type amino acid transport system, ATP-binding component K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D Rta_34970 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_26520 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_18530 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_10060 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_22350 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_15620 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_19450 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_20110 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_12220 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_22850 hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_07550 candidate ABC type branched chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_34950 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_18520 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_10050 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_22360 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_15660 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_07600 candidate ABC type branched chain amino acid transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_20100 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_12260 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_31610 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_07610 candidate ABC type branched chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_10040 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_12250 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_31600 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_18510 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_20090 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_22370 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_15670 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_34960 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_34940 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_18500 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_10080 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_22380 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_15640 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_07580 candidate ABC type branched chain amino acid transport system, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_20080 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_12240 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_31590 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_07590 candidate ABC type branched chain amino acid transport system, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_10070 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_12230 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_31580 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_18490 livF; candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_20075 livF; Candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_22390 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_15650 livF; candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_34980 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_32790 candidate ABC type branched chain amino acid transport systems, periplasmic component K11959 urtA; urea transport system substrate-binding protein
D Rta_32780 candidate ABC type branched chain amino acid transport systems, permease component K11960 urtB; urea transport system permease protein
D Rta_32770 candidate ABC type branched chain amino acid transport systems, permease component K11961 urtC; urea transport system permease protein
D Rta_32760 candidate ABC type branched chain amino acid transport systems, ATP-binding component K11962 urtD; urea transport system ATP-binding protein
D Rta_32750 candidate ABC type branched chain amino acid transport systems, ATP-binding component K11963 urtE; urea transport system ATP-binding protein
D Rta_19520 candidate ABC type oligopeptide transport system, periplasmic component K13893 yejA; microcin C transport system substrate-binding protein
D Rta_19530 candidate ABC type oligopeptide transport system, permease component K13894 yejB; microcin C transport system permease protein
D Rta_19540 candidate ABC type oligopeptide transport system, permease component K13895 yejE; microcin C transport system permease protein
D Rta_19550 candidate ABC type oligopeptide transport system, ATP-binding component with duplicated domains K13896 yejF; microcin C transport system ATP-binding protein
D Rta_08890 candidate ABC type polysaccharide/polyol phosphate export systems that might be involved in cell envelope biogenesis, permease component K09690 wzm; homopolymeric O-antigen transport system permease protein
D Rta_08720 candidate ABC type polysaccharide/polyol phosphate export systems that might be involved in cell envelope biogenesis, permease component K09690 wzm; homopolymeric O-antigen transport system permease protein
D Rta_08880 candidate ABC type polysaccharide/polyol phosphate export systems that might be involved in cell envelope biogenesis, ATP-binding component K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D Rta_08730 candidate ABC type polysaccharide/polyol phosphate export systems that might be involved in cell envelope biogenesis, ATP-binding component K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D Rta_34650 candidate ABC transporter, permease component probably involved in multidrug transport K09694 nodJ; lipooligosaccharide transport system permease protein
D Rta_34640 candidate ABC type multidrug transport system, ATP-binding component K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D Rta_32050 candidate ABC transporter, permease component K09808 lolC_E; lipoprotein-releasing system permease protein
D Rta_32040 candidate ABC transporter, ATP-binding component K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D Rta_19410 candidate permease K07091 lptF; lipopolysaccharide export system permease protein
D Rta_19400 candidate membrane protein K11720 lptG; lipopolysaccharide export system permease protein
D Rta_02820 candidate ATP-binding component of an ABC transporter, unknown function K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D Rta_21110 candidate ABC type multidrug transport system, ATP-binding and permease components K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D Rta_27740 candidate ABC type bacteriocin/lantibiotic exporters, ATP-binding and permease domains K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D Rta_09310 candidate ABC type transport system involved in Fe S cluster assembly, permease and ATPase components K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D Rta_14870 candidate ABC type multidrug transport system, ATP-binding and permease components K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
C 02060 Phosphotransferase system (PTS) [PATH:rta02060]
D Rta_03460 candidate PTS system, enzyme I component K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Rta_03450 candidate PTS system, HPr-like protein K02784 ptsH; phosphocarrier protein HPr
D Rta_03440 candidate PTS system, enzyme IIA mannose K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Rta_02240 candidate PTS system, enzyme IIA Ntr K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:rta03070]
D Rta_11010 outer membrane protein-like protein K12340 tolC; outer membrane protein
D Rta_27730 CyaD protein-like protein K11003 hlyD; membrane fusion protein, hemolysin D
D Rta_27740 candidate ABC type bacteriocin/lantibiotic exporters, ATP-binding and permease domains K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D Rta_29930 type III secretion outer membrane protein PscC-like protein K03219 yscC; type III secretion protein C
D Rta_29850 conserved hypothetical protein K03222 yscJ; type III secretion protein J
D Rta_29680 Candidate translocation protein in type III secretion, membrane protein K03226 yscR; type III secretion protein R
D Rta_29670 Candidate translocation protein in type III secretion K03227 yscS; type III secretion protein S
D Rta_29800 translocation protein-like protein K03228 yscT; type III secretion protein T
D Rta_29720 Candidate translocation protein in type III secretion, membrane protein K03229 yscU; type III secretion protein U
D Rta_29710 Candidate type III secretory apparatus protein PcrD, membrane protein K03230 yscV; type III secretion protein V
D Rta_29820 flagellar biosynthesis/type III secretory pathway ATPase-like protein K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D Rta_29690 translocation protein in type III secretion-like protein K03225 yscQ; type III secretion protein Q
D Rta_29830 conserved hypothetical protein K03223 yscL; type III secretion protein L
D Rta_35410 gspD; candidate secretin, general secretion pathway protein D, component of type II secretion system K02453 gspD; general secretion pathway protein D
D Rta_12560 gspD; candidate secretin, general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D Rta_35320 Conserved hypothetical protein K02452 gspC; general secretion pathway protein C
D Rta_35060 gspF; candidate general secretion pathway protein F, component of type II secretion system K02455 gspF; general secretion pathway protein F
D Rta_12610 gspF; candidate general secretion pathway protein F K02455 gspF; general secretion pathway protein F
D Rta_35330 gspG; candidate pseudopilin, general secretion pathway protein G precursor (PilD-dependent protein), component of type II secretion system K02456 gspG; general secretion pathway protein G
D Rta_12570 gspH; candidate pseudopilin, general secretion pathway protein H precursor K02456 gspG; general secretion pathway protein G
D Rta_12575 pseudopilin, general secretion pathway protein G precursor-like protein K02456 gspG; general secretion pathway protein G
D Rta_12620 gspG; candidate pseudopilin, general secretion pathway protein G precursor K02456 gspG; general secretion pathway protein G
D Rta_35340 gspH; candidate pseudopilin, general secretion pathway protein H precursor (PilD-dependent protein), component of type II secretion system K02457 gspH; general secretion pathway protein H
D Rta_35350 gspI; candidate pseudopilin, general secretion pathway protein I precursor (PilD-dependent protein), component of type II secretion system K02458 gspI; general secretion pathway protein I
D Rta_35360 gspJ; candidate pseudopilin, general secretion pathway protein J precursor (PilD-dependent protein), component of type II secretion system K02459 gspJ; general secretion pathway protein J
D Rta_35370 gspK; candidate pseudopilin, general secretion pathway protein K precursor (PilD-dependent protein), component of type II secretion system K02460 gspK; general secretion pathway protein K
D Rta_35380 gspL; candidate general secretion pathway protein L, component of type II secretion system K02461 gspL; general secretion pathway protein L
D Rta_35390 gspM; candidate general secretion pathway protein M, component of type II secretion system K02462 gspM; general secretion pathway protein M
D Rta_35420 gspE; candidate general secretion pathway protein E (Type II traffic warden ATPase), component of type II secretion system K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Rta_31940 type IV pilus assembly protein tapB-like protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Rta_12600 gspE; candidate general secretion pathway protein E (Type II traffic warden ATPase) K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Rta_36970 Candidate preprotein translocase, subunit SecD K03072 secD; preprotein translocase subunit SecD
D Rta_36960 Candidate preprotein translocase, subunit SecF K03074 secF; preprotein translocase subunit SecF
D Rta_35750 secE; Candidate preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D Rta_26440 Candidate preprotein translocase, subunit SecG K03075 secG; preprotein translocase subunit SecG
D Rta_36110 secY; Candidate preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D Rta_36980 conserved hypothetical protein K03210 yajC; preprotein translocase subunit YajC
D Rta_38210 Candidate preprotein translocase subunit K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Rta_08480 secA; Candidate preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Rta_33520 ftsY; Candidate Cell division protein ftsY K03110 ftsY; fused signal recognition particle receptor
D Rta_30740 secB; Candidate protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D Rta_34470 ffh; Candidate signal recognition particle protein SR54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Rta_08340 Candidate Sec independent protein secretion pathway, components TatA K03116 tatA; sec-independent protein translocase protein TatA
D Rta_08350 Candidate Sec independent protein secretion pathway, components TatB K03117 tatB; sec-independent protein translocase protein TatB
D Rta_08360 Candidate Sec independent protein secretion pathway, components TatC K03118 tatC; sec-independent protein translocase protein TatC
D Rta_31530 conserved hypothetical protein K11891 impL; type VI secretion system protein ImpL
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:rta02020]
D Rta_23475 candidate histidine kinase, classic K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Rta_23480 candidate response regulator, OmpR K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D Rta_23320 candidate response regulator, CheY K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D Rta_17200 phoD; candidate alkaline phosphatase D precursor K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D Rta_23530 candidate ABC type phosphate transport system, periplasmic component K02040 pstS; phosphate transport system substrate-binding protein
D Rta_17280 candidate histidine kinase, classic K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D Rta_17290 candidate response regulator, OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D Rta_28800 serine protease do-like precursor-like protein K04771 degP; serine protease Do [EC:3.4.21.107]
D Rta_28450 degP; candidate serine protease do-like precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D Rta_31510 serine proteases-like protein K04771 degP; serine protease Do [EC:3.4.21.107]
D Rta_00600 candidate histidine kinase, classic K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D Rta_00610 candidate response regulator, OmpR K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D Rta_16500 Candidate periplasmic linker protein K07799 mdtA; membrane fusion protein, multidrug efflux system
D Rta_16510 Candidate inner membrane transporter K07788 mdtB; multidrug efflux pump
D Rta_16520 Candidate inner membrane transporter K07789 mdtC; multidrug efflux pump
D Rta_26830 candidate histidine kinase, classic K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D Rta_26840 candidate response regulator, OmpR K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Rta_08940 candidate histidine kinase, classic K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D Rta_15530 candidate histidine kinase, classic K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D Rta_15540 candidate response regulator, OmpR K07774 tctD; two-component system, OmpR family, response regulator TctD
D Rta_15570 tctA; Candidate large integral membrane protein K07793 tctA; putative tricarboxylic transport membrane protein
D Rta_11630 tctA; Candidate large integral membrane protein K07793 tctA; putative tricarboxylic transport membrane protein
D Rta_31900 tctA; Candidate large integral membrane protein K07793 tctA; putative tricarboxylic transport membrane protein
D Rta_15560 tctB; Candidate small integral membrane protein K07794 tctB; putative tricarboxylic transport membrane protein
D Rta_31910 tctB; Candidate small integral membrane protein K07794 tctB; putative tricarboxylic transport membrane protein
D Rta_15550 tctC; Candidate extracytoplasmic binding receptor K07795 tctC; putative tricarboxylic transport membrane protein
D Rta_21550 tctC; Candidate extracytoplasmic binding receptor K07795 tctC; putative tricarboxylic transport membrane protein
D Rta_05870 tctC; Candidate extracytoplasmic binding receptor K07795 tctC; putative tricarboxylic transport membrane protein
D Rta_33670 cytochrome AA3 controlling protein, membrane protein-like protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D Rta_00010 dnaA; Candidate chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D Rta_28050 citrate lyase beta chain (Citrase beta chain)-like protein K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D Rta_14190 citrate lyase beta chain, citryl-CoA lyase subunit-like protein K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D Rta_28760 candidate histidine kinase, classic K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D Rta_28750 candidate response regulator, LytTR K08083 algR; two-component system, LytTR family, response regulator AlgR
D Rta_04200 candidate response regulator, CheY K20264 fusR; two-component system, NarL family, response regulator FusR
D Rta_28820 candidate response regulator, NarL K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Rta_30840 candidate response regulator, NarL K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Rta_34870 pili assembly chaperone protein-like protein K07346 fimC; fimbrial chaperone protein
D Rta_34880 outer membrane usher protein-like protein K07347 fimD; outer membrane usher protein
D Rta_16790 hypothetical protein K07347 fimD; outer membrane usher protein
D Rta_20350 Uridylyl removing enzyme K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D Rta_23020 glnB; Candidate nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D Rta_14440 candidate histidine kinase, classic K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D Rta_14450 candidate response regulator, NtrC K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D Rta_14420 glnA; candidate glutamine synthetase (Glutamate--ammonia ligase) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_17990 glutamine synthetase (Glutamate--ammonia ligase)-like protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_37590 glutamine synthetase (Glutamate--ammonia ligase)-like protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_35640 candidate histidine kinase, classic K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D Rta_35630 candidate response regulator, Fis K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D Rta_10230 candidate response regulator, NtrC K07714 atoC; two-component system, NtrC family, response regulator AtoC
D Rta_18100 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_05680 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_20040 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_34500 candidate histidine kinase, classic K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D Rta_34510 candidate response regulator, NtrC K02667 pilR; two-component system, NtrC family, response regulator PilR
D Rta_10250 rpoN; candidate RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D Rta_02830 rpoN; Candidate RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D Rta_37340 type 4 fimbrial precursor PilA-like protein K02650 pilA; type IV pilus assembly protein PilA
D Rta_34400 candidate histidine kinase, classic K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D Rta_34420 candidate response regulator, NtrC K07715 glrR; two-component system, NtrC family, response regulator GlrR
D Rta_04410 candidate histidine kinase, hybrid K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Rta_04400 protein-glutamate methylesterase (protein methylesterase)-like protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Rta_34140 pilJ; Candidate twitching motility protein, methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D Rta_19320 pilJ; Candidate twitching motility protein, methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D Rta_34150 pilI; Candidate twitching motility protein, chemotaxis protein cheW K02659 pilI; twitching motility protein PilI
D Rta_19310 pilI; Candidate twitching motility protein, chemotaxis protein cheW K02659 pilI; twitching motility protein PilI
D Rta_34130 candidate histidine kinase, CheA K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D Rta_34170 candidate response regulator, CheY K02657 pilG; twitching motility two-component system response regulator PilG
D Rta_34160 candidate response regulator, CheY K02658 pilH; twitching motility two-component system response regulator PilH
D Rta_19300 candidate response regulator, CheY K02658 pilH; twitching motility two-component system response regulator PilH
D Rta_19290 candidate response regulator, CheY K02658 pilH; twitching motility two-component system response regulator PilH
D Rta_25470 candidate histidine kinase, classic K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D Rta_08510 candidate histidine kinase, classic K10916 cqsS; two-component system, CAI-1 autoinducer sensor kinase/phosphatase CqsS [EC:2.7.13.3 3.1.3.-]
D Rta_37050 candidate histidine kinase, classic K11711 dctS; two-component system, LuxR family, sensor histidine kinase DctS [EC:2.7.13.3]
D Rta_37040 candidate response regulator, NarL K11712 dctR; two-component system, LuxR family, response regulator DctR
D Rta_13540 dctQ; Candidate large permease component K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rta_14690 dctQ; Candidate large permease component K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rta_17900 dctQ; Candidate large permease component K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rta_24900 dctQ; Candidate large permease component K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rta_29490 dctQ; Candidate large permease component K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rta_09400 candidate ABC type amino acid transport system, ATP-binding component K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D Rta_09390 candidate ABC type amino acid transport system, permease component K10002 gltK; glutamate/aspartate transport system permease protein
D Rta_09380 candidate ABC type amino acid transport system, permease component K10003 gltJ; glutamate/aspartate transport system permease protein
D Rta_09370 candidate ABC type amino acid transport system, periplasmic component K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D Rta_05330 candidate ABC type amino acid transport system, periplasmic component K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D Rta_31660 transcriptional regulator, CRP family-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_22060 transcriptional regulator, CRP family-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_05480 transcriptional regulator, CRP family-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_03040 signal transduction protein : sensor, cNMP-binding domain-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_34920 transcriptional regulator, CRP family-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_38190 signal transduction protein : sensor, cNMP-binding domain-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_06400 Candidate glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D Rta_08420 petA; Candidate Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D Rta_08430 petB; Candidate cytochrome b, membrane protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D Rta_08440 petC; Candidate Cytochrome c1 precursor K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D Rta_16120 candidate cytochrome c-552 precursor K08738 CYC; cytochrome c
D Rta_25140 cytochrome d ubiquinol oxidase subunit I-like protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D Rta_25150 cytochrome bd-II oxidase subunit II-like protein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D Rta_11010 outer membrane protein-like protein K12340 tolC; outer membrane protein
D Rta_20140 candidate histidine kinase, atypical hybrid K19622 phcR; two-component system, response regulator PhcR
D Rta_10790 polysaccharide export protein-like protein K01991 wza; polysaccharide biosynthesis/export protein
D Rta_10360 candidate endo-1,4-glucanase, Glycoside Hydrolase Family 5 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Rta_06740 candidate endo-1,4-glucanase, Glycoside Hydrolase Family 5 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Rta_08520 transcriptional regulator, LuxR family-like protein K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis [PATH:rta04148]
D Rta_04320 Candidate Arginase K01476 rocF; arginase [EC:3.5.3.1]
D Rta_08420 petA; Candidate Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:rta02024]
D Rta_08490 Delta-ALA synthetase K10915 cqsA; CAI-1 autoinducer synthase [EC:2.3.-.-]
D Rta_08510 candidate histidine kinase, classic K10916 cqsS; two-component system, CAI-1 autoinducer sensor kinase/phosphatase CqsS [EC:2.7.13.3 3.1.3.-]
D Rta_18990 hfq; candidate host factor I protein K03666 hfq; host factor-I protein
D Rta_35840 trpE; Candidate anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Rta_35830 trpG; Candidate anthranilate synthase component II (Glutamine amido-transferase) K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Rta_09930 aroG; candidate phospho-2-dehydro-3-deoxyheptonate aldolase (phospho-2-keto-3-deoxyheptonate aldolase) K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Rta_34400 candidate histidine kinase, classic K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D Rta_34420 candidate response regulator, NtrC K07715 glrR; two-component system, NtrC family, response regulator GlrR
D Rta_26840 candidate response regulator, OmpR K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Rta_04200 candidate response regulator, CheY K20264 fusR; two-component system, NarL family, response regulator FusR
D Rta_34970 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_26520 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_18530 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_10060 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_22350 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_15620 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_19450 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_20110 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_12220 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_22850 hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_07550 candidate ABC type branched chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_34950 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_18520 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_10050 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_22360 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_15660 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_07600 candidate ABC type branched chain amino acid transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_20100 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_12260 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_31610 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_07610 candidate ABC type branched chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_10040 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_12250 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_31600 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_18510 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_20090 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_22370 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_15670 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_34960 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_34940 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_18500 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_10080 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_22380 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_15640 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_07580 candidate ABC type branched chain amino acid transport system, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_20080 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_12240 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_31590 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_07590 candidate ABC type branched chain amino acid transport system, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_10070 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_12230 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_31580 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_18490 livF; candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_20075 livF; Candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_22390 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_15650 livF; candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_34980 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_08520 transcriptional regulator, LuxR family-like protein K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR
D Rta_22840 Conserved hypothetical protein K20276 bapA; large repetitive protein
D Rta_34930 long-chain-fatty-acid--CoA ligase-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_02130 long-chain-fatty-acid--CoA ligase-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_05450 long-chain-fatty-acid--CoA ligase-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_04180 4-coumarate--CoA ligase (4-coumaroyl-CoA synthase)-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_31660 transcriptional regulator, CRP family-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_22060 transcriptional regulator, CRP family-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_05480 transcriptional regulator, CRP family-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_03040 signal transduction protein : sensor, cNMP-binding domain-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_34920 transcriptional regulator, CRP family-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_38190 signal transduction protein : sensor, cNMP-binding domain-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_15230 ribD; candidate riboflavin biosynthesis bifunctional protein ribD : Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase) K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Rta_35230 candidate ABC type dipeptide/oligopeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Rta_35260 candidate ABC type dipeptide/oligopeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Rta_33370 candidate ABC type dipeptide/oligopeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Rta_35250 candidate ABC type dipeptide/oligopeptide transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Rta_33330 candidate ABC type dipeptide/oligopeptide transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Rta_35220 dppC; candidate ABC type dipeptide/oligopeptide transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Rta_33340 candidate ABC type dipeptide/oligopeptide transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Rta_35210 dppD; candidate ABC type dipeptide/oligopeptide transport system, ATP-binding component K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Rta_33350 candidate ABC type dipeptide/oligopeptide transport system, ATP-binding component K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Rta_35200 candidate ABC type dipeptide/oligopeptide transport system, ATP-binding component K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Rta_33360 candidate ABC type dipeptide/oligopeptide transport system, ATP-binding component K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Rta_38210 Candidate preprotein translocase subunit K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Rta_35750 secE; Candidate preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D Rta_26440 Candidate preprotein translocase, subunit SecG K03075 secG; preprotein translocase subunit SecG
D Rta_36110 secY; Candidate preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D Rta_36980 conserved hypothetical protein K03210 yajC; preprotein translocase subunit YajC
D Rta_08480 secA; Candidate preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Rta_33520 ftsY; Candidate Cell division protein ftsY K03110 ftsY; fused signal recognition particle receptor
D Rta_30740 secB; Candidate protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D Rta_34470 ffh; Candidate signal recognition particle protein SR54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:rta02030]
D Rta_07300 candidate Ribose/xylose/arabinose/galactoside ABC type transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein
D Rta_04400 protein-glutamate methylesterase (protein methylesterase)-like protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Rta_04410 candidate histidine kinase, hybrid K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
C 02040 Flagellar assembly [PATH:rta02040]
D Rta_24710 rpoD; Candidate RNA polymerase sigma-70 factor K03086 rpoD; RNA polymerase primary sigma factor
D Rta_10250 rpoN; candidate RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D Rta_02830 rpoN; Candidate RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D Rta_25820 eno; 2-phospho-D-glycerate hydro-lyase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:rta04980]
D Rta_00890 Conserved hypothetical protein K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Rta_18240 candidate LAO/AO transport system kinase K07588 MMAA; GTPase [EC:3.6.5.-]
D Rta_18230 candidate methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Rta_01340 metH; Candidate Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Rta_01390 metH; Candidate methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:rta01501]
D Rta_01960 candidate membrane protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D Rta_28360 candidate b-N-acetylhexosaminidase, Glycoside Hydrolase Family 3 K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Rta_21770 beta-lactamase precursor (Penicillinase)-like protein K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Rta_27390 bla; Cephalosporinase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Rta_21760 beta-lactamase precursor (Penicillinase)-like protein K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Rta_13500 Candidate periplasmic linker protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Rta_23200 Candidate periplasmic linker protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Rta_22820 Conserved hypothetical protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Rta_23190 Candidate inner membrane transporter K18138 acrB; multidrug efflux pump
D Rta_13520 Candidate fused inner/outer membrane transporter K18138 acrB; multidrug efflux pump
D Rta_11010 outer membrane protein-like protein K12340 tolC; outer membrane protein
D Rta_17110 candidate bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase (candidate murein polymerase), Glycosyltransferase Family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rta_07950 candidate bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase (candidate murein polymerase), Glycosyltransferase Family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rta_03810 pbp2; Candidate cell division penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Rta_09630 ftsI; Candidate cell division penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:rta01502]
D Rta_09720 ddlA; Candidate D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Rta_01610 alr2; Candidate Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Rta_09660 murF; Candidate UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Rta_09670 mraY; Candidate phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Rta_09700 murG; candidate undecaprenyldiphospho-muramoylpentapeptide b-N-acetylglucosaminyltransferase, Glycosyltransferase Family 28 K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rta01503]
D Rta_25960 amiC; Candidate N-acetylmuramoyl-L-alanine amidase amiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Rta_28800 serine protease do-like precursor-like protein K04771 degP; serine protease Do [EC:3.4.21.107]
D Rta_28450 degP; candidate serine protease do-like precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D Rta_31510 serine proteases-like protein K04771 degP; serine protease Do [EC:3.4.21.107]
D Rta_02800 dsbA; Candidate disulfide oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D Rta_15380 Rotamase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Rta_13500 Candidate periplasmic linker protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Rta_23200 Candidate periplasmic linker protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Rta_22820 Conserved hypothetical protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Rta_23190 Candidate inner membrane transporter K18138 acrB; multidrug efflux pump
D Rta_13520 Candidate fused inner/outer membrane transporter K18138 acrB; multidrug efflux pump
D Rta_11010 outer membrane protein-like protein K12340 tolC; outer membrane protein
D Rta_17550 lpxA; Candidate Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:rta01000]
C 01001 Protein kinases [BR:rta01001]
D Rta_04680 protein kinase (serine/threonine-protein kinase)-like protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D Rta_37390 protein kinase (serine/threonine-protein kinase)-like protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Rta_17870 protein kinase (serine/threonine-protein kinase)-like protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Rta_19900 protein kinase (serine/threonine-protein kinase)-like protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Rta_26130 Conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D Rta_01660 Conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D Rta_29280 conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D Rta_22220 rsbT; Candidate signal transduction protein, serine/threonine protein kinase (Anti-sigma B factor) K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
D Rta_10810 Conserved hypothetical protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D Rta_23475 candidate histidine kinase, classic K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Rta_17280 candidate histidine kinase, classic K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D Rta_00600 candidate histidine kinase, classic K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D Rta_26830 candidate histidine kinase, classic K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D Rta_08940 candidate histidine kinase, classic K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D Rta_15530 candidate histidine kinase, classic K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D Rta_28790 candidate histidine kinase, classic K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D Rta_34830 candidate histidine kinase, classic K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D Rta_28760 candidate histidine kinase, classic K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D Rta_14440 candidate histidine kinase, classic K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D Rta_35640 candidate histidine kinase, classic K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D Rta_34500 candidate histidine kinase, classic K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D Rta_34400 candidate histidine kinase, classic K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D Rta_30540 candidate histidine kinase, classic K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Rta_34130 candidate histidine kinase, CheA K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D Rta_25470 candidate histidine kinase, classic K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D Rta_08510 candidate histidine kinase, classic K10916 cqsS; two-component system, CAI-1 autoinducer sensor kinase/phosphatase CqsS [EC:2.7.13.3 3.1.3.-]
D Rta_37050 candidate histidine kinase, classic K11711 dctS; two-component system, LuxR family, sensor histidine kinase DctS [EC:2.7.13.3]
D Rta_33830 candidate histidine kinase, unorthodox K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:rta01009]
D Rta_06910 ahcY; Candidate Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Rta_34810 htpG; Candidate heat shock protein, HSP90 family K04079 HSP90A; molecular chaperone HtpG
D Rta_32940 serine/threonine protein phosphatase-like protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D Rta_37380 protein phosphatase (Phosphoprotein phosphatase)-like protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D Rta_18840 conserved hypothetical protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D Rta_17240 candidate phosphoserine phosphatase (O-phosphoserine phosphohydrolase) K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:rta01002]
D Rta_31800 lspA; Signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Rta_29160 pilD; candidate type 4 prepilin-like proteins leader peptide processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Rta_10320 pcp; candidate pyrrolidone-carboxylate peptidase (5-oxoprolyl-peptidase) K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D Rta_19730 guaA; candidate GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Rta_31390 conserved hypothetical protein K07010 K07010; putative glutamine amidotransferase
D Rta_06770 Conserved hypothetical protein K07010 K07010; putative glutamine amidotransferase
D Rta_37570 conserved hypothetical protein K07010 K07010; putative glutamine amidotransferase
D Rta_06780 Conserved hypothetical protein K07010 K07010; putative glutamine amidotransferase
D Rta_10690 purF; candidate amidophosphoribosyltransferase (Glutamine phosphoribosylpyrophosphate amidotransferase) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Rta_08100 gltB; Candidate Ferredoxin-dependent glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Rta_07630 glmS; Candidate Glucosamine-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Rta_29974 Conserved hypothetical protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Rta_34230 candidate asparagine synthetase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Rta_20640 conserved hypothetical protein K05520 yhbO; deglycase [EC:3.5.1.124]
D Rta_10390 pepN; candidate aminopeptidase N (membrane alanyl aminopeptidase) K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Rta_18630 prlC; candidate oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D Rta_33510 zinc protease protein-like protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D Rta_33500 zinc protease protein-like protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D Rta_19420 pepA; Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Rta_21010 dapE; Candidate succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Rta_32670 N-acetylornithinase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Rta_24720 Glutamate carboxypeptidase K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D Rta_34460 hipO; Hippuricase K01451 hipO; hippurate hydrolase [EC:3.5.1.32]
D Rta_20340 map; Peptidase M K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Rta_21580 map; Candidate methionine aminopeptidase (Peptidase M) K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Rta_37800 pepP; candidate Xaa-Pro aminopeptidase (X-Pro aminopeptidase) K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D Rta_17640 hflB2; Candidate ATP-dependent Zn protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Rta_05130 hflB1; Candidate ATP-dependent Zn protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Rta_19350 AAA-metalloprotease-like protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Rta_12180 candidate membrane protein, related to protease K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D Rta_09440 htpX; Candidate heat shock protein, membrane protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D Rta_30340 Conserved hypothetical protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D Rta_37300 conserved hypothetical protein K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D Rta_17500 candidate membrane protein K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D Rta_22800 Candidate membrane protein K16922 yydH; putative peptide zinc metalloprotease protein
D Rta_15350 conserved hypothetical protein K09933 mtfA; MtfA peptidase
D Rta_28800 serine protease do-like precursor-like protein K04771 degP; serine protease Do [EC:3.4.21.107]
D Rta_28450 degP; candidate serine protease do-like precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D Rta_31510 serine proteases-like protein K04771 degP; serine protease Do [EC:3.4.21.107]
D Rta_08380 degQ; Candidate serine protease degQ precursor K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D Rta_31980 conserved hypothetical protein K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D Rta_03200 dac; Candidate penicillin-binding protein precursor (D-alanyl-D-alanine carboxypeptidase) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Rta_22900 pbpG; Candidate penicillin-binding protein 5 precursor (D-alanyl-D-alanine carboxypeptidase) K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D Rta_36700 penicillin-binding protein 4 precursor (D-alanyl-D-alanine carboxypeptidase)-like protein K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Rta_05770 clpP; Candidate ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D Rta_15780 clpP; candidate ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D Rta_15800 lonA; Candidate ATP-dependent LA protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D Rta_29040 ATP-dependent protease La-like protein K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D Rta_21990 lexA; Candidate transcriptional regulator LexA (Repressor lexA), LexA family K01356 lexA; repressor LexA [EC:3.4.21.88]
D Rta_28430 lepB; candidate signal peptidase I (Leader peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Rta_30780 carboxy-terminal processing protease precursor (C-terminal processing protease)-like protein K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Rta_28600 proteases-like protein K04773 sppA; protease IV [EC:3.4.21.-]
D Rta_19780 muramoyltetrapeptide carboxypeptidase (LD-carboxypeptidase A)-like protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D Rta_09580 hslV; Candidate ATP-dependent protease K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D Rta_18690 conserved hypothetical protein K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D Rta_04610 ggt; Glutamyl transpeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rta_16680 gamma-glutamyltranspeptidase precursor (Gamma-glutamyltransferase)-like protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rta_24680 gamma-glutamyltranspeptidase precursor-like protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rta_20280 gamma-glutamyltranspeptidase precursor (Gamma-glutamyltransferase)-like protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rta_20310 protease-like protein K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase
D Rta_26700 pmbA; Candidate PmbA protein K03592 pmbA; PmbA protein
D Rta_09920 tldD; candidate TldD protein K03568 tldD; TldD protein
D Rta_19020 HflC protein-like protein K04087 hflC; modulator of FtsH protease HflC
D Rta_19010 hflK; Candidate HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:rta01003]
D Rta_08780 candidate b-glycosyltransferase, Glycosyltransferase Family 2 K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D Rta_26190 a-glycosyltransferase, Glycosyltransferase Family 4-like protein K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-]
D Rta_32410 animal glycogenin, Glycosyltransferase Family 8-like protein K00750 GYG1; glycogenin [EC:2.4.1.186]
D Rta_09860 candidate monofunctional peptidoglycan glycosyltransferase, Glycosyltransferase Family 51 K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Rta_00530 monofunctional peptidoglycan glycosyltransferase, Glycosyltransferase Family 51-like protein K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Rta_17110 candidate bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase (candidate murein polymerase), Glycosyltransferase Family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rta_07950 candidate bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase (candidate murein polymerase), Glycosyltransferase Family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rta_34440 candidate b-glucosyltransferase MdoH, Glycosyltransferase Family 2 K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D Rta_08900 candidate b-glycosyltransferase, Glycosyltransferase Family 2 K16649 glft1; rhamnopyranosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,3/1,4-galactofuranosyltransferase [EC:2.4.1.287]
D Rta_07730 candidate zeaxanthin b-glucosyltransferase, Glycosyltransferase Family 1 K14596 crtX; zeaxanthin glucosyltransferase [EC:2.4.1.276]
D Rta_36500 candidate trehalose-6-phosphate synthase, Glycosyltransferase Family 20 K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:rta01005]
D Rta_17550 lpxA; Candidate Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D Rta_17560 lipid-A-disaccharide synthase, Glycosyltransferase Family 19-like protein K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D Rta_09760 candidate UDP-3-0-acyl N-acetylglucosamine deacetylase (LpxC), Carbohydrate Esterase Family 11 K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D Rta_17530 lpxD; Candidate UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D Rta_15360 lpxH; Candidate UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D Rta_21920 lpxK; Candidate Tetraacyldisaccharide 4-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D Rta_07850 Acyltransferases-like protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D Rta_07860 Acyltransferases-like protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D Rta_10980 candidate KDO transferase, Glycosyltransferase Family 30 K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D Rta_00440 Conserved hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D Rta_06570 Hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D Rta_25800 kdsA; Candidate 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D Rta_21940 kdsB; Candidate 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D Rta_38160 kdsD; Candidate Arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D Rta_13600 ADP-heptose synthase-like protein K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D Rta_37130 Candidate Aut protein (necessary for autotrophic growth) K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D Rta_10970 candidate LPS heptosyltransferase, Glycosyltransferase Family 9 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D Rta_01890 Candidate LPS heptosyltransferase, Glycosyltransferase Family 9 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D Rta_10890 candidate membrane protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D Rta_21120 candidate membrane protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D Rta_04800 Candidate Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D Rta_05570 histidinol phosphatase-like protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D Rta_13590 hldD; candidate ADP-L-glycero-D-manno-heptose-6-epimerase (ADP-glyceromanno-heptose 6-epimerase) K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rta01011]
D Rta_08210 murA; Candidate UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Rta_10580 murB; candidate UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Rta_09710 murC; Candidate UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Rta_09680 murD; Candidate UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase (D-glutamic acid adding enzyme) K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Rta_09640 murE; Candidate UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Rta_09720 ddlA; Candidate D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Rta_01610 alr2; Candidate Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Rta_19780 muramoyltetrapeptide carboxypeptidase (LD-carboxypeptidase A)-like protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D Rta_09670 mraY; Candidate phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Rta_09700 murG; candidate undecaprenyldiphospho-muramoylpentapeptide b-N-acetylglucosaminyltransferase, Glycosyltransferase Family 28 K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Rta_26900 Candidate undecaprenol kinase (Bacitracin resistance protein) K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Rta_13140 bacA; Candidate bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Rta_27840 Candidate virulence factor K03980 murJ; putative peptidoglycan lipid II flippase
D Rta_17110 candidate bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase (candidate murein polymerase), Glycosyltransferase Family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rta_07950 candidate bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase (candidate murein polymerase), Glycosyltransferase Family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rta_03810 pbp2; Candidate cell division penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Rta_09630 ftsI; Candidate cell division penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Rta_03200 dac; Candidate penicillin-binding protein precursor (D-alanyl-D-alanine carboxypeptidase) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Rta_36700 penicillin-binding protein 4 precursor (D-alanyl-D-alanine carboxypeptidase)-like protein K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Rta_22900 pbpG; Candidate penicillin-binding protein 5 precursor (D-alanyl-D-alanine carboxypeptidase) K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D Rta_09860 candidate monofunctional peptidoglycan glycosyltransferase, Glycosyltransferase Family 51 K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Rta_00530 monofunctional peptidoglycan glycosyltransferase, Glycosyltransferase Family 51-like protein K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Rta_07430 peptidoglycan lytic transglycosylase, Glycoside Hydrolase Family 23-like protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Rta_37020 membrane-bound lytic murein transglycosylase A precursor (Murein hydrolase A)-like protein K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D Rta_25250 mltB; candidate peptidoglycan lytic transglycosylase (MltB), Glycoside Hydrolase Family 23 K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D Rta_23240 peptidoglycan lytic transglycosylase, Glycoside Hydrolase Family 23-like protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D Rta_19850 conserved hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D Rta_28810 Conserved hypothetical protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Rta_31870 conserved hypothetical protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Rta_25960 amiC; Candidate N-acetylmuramoyl-L-alanine amidase amiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Rta_34520 ampD; candidate amidase protein K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:rta01004]
D Rta_28530 fabD; Candidate [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Rta_28540 fabH; Candidate 3-oxoacyl-[acyl-carrier-protein] synthase (Beta-ketoacyl-ACP synthase) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Rta_04120 Candidate 3-oxoacyl-[acyl-carrier-protein] synthase (Beta-ketoacyl-ACP synthase) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Rta_02610 fabB; Candidate 3-oxoacyl-[acyl-carrier-protein] synthase I (Beta-ketoacyl-ACP synthase) K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Rta_28500 fabF; Candidate 3-oxoacyl-[acyl-carrier-protein] synthase (Beta-ketoacyl-ACP synthase) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rta_04930 3-oxoacyl-[acyl-carrier-protein] reductase-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_14330 dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_23110 dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_28520 fabG; Candidate 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_02640 3-oxoacyl-[acyl-carrier-protein] reductase-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_22710 3-oxoacyl-[acyl-carrier-protein] reductase-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_31880 dehydrogenase/reductase-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_17220 dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rta_17540 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases-like protein K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Rta_19510 fabI; Candidate Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D Rta_19160 Lysophospholipase (Lecithinase B)-like protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D Rta_09300 Acyl-CoA thioester hydrolase-like protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D Rta_04810 fatty acid desaturase, membrane protein-like protein K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D Rta_31710 stearoyl-coa desaturase oxidorecuctase protein-like protein K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D Rta_15940 acsA; candidate acetyl-coenzyme A synthetase(Acetate--CoA ligase) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rta_10430 Acetyl-CoA synthase (Acetate thiokinase) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rta_18780 prpE; candidate propionate--CoA ligase (Propionyl-CoA synthetase) K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D Rta_00980 Candidate acetoacetate--CoA ligase (Acetoacetyl-CoA synthetase) K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D Rta_14110 pimeloyl-CoA synthetase-like protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D Rta_34930 long-chain-fatty-acid--CoA ligase-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_02130 long-chain-fatty-acid--CoA ligase-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_05450 long-chain-fatty-acid--CoA ligase-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_04180 4-coumarate--CoA ligase (4-coumaroyl-CoA synthase)-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_11790 long-chain-fatty-acid--CoA ligase-like protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D Rta_28550 plsX; candidate fatty acid/phospholipid synthesis protein plsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Rta_10470 candidate membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Rta_05580 plsC; Candidate 1-acylglycerol-3-phosphate O-acyltransferase (lyso-phosphatidic acid acyltransferase) K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rta_34060 plsC; Candidate 1-acylglycerol-3-phosphate O-acyltransferase (lyso-phosphatidic acid acyltransferase) K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:rta01008]
D Rta_24240 Candidate hydroxyacid oxidase (Glycolate oxidase) K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46]
D Rta_27330 aspartate racemase-like protein K01779 racD; aspartate racemase [EC:5.1.1.13]
D Rta_14030 aspartate racemase-like protein K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:rta01006]
D Rta_13090 Geranyltranstransferase (Farnesyl-diphosphate synthase)-like protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D Rta_29130 Trans-hexaprenyltranstransferase (All-trans-heptaprenyl-diphosphate synthase)-like protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D Rta_17470 uppS; Undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Rta_15730 phytoene synthase-like protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D Rta_07700 candidate phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D Rta_26050 miaA; Candidate tRNA delta(2)-isopentenylpyrophosphate transferase (Isopentenyl-diphosphate:tRNA isopentenyltransferase) K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Rta_36240 ubiA; Candidate 4-hydroxybenzoate octaprenyltransferase (4-HB polyprenyltransferase) K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D Rta_33660 ctaB; candidate protoheme IX farnesyltransferase (Heme O synthase), membrane protein K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:rta01007]
D Rta_10710 gltX; candidate glutamyl-tRNA synthetase (Glutamate--tRNA ligase) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rta_26980 glnS; Candidate glutaminyl-tRNA synthetase (Glutamine--tRNA ligase) K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Rta_15040 glutamyl-tRNA synthetase (Glutamate--tRNA ligase)-like protein K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D Rta_07080 tyrS; Candidate Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Rta_10270 trpS; candidate tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Rta_15400 cysS; candidate cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Rta_02780 argS; Candidate Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Rta_30620 metG; candidate methionyl-tRNA synthetase (Methionine--tRNA ligase) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Rta_31790 ileS; candidate isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Rta_31350 valS; candidate valyl-tRNA synthetase (Valine--tRNA ligase) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Rta_02310 leuS; Candidate Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Rta_28340 lysU; candidate lysyl-tRNA synthetase (Lysine--tRNA ligase) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Rta_31160 aspS; candidate aspartyl-tRNA synthetase (Aspartate--tRNA ligase) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Rta_18950 hisS; candidate histidyl-tRNA synthetase (Histidine--tRNA ligase) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Rta_05550 glyQ; Candidate Glycine--tRNA ligase alpha chain (Glycyl-tRNA synthetase alpha chain) K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Rta_05560 glyS; Candidate glycine--tRNA ligase beta chain (Glycyl-tRNA synthetase beta chain) K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Rta_30270 serS; candidate seryl-tRNA synthetase (Serine--tRNA ligase) K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Rta_29060 proS; Global RNA synthesis factor K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Rta_17770 thrS; candidate threonyl-tRNA synthetase (Threonine--tRNA ligase) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Rta_15010 alaS; candidate alanyl-tRNA synthetase (Alanine--tRNA ligase) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Rta_17810 pheS; candidate phenylalanyl-tRNA synthetase alpha subunit(Phenylalanine--tRNA ligase alpha subunit) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Rta_17820 pheT; candidate phenylalanyl-tRNA synthetase beta subunit(Phenylalanine--tRNA ligase alpha subuniit) K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Rta_29290 aatA; candidate aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rta_24050 Transaminase A K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Rta_18330 aspC; Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Rta_19370 aminotransferases-like protein K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D Rta_20980 aminotransferases-like protein K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D Rta_08240 hisC; Candidate Histidinol-phosphate aminotransferase 1 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rta_16440 Imidazole acetol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rta_36600 Beta-alanine--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D Rta_27880 Candidate acetylornithine aminotransferase (acetylornithine transaminase) K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Rta_34190 hemL; candidate glutamate-1-semialdehyde 2,1-aminomutase (Glutamate-1-semialdehyde aminotransferase) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Rta_03530 dat; Candidate D-alanine aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Rta_01870 bcat; Candidate Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Rta_16260 candidate serine--glyoxylate aminotransferase (Serine--glyoxylate transaminase) K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D Rta_27970 serC; Candidate phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450 [BR:rta00199]
D Rta_37620 cytochromes P450-like protein K15629 CYP152A; fatty-acid peroxygenase [EC:1.11.2.4]
C 00194 Photosynthesis proteins [BR:rta00194]
D Rta_27690 Ferredoxin--NAD(+) reductase-like protein K02639 petF; ferredoxin
D Rta_03620 Candidate F-ATPase, epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Rta_03610 Candidate F-ATPase, beta chain K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Rta_03600 Candidate F-ATPase, gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Rta_03590 Candidate F-ATPase, alpha chain K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Rta_03580 Candidate F-ATPase, delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Rta_03570 Candidate F-ATPase, B chain K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Rta_03560 Candidate F-ATPase, C chain K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Rta_27760 ATP synthase C chain-like protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Rta_03550 Candidate F-ATPase, A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Rta_03540 Conserved hypothetical protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:rta03000]
D Rta_10950 fusion protein AdaA/AlkA : methylphosphotriester-DNA alkyltransferase and transcriptional regulator; DNA-3-methyladenine-glycosylase II-like protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D Rta_07460 transcriptional regulator, LysR family-like protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Rta_36650 transcriptional regulator, LysR family-like protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Rta_00140 transcriptional regulator, LysR family-like protein K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D Rta_20805 transcriptional regulator, LysR family-like protein K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D Rta_36260 oxyR; Candidate transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D Rta_01200 transcriptional regulator, LysR family-like protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D Rta_02750 transcriptional regulator, LysR family-like protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D Rta_19380 cysB; Candidate transcriptional regulator CysB (Cys regulon transcriptional activator), LysR family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D Rta_35490 transcriptional regulator, LysR family-like protein K13794 tcuR; LysR family transcriptional regulator, regulatory protein for tcuABC
D Rta_05890 transcriptional regulator, LysR family-like protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D Rta_12370 transcriptional regulator, LysR family-like protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D Rta_14340 transcriptional regulator, LysR family-like protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D Rta_09780 transcriptional regulator, LysR family-like protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D Rta_24820 transcriptional regulator, LysR family-like protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D Rta_01100 transcriptional regulator, LysR family-like protein K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D Rta_09350 transcriptional regulator, LysR family-like protein K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D Rta_32540 transcriptional regulator, LysR family-like protein K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D Rta_04550 glpR; Candidate transcriptional regulator GlpR (Glycerol-3-phosphate regulon repressor), DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D Rta_17700 transcriptional regulator, LacI family-like protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Rta_05170 transcriptional regulator, LacI family-like protein K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D Rta_22490 transcriptional regulator, GntR family-like protein K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D Rta_09080 transcriptional regulator, GntR family-like protein K03710 K03710; GntR family transcriptional regulator
D Rta_18540 transcriptional regulator, GntR family-like protein K03710 K03710; GntR family transcriptional regulator
D Rta_28070 transcriptional regulator, GntR family-like protein K03710 K03710; GntR family transcriptional regulator
D Rta_21680 transcriptional regulator, GntR family-like protein K03710 K03710; GntR family transcriptional regulator
D Rta_19090 transcriptional regulator, GntR family-like protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Rta_27200 bifunctional protein (MocR family) : transcriptional regulator; aspartate transaminase-like protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Rta_18010 transcriptional regulator, GntR family-like protein K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
D Rta_13490 acrR; Candidate transcriptional regulator AcrR (Potential acrAB operon repressor), TetR family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D Rta_08950 transcriptional regulator, TetR family-like protein K05501 slmA; TetR/AcrR family transcriptional regulator
D Rta_01220 transcriptional regulator, TetR family-like protein K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D Rta_17230 transcriptional regulator, TetR family-like protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Rta_37090 transcriptional regulator, TetR family-like protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D Rta_23680 transcriptional regulator, Lrp/AsnC family-like protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rta_04450 lrp; Candidate transcriptional regulator Lrp (Leucine-responsive regulatory protein), Lrp/AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rta_05510 transcriptional regulator, Lrp/AsnC family-like protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rta_05150 transcriptional regulator, Lrp/AsnC family-like protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rta_07620 transcriptional regulator, Lrp/AsnC family-like protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rta_26510 lrp; Candidate transcriptional regulator Lrp (Leucine-responsive regulatory protein), Lrp/AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rta_08520 transcriptional regulator, LuxR family-like protein K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR
D Rta_17960 transcriptional regulator, MarR family-like protein K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D Rta_23950 transcriptional regulator, MarR family-like protein K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D Rta_34660 ohrR; Candidate transcriptional regulator OhrR (Organic hydroperoxide resistance transcriptional regulator), MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Rta_28880 transcriptional regulator, MerR family-like protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Rta_02260 fur; Candidate transcriptional regulator Fur (Ferric uptake regulation protein), Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Rta_30180 transcriptional regulator, Fur family-like protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Rta_16770 transcriptional regulator, IclR family-like protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D Rta_20530 transcriptional regulator, IclR family-like protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D Rta_31660 transcriptional regulator, CRP family-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_22060 transcriptional regulator, CRP family-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_05480 transcriptional regulator, CRP family-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_03040 signal transduction protein : sensor, cNMP-binding domain-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_34920 transcriptional regulator, CRP family-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_38190 signal transduction protein : sensor, cNMP-binding domain-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rta_18350 iscR; Candidate transcriptional regulator IscR (Fe-S cluster-containing transcription factor), Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D Rta_23580 transcriptional regulator, ArsR family-like protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Rta_22320 bifunctional protein : transcriptional regulator; shikimate kinase-like protein K15546 boxR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator
D Rta_35190 hexR; Candidate transcriptional regulator HexR (Hex regulon repressor), RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D Rta_37510 birA; Candidate bifunctional protein (BirA) : transcriptional regulator (Biotin operon repressor), BirA family; Biotin--[acetyl-CoA-carboxylase] synthetase (Biotin--protein ligase) K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Rta_34250 fis; Candidate transcriptional regulator Fis (Factor-for-inversion stimulation protein), Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D Rta_37730 prpR; Candidate transcriptional regulator PrpR (Propionate catabolism operon regulatory protein), Fis family K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D Rta_13360 signal transduction protein : sensor; transcriptional regulator, Fis family-like protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D Rta_13330 transcriptional regulator, LysR family-like protein K02019 modE; molybdate transport system regulatory protein
D Rta_04440 putA; Candidate bifunctional putA protein : proline dehydrogenase, delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D Rta_20200 BolA protein-like protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D Rta_00780 parB; Candidate chromosome partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Rta_33180 hrcA; Candidate transcriptional regulator HrcA (Heat-inducible transcription repressor hrcA), HrcA family K03705 hrcA; heat-inducible transcriptional repressor
D Rta_06120 Transcription elongation factor-like protein K06140 rnk; regulator of nucleoside diphosphate kinase
D Rta_34090 pyrR; candidate bifunctional protein : Pyrimidine operon attenuation regulatory protein; Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Rta_19750 transcriptional regulator, Neg_reg family-like protein K07734 paiB; transcriptional regulator
D Rta_34110 Conserved hypothetical protein K07735 algH; putative transcriptional regulator
D Rta_09560 Conserved hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
D Rta_06420 DnaK suppressor protein-like protein K06204 dksA; RNA polymerase-binding transcription factor
D Rta_15310 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D Rta_09600 Conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:rta03021]
D Rta_20780 ATP-dependent helicases-like protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D Rta_36050 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Rta_35690 rpoB; Candidate DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Rta_35680 rpoC; Candidate DNA-directed RNA polymerase, beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Rta_32990 rpoZ; DNA-directed RNA polymerase omega chain (RNAP omega subunit) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Rta_24710 rpoD; Candidate RNA polymerase sigma-70 factor K03086 rpoD; RNA polymerase primary sigma factor
D Rta_24400 rpoS; Candidate RNA polymerase sigma-38 factor K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D Rta_10620 RNA polymerase sigma-24 factor-like protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Rta_22970 RNA polymerase sigma-24 factor-like protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Rta_28480 rpoE; candidate RNA polymerase sigma-24 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Rta_33630 rpoH; candidate RNA polymerase sigma-32 factor K03089 rpoH; RNA polymerase sigma-32 factor
D Rta_10250 rpoN; candidate RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D Rta_02830 rpoN; Candidate RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D Rta_19580 nusA; L factor K02600 nusA; transcription termination/antitermination protein NusA
D Rta_15190 nusB; candidate N utilization substance protein B (Transcription termination factor) K03625 nusB; transcription antitermination protein NusB
D Rta_35740 nusG; Candidate transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D Rta_08450 sspA; Candidate Stringent starvation protein A K03599 sspA; stringent starvation protein A
D Rta_08460 sspB; Candidate Stringent starvation protein B K03600 sspB; stringent starvation protein B
D Rta_22220 rsbT; Candidate signal transduction protein, serine/threonine protein kinase (Anti-sigma B factor) K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
D Rta_22210 rsbS; Candidate signal transduction protein (antagonist protein rsbS), STAS domain protein K17762 rsbS; rsbT antagonist protein RsbS
D Rta_22200 rsbR; Candidate signal transduction protein (modulator protein rsbR), STAS domain protein K17763 rsbR; rsbT co-antagonist protein RsbR
D Rta_28470 Sigma-E factor negative regulatory protein-like protein K03597 rseA; sigma-E factor negative regulatory protein RseA
D Rta_28460 Sigma-E factor negative regulatory protein-like protein K03598 rseB; sigma-E factor negative regulatory protein RseB
D Rta_09560 Conserved hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
D Rta_06420 DnaK suppressor protein-like protein K06204 dksA; RNA polymerase-binding transcription factor
D Rta_17610 greA; candidate transcription elongation factor (Transcript cleavage factor) K03624 greA; transcription elongation factor GreA
D Rta_33010 greB; Candidate transcription elongation factor (Transcript cleavage factor) K04760 greB; transcription elongation factor GreB
D Rta_23430 rho; Candidate transcription termination factor rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:rta03019]
D Rta_28640 rne; candidate ribonuclease E (RNase E) K08300 rne; ribonuclease E [EC:3.1.26.12]
D Rta_21130 rng; Cytoplasmic axial filament protein K08301 rng; ribonuclease G [EC:3.1.26.-]
D Rta_28410 rnc; candidate ribonuclease III (RNase III) K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Rta_17380 rnr; candidate exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Rta_37860 candidate guanyl-specific ribonuclease precursor (RNase) K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D Rta_12190 orn; candidate oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Rta_11560 rhlE1; Candidate ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Rta_10340 rhlE2; Candidate ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Rta_01330 recQ1; Candidate ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Rta_04380 recQ2; Candidate ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Rta_25820 eno; 2-phospho-D-glycerate hydro-lyase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Rta_26470 pnp; Candidate polyribonucleotide nucleotidyltransferase protein K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Rta_23430 rho; Candidate transcription termination factor rho K03628 rho; transcription termination factor Rho
D Rta_25080 dnaK; Candidate heat shock protein, HSP70 family K04043 dnaK; molecular chaperone DnaK
D Rta_35150 groL; groEL protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rta_18990 hfq; candidate host factor I protein K03666 hfq; host factor-I protein
D Rta_23620 ppk; ATP-polyphosphate phosphotransferase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D Rta_27780 pcnB; Candidate polynucleotide adenylyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D Rta_29070 (di)nucleoside polyphosphate hydrolase-like protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D Rta_33210 P-loop-containing kinase-like protein K06958 rapZ; RNase adapter protein RapZ
D Rta_20410 hprA; Candidate ATP-dependent helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:rta03011]
D Rta_13640 rpsA; candidate 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D Rta_17430 rpsB; candidate 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D Rta_03320 rpsC; Candidate 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D Rta_36060 rpsD; Candidate 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D Rta_36140 rpsE; Candidate 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D Rta_24130 rpsF; Candidate 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D Rta_03220 rpsG; Candidate 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D Rta_36170 rpsH; Candidate 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D Rta_07020 rpsI; Candidate 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D Rta_03250 rpsJ; Candidate 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D Rta_36070 rpsK; Candidate 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D Rta_03210 rpsL; Candidate 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D Rta_36080 rpsM; Candidate 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D Rta_36180 rpsN; Candidate 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Rta_26480 rpsO; Candidate 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D Rta_12100 rpsP; candidate 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D Rta_03350 rpsQ; Candidate 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D Rta_24110 Candidate ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D Rta_03300 rpsS; Candidate 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D Rta_27850 rpsT; Candidate Ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D Rta_26680 rpsU; Candidate 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D Rta_35720 rplA; Candidate 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D Rta_03290 rplB; Candidate 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D Rta_03260 rplC; Candidate 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D Rta_03270 rplD; Candidate 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D Rta_36190 rplE; Candidate 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D Rta_36160 rplF; Candidate 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D Rta_24100 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D Rta_35710 rplJ; Candidate 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D Rta_35730 rplK; Candidate 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D Rta_35700 rplL; Candidate 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D Rta_07010 rplM; Candidate 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D Rta_36210 rplN; Candidate 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D Rta_36120 rplO; Candidate 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D Rta_03330 rplP; Candidate 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D Rta_36040 rplQ; Candidate 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D Rta_36150 rplR; Candidate 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D Rta_12130 rplS; candidate 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D Rta_17800 rplT; candidate 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D Rta_29120 rplU; candidate 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D Rta_03310 rplV; Candidate 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D Rta_03280 rplW; Candidate 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D Rta_36200 rplX; Candidate 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D Rta_29110 rpmA; candidate 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D Rta_31680 rpmB; candidate 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D Rta_03340 rpmC; Candidate 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D Rta_36130 rpmD; Candidate 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D Rta_23450 rpmE; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31
D Rta_28560 rpmF; candidate 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D Rta_31690 rpmG; candidate 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D Rta_38235 rpmH; candidate 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D Rta_17790 rpmI; candidate 50S ribosomal protein L35 (ribosomal subunit protein A) K02916 RP-L35; large subunit ribosomal protein L35
D Rta_36090 rpmJ; Candidate 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D Rta_33290 50S ribosomal protein L25-like protein K02897 RP-L25; large subunit ribosomal protein L25
D Rta_05449 rrfA; putative protein encoded by Rta_05449 K01985 5SrRNA; 5S ribosomal RNA
D Rta_05445 rrsA; putative protein encoded by Rta_05445 K01977 16SrRNA; 16S ribosomal RNA
D Rta_05448 rrlA; putative protein encoded by Rta_05448 K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:rta03009]
D Rta_28410 rnc; candidate ribonuclease III (RNase III) K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Rta_04680 protein kinase (serine/threonine-protein kinase)-like protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D Rta_12190 orn; candidate oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Rta_28400 era; Candidate GTP-binding protein K03595 era; GTPase
D Rta_29100 obg; candidate Spo0B-associated GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
D Rta_09560 Conserved hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
D Rta_06420 DnaK suppressor protein-like protein K06204 dksA; RNA polymerase-binding transcription factor
D Rta_19580 nusA; L factor K02600 nusA; transcription termination/antitermination protein NusA
D Rta_15190 nusB; candidate N utilization substance protein B (Transcription termination factor) K03625 nusB; transcription antitermination protein NusB
D Rta_35740 nusG; Candidate transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D Rta_14360 rsuA; rRNA-uridine isomerase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D Rta_37880 ksgA; candidate dimethyladenosine transferase (S-adenosylmethionine-6-N,N-adenosyl(rRNA) dimethyltransferase) K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Rta_35660 16S rRNA m5C967 methyltransferase-like protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Rta_31720 tRNA and rRNA cytosine-C5-methylases-like protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Rta_33480 methyltransferases-like protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Rta_37920 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Rta_00740 gidB; Candidate glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Rta_09610 mraW; Candidate S-adenosyl-methyltransferase (division cell wall cluster) K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Rta_04980 Conserved hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Rta_28590 conserved hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Rta_06920 Conserved hypothetical protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D Rta_19180 rlmB; candidate 23S rRNA (guanosine-2'-O-)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Rta_17630 rrmJ; Cell division protein ftsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D Rta_21150 Conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Rta_09540 Conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Rta_07000 Conserved hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D Rta_02840 N6-adenine-specific DNA methylase-like protein K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D Rta_18910 conserved hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Rta_05270 Conserved hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Rta_24370 rumA; Candidate 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Rta_12040 rluA; Uracil hydrolyase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Rta_18890 conserved hypothetical protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Rta_28630 rluC; Uracil hydrolyase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D Rta_18870 rluD; Uracil hydrolyase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Rta_34910 rRNA pseudouridylate synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D Rta_05900 ribosomal large subunit pseudouridine synthase (rRNA pseudouridylate synthase)-like protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D Rta_36680 ribosomal-protein-alanine acetyltransferase-like protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D Rta_12110 rimM; candidate 16S rRNA processing protein rimM K02860 rimM; 16S rRNA processing protein RimM
D Rta_17370 2-methylthioadenine synthetase-like protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D Rta_10000 candidate ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D Rta_21020 site-specific DNA-methyltransferase (adenine-specific)-like protein K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D Rta_25740 Conserved hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D Rta_28640 rne; candidate ribonuclease E (RNase E) K08300 rne; ribonuclease E [EC:3.1.26.12]
D Rta_21130 rng; Cytoplasmic axial filament protein K08301 rng; ribonuclease G [EC:3.1.26.-]
D Rta_34100 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D Rta_27160 dbpA; Candidate ATP-dependent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D Rta_12160 candidate GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Rta_18980 engA; candidate GTP-binding protein engA K03977 engA; GTPase
D Rta_19000 hflX; candidate GTP-binding protein hflX K03665 hflX; GTPase
D Rta_36730 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Rta_33000 relA; candidate GTP pyrophosphokinase (GTP pyrophosphokinase) K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Rta_19600 rbfA; candidate ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D Rta_19570 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
D Rta_21160 Conserved hypothetical protein K09710 ybeB; ribosome-associated protein
D Rta_07105 Conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
D Rta_17620 conserved hypothetical protein K07574 yhbY; RNA-binding protein
D Rta_26710 Conserved hypothetical protein K09889 yjgA; ribosome-associated protein
D Rta_02230 Candidate Sigma-54 modulation protein K05808 hpf; ribosome hibernation promoting factor
D Rta_34280 engD; candidate GTP-dependent nucleic acid-binding protein K06942 ychF; ribosome-binding ATPase
D Rta_28570 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:rta03016]
D Rta_37860 candidate guanyl-specific ribonuclease precursor (RNase) K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D Rta_07360 cca; Candidate tRNA nucleotidyltransferase (tRNA adenylyltransferase) K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D Rta_10710 gltX; candidate glutamyl-tRNA synthetase (Glutamate--tRNA ligase) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rta_29060 proS; Global RNA synthesis factor K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Rta_31790 ileS; candidate isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Rta_02310 leuS; Candidate Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Rta_30620 metG; candidate methionyl-tRNA synthetase (Methionine--tRNA ligase) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Rta_26980 glnS; Candidate glutaminyl-tRNA synthetase (Glutamine--tRNA ligase) K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Rta_02780 argS; Candidate Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Rta_28340 lysU; candidate lysyl-tRNA synthetase (Lysine--tRNA ligase) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Rta_31160 aspS; candidate aspartyl-tRNA synthetase (Aspartate--tRNA ligase) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Rta_15010 alaS; candidate alanyl-tRNA synthetase (Alanine--tRNA ligase) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Rta_17770 thrS; candidate threonyl-tRNA synthetase (Threonine--tRNA ligase) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Rta_30270 serS; candidate seryl-tRNA synthetase (Serine--tRNA ligase) K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Rta_15400 cysS; candidate cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Rta_31350 valS; candidate valyl-tRNA synthetase (Valine--tRNA ligase) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Rta_18950 hisS; candidate histidyl-tRNA synthetase (Histidine--tRNA ligase) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Rta_17810 pheS; candidate phenylalanyl-tRNA synthetase alpha subunit(Phenylalanine--tRNA ligase alpha subunit) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Rta_17820 pheT; candidate phenylalanyl-tRNA synthetase beta subunit(Phenylalanine--tRNA ligase alpha subuniit) K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Rta_07080 tyrS; Candidate Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Rta_10270 trpS; candidate tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Rta_07100 dtd; Candidate D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D Rta_05090 Conserved hypothetical protein K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
D Rta_08330 Conserved hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Rta_15030 trmB; candidate tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D Rta_28200 truA; candidate tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Rta_19610 truB; Uracil hydrolyase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D Rta_18360 iscS; Candidate cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Rta_36730 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Rta_26050 miaA; Candidate tRNA delta(2)-isopentenylpyrophosphate transferase (Isopentenyl-diphosphate:tRNA isopentenyltransferase) K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Rta_38200 trmE; candidate tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Rta_00730 gidA; Candidate glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Rta_33600 selD; Selenium donor protein K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D Rta_38230 ribonuclease P protein component (RNaseP protein)-like protein K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D Rta_32930 rph; tRNA nucleotidyltransferase K00989 rph; ribonuclease PH [EC:2.7.7.56]
D Rta_09890 exoribonuclease R-like protein K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D Rta_14920 Conserved hypothetical protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D Rta_11580 candidate ABC transporter, ATP-binding component with duplicated domains K06020 ettA; energy-dependent translational throttle protein EttA
D Rta_05550 glyQ; Candidate Glycine--tRNA ligase alpha chain (Glycyl-tRNA synthetase alpha chain) K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Rta_05560 glyS; Candidate glycine--tRNA ligase beta chain (Glycyl-tRNA synthetase beta chain) K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Rta_15040 glutamyl-tRNA synthetase (Glutamate--tRNA ligase)-like protein K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D Rta_19770 candidate bifunctional protein : haloalkane dehalogenase; tRNA-specific adenosine deaminase K01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5]
D Rta_18130 candidate tRNA-dihydrouridine synthase K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D Rta_34260 dusB; candidate tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D Rta_34390 2-methylthioadenine synthetase-like protein K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D Rta_06860 Hypothetical protein K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D Rta_15960 3-demethylubiquinone-9 3-methyltransferase (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)-like protein K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D Rta_26780 Conserved hypothetical protein (tRNA/rRNA methyltransferase) K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D Rta_12120 trmD; tRNA [GM37] methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Rta_33800 tRNA/rRNA methyltransferases-like protein K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D Rta_17580 rRNA methylases-like protein K03437 spoU; RNA methyltransferase, TrmH family
D Rta_16840 pseudouridylate synthases-like protein K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D Rta_12040 rluA; Uracil hydrolyase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Rta_02060 trmU; Candidate tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Rta_07200 Conserved hypothetical protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D Rta_31470 conserved hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Rta_18380 iscA; Candidate Fe-S cluster assembly protein K13628 iscA; iron-sulfur cluster assembly protein
D Rta_19860 conserved hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ
D Rta_22590 Conserved hypothetical protein K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D Rta_36280 queA; Candidate S-adenosylmethionine:tRNA ribosyltransferase-isomerase (Queuosine biosynthesis protein queA) K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D Rta_00120 Conserved hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Rta_28960 conserved hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D Rta_25945 Conserved hypothetical protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Rta_19150 conserved hypothetical protein K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D Rta_36310 tgt; Guanine insertion enzyme K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D Rta_15430 tilS; Candidate tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D Rta_36690 Conserved hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D Rta_26550 gcp; Candidate O-sialoglycoprotein endopeptidase (Glycoprotease) K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D Rta_25950 Conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D Rta_21040 Conserved hypothetical protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D Rta_17380 rnr; candidate exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Rta_26470 pnp; Candidate polyribonucleotide nucleotidyltransferase protein K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Rta_09810 conserved hypothetical protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C 03012 Translation factors [BR:rta03012]
D Rta_19590 infB; Candidate translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D Rta_17780 infC; candidate translation initiation factor 3 (IF-3) K02520 infC; translation initiation factor IF-3
D Rta_21030 candidate ABC transporter, ATP-binding component with duplicated domains K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D Rta_17440 tsf; candidate elongation factor Ts K02357 tsf; elongation factor Ts
D Rta_03240 tuf; Candidate Elongation factor Tu K02358 tuf; elongation factor Tu
D Rta_35760 tuf; Candidate elongation factor Tu K02358 tuf; elongation factor Tu
D Rta_03230 fusA; Candidate Elongation factor G K02355 fusA; elongation factor G
D Rta_29010 prfA; candidate peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D Rta_17460 frr; candidate ribosome recycling factor (Ribosome releasing factor) K02838 frr; ribosome recycling factor
D Rta_29020 hemK; Protein-(glutamine-N5) MTase hemK K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D Rta_33300 pth; candidate peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D Rta_36100 infA; Candidate translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D Rta_27590 infA; Candidate translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D Rta_04710 infA; Candidate Translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D Rta_24530 efp; Candidate elongation factor P K02356 efp; elongation factor P
D Rta_10400 prfB; candidate peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D Rta_06810 prfC; Candidate peptide chain release factor K02837 prfC; peptide chain release factor 3
D Rta_19560 conserved hypothetical protein K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:rta03110]
D Rta_21820 clpA; Candidate ATP-dependent Clp protease ATP-binding subunit clpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D Rta_23900 clpB; Candidate heat shock protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D Rta_15790 clpX; candidate ATP-dependent Clp protease ATP-binding subunit K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D Rta_09590 hslU; Candidate ATP-dependent hsl protease K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D Rta_34810 htpG; Candidate heat shock protein, HSP90 family K04079 HSP90A; molecular chaperone HtpG
D Rta_25080 dnaK; Candidate heat shock protein, HSP70 family K04043 dnaK; molecular chaperone DnaK
D Rta_18400 hscA; Candidate chaperone, Hsp70 (DnaK) family K04044 hscA; molecular chaperone HscA
D Rta_28350 chaperone protein-like protein K04046 yegD; hypothetical chaperone protein
D Rta_35150 groL; groEL protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rta_25090 dnaJ; Candidate heat shock protein J K03686 dnaJ; molecular chaperone DnaJ
D Rta_18390 hscB; Candidate co-chaperone, DnaJ family K04082 hscB; molecular chaperone HscB
D Rta_25860 chaperone protein, HSP33 family-like protein K04083 hslO; molecular chaperone Hsp33
D Rta_25070 grpE; Candidate heat shock protein, HSP70 cofactor K03687 GRPE; molecular chaperone GrpE
D Rta_09830 heat shock protein-like protein K13993 HSP20; HSP20 family protein
D Rta_01185 small heat shock protein, HSP20 family-like protein K13993 HSP20; HSP20 family protein
D Rta_26530 small heat shock protein-like protein K13993 HSP20; HSP20 family protein
D Rta_15520 hslR; candidate heat shock protein, HSP15 family K04762 hslR; ribosome-associated heat shock protein Hsp15
D Rta_35140 groS; groES protein K04078 groES; chaperonin GroES
D Rta_28800 serine protease do-like precursor-like protein K04771 degP; serine protease Do [EC:3.4.21.107]
D Rta_28450 degP; candidate serine protease do-like precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D Rta_31510 serine proteases-like protein K04771 degP; serine protease Do [EC:3.4.21.107]
D Rta_17640 hflB2; Candidate ATP-dependent Zn protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Rta_05130 hflB1; Candidate ATP-dependent Zn protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Rta_19350 AAA-metalloprotease-like protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Rta_03550 Candidate F-ATPase, A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Rta_34870 pili assembly chaperone protein-like protein K07346 fimC; fimbrial chaperone protein
D Rta_30740 secB; Candidate protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D Rta_00500 Conserved hypothetical protein K06006 cpxP; periplasmic protein CpxP/Spy
D Rta_36420 Conserved hypothetical protein K09796 pccA; periplasmic copper chaperone A
D Rta_36430 Conserved hypothetical protein K09796 pccA; periplasmic copper chaperone A
D Rta_15380 Rotamase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Rta_15370 Rotamase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D Rta_24450 Rotamase D K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D Rta_34560 FKBP-type peptidyl-prolyl cis-trans isomerase fkpA precursor (Rotamase)-like protein K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D Rta_25060 fkpA; Candidate Peptidylprolyl isomerase (Cyclophilin) K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D Rta_30320 peptidylprolyl isomerase (Cyclophilin)-like protein K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D Rta_25750 peptidylprolyl isomerase (Cyclophilin)-like protein K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D Rta_37680 peptidylprolyl isomerase (Cyclophilin)-like protein K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D Rta_20210 Peptidylprolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D Rta_37890 survival protein surA precursor (chaperone surA)-like protein K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D Rta_23420 trxA; Candidate thioredoxin 1 K03671 TXN; thioredoxin
D Rta_30710 thioredoxin-like protein K03671 TXN; thioredoxin
D Rta_05290 protein-disulfide reductase (thioredoxin)-like protein K03671 TXN; thioredoxin
D Rta_17070 trxC; Candidate thioredoxin 2 K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D Rta_36760 thioredoxin-like protein K05838 ybbN; putative thioredoxin
D Rta_30750 grxC; Candidate glutaredoxin K03676 grxC; glutaredoxin 3
D Rta_29030 conserved hypothetical protein K07390 grxD; monothiol glutaredoxin
D Rta_02800 dsbA; Candidate disulfide oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D Rta_20470 dsbB; Candidate disulfide oxidoreductase, membrane protein K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D Rta_34310 dsbC; Candidate Thiol:disulfide interchange protein dsbC precursor K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D Rta_14840 dsbG; Candidate Thiol:disulfide interchange protein dsbG precursor K03805 dsbG; thiol:disulfide interchange protein DsbG
C 04131 Membrane trafficking [BR:rta04131]
D Rta_18900 ndk; candidate nucleoside diphosphate kinase (Nucleoside-2-P kinase) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Rta_38060 candidate membrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D Rta_37760 gapA; candidate glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Rta_30770 gpmA; candidate 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (Phosphoglyceromutase) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rta_36840 pykA; Candidate pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Rta_34810 htpG; Candidate heat shock protein, HSP90 family K04079 HSP90A; molecular chaperone HtpG
D Rta_15820 Candidate transporter K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system
C 03051 Proteasome [BR:rta03051]
D Rta_34810 htpG; Candidate heat shock protein, HSP90 family K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:rta03032]
D Rta_23210 rnhA; Candidate ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Rta_24460 dbhB; Candidate DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D Rta_17830 ihfA; Candidate integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
D Rta_13630 ihfB; Candidate integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta
D Rta_00010 dnaA; Candidate chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D Rta_24090 dnaB; Candidate replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Rta_24700 dnaG; Candidate DNA primase protein DnaG K02316 dnaG; DNA primase [EC:2.7.7.101]
D Rta_02040 ssb; Candidate single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rta_15130 dnaE1; Candidate DNA polymerase III alpha subunit, DnaE subfamily K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Rta_00020 dnaN; Candidate DNA polymerase III sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rta_19430 holC; Candidate DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Rta_02330 holA; Candidate DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Rta_19830 holB; Candidate DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Rta_18550 dnaQ; Candidate DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rta_00110 exonuclease protein-like protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rta_23300 dnaX; Candidate DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Rta_17570 rnhB; Candidate ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Rta_12840 polA; Candidate DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rta_20930 ligC; Candidate DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Rta_27800 DnaA ATPase protein-like protein K10763 hda; DnaA-homolog protein
D Rta_13680 gyrA; Candidate DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Rta_00030 gyrB; Candidate DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Rta_25620 parC; Candidate DNA topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Rta_25650 parE; Candidate DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Rta_16100 topB; Candidate type IB DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Rta_37530 topA; Candidate type IA DNA topoisomerase K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:rta03036]
D Rta_28410 rnc; candidate ribonuclease III (RNase III) K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Rta_31500 stpA; Candidate transcriptional regulator StpA (DNA-binding protein stpA), H-NS family K03746 hns; DNA-binding protein H-NS
D Rta_24460 dbhB; Candidate DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D Rta_17830 ihfA; Candidate integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
D Rta_13630 ihfB; Candidate integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta
D Rta_00010 dnaA; Candidate chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D Rta_36250 DNA-binding ferritin-like protein-like protein K04047 dps; starvation-inducible DNA-binding protein
D Rta_23440 DNA-binding ferritin-like protein-like protein K04047 dps; starvation-inducible DNA-binding protein
D Rta_34250 fis; Candidate transcriptional regulator Fis (Factor-for-inversion stimulation protein), Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D Rta_18990 hfq; candidate host factor I protein K03666 hfq; host factor-I protein
D Rta_01200 transcriptional regulator, LysR family-like protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D Rta_02750 transcriptional regulator, LysR family-like protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D Rta_23680 transcriptional regulator, Lrp/AsnC family-like protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rta_04450 lrp; Candidate transcriptional regulator Lrp (Leucine-responsive regulatory protein), Lrp/AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rta_05510 transcriptional regulator, Lrp/AsnC family-like protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rta_05150 transcriptional regulator, Lrp/AsnC family-like protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rta_07620 transcriptional regulator, Lrp/AsnC family-like protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rta_26510 lrp; Candidate transcriptional regulator Lrp (Leucine-responsive regulatory protein), Lrp/AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rta_20950 smc; Candidate chromosome segregation protein K03529 smc; chromosome segregation protein
D Rta_30660 segregation and condensation protein A-like protein K05896 scpA; segregation and condensation protein A
D Rta_18880 scpB; Candidate segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D Rta_09740 ftsA; Candidate cell division actin-like ATPase K03590 ftsA; cell division protein FtsA
D Rta_25830 cell-division protein, septum formation-like protein K05589 ftsB; cell division protein FtsB
D Rta_09630 ftsI; Candidate cell division penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Rta_31650 ftsK; Candidate cell division ATPase K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D Rta_09620 ftsL; Candidate cell division protein (division cell wall cluster) K03586 ftsL; cell division protein FtsL
D Rta_09730 ftsQ; Candidate cell division protein (division cell wall cluster) K03589 ftsQ; cell division protein FtsQ
D Rta_09690 ftsW; Candidate cell division protein (division cell wall cluster) K03588 ftsW; cell division protein FtsW
D Rta_09750 ftsZ; Candidate cell division tubulin-like GTPase K03531 ftsZ; cell division protein FtsZ
D Rta_16330 conserved hypothetical protein K09888 zapA; cell division protein ZapA
D Rta_16340 conserved hypothetical protein K09892 zapB; cell division protein ZapB
D Rta_29180 conserved hypothetical protein K18778 zapD; cell division protein ZapD
D Rta_18820 conserved hypothetical protein K06916 zapE; cell division protein ZapE
D Rta_25960 amiC; Candidate N-acetylmuramoyl-L-alanine amidase amiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Rta_13500 Candidate periplasmic linker protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Rta_23200 Candidate periplasmic linker protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Rta_22820 Conserved hypothetical protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Rta_00360 minC; Candidate septum formation inhibitor K03610 minC; septum site-determining protein MinC
D Rta_00350 minD; Candidate septum formation inhibitor-activating ATPase K03609 minD; septum site-determining protein MinD
D Rta_00340 minE; Candidate septum formation topological specificity factor K03608 minE; cell division topological specificity factor
D Rta_08950 transcriptional regulator, TetR family-like protein K05501 slmA; TetR/AcrR family transcriptional regulator
D Rta_03840 mreB; Candidate cell morphogenesis actin-like ATPase K03569 mreB; rod shape-determining protein MreB and related proteins
D Rta_03830 mreC; Candidate cell shape-determining protein K03570 mreC; rod shape-determining protein MreC
D Rta_03820 mreD; Candidate cell shape-determining, membrane protein K03571 mreD; rod shape-determining protein MreD
D Rta_09910 rodA; Candidate rod shape-determining protein K05837 rodA; rod shape determining protein RodA
D Rta_00760 parA; Candidate chromosome partitioning protein A K03496 parA; chromosome partitioning protein
D Rta_33820 chromosome partitioning protein-like protein K03496 parA; chromosome partitioning protein
D Rta_27820 chromosome partitioning protein-like protein K03496 parA; chromosome partitioning protein
D Rta_00780 parB; Candidate chromosome partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Rta_25620 parC; Candidate DNA topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Rta_25650 parE; Candidate DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Rta_00730 gidA; Candidate glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Rta_00740 gidB; Candidate glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Rta_09520 xerC; Candidate site-specific recombinase K03733 xerC; integrase/recombinase XerC
D Rta_25920 xerD; Candidate site-specific recombinase K04763 xerD; integrase/recombinase XerD
D Rta_30610 ATP-binding protein-like protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Rta_07870 engB; Candidate GTP-binding protein K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:rta03400]
D Rta_10940 adaB; Candidate O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Rta_19950 methylated DNA-protein cysteine methyltransferase-like protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Rta_34120 phrB; Candidate deoxyribodipyrimidine photolyase (photoreactivating enzyme) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Rta_35780 ung; Candidate uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D Rta_14860 Candidate 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D Rta_33220 mutY; Candidate A/G-specific adenine glycosylase protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Rta_16580 nth; Candidate endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Rta_20780 ATP-dependent helicases-like protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D Rta_10180 NTP pyrophosphohydrolase-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Rta_25770 dut; dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Rta_37150 deoxyribodipyrimidine photolyase-like protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D Rta_00380 uracil-DNA glycosylase protein-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Rta_36675 Conserved hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Rta_15410 alkA; Candidate DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D Rta_10950 fusion protein AdaA/AlkA : methylphosphotriester-DNA alkyltransferase and transcriptional regulator; DNA-3-methyladenine-glycosylase II-like protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D Rta_33240 mutM; Candidate formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Rta_10440 DNA-formamidopyrimidine glycosylase-like protein K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D Rta_14470 xthA; Candidate exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Rta_20710 xthB; Candidate exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Rta_03890 xthC; Candidate exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Rta_32070 recJ; Candidate single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Rta_20930 ligC; Candidate DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Rta_12840 polA; Candidate DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rta_06730 uvrA2; Candidate excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D Rta_02020 uvrA1; Candidate excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D Rta_18340 uvrB; Candidate excinuclease ABC, helicase subunit K03702 uvrB; excinuclease ABC subunit B
D Rta_24510 uvrC; Candidate excinuclease ABC, nuclease subunit K03703 uvrC; excinuclease ABC subunit C
D Rta_12760 uvrD; Candidate DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Rta_35690 rpoB; Candidate DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Rta_35680 rpoC; Candidate DNA-directed RNA polymerase, beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Rta_36050 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Rta_32990 rpoZ; DNA-directed RNA polymerase omega chain (RNAP omega subunit) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Rta_17250 mfd; Candidate transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Rta_26860 mutS; Candidate DNA mismatch repair ATPase protein K03555 mutS; DNA mismatch repair protein MutS
D Rta_26010 mutL; Candidate DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D Rta_21890 xseA; Candidate exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Rta_13080 xseB; Candidate exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Rta_15130 dnaE1; Candidate DNA polymerase III alpha subunit, DnaE subfamily K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Rta_00020 dnaN; Candidate DNA polymerase III sliding clamp subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rta_19430 holC; Candidate DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Rta_02330 holA; Candidate DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Rta_19830 holB; Candidate DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Rta_18550 dnaQ; Candidate DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rta_00110 exonuclease protein-like protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rta_23300 dnaX; Candidate DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Rta_02040 ssb; Candidate single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rta_37450 recA; Candidate DNA recombinase A K03553 recA; recombination protein RecA
D Rta_07120 ruvA; Candidate Holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA
D Rta_07130 ruvB; Candidate Holliday junction resolvasome, helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Rta_09800 ruvC; Candidate Holliday junction resolvasome, endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Rta_04990 priA; Candidate primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D Rta_24120 priB; Candidate primosomal replication protein N K02686 priB; primosomal replication protein N
D Rta_01840 sms; Candidate DNA repair protein K04485 radA; DNA repair protein RadA/Sms
D Rta_36270 recG; Candidate ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Rta_28390 recO; Candidate DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D Rta_23280 recR; Candidate recombinational DNA repair K06187 recR; recombination protein RecR
D Rta_33200 recN; Candidate DNA repair ATPase K03631 recN; DNA repair protein RecN (Recombination protein N)
D Rta_06480 exonuclease protein-like protein K03554 rdgC; recombination associated protein RdgC
D Rta_23400 addA; Candidate ATP-dependent nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D Rta_23410 addB; Candidate ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Rta_34740 CRISPR-associated protein Cas1-like protein K15342 cas1; CRISP-associated protein Cas1
D Rta_21210 Conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D Rta_10200 kulA; Candidate KU-like protein, YkoV-like family K10979 ku; DNA end-binding protein Ku
D Rta_07780 ATP-dependent DNA ligase-like protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D Rta_06820 eukaryotic-type DNA primase-like protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D Rta_13680 gyrA; Candidate DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Rta_00030 gyrB; Candidate DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Rta_16100 topB; Candidate type IB DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Rta_24460 dbhB; Candidate DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D Rta_09470 Conserved hypothetical protein K07455 recT; recombination protein RecT
D Rta_34250 fis; Candidate transcriptional regulator Fis (Factor-for-inversion stimulation protein), Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D Rta_17830 ihfA; Candidate integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
D Rta_13630 ihfB; Candidate integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta
D Rta_01330 recQ1; Candidate ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Rta_04380 recQ2; Candidate ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Rta_31500 stpA; Candidate transcriptional regulator StpA (DNA-binding protein stpA), H-NS family K03746 hns; DNA-binding protein H-NS
D Rta_28870 dinP; Candidate DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Rta_21990 lexA; Candidate transcriptional regulator LexA (Repressor lexA), LexA family K01356 lexA; repressor LexA [EC:3.4.21.88]
D Rta_14890 conserved hypothetical protein K14160 imuA; protein ImuA
D Rta_14900 Conserved hypothetical protein K14161 imuB; protein ImuB
D Rta_14910 dnaE2; Candidate DNA polymerase III alpha subunit, DnaE subfamily K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D Rta_37440 recX; Candidate RecX family regulatory protein K03565 recX; regulatory protein
D Rta_04090 rep; Candidate ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D Rta_18860 dinG; Candidate ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D Rta_30920 lhr; Candidate large helicase-related protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D Rta_34530 nrdA; Candidate ribonucleoside-diphosphate reductase, alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Rta_34540 nrdB; Candidate ribonucleoside reductase, beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:rta03029]
D Rta_08430 petB; Candidate cytochrome b, membrane protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D Rta_19590 infB; Candidate translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D Rta_17780 infC; candidate translation initiation factor 3 (IF-3) K02520 infC; translation initiation factor IF-3
D Rta_17440 tsf; candidate elongation factor Ts K02357 tsf; elongation factor Ts
D Rta_03240 tuf; Candidate Elongation factor Tu K02358 tuf; elongation factor Tu
D Rta_35760 tuf; Candidate elongation factor Tu K02358 tuf; elongation factor Tu
D Rta_03230 fusA; Candidate Elongation factor G K02355 fusA; elongation factor G
D Rta_28400 era; Candidate GTP-binding protein K03595 era; GTPase
D Rta_07080 tyrS; Candidate Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Rta_02310 leuS; Candidate Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Rta_31160 aspS; candidate aspartyl-tRNA synthetase (Aspartate--tRNA ligase) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Rta_02780 argS; Candidate Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Rta_03860 gatA; Candidate Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Rta_29340 amidase-like protein K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Rta_33380 gatA; candidate glutamyl-tRNA(GLN) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Rta_17420 amidase-like protein K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Rta_03870 gatB; Candidate Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Rta_03850 gatC; Candidate Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Rta_02040 ssb; Candidate single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Rta_17510 omp85; Candidate Outer membrane protein insertion machinery protein Omp85 K07277 SAM50; outer membrane protein insertion porin family
D Rta_25080 dnaK; Candidate heat shock protein, HSP70 family K04043 dnaK; molecular chaperone DnaK
D Rta_25070 grpE; Candidate heat shock protein, HSP70 cofactor K03687 GRPE; molecular chaperone GrpE
D Rta_35150 groL; groEL protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rta_35140 groS; groES protein K04078 groES; chaperonin GroES
D Rta_25090 dnaJ; Candidate heat shock protein J K03686 dnaJ; molecular chaperone DnaJ
D Rta_18360 iscS; Candidate cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Rta_18390 hscB; Candidate co-chaperone, DnaJ family K04082 hscB; molecular chaperone HscB
D Rta_29030 conserved hypothetical protein K07390 grxD; monothiol glutaredoxin
D Rta_30610 ATP-binding protein-like protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Rta_33660 ctaB; candidate protoheme IX farnesyltransferase (Heme O synthase), membrane protein K02257 COX10; heme o synthase [EC:2.5.1.141]
D Rta_33730 ctaG; candidate cytochrome C oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D Rta_33670 cytochrome AA3 controlling protein, membrane protein-like protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D Rta_38210 Candidate preprotein translocase subunit K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Rta_33690 cytochrome oxidase complex biogenesis factor-like protein K14998 SURF1; surfeit locus 1 family protein
D Rta_33650 SCO1/2 family protein-like protein K07152 SCO1; protein SCO1
D Rta_34810 htpG; Candidate heat shock protein, HSP90 family K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:rta02000]
D Rta_21110 candidate ABC type multidrug transport system, ATP-binding and permease components K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D Rta_27740 candidate ABC type bacteriocin/lantibiotic exporters, ATP-binding and permease domains K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D Rta_09310 candidate ABC type transport system involved in Fe S cluster assembly, permease and ATPase components K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D Rta_14870 candidate ABC type multidrug transport system, ATP-binding and permease components K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D Rta_26260 candidate ABC type multidrug transport system, ATP-binding and permease components K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Rta_01360 candidate ABC type multidrug transport system, ATP-binding and permease components K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Rta_05440 candidate ABC transporter, ATP-binding component with duplicated domains K15738 uup; ABC transport system ATP-binding/permease protein
D Rta_20510 candidate ABC type sulfate transport systems, periplasmic component K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D Rta_22570 candidate ABC type sulfate transport systems, periplasmic component K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Rta_20500 candidate ABC type sulfate transport systems, permease component K02046 cysU; sulfate/thiosulfate transport system permease protein
D Rta_20490 candidate ABC type sulfate transport systems, permease component K02047 cysW; sulfate/thiosulfate transport system permease protein
D Rta_20480 candidate ABC type sulfate/molybdate transport systems, ATP-binding component K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Rta_34800 periplasmic component of an ABC type molybdate transport system-like protein K02020 modA; molybdate transport system substrate-binding protein
D Rta_24810 periplasmic component of an ABC type molybdate transport system-like protein K02020 modA; molybdate transport system substrate-binding protein
D Rta_13320 candidate ABC type molybdate transport system, periplasmic component K02020 modA; molybdate transport system substrate-binding protein
D Rta_13310 candidate ABC type molybdate transport system, permease component K02018 modB; molybdate transport system permease protein
D Rta_13300 candidate ABC type molybdate transport system, ATP-binding component K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Rta_13250 candidate ABC transporter probably involved in tungstate transport, periplasmic component K05772 tupA; tungstate transport system substrate-binding protein
D Rta_13230 candidate ABC transporter probably involved in tungstate transport, permease component K05773 tupB; tungstate transport system permease protein
D Rta_13240 candidate ABC transporter probably involved in tungstate transport, ATP-binding component K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D Rta_26570 candidate ABC transporter probably involved in nitrate transport, periplasmic component K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D Rta_26580 candidate ABC transporter probably involved in nitrate transport, permease component K15577 nrtB; nitrate/nitrite transport system permease protein
D Rta_26590 candidate ABC transporter probably involved in nitrate transport, ATP-binding component K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D Rta_23260 candidate ABC type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein
D Rta_15860 candidate ABC type Fe3+ transport system, periplasmic component K02012 afuA; iron(III) transport system substrate-binding protein
D Rta_24660 candidate ABC type Fe3+ transport system K02012 afuA; iron(III) transport system substrate-binding protein
D Rta_15870 candidate ABC type Fe3+ transport system, permease component with duplicated domains K02011 afuB; iron(III) transport system permease protein
D Rta_34040 candidate ABC type Fe3+ transport system, permease component with duplicated domains K02011 afuB; iron(III) transport system permease protein
D Rta_15880 afuC; candidate ABC transporter, ATP-binding component probably involved in an Fe3+ transport system K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D Rta_34050 candidate ABC transporter, ATP-binding component probably involved in an Fe3+ transport system K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D Rta_03900 candidate ABC transporter, periplasmic component, uncharacterized transport function K05777 ynjB; putative thiamine transport system substrate-binding protein
D Rta_03910 candidate ABC transporter, permease component with duplicated permease domains, uncharacterized transport function K05778 ynjC; putative thiamine transport system permease protein
D Rta_03920 candidate ABC transporter, ATP-binding component, uncharacterized transport function K05779 ynjD; putative thiamine transport system ATP-binding protein
D Rta_32690 candidate ABC type nitrate/sulfonate/bicarbonate transport system, periplasmic component K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D Rta_22720 candidate ABC type nitrate/sulfonate/bicarbonate transport system, periplasmic component K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D Rta_32710 candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Rta_22730 candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Rta_32700 candidate ABC type nitrate/sulfonate/bicarbonate transport system, ATP-binding component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D Rta_27240 candidate ABC type nitrate/sulfonate/bicarbonate transport system, ATP-binding component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D Rta_22740 candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D Rta_29980 candidate ABC type sugar transport system, ATP-binding component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rta_30020 candidate ABC type sugar transport system, periplasmic component K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D Rta_30010 candidate ABC type sugar transport system, permease component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D Rta_30000 candidate ABC type sugar transport system, permease component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D Rta_07300 candidate Ribose/xylose/arabinose/galactoside ABC type transport system, periplasmic component K10439 rbsB; ribose transport system substrate-binding protein
D Rta_07290 candidate Ribose/xylose/arabinose/galactoside ABC type transport system, permease component K10440 rbsC; ribose transport system permease protein
D Rta_07280 candidate Ribose/xylose/arabinose/galactoside ABC type transport system, ATP-binding component with duplicated domains K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Rta_17690 candidate Ribose/xylose/arabinose/galactoside ABC type transport systems, periplasmic component K23508 ytfQ; galactofuranose transport system substrate-binding protein
D Rta_17670 candidate Ribose/xylose/arabinose/galactoside ABC type transport systems, permease component K23509 ytfT; galactofuranose transport system permease protein
D Rta_17660 candidate Ribose/xylose/arabinose/galactoside ABC type transport systems, permease component K23509 ytfT; galactofuranose transport system permease protein
D Rta_17680 pstS; candidate Ribose/xylose/arabinose/galactoside ABC type transport systems, ATP-binding component with duplicated domains K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D Rta_04480 candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, periplasmic component K17321 glpV; glycerol transport system substrate-binding protein
D Rta_04510 candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, permease component K17322 glpP; glycerol transport system permease protein
D Rta_04500 candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, permease component K17323 glpQ; glycerol transport system permease protein
D Rta_04530 candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component K17324 glpS; glycerol transport system ATP-binding protein
D Rta_04520 candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component K17325 glpT; glycerol transport system ATP-binding protein
D Rta_31270 candidate ABC type sugar transport system, periplasmic component K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D Rta_31280 candidate ABC type sugar transport system, permease component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D Rta_31290 candidate ABC type sugar transport system, permease component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D Rta_31300 candidate ABC type sugar transport system, ATP-binding component K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D Rta_21290 candidate Uncharacterized ABC type transport system, periplasmic component K07335 bmpA; basic membrane protein A and related proteins
D Rta_32340 candidate Uncharacterized ABC type transport system, periplasmic component K07335 bmpA; basic membrane protein A and related proteins
D Rta_32220 candidate Uncharacterized ABC type transport system, periplasmic component K07335 bmpA; basic membrane protein A and related proteins
D Rta_21310 candidate Uncharacterized ABC type transport system, permease component K23535 nupB; general nucleoside transport system permease protein
D Rta_32360 candidate Uncharacterized ABC type transport system, permease component K23535 nupB; general nucleoside transport system permease protein
D Rta_21320 candidate Uncharacterized ABC type transport system, permease component K23536 nupC; general nucleoside transport system permease protein
D Rta_32350 candidate Uncharacterized ABC type transport system, permease component K23536 nupC; general nucleoside transport system permease protein
D Rta_21300 candidate Uncharacterized ABC type transport system, ATP-binding component with duplicated domains K23537 nupA; general nucleoside transport system ATP-binding protein
D Rta_32370 candidate Uncharacterized ABC type transport system, ATP-binding component with duplicated domains K23537 nupA; general nucleoside transport system ATP-binding protein
D Rta_08140 ABC transporter periplasmic component-like protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Rta_03020 ABC transporter periplasmic component-like protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Rta_34580 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Rta_08130 candidate ABC transporter, ATP-binding component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Rta_03000 candidate ABC transporter, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Rta_34590 candidate membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Rta_08120 candidate ABC transporter, permease component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Rta_03010 candidate ABC transporter, ATP-binding component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Rta_03030 Conserved hypothetical protein K18480 linN; cholesterol transport system auxiliary component
D Rta_08160 Conserved hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein
D Rta_08170 Hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein
D Rta_23530 candidate ABC type phosphate transport system, periplasmic component K02040 pstS; phosphate transport system substrate-binding protein
D Rta_23520 candidate ABC type phosphate transport system, permease component K02037 pstC; phosphate transport system permease protein
D Rta_23510 candidate ABC type phosphate transport system, permease component K02038 pstA; phosphate transport system permease protein
D Rta_23500 candidate ABC type phosphate transport system, ATP-binding component K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Rta_33570 candidate ABC type phosphate/phosphonate transport systems, periplasmic component K02044 phnD; phosphonate transport system substrate-binding protein
D Rta_22540 candidate ABC type phosphonate transport systems, periplasmic component K02044 phnD; phosphonate transport system substrate-binding protein
D Rta_33540 candidate ABC type phosphate/phosphonate transport systems, permease component K02042 phnE; phosphonate transport system permease protein
D Rta_33550 candidate ABC type phosphate/phosphonate transport systems, permease component K02042 phnE; phosphonate transport system permease protein
D Rta_22530 candidate ABC type phosphonate transport systems, permease component K02042 phnE; phosphonate transport system permease protein
D Rta_33560 candidate ABC type phosphate/phosphonate transport systems, ATP-binding component K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D Rta_22550 candidate ABC type phosphonate transport systems, ATP-binding component K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D Rta_09370 candidate ABC type amino acid transport system, periplasmic component K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D Rta_05330 candidate ABC type amino acid transport system, periplasmic component K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D Rta_09390 candidate ABC type amino acid transport system, permease component K10002 gltK; glutamate/aspartate transport system permease protein
D Rta_09380 candidate ABC type amino acid transport system, permease component K10003 gltJ; glutamate/aspartate transport system permease protein
D Rta_09400 candidate ABC type amino acid transport system, ATP-binding component K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D Rta_34970 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_26520 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_18530 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_10060 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_22350 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_15620 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_19450 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_20110 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_12220 candidate ABC type branched chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_22850 hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_07550 candidate ABC type branched chain amino acid transport system, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rta_34950 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_18520 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_10050 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_22360 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_15660 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_07600 candidate ABC type branched chain amino acid transport system, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_20100 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_12260 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_31610 candidate ABC type branched chain amino acid transport systems, permease component K01997 livH; branched-chain amino acid transport system permease protein
D Rta_07610 candidate ABC type branched chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_10040 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_12250 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_31600 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_18510 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_20090 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_22370 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_15670 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_34960 candidate ABC type branched chain amino acid transport systems, permease component K01998 livM; branched-chain amino acid transport system permease protein
D Rta_34940 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_18500 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_10080 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_22380 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_15640 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_07580 candidate ABC type branched chain amino acid transport system, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_20080 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_12240 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_31590 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rta_07590 candidate ABC type branched chain amino acid transport system, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_10070 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_12230 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_31580 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_18490 livF; candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_20075 livF; Candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_22390 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_15650 livF; candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_34980 candidate ABC type branched chain amino acid transport systems, ATP-binding component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rta_32790 candidate ABC type branched chain amino acid transport systems, periplasmic component K11959 urtA; urea transport system substrate-binding protein
D Rta_32780 candidate ABC type branched chain amino acid transport systems, permease component K11960 urtB; urea transport system permease protein
D Rta_32770 candidate ABC type branched chain amino acid transport systems, permease component K11961 urtC; urea transport system permease protein
D Rta_32760 candidate ABC type branched chain amino acid transport systems, ATP-binding component K11962 urtD; urea transport system ATP-binding protein
D Rta_32750 candidate ABC type branched chain amino acid transport systems, ATP-binding component K11963 urtE; urea transport system ATP-binding protein
D Rta_05200 candidate ABC type amino acid transport system, periplasmic component K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Rta_13980 periplasmic component of an ABC type amino acid transport system-like protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Rta_20260 periplasmic component of an ABC type amino acid transport system-like protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Rta_05180 candidate ABC type amino acid transport system, permease component K02029 ABC.PA.P; polar amino acid transport system permease protein
D Rta_05190 candidate ABC type amino acid transport system, permease component K02029 ABC.PA.P; polar amino acid transport system permease protein
D Rta_05210 candidate ABC type amino acid transport system, ATP-binding component K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Rta_35230 candidate ABC type dipeptide/oligopeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Rta_35260 candidate ABC type dipeptide/oligopeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Rta_33370 candidate ABC type dipeptide/oligopeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Rta_35250 candidate ABC type dipeptide/oligopeptide transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Rta_33330 candidate ABC type dipeptide/oligopeptide transport system, permease component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Rta_35220 dppC; candidate ABC type dipeptide/oligopeptide transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Rta_33340 candidate ABC type dipeptide/oligopeptide transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Rta_35210 dppD; candidate ABC type dipeptide/oligopeptide transport system, ATP-binding component K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Rta_33350 candidate ABC type dipeptide/oligopeptide transport system, ATP-binding component K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Rta_35200 candidate ABC type dipeptide/oligopeptide transport system, ATP-binding component K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Rta_33360 candidate ABC type dipeptide/oligopeptide transport system, ATP-binding component K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Rta_19520 candidate ABC type oligopeptide transport system, periplasmic component K13893 yejA; microcin C transport system substrate-binding protein
D Rta_19530 candidate ABC type oligopeptide transport system, permease component K13894 yejB; microcin C transport system permease protein
D Rta_19540 candidate ABC type oligopeptide transport system, permease component K13895 yejE; microcin C transport system permease protein
D Rta_19550 candidate ABC type oligopeptide transport system, ATP-binding component with duplicated domains K13896 yejF; microcin C transport system ATP-binding protein
D Rta_16360 candidate ABC transporter probably involved in cobalamin transport, periplasmic component K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D Rta_16390 candidate ABC transporter probably involved in cobalamin transport, periplasmic component K25034 btuF; cobalamin transport system substrate-binding protein
D Rta_16400 candidate ABC transporter probably involved in cobalamin transport, permease component K25027 btuC; cobalamin transport system permease protein
D Rta_16410 candidate ABC transporter probably involved in cobalamin transport, ATP-binding component K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D Rta_08890 candidate ABC type polysaccharide/polyol phosphate export systems that might be involved in cell envelope biogenesis, permease component K09690 wzm; homopolymeric O-antigen transport system permease protein
D Rta_08720 candidate ABC type polysaccharide/polyol phosphate export systems that might be involved in cell envelope biogenesis, permease component K09690 wzm; homopolymeric O-antigen transport system permease protein
D Rta_08880 candidate ABC type polysaccharide/polyol phosphate export systems that might be involved in cell envelope biogenesis, ATP-binding component K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D Rta_08730 candidate ABC type polysaccharide/polyol phosphate export systems that might be involved in cell envelope biogenesis, ATP-binding component K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D Rta_19410 candidate permease K07091 lptF; lipopolysaccharide export system permease protein
D Rta_19400 candidate membrane protein K11720 lptG; lipopolysaccharide export system permease protein
D Rta_02820 candidate ATP-binding component of an ABC transporter, unknown function K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D Rta_34650 candidate ABC transporter, permease component probably involved in multidrug transport K09694 nodJ; lipooligosaccharide transport system permease protein
D Rta_34640 candidate ABC type multidrug transport system, ATP-binding component K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D Rta_32050 candidate ABC transporter, permease component K09808 lolC_E; lipoprotein-releasing system permease protein
D Rta_32040 candidate ABC transporter, ATP-binding component K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D Rta_30150 permease component of an ABC transporteur-like protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Rta_30140 permease component of an ABC transporteur-like protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Rta_08190 candidate ABC transporter, multidrug export system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D Rta_30160 candidate ABC type multidrug transport system, ATP-binding component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Rta_08180 candidate ABC transporter, multidrug export system, ATP-binding component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Rta_26120 candidate ABC type transport system, involved in lipoprotein release, permease component with duplicated domains K02004 ABC.CD.P; putative ABC transport system permease protein
D Rta_11080 candidate ABC transporter, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D Rta_30400 candidate Predicted ABC type transport system involved in lysophospholipase L1 biosynthesis, permease component with duplicated domains K02004 ABC.CD.P; putative ABC transport system permease protein
D Rta_26090 candidate ABC type antimicrobial peptide transport system, ATP-binding component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Rta_19170 candidate Predicted ABC type transport system involved in lysophospholipase L1 biosynthesis, ATP-binding component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Rta_11070 candidate ABC transporter, ATP-binding component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Rta_23470 Candidate Na+ driven multidrug efflux K26939 norM; MATE family, multidrug efflux pump
D Rta_11420 candidate membrane protein, related to cation efflux system protein K26937 dinF; MATE family, multidrug efflux pump
D Rta_33460 Candidate Na+ driven multidrug efflux K26937 dinF; MATE family, multidrug efflux pump
D Rta_08050 transporter-like protein K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D Rta_14590 Candidate transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D Rta_01600 Candidate transporter K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D Rta_01960 candidate membrane protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D Rta_12270 Candidate transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D Rta_06410 Candidate transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D Rta_11770 candidate membrane protein, related to efflux protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D Rta_23840 Candidate transporter K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D Rta_15820 Candidate transporter K06902 UMF1; MFS transporter, UMF1 family
D Rta_03460 candidate PTS system, enzyme I component K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Rta_03450 candidate PTS system, HPr-like protein K02784 ptsH; phosphocarrier protein HPr
D Rta_03440 candidate PTS system, enzyme IIA mannose K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Rta_02240 candidate PTS system, enzyme IIA Ntr K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D Rta_27490 potassium ion channel-like protein K10716 kch; voltage-gated potassium channel
D Rta_01450 amtB; Candidate ammonia permease K03320 amt; ammonium transporter, Amt family
D Rta_17050 glutathione S-transferases-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rta_00640 gst; Candidate glutathione S-transferase (Glutathione transferase) K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rta_37240 glutathione S-transferase-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rta_03110 Glutathione S-transferase (Glutathione transferase)-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rta_21500 glutathione S-transferase (Glutathione transferase)-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rta_37490 glutathione S-transferase-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rta_07380 Glutathione S-transferase (Glutathione transferase)-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rta_05380 yliJ; glutathione S-transferase (glutathione S-alkyltransferase)-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rta_08450 sspA; Candidate Stringent starvation protein A K03599 sspA; stringent starvation protein A
D Rta_00560 Hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog
D Rta_32010 conserved hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog
D Rta_06040 Conserved hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog
D Rta_24360 candidate membrane protein K19416 yccA; modulator of FtsH protease
D Rta_24320 tolQ; Candidate biopolymer transport protein K03561 exbB; biopolymer transport protein ExbB
D Rta_02290 tolQ; Candidate biopolymer transport protein K03561 exbB; biopolymer transport protein ExbB
D Rta_21900 tolQ; Candidate biopolymer transport protein K03561 exbB; biopolymer transport protein ExbB
D Rta_21910 exbD; Candidate biopolymer transport protein K03559 exbD; biopolymer transport protein ExbD
D Rta_24330 exbD; Candidate biopolymer transport protein K03559 exbD; biopolymer transport protein ExbD
D Rta_15160 tolQ; Candidate biopolymer transport protein K03562 tolQ; biopolymer transport protein TolQ
D Rta_02300 exbD; Candidate biopolymer transport protein K03560 tolR; biopolymer transport protein TolR
D Rta_15150 exbD; Candidate biopolymer transport protein K03560 tolR; biopolymer transport protein TolR
D Rta_02190 corA; Candidate Mg2+ and Co2+ transporter K03284 corA; magnesium transporter
D Rta_03140 corA; Candidate Mg2+ and Co2+ transporter K03284 corA; magnesium transporter
D Rta_10350 CBS domain proteins-like protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Rta_13150 CBS domain proteins-like protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Rta_13690 ompA; candidate outer membrane protein precursor K03286 TC.OOP; OmpA-OmpF porin, OOP family
D Rta_06540 Hypothetical protein K16078 ail; attachment invasion locus protein
D Rta_34880 outer membrane usher protein-like protein K07347 fimD; outer membrane usher protein
D Rta_16790 hypothetical protein K07347 fimD; outer membrane usher protein
D Rta_36720 esterase-like protein K12686 apeE; outer membrane lipase/esterase
D Rta_24220 outer membrane protein precursor, TonB-dependent receptor-like protein K16090 fiu; catecholate siderophore receptor
D Rta_16350 outer membrane cobalamin receptor protein-like protein K16092 btuB; vitamin B12 transporter
D Rta_24250 outer membrane protein precursor, TonB-dependent receptor-like protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Rta_16540 conserved hypothetical protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Rta_11120 conserved hypothetical protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Rta_30130 outer membrane protein precursor, TonB-dependent receptor-like protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Rta_13430 Candidate outer membrane protein precursorTonB-dependent K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Rta_11010 outer membrane protein-like protein K12340 tolC; outer membrane protein
D Rta_37100 Candidate outer membrane channel K18904 nodT; outer membrane protein, multidrug efflux system
D Rta_10790 polysaccharide export protein-like protein K01991 wza; polysaccharide biosynthesis/export protein
D Rta_17510 omp85; Candidate Outer membrane protein insertion machinery protein Omp85 K07277 SAM50; outer membrane protein insertion porin family
D Rta_18970 conserved hypothetical protein K17713 bamB; outer membrane protein assembly factor BamB
D Rta_25710 Conserved hypothetical protein K07287 bamC; outer membrane protein assembly factor BamC
D Rta_02270 Outer membrane lipoprotein omlA precursor-like protein K06186 bamE; outer membrane protein assembly factor BamE
D Rta_25420 outer membrane protein-like protein K07278 tamA; translocation and assembly module TamA
D Rta_25430 Conserved hypothetical protein K09800 tamB; translocation and assembly module TamB
D Rta_02810 Conserved hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA
D Rta_38150 kdsC; Candidate 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K11719 lptC; lipopolysaccharide export system protein LptC
D Rta_37900 organic solvent tolerance protein precursor-like protein K04744 lptD; LPS-assembly protein
D Rta_02320 rlpB; Candidate Rare lipoprotein B K03643 lptE; LPS-assembly lipoprotein
D Rta_05530 Mg2+/Co2+ transporter CorC-like protein K06189 corC; hemolysin (HlyC) family protein
D Rta_00470 Conserved hypothetical protein K06518 cidA; holin-like protein
D Rta_12890 Candidate metal transporter K16267 zipB; zinc and cadmium transporter
D Rta_15760 Candidate inner membrane transporter K18303 mexK; multidrug efflux pump
D Rta_23190 Candidate inner membrane transporter K18138 acrB; multidrug efflux pump
D Rta_13520 Candidate fused inner/outer membrane transporter K18138 acrB; multidrug efflux pump
D Rta_16510 Candidate inner membrane transporter K07788 mdtB; multidrug efflux pump
D Rta_16520 Candidate inner membrane transporter K07789 mdtC; multidrug efflux pump
D Rta_11150 Candidate transporter K11741 sugE; quaternary ammonium compound-resistance protein SugE
D Rta_24150 dhlC; Candidate sodium ion/solute symporter K14393 actP; cation/acetate symporter
D Rta_12990 Candidate Na+/H+ and K+/H+ antiporter, NhaP type K24160 NHA1; sodium/hydrogen antiporter
D Rta_08370 Candidate membrane component of K+ transport systems, Kef type K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D Rta_38170 Candidate membrane component of K+ transport systems, Kef type K03455 KEA1_2_3; K+:H+ antiporter
D Rta_13170 rosB; Candidate NAD binding component of K+ transport system K26735 KEA4_5_6; K+:H+ antiporter
D Rta_37640 Candidate membrane efflux protein K26731 CHX; K+:H+ antiporter
D Rta_05740 trkG; Candidate membrane component of K+ transport systems K03498 trkH; trk/ktr system potassium uptake protein
D Rta_05730 trkA; Candidate NAD binding component of K+ transport system K03499 trkA; trk/ktr system potassium uptake protein
D Rta_00920 uraA; Candidate xanthine/uracil permease K09016 rutG; putative pyrimidine permease RutG
D Rta_19210 chrA; Candidate chromate transport protein, half length K07240 chrA; chromate transporter
D Rta_19220 chrA; Candidate chromate transport protein, half length K07240 chrA; chromate transporter
D Rta_38020 chrA; Candidate chromate transport protein, full length K07240 chrA; chromate transporter
D Rta_31000 sulP; Candidate sulfate permease K03321 TC.SULP; sulfate permease, SulP family
D Rta_13540 dctQ; Candidate large permease component K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rta_14690 dctQ; Candidate large permease component K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rta_17900 dctQ; Candidate large permease component K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rta_24900 dctQ; Candidate large permease component K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rta_29490 dctQ; Candidate large permease component K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rta_11520 dctQ; Candidate large permease component K21393 yiaN; TRAP-type transport system large permease protein
D Rta_11210 dctQ; Candidate large permease component K21393 yiaN; TRAP-type transport system large permease protein
D Rta_11510 dctM; Candidate small permease component K21394 yiaM; TRAP-type transport system small permease protein
D Rta_09000 dctM; Candidate small permease component K21394 yiaM; TRAP-type transport system small permease protein
D Rta_11530 dctP; Candidate periplasmic component K21395 yiaO; TRAP-type transport system periplasmic protein
D Rta_13480 dctP; Candidate periplasmic component K21395 yiaO; TRAP-type transport system periplasmic protein
D Rta_11220 dctP; Candidate periplasmic component K21395 yiaO; TRAP-type transport system periplasmic protein
D Rta_17890 dctP; Candidate periplasmic component K21395 yiaO; TRAP-type transport system periplasmic protein
D Rta_29480 dctP; Candidate periplasmic component K21395 yiaO; TRAP-type transport system periplasmic protein
D Rta_32510 dctP; Candidate periplasmic component K21395 yiaO; TRAP-type transport system periplasmic protein
D Rta_31810 nptA; Candidate Na+/phosphate symporter K03324 yjbB; phosphate:Na+ symporter
D Rta_06130 Candidate NADH:ubiquinone oxidoreductase subunit 5, chain L K05559 phaA; multicomponent K+:H+ antiporter subunit A
D Rta_06140 Candidate multisubunit Na+/H+ antiporter, MnhC subunit K05560 phaC; multicomponent K+:H+ antiporter subunit C
D Rta_06150 Candidate formate hydrogenlyase, MnhD subunit K05561 phaD; multicomponent K+:H+ antiporter subunit D
D Rta_06160 Candidate ultisubunit Na+/H+ antiporter, MnhE subunit K05562 phaE; multicomponent K+:H+ antiporter subunit E
D Rta_06170 Candidate multisubunit Na+/H+ antiporter, MnhF subunit K05563 phaF; multicomponent K+:H+ antiporter subunit F
D Rta_06180 Candidate multisubunit Na+/H+ antiporter, MnhG subunit K05564 phaG; multicomponent K+:H+ antiporter subunit G
D Rta_27840 Candidate virulence factor K03980 murJ; putative peptidoglycan lipid II flippase
D Rta_04140 Candidate permease K13936 mdcF; malonate transporter and related proteins
D Rta_24880 permease-like protein K13936 mdcF; malonate transporter and related proteins
D Rta_25940 permease-like protein K13936 mdcF; malonate transporter and related proteins
D Rta_26850 kup; Candidate K+ transporter K03549 kup; KUP system potassium uptake protein
D Rta_02420 kup; Candidate K+ transporter K03549 kup; KUP system potassium uptake protein
D Rta_02740 Candidate lysine efflux permease K06895 lysE; L-lysine exporter family protein LysE/ArgO
D Rta_00750 rhtB; Candidate threonine efflux protein K11250 leuE; leucine efflux protein
D Rta_18020 azlC; Candidate branched chain amino acid permease, azaleucine resistance K26605 azlC; branched chain amino acid efflux pump
D Rta_36880 azlC; Candidate branched chain amino acid permease, azaleucine resistance K26605 azlC; branched chain amino acid efflux pump
D Rta_36870 Conserved hypothetical protein K26606 azlD; branched chain amino acid efflux pump
D Rta_18030 candidate membrane protein K26606 azlD; branched chain amino acid efflux pump
D Rta_15570 tctA; Candidate large integral membrane protein K07793 tctA; putative tricarboxylic transport membrane protein
D Rta_11630 tctA; Candidate large integral membrane protein K07793 tctA; putative tricarboxylic transport membrane protein
D Rta_31900 tctA; Candidate large integral membrane protein K07793 tctA; putative tricarboxylic transport membrane protein
D Rta_15560 tctB; Candidate small integral membrane protein K07794 tctB; putative tricarboxylic transport membrane protein
D Rta_31910 tctB; Candidate small integral membrane protein K07794 tctB; putative tricarboxylic transport membrane protein
D Rta_15550 tctC; Candidate extracytoplasmic binding receptor K07795 tctC; putative tricarboxylic transport membrane protein
D Rta_21550 tctC; Candidate extracytoplasmic binding receptor K07795 tctC; putative tricarboxylic transport membrane protein
D Rta_05870 tctC; Candidate extracytoplasmic binding receptor K07795 tctC; putative tricarboxylic transport membrane protein
D Rta_09690 ftsW; Candidate cell division protein (division cell wall cluster) K03588 ftsW; cell division protein FtsW
D Rta_38060 candidate membrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D Rta_09880 candidate periplasmic protein K03832 tonB; periplasmic protein TonB
D Rta_24310 tonB; Candidate energy transducing system K03832 tonB; periplasmic protein TonB
D Rta_21060 pal; Candidate peptidoglycan-associated lipoprotein precursor K03640 pal; peptidoglycan-associated lipoprotein
D Rta_15140 tolA; candidate tolA protein K03646 tolA; colicin import membrane protein
D Rta_21070 tolB; Candidate TolB protein precursor K03641 tolB; TolB protein
D Rta_23060 Candidate inorganic H+ pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D Rta_27730 CyaD protein-like protein K11003 hlyD; membrane fusion protein, hemolysin D
D Rta_35110 Candidate periplasmic linker protein K18901 bpeE; membrane fusion protein, multidrug efflux system
D Rta_15750 Candidate periplasmic linker protein K18302 mexJ; membrane fusion protein, multidrug efflux system
D Rta_13500 Candidate periplasmic linker protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Rta_23200 Candidate periplasmic linker protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Rta_22820 Conserved hypothetical protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Rta_30070 hypothetical protein K19586 oqxA; membrane fusion protein, multidrug efflux system
D Rta_16500 Candidate periplasmic linker protein K07799 mdtA; membrane fusion protein, multidrug efflux system
D Rta_10810 Conserved hypothetical protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D Rta_10800 Conserved hypothetical protein K25590 epsF; protein tyrosine kinase modulator
D Rta_28000 sbmA; Candidate SbmA protein K17938 sbmA; peptide/bleomycin uptake transporter
D Rta_27535 CrtK protein, membrane protein-like protein K05770 TSPO; translocator protein
D Rta_07420 candidate membrane protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D Rta_32640 candidate transthyretin protein precursor K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D Rta_21280 Conserved hypothetical protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:rta02044]
D Rta_27740 candidate ABC type bacteriocin/lantibiotic exporters, ATP-binding and permease domains K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D Rta_27730 CyaD protein-like protein K11003 hlyD; membrane fusion protein, hemolysin D
D Rta_11010 outer membrane protein-like protein K12340 tolC; outer membrane protein
D Rta_23830 gspA; Candidate general secretion pathway protein A K02450 gspA; general secretion pathway protein A
D Rta_23820 general secretion pathway protein B-like protein K02451 gspB; general secretion pathway protein B
D Rta_35320 Conserved hypothetical protein K02452 gspC; general secretion pathway protein C
D Rta_35410 gspD; candidate secretin, general secretion pathway protein D, component of type II secretion system K02453 gspD; general secretion pathway protein D
D Rta_12560 gspD; candidate secretin, general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D Rta_35420 gspE; candidate general secretion pathway protein E (Type II traffic warden ATPase), component of type II secretion system K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Rta_31940 type IV pilus assembly protein tapB-like protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Rta_12600 gspE; candidate general secretion pathway protein E (Type II traffic warden ATPase) K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Rta_35060 gspF; candidate general secretion pathway protein F, component of type II secretion system K02455 gspF; general secretion pathway protein F
D Rta_12610 gspF; candidate general secretion pathway protein F K02455 gspF; general secretion pathway protein F
D Rta_35330 gspG; candidate pseudopilin, general secretion pathway protein G precursor (PilD-dependent protein), component of type II secretion system K02456 gspG; general secretion pathway protein G
D Rta_12570 gspH; candidate pseudopilin, general secretion pathway protein H precursor K02456 gspG; general secretion pathway protein G
D Rta_12575 pseudopilin, general secretion pathway protein G precursor-like protein K02456 gspG; general secretion pathway protein G
D Rta_12620 gspG; candidate pseudopilin, general secretion pathway protein G precursor K02456 gspG; general secretion pathway protein G
D Rta_35340 gspH; candidate pseudopilin, general secretion pathway protein H precursor (PilD-dependent protein), component of type II secretion system K02457 gspH; general secretion pathway protein H
D Rta_35350 gspI; candidate pseudopilin, general secretion pathway protein I precursor (PilD-dependent protein), component of type II secretion system K02458 gspI; general secretion pathway protein I
D Rta_35360 gspJ; candidate pseudopilin, general secretion pathway protein J precursor (PilD-dependent protein), component of type II secretion system K02459 gspJ; general secretion pathway protein J
D Rta_35370 gspK; candidate pseudopilin, general secretion pathway protein K precursor (PilD-dependent protein), component of type II secretion system K02460 gspK; general secretion pathway protein K
D Rta_35380 gspL; candidate general secretion pathway protein L, component of type II secretion system K02461 gspL; general secretion pathway protein L
D Rta_35390 gspM; candidate general secretion pathway protein M, component of type II secretion system K02462 gspM; general secretion pathway protein M
D Rta_35400 gspC; candidate general secretion pathway protein C, component of type II secretion system K02463 gspN; general secretion pathway protein N
D Rta_29160 pilD; candidate type 4 prepilin-like proteins leader peptide processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Rta_37340 type 4 fimbrial precursor PilA-like protein K02650 pilA; type IV pilus assembly protein PilA
D Rta_29140 pilB; candidate type 4 fimbrial assembly protein pilB, putative traffic ATPase K02652 pilB; type IV pilus assembly protein PilB
D Rta_29150 pilC; candidate type 4 fimbrial assembly protein pilC, gspF family K02653 pilC; type IV pilus assembly protein PilC
D Rta_12290 pilA; candidate type 4 fimbrial pilin protein K02655 pilE; type IV pilus assembly protein PilE
D Rta_15240 type 4 fimbrial biogenesis protein PilE-like protein K02655 pilE; type IV pilus assembly protein PilE
D Rta_18920 type 4 fimbrial biogenesis protein PilF-like protein K02656 pilF; type IV pilus assembly protein PilF
D Rta_34170 candidate response regulator, CheY K02657 pilG; twitching motility two-component system response regulator PilG
D Rta_34160 candidate response regulator, CheY K02658 pilH; twitching motility two-component system response regulator PilH
D Rta_19300 candidate response regulator, CheY K02658 pilH; twitching motility two-component system response regulator PilH
D Rta_19290 candidate response regulator, CheY K02658 pilH; twitching motility two-component system response regulator PilH
D Rta_34150 pilI; Candidate twitching motility protein, chemotaxis protein cheW K02659 pilI; twitching motility protein PilI
D Rta_19310 pilI; Candidate twitching motility protein, chemotaxis protein cheW K02659 pilI; twitching motility protein PilI
D Rta_34140 pilJ; Candidate twitching motility protein, methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D Rta_19320 pilJ; Candidate twitching motility protein, methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D Rta_07960 pilM; Candidate type IV pilus assembly protein K02662 pilM; type IV pilus assembly protein PilM
D Rta_07970 pilN; Candidate Tfp pilus assembly protein PilN K02663 pilN; type IV pilus assembly protein PilN
D Rta_07980 pilO; Candidate Tfp pilus assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO
D Rta_07990 pilP; Candidate type IV pilus assembly protein PilP, putative lipoprotein of the pilotin family K02665 pilP; type IV pilus assembly protein PilP
D Rta_08000 pilQ; Candidate Fimbrial assembly protein pilQ precursor, secretin family K02666 pilQ; type IV pilus assembly protein PilQ
D Rta_04730 pilT; candidate type 4 fimbrial assembly protein pilT, putative traffic ATPase K02669 pilT; twitching motility protein PilT
D Rta_04740 pilU; candidate type 4 fimbrial assembly protein pilU, putative traffic ATPase K02670 pilU; twitching motility protein PilU
D Rta_21000 twitching mobility protein-like protein K02670 pilU; twitching motility protein PilU
D Rta_12310 hypothetical protein K02671 pilV; type IV pilus assembly protein PilV
D Rta_15250 type 4 fimbrial biogenesis protein-like protein K02671 pilV; type IV pilus assembly protein PilV
D Rta_12320 hypothetical protein K02672 pilW; type IV pilus assembly protein PilW
D Rta_15260 type 4 fimbrial biogenesis protein PilW-like protein K02672 pilW; type IV pilus assembly protein PilW
D Rta_12330 hypothetical protein K02673 pilX; type IV pilus assembly protein PilX
D Rta_12340 conserved hypothetical protein K02674 pilY1; type IV pilus assembly protein PilY1
D Rta_15280 type 4 fimbrial biogenesis protein PilY1-like protein K02674 pilY1; type IV pilus assembly protein PilY1
D Rta_19820 Candidate type 4 fimbrial biogenesis protein PilZ K02676 pilZ; type IV pilus assembly protein PilZ
D Rta_12300 conserved hypothetical protein K08084 fimT; type IV fimbrial biogenesis protein FimT
D Rta_15290 type 4 fimbrial pilin-like protein K08084 fimT; type IV fimbrial biogenesis protein FimT
D Rta_15300 type 4 fimbrial pilin-like protein K08084 fimT; type IV fimbrial biogenesis protein FimT
D Rta_28190 Conserved hypothetical protein K08086 fimV; pilus assembly protein FimV
D Rta_28250 conserved hypothetical protein K02221 yggT; YggT family protein
D Rta_13580 Conserved hypothetical protein K02237 comEA; competence protein ComEA
D Rta_25370 DNA internalization-related competence protein-like protein K02238 comEC; competence protein ComEC
D Rta_29930 type III secretion outer membrane protein PscC-like protein K03219 yscC; type III secretion protein C
D Rta_29920 conserved hypothetical protein K03220 yscD; type III secretion protein D
D Rta_29850 conserved hypothetical protein K03222 yscJ; type III secretion protein J
D Rta_29830 conserved hypothetical protein K03223 yscL; type III secretion protein L
D Rta_29820 flagellar biosynthesis/type III secretory pathway ATPase-like protein K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D Rta_29690 translocation protein in type III secretion-like protein K03225 yscQ; type III secretion protein Q
D Rta_29680 Candidate translocation protein in type III secretion, membrane protein K03226 yscR; type III secretion protein R
D Rta_29670 Candidate translocation protein in type III secretion K03227 yscS; type III secretion protein S
D Rta_29800 translocation protein-like protein K03228 yscT; type III secretion protein T
D Rta_29720 Candidate translocation protein in type III secretion, membrane protein K03229 yscU; type III secretion protein U
D Rta_29710 Candidate type III secretory apparatus protein PcrD, membrane protein K03230 yscV; type III secretion protein V
D Rta_29870 hypothetical protein K18373 hrpB1; type III secretion protein HrpB1
D Rta_29970 hypothetical protein K18373 hrpB1; type III secretion protein HrpB1
D Rta_29860 hypothetical protein K18374 hrpB2; type III secretion inner rod protein HrpB2
D Rta_29700 conserved hypothetical protein K18381 hpaC; type III secretion control protein HpaP
D Rta_34310 dsbC; Candidate Thiol:disulfide interchange protein dsbC precursor K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D Rta_36720 esterase-like protein K12686 apeE; outer membrane lipase/esterase
D Rta_31530 conserved hypothetical protein K11891 impL; type VI secretion system protein ImpL
D Rta_34870 pili assembly chaperone protein-like protein K07346 fimC; fimbrial chaperone protein
D Rta_34880 outer membrane usher protein-like protein K07347 fimD; outer membrane usher protein
D Rta_16790 hypothetical protein K07347 fimD; outer membrane usher protein
D Rta_08480 secA; Candidate preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Rta_30740 secB; Candidate protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D Rta_36970 Candidate preprotein translocase, subunit SecD K03072 secD; preprotein translocase subunit SecD
D Rta_35750 secE; Candidate preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D Rta_36960 Candidate preprotein translocase, subunit SecF K03074 secF; preprotein translocase subunit SecF
D Rta_26440 Candidate preprotein translocase, subunit SecG K03075 secG; preprotein translocase subunit SecG
D Rta_36110 secY; Candidate preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D Rta_34470 ffh; Candidate signal recognition particle protein SR54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Rta_33520 ftsY; Candidate Cell division protein ftsY K03110 ftsY; fused signal recognition particle receptor
D Rta_36980 conserved hypothetical protein K03210 yajC; preprotein translocase subunit YajC
D Rta_38210 Candidate preprotein translocase subunit K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Rta_08340 Candidate Sec independent protein secretion pathway, components TatA K03116 tatA; sec-independent protein translocase protein TatA
D Rta_08350 Candidate Sec independent protein secretion pathway, components TatB K03117 tatB; sec-independent protein translocase protein TatB
D Rta_08360 Candidate Sec independent protein secretion pathway, components TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:rta02042]
D Rta_10350 CBS domain proteins-like protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Rta_13150 CBS domain proteins-like protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:rta02022]
D Rta_23475 candidate histidine kinase, classic K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Rta_23480 candidate response regulator, OmpR K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D Rta_23320 candidate response regulator, CheY K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D Rta_17280 candidate histidine kinase, classic K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D Rta_17290 candidate response regulator, OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D Rta_00600 candidate histidine kinase, classic K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D Rta_00610 candidate response regulator, OmpR K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D Rta_26830 candidate histidine kinase, classic K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D Rta_26840 candidate response regulator, OmpR K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Rta_08940 candidate histidine kinase, classic K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D Rta_15530 candidate histidine kinase, classic K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D Rta_15540 candidate response regulator, OmpR K07774 tctD; two-component system, OmpR family, response regulator TctD
D Rta_28790 candidate histidine kinase, classic K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D Rta_34830 candidate histidine kinase, classic K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D Rta_28780 candidate response regulator, OmpR K02483 K02483; two-component system, OmpR family, response regulator
D Rta_34840 candidate response regulator, OmpR K02483 K02483; two-component system, OmpR family, response regulator
D Rta_37470 candidate response regulator, OmpR K02483 K02483; two-component system, OmpR family, response regulator
D Rta_12780 candidate response regulator, CheY K02483 K02483; two-component system, OmpR family, response regulator
D Rta_08930 candidate response regulator, OmpR K02483 K02483; two-component system, OmpR family, response regulator
D Rta_04200 candidate response regulator, CheY K20264 fusR; two-component system, NarL family, response regulator FusR
D Rta_28820 candidate response regulator, NarL K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Rta_30840 candidate response regulator, NarL K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Rta_28760 candidate histidine kinase, classic K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D Rta_28750 candidate response regulator, LytTR K08083 algR; two-component system, LytTR family, response regulator AlgR
D Rta_14440 candidate histidine kinase, classic K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D Rta_14450 candidate response regulator, NtrC K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D Rta_35640 candidate histidine kinase, classic K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D Rta_35630 candidate response regulator, Fis K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D Rta_10230 candidate response regulator, NtrC K07714 atoC; two-component system, NtrC family, response regulator AtoC
D Rta_34500 candidate histidine kinase, classic K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D Rta_34510 candidate response regulator, NtrC K02667 pilR; two-component system, NtrC family, response regulator PilR
D Rta_34400 candidate histidine kinase, classic K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D Rta_34420 candidate response regulator, NtrC K07715 glrR; two-component system, NtrC family, response regulator GlrR
D Rta_30540 candidate histidine kinase, classic K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Rta_04400 protein-glutamate methylesterase (protein methylesterase)-like protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Rta_04410 candidate histidine kinase, hybrid K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Rta_34130 candidate histidine kinase, CheA K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D Rta_34170 candidate response regulator, CheY K02657 pilG; twitching motility two-component system response regulator PilG
D Rta_34160 candidate response regulator, CheY K02658 pilH; twitching motility two-component system response regulator PilH
D Rta_19300 candidate response regulator, CheY K02658 pilH; twitching motility two-component system response regulator PilH
D Rta_19290 candidate response regulator, CheY K02658 pilH; twitching motility two-component system response regulator PilH
D Rta_25470 candidate histidine kinase, classic K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D Rta_08510 candidate histidine kinase, classic K10916 cqsS; two-component system, CAI-1 autoinducer sensor kinase/phosphatase CqsS [EC:2.7.13.3 3.1.3.-]
D Rta_37050 candidate histidine kinase, classic K11711 dctS; two-component system, LuxR family, sensor histidine kinase DctS [EC:2.7.13.3]
D Rta_37040 candidate response regulator, NarL K11712 dctR; two-component system, LuxR family, response regulator DctR
D Rta_20140 candidate histidine kinase, atypical hybrid K19622 phcR; two-component system, response regulator PhcR
D Rta_26560 regulator protein (RNA-binding positive regulator), ANTAR domain-like protein K07183 nasT; two-component system, response regulator / RNA-binding antiterminator
D Rta_33830 candidate histidine kinase, unorthodox K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 02035 Bacterial motility proteins [BR:rta02035]
D Rta_04400 protein-glutamate methylesterase (protein methylesterase)-like protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Rta_04410 candidate histidine kinase, hybrid K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Rta_34170 candidate response regulator, CheY K02657 pilG; twitching motility two-component system response regulator PilG
D Rta_34160 candidate response regulator, CheY K02658 pilH; twitching motility two-component system response regulator PilH
D Rta_19300 candidate response regulator, CheY K02658 pilH; twitching motility two-component system response regulator PilH
D Rta_19290 candidate response regulator, CheY K02658 pilH; twitching motility two-component system response regulator PilH
D Rta_34150 pilI; Candidate twitching motility protein, chemotaxis protein cheW K02659 pilI; twitching motility protein PilI
D Rta_19310 pilI; Candidate twitching motility protein, chemotaxis protein cheW K02659 pilI; twitching motility protein PilI
D Rta_34140 pilJ; Candidate twitching motility protein, methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D Rta_19320 pilJ; Candidate twitching motility protein, methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ
D Rta_34130 candidate histidine kinase, CheA K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D Rta_34510 candidate response regulator, NtrC K02667 pilR; two-component system, NtrC family, response regulator PilR
D Rta_34500 candidate histidine kinase, classic K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D Rta_04730 pilT; candidate type 4 fimbrial assembly protein pilT, putative traffic ATPase K02669 pilT; twitching motility protein PilT
D Rta_04740 pilU; candidate type 4 fimbrial assembly protein pilU, putative traffic ATPase K02670 pilU; twitching motility protein PilU
D Rta_21000 twitching mobility protein-like protein K02670 pilU; twitching motility protein PilU
D Rta_37340 type 4 fimbrial precursor PilA-like protein K02650 pilA; type IV pilus assembly protein PilA
D Rta_29140 pilB; candidate type 4 fimbrial assembly protein pilB, putative traffic ATPase K02652 pilB; type IV pilus assembly protein PilB
D Rta_29150 pilC; candidate type 4 fimbrial assembly protein pilC, gspF family K02653 pilC; type IV pilus assembly protein PilC
D Rta_29160 pilD; candidate type 4 prepilin-like proteins leader peptide processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Rta_18920 type 4 fimbrial biogenesis protein PilF-like protein K02656 pilF; type IV pilus assembly protein PilF
D Rta_08000 pilQ; Candidate Fimbrial assembly protein pilQ precursor, secretin family K02666 pilQ; type IV pilus assembly protein PilQ
D Rta_07990 pilP; Candidate type IV pilus assembly protein PilP, putative lipoprotein of the pilotin family K02665 pilP; type IV pilus assembly protein PilP
D Rta_07980 pilO; Candidate Tfp pilus assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO
D Rta_07970 pilN; Candidate Tfp pilus assembly protein PilN K02663 pilN; type IV pilus assembly protein PilN
D Rta_07960 pilM; Candidate type IV pilus assembly protein K02662 pilM; type IV pilus assembly protein PilM
D Rta_19820 Candidate type 4 fimbrial biogenesis protein PilZ K02676 pilZ; type IV pilus assembly protein PilZ
D Rta_12310 hypothetical protein K02671 pilV; type IV pilus assembly protein PilV
D Rta_15250 type 4 fimbrial biogenesis protein-like protein K02671 pilV; type IV pilus assembly protein PilV
D Rta_12320 hypothetical protein K02672 pilW; type IV pilus assembly protein PilW
D Rta_15260 type 4 fimbrial biogenesis protein PilW-like protein K02672 pilW; type IV pilus assembly protein PilW
D Rta_12330 hypothetical protein K02673 pilX; type IV pilus assembly protein PilX
D Rta_12340 conserved hypothetical protein K02674 pilY1; type IV pilus assembly protein PilY1
D Rta_15280 type 4 fimbrial biogenesis protein PilY1-like protein K02674 pilY1; type IV pilus assembly protein PilY1
D Rta_12290 pilA; candidate type 4 fimbrial pilin protein K02655 pilE; type IV pilus assembly protein PilE
D Rta_15240 type 4 fimbrial biogenesis protein PilE-like protein K02655 pilE; type IV pilus assembly protein PilE
D Rta_34870 pili assembly chaperone protein-like protein K07346 fimC; fimbrial chaperone protein
D Rta_34880 outer membrane usher protein-like protein K07347 fimD; outer membrane usher protein
D Rta_16790 hypothetical protein K07347 fimD; outer membrane usher protein
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:rta04812]
D Rta_03840 mreB; Candidate cell morphogenesis actin-like ATPase K03569 mreB; rod shape-determining protein MreB and related proteins
D Rta_09750 ftsZ; Candidate cell division tubulin-like GTPase K03531 ftsZ; cell division protein FtsZ
D Rta_09740 ftsA; Candidate cell division actin-like ATPase K03590 ftsA; cell division protein FtsA
D Rta_00360 minC; Candidate septum formation inhibitor K03610 minC; septum site-determining protein MinC
D Rta_00350 minD; Candidate septum formation inhibitor-activating ATPase K03609 minD; septum site-determining protein MinD
D Rta_00340 minE; Candidate septum formation topological specificity factor K03608 minE; cell division topological specificity factor
D Rta_00760 parA; Candidate chromosome partitioning protein A K03496 parA; chromosome partitioning protein
D Rta_33820 chromosome partitioning protein-like protein K03496 parA; chromosome partitioning protein
D Rta_27820 chromosome partitioning protein-like protein K03496 parA; chromosome partitioning protein
D Rta_00780 parB; Candidate chromosome partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:rta04147]
D Rta_34810 htpG; Candidate heat shock protein, HSP90 family K04079 HSP90A; molecular chaperone HtpG
D Rta_25820 eno; 2-phospho-D-glycerate hydro-lyase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Rta_37760 gapA; candidate glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Rta_36850 pgk; Candidate phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Rta_36840 pykA; Candidate pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Rta_15380 Rotamase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Rta_35150 groL; groEL protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rta_25080 dnaK; Candidate heat shock protein, HSP70 family K04043 dnaK; molecular chaperone DnaK
D Rta_35160 pgi; Phosphohexose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Rta_17730 gluconolactonase precursor-like protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D Rta_19700 guaB; candidate Inosine-5 -monophosphate dehydrogenase (IMP dehydrogenase) K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Rta_03240 tuf; Candidate Elongation factor Tu K02358 tuf; elongation factor Tu
D Rta_35760 tuf; Candidate elongation factor Tu K02358 tuf; elongation factor Tu
D Rta_08330 Conserved hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Rta_34930 long-chain-fatty-acid--CoA ligase-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_02130 long-chain-fatty-acid--CoA ligase-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_05450 long-chain-fatty-acid--CoA ligase-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_04180 4-coumarate--CoA ligase (4-coumaroyl-CoA synthase)-like protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rta_18100 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_05680 Acetyl-CoA C-acetyltransferase-like protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_20040 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rta_06910 ahcY; Candidate Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Rta_21950 adk; Candidate adenylate kinase (ATP-AMP transphosphorylase) K00939 adk; adenylate kinase [EC:2.7.4.3]
D Rta_28770 argH; candidate argininosuccinate lyase (Arginosuccinase) K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Rta_10600 argG; candidate argininosuccinate synthase (Citrulline--aspartate ligase) K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Rta_10380 D-fructose-1,6-bisphosphate 1-phosphohydrolase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Rta_05040 galK; candidate galactokinase (Galactose kinase) K00849 galK; galactokinase [EC:2.7.1.6]
D Rta_04560 glpK; ATP:glycerol 3-phosphotransferase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Rta_14420 glnA; candidate glutamine synthetase (Glutamate--ammonia ligase) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_17990 glutamine synthetase (Glutamate--ammonia ligase)-like protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_37590 glutamine synthetase (Glutamate--ammonia ligase)-like protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rta_03150 hemB; Candidate Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Rta_05500 Candidate 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D Rta_12170 Pterin carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D Rta_13940 D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_11230 D-3-phosphoglycerate dehydrogenase (Phosphoglycerate dehydrogenase)-like protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_16870 serA; candidate D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_21540 D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_22020 D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rta_34240 purH; candidate bifunctional purine biosynthesis protein : Phosphoribosylaminoimidazolecarboxamide formyltransferase; IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Rta_12180 candidate membrane protein, related to protease K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D Rta_18700 Candidate dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_18810 Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_10510 lpd; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rta_25180 Candidate electron transfer flavoprotein alpha-subunit (Electron transfer flavoprotein large subunit) K03522 fixB; electron transfer flavoprotein alpha subunit
D Rta_35180 zwf; Candidate glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Rta_26450 Triose-phosphate isomerase (Triosephosphate isomerase)-like protein K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Rta_30770 gpmA; candidate 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (Phosphoglyceromutase) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:rta02048]
D Rta_34740 CRISPR-associated protein Cas1-like protein K15342 cas1; CRISP-associated protein Cas1
D Rta_34750 CRISPR-associated protein Cas2-like protein K09951 cas2; CRISPR-associated protein Cas2
D Rta_34690 conserved hypothetical protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D Rta_34730 Conserved hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Rta_34710 conserved hypothetical protein K19117 csd1; CRISPR-associated protein Csd1
D Rta_34720 CRISPR-associated protein-like protein K19118 csd2; CRISPR-associated protein Csd2
D Rta_34700 conserved hypothetical protein K19119 cas5d; CRISPR-associated protein Cas5d
D Rta_21360 type I site-specific deoxyribonuclease-like protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Rta_12520 hsdR; Candidate type I site-specific restriction-modification system, R subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Rta_21400 type I restriction enzyme EcoKI specificity protein-like protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Rta_12540 hsdS; Candidate type I restriction-modification, DNA specificity subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Rta_12530 hsdM; Candidate type I site-specific restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Rta_21410 type I restriction enzyme M protein-like protein K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Rta_00075 5-methylcytosine-specific restriction enzyme B-like protein K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D Rta_05820 Hypothetical protein K07448 mrr; restriction system protein
D Rta_27520 Hypothetical protein K07448 mrr; restriction system protein
D Rta_26130 Conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D Rta_01660 Conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D Rta_29280 conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D Rta_31140 cytotoxic protein ccdB (LetB protein)-like protein K19163 ccdB; toxin CcdB
D Rta_21370 cytotoxic protein ccdB-like protein K19163 ccdB; toxin CcdB
D Rta_21380 Conserved hypothetical protein K19164 ccdA; antitoxin CcdA
D Rta_11130 death on curing protein-like protein K07341 doc; death on curing protein
D Rta_02400 Hypothetical protein K07334 higB-1; toxin HigB-1
D Rta_02390 transcriptional regulator, XRE family-like protein K21498 higA-1; antitoxin HigA-1
D Rta_09810 conserved hypothetical protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D Rta_09820 virulence-associated protein-like protein K18829 mvpT; antitoxin VapB
D Rta_24020 plasmid stability protein stbB-like protein K07062 fitB; toxin FitB [EC:3.1.-.-]
D Rta_33530 plasmid stability protein-like protein K07062 fitB; toxin FitB [EC:3.1.-.-]
D Rta_18210 conserved hypothetical protein K07062 fitB; toxin FitB [EC:3.1.-.-]
D Rta_18200 conserved hypothetical protein K21495 fitA; antitoxin FitA
D Rta_01690 Hypothetical protein K21495 fitA; antitoxin FitA
D Rta_09750 ftsZ; Candidate cell division tubulin-like GTPase K03531 ftsZ; cell division protein FtsZ
D Rta_03840 mreB; Candidate cell morphogenesis actin-like ATPase K03569 mreB; rod shape-determining protein MreB and related proteins
D Rta_25620 parC; Candidate DNA topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Rta_25650 parE; Candidate DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Rta_10710 gltX; candidate glutamyl-tRNA synthetase (Glutamate--tRNA ligase) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rta_28120 Conserved hypothetical protein K09159 cptB; antitoxin CptB
D Rta_18360 iscS; Candidate cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides [BR:rta04052]
D Rta_08630 Candidate Acyl-CoA-binding protein K08762 DBI; diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein)
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:rta04090]
C 01504 Antimicrobial resistance genes [BR:rta01504]
D Rta_21470 Candidate aminoglycoside N(3)-acetyltransferase III (ACC(3)-III) K00662 aacC; aminoglycoside 3-N-acetyltransferase [EC:2.3.1.81]
D Rta_21770 beta-lactamase precursor (Penicillinase)-like protein K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Rta_27390 bla; Cephalosporinase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Rta_21760 beta-lactamase precursor (Penicillinase)-like protein K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D Rta_13500 Candidate periplasmic linker protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Rta_23200 Candidate periplasmic linker protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Rta_22820 Conserved hypothetical protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Rta_23190 Candidate inner membrane transporter K18138 acrB; multidrug efflux pump
D Rta_13520 Candidate fused inner/outer membrane transporter K18138 acrB; multidrug efflux pump
D Rta_15750 Candidate periplasmic linker protein K18302 mexJ; membrane fusion protein, multidrug efflux system
D Rta_15760 Candidate inner membrane transporter K18303 mexK; multidrug efflux pump
D Rta_28880 transcriptional regulator, MerR family-like protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Rta_11010 outer membrane protein-like protein K12340 tolC; outer membrane protein
D Rta_14340 transcriptional regulator, LysR family-like protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D Rta_09780 transcriptional regulator, LysR family-like protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D Rta_35110 Candidate periplasmic linker protein K18901 bpeE; membrane fusion protein, multidrug efflux system
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:rta00537]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:rta03100]
D Rta_10716 trnA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rta_12687 trnA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rta_05447 trnA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rta_33176 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rta_22266 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rta_33986 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rta_02919 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rta_22776 trnN; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Rta_10718 trnD; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Rta_15807 trnC; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Rta_33276 trnQ; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Rta_10717 trnE; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Rta_14986 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rta_35767 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rta_15806 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rta_24446 trnH; tRNA-His K14226 tRNA-His; tRNA His
D Rta_05446 trnI; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Rta_26436 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rta_15808 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rta_31496 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rta_17376 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rta_15766 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rta_12686 trnK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Rta_21036 trnK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Rta_33177 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D Rta_36036 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D Rta_34376 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D Rta_35627 trnF; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Rta_22276 trnP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rta_17846 trnP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rta_29136 trnP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rta_32906 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rta_15456 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rta_30266 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rta_19476 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rta_08466 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Rta_10376 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Rta_35766 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Rta_35756 trnW; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Rta_35768 trnY; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Rta_17356 trnV; tRNA-Val K14237 tRNA-Val; tRNA Val
D Rta_24456 trnV; tRNA-Val K14237 tRNA-Val; tRNA Val
D Rta_18556 trnV; tRNA-Val K14237 tRNA-Val; tRNA Val
D Rta_05445 rrsA; putative protein encoded by Rta_05445 K01977 16SrRNA; 16S ribosomal RNA
D Rta_05448 rrlA; putative protein encoded by Rta_05448 K01980 23SrRNA; 23S ribosomal RNA
D Rta_05449 rrfA; putative protein encoded by Rta_05449 K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D Rta_27270 hisD; Candidate histidinol dehydrogenase K15509 hpsN; sulfopropanediol 3-dehydrogenase [EC:1.1.1.308]
D Rta_12020 dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein K16216 yueD; benzil reductase ((S)-benzoin forming) [EC:1.1.1.320]
D Rta_38010 UDP-galactose 4-epimerase K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410]
D Rta_29520 pdhA; candidate pyruvate dehydrogenase E1 component, alpha subunit K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-]
D Rta_29510 pdhB; candidate pyruvate dehydrogenase E1 component, beta subunit K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-]
D Rta_14760 conserved hypothetical protein K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D Rta_18720 glucose/sorbosone dehydrogenases-like protein K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D Rta_00990 Conserved hypothetical protein K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D Rta_13370 candidate carbon monoxide dehydrogenase small chain K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D Rta_13390 candidate carbon monoxide dehydrogenase medium chain K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3]
D Rta_01170 Candidate Carbon monoxide dehydrogenase large chain K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3]
D Rta_13380 candidate carbon monoxide dehydrogenase large chain K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3]
D Rta_32440 indolepyruvate ferredoxin oxidoreductase alpha subunit-like protein K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D Rta_13910 conserved hypothetical protein K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D Rta_13920 conserved hypothetical protein K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D Rta_32450 indolepyruvate ferredoxin oxidoreductase beta subunit-like protein K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D Rta_36990 candidate indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
D Rta_19990 NADP-dependent oxidoreductases-like protein K23256 curA; NADPH-dependent curcumin reductase [EC:1.3.1.-]
D Rta_11280 candidate isoquinoline 1-oxidoreductase, alpha subunit K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D Rta_11290 isoquinoline 1-oxidoreductase, beta subunit-like protein K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D Rta_14720 candidate electron transfer flavoprotein-ubiquinone oxidoreductase (Electron-transferring-flavoprotein dehydrogenase) K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D Rta_15050 conserved hypothetical protein K18208 RNLS; renalase [EC:1.6.3.5]
D Rta_24440 Zeta-crystallin K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D Rta_31840 qor; candidate quinone oxidoreductase (NADPH:quinone reductase) K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D Rta_05970 NADPH:quinone reductase (Quinone oxidoreductase)-like protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D Rta_24200 ahpF; Candidate alkyl hydroperoxide reductase F component K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D Rta_11060 msrA; Candidate peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D Rta_20180 msrB; Candidate peptide methionine sulfoxide reductase (protein-methionine-S-oxide reductase) K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D Rta_22100 glutathione S-transferase (Glutathione transferase)-like protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D Rta_02430 Glutathione S-transferase (Glutathione transferase)-like protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D Rta_07910 Conserved hypothetical protein K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D Rta_24070 bcp; Candidate thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Rta_20520 Candidate peroxiredoxine K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Rta_24190 ahpC; Candidate alkyl hydroperoxide reductase C component K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D Rta_34670 ohr; Candidate organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D Rta_15070 conserved hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D Rta_00520 Conserved hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D Rta_12710 conserved hypothetical protein K21615 E1.14.11.57; L-proline 4-hydroxylase [EC:1.14.11.57]
D Rta_24230 Conserved hypothetical protein K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-]
D Rta_22160 Conserved hypothetical protein K22348 moxA; manganese oxidase [EC:1.16.3.3]
D Rta_15720 conserved hypothetical protein K21677 hpnE; hydroxysqualene dehydroxylase [EC:1.17.8.1]
D Rta_13930 fpr; candidate ferredoxin--NADP reductase (Flavodoxin reductase) K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D Rta_30250 Candidate phosphonate dehydrogenase (NAD-dependent phosphite dehydrogenase) K18916 ptxD; phosphonate dehydrogenase [EC:1.20.1.1]
D Rta_23570 arsenate reductase (Arsenical pump modifier)-like protein K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D Rta_24420 pcm; Candidate protein-L-isoaspartate O-methyltransferase (Protein-beta-aspartate methyltransferase) K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D Rta_02140 Protein-L-isoaspartate O-methyltransferase-like protein K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D Rta_11030 Protein L-isoaspartyl methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D Rta_35030 cyclopropane-fatty-acyl-phospholipid synthase (Cyclopropane fatty acid synthase)-like protein K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D Rta_25540 cyclopropane-fatty-acyl-phospholipid synthase (Cyclopropane fatty acid synthase)-like protein K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D Rta_04830 Cyclopropane-fatty-acyl-phospholipid synthase-like protein K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D Rta_37190 cyclopropane-fatty-acyl-phospholipid synthase (Cyclopropane fatty acid synthase)-like protein K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D Rta_04890 Candidate 3-oxoacyl-[acyl-carrier-protein] synthase (Beta-ketoacyl-ACP synthase) K16872 E2.3.1.207; beta-ketodecanoyl-[acyl-carrier-protein] synthase [EC:2.3.1.207]
D Rta_05540 lnt; Candidate apolipoprotein N-acyltransferase (ALP N-acyltransferase), membrane protein K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D Rta_36030 acetyltransferase-like protein K03829 yedL; putative acetyltransferase [EC:2.3.1.-]
D Rta_26030 phosphinothricin N-acetyltransferase (Phosphinothricin-resistance protein)-like protein K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-]
D Rta_22870 aat; Phenyalanyltransferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D Rta_25240 candidate membrane protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D Rta_22880 Candidate arginyl-tRNA--protein transferase (Arginyltransferase) K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D Rta_16160 lgt; candidate prolipoprotein diacylglyceryl transferase, membrane protein K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D Rta_38000 conserved hypothetical protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217]
D Rta_24180 conserved hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D Rta_37080 glutamate-ammonia-ligase adenylyltransferase (Glutamine-synthetase adenylyltransferase)-like protein K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D Rta_06070 Conserved hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D Rta_05660 aceK; Candidate [Isocitrate dehydrogenase (NADP(+))] kinase (Isocitrate dehydrogenase kinase/phosphatase) K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D Rta_02250 candidate serine kinase of the HPr protein K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D Rta_14270 formyl-coenzyme A transferase (Formyl-CoA transferase)-like protein K18313 sct; succinyl-CoA---D-citramalate CoA-transferase [EC:2.8.3.20]
D Rta_14750 conserved hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Rta_24630 Conserved hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Rta_15170 conserved hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Rta_12960 conserved hypothetical protein K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D Rta_10310 Conserved hypothetical protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D Rta_23610 phosphohistidine phosphatase sixA-like protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D Rta_31970 deoxyribonuclease protein-like protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Rta_19810 deoxyribonuclease-like protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Rta_33100 candidate lysozyme, Glycoside Hydrolase Family 24 K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D Rta_13990 nitrilase-like protein K01459 E3.5.1.77; N-carbamoyl-D-amino-acid hydrolase [EC:3.5.1.77]
D Rta_27230 N-acyl-D-glutamate deacylase (N-acyl-D-glutamate amidohydrolase) and to D-aminoacylase (N-acyl-D-amino-acid deacylase)-like protein K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
D Rta_12410 candidate D-aminoacylase (N-acyl-D-amino-acid deacylase) K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
D Rta_14020 candidate N-acyl-D-aspartate deacylase (N-acyl-D-aspartate amidohydrolase) K20817 E3.5.1.83; N-acyl-D-aspartate deacylase [EC:3.5.1.83]
D Rta_36910 def; Candidate peptide deformylase (Polypeptide deformylase) K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Rta_20400 def; candidate peptide deformylase (Polypeptide deformylase) K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Rta_37060 conserved hypothetical protein K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D Rta_14390 GlcNAc deacetylase, Carbohydrate Esterase Family 4-like protein K01567 pdaA; peptidoglycan-N-acetylmuramic acid deacetylase [EC:3.5.1.-]
D Rta_28580 yceF; candidate Maf, Nucleotide binding protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D Rta_25220 MoxR protein-like protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Rta_31990 ATPases-like protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Rta_32180 MoxR ATPases-like protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Rta_00770 Conserved hypothetical protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D Rta_37990 L-fuculose phosphate aldolase (L-fuculose-1-phosphate aldolase)-like protein K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104]
D Rta_08980 garD; Candidate D-galactarate dehydratase K26399 K26399; arabinonate dehydratase [EC:4.2.1.5]
D Rta_33430 candidate bifunctional protein : D-galactarate dehydratase; Altronate hydrolase (Altronic acid hydratase) K26399 K26399; arabinonate dehydratase [EC:4.2.1.5]
D Rta_06390 Conserved hypothetical protein K22209 tarD; D(-)-tartrate dehydratase [EC:4.2.1.81]
D Rta_07760 Conserved hypothetical protein K17758 nnrD; ADP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.136]
D Rta_17400 conserved hypothetical protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D Rta_21220 threonine dehydratase catabolic (Threonine deaminase)-like protein K22589 thadh; threo-3-hydroxy-L-aspartate ammonia-lyase [EC:4.3.1.16]
D Rta_37980 hyi; candidate hydroxypyruvate isomerase K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35]
D Rta_10110 candidate methylmalonyl-CoA mutase K11942 icmF; isobutyryl-CoA mutase [EC:5.4.99.13]
D Rta_25010 long-chain-fatty-acid--CoA ligase-like protein K12508 fcs; feruloyl-CoA synthase [EC:6.2.1.34]
D Rta_09950 mpl; candidate UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (Murein peptide ligase) K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D Rta_18315 conserved hypothetical protein K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D Rta_30460 formate dehydrogenase subunit D-like protein K02379 fdhD; FdhD protein
D Rta_22650 Candidate ferredoxin K05524 fdxA; ferredoxin
D Rta_18370 iscU; Candidate Fe-S cluster assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D Rta_35510 Candidate citrate utilization protein B K13795 citB; citrate/tricarballylate utilization protein
D Rta_35500 fumarate reductase flavoprotein subunit precursor (Iron(III)-induced flavocytochrome C3)-like protein K13796 cobZ; tricarballylate dehydrogenase
D Rta_25190 Candidate electron transfer flavoprotein beta-subunit (Electron transfer flavoprotein small subunit) K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
D Rta_19970 acyl-CoA dehydrogenases-like protein K09456 aidB; putative acyl-CoA dehydrogenase
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D Rta_31320 lyases-like protein K08234 yaeR; glyoxylase I family protein
D Rta_04720 Conserved hypothetical protein K06997 yggS; PLP dependent protein
D Rta_33970 candidate acetyltransferase K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D Rta_13620 conserved hypothetical protein K08992 lapA; lipopolysaccharide assembly protein A
D Rta_13610 conserved hypothetical protein K19804 lapB; lipopolysaccharide assembly protein B
D Rta_00410 candidate membrane protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
D Rta_28650 HemY protein-like protein K02498 hemY; HemY protein
D Rta_31200 ubiB; candidate 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway K03688 ubiB; ubiquinone biosynthesis protein
D Rta_31210 conserved hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D Rta_24000 mobB; Candidate molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
D Rta_05110 esterase, Carbohydrate Esterase Family 1-like protein K03932 lpqC; polyhydroxybutyrate depolymerase
D Rta_22410 Candidate chromate reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
D Rta_00700 Conserved hypothetical protein K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D Rta_15080 candidate membrane protein K15977 K15977; putative oxidoreductase
D Rta_27600 carboxylesterase-like protein K06999 K06999; phospholipase/carboxylesterase
D Rta_30370 esterase-like protein K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D Rta_21840 cspD; Candidate cold shock-like protein K03704 cspA; cold shock protein
D Rta_01440 glnK; Candidate Nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2
D Rta_19930 candidate transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
D Rta_31100 conserved hypothetical protein K07577 K07577; putative mRNA 3-end processing factor
C 99975 Protein processing
D Rta_21830 clpS; Candidate ATP-dependent Clp protease adaptor protein clpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D Rta_15770 tig; candidate trigger factor K03545 tig; trigger factor
D Rta_07920 candidate membrane protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D Rta_32880 ureE; candidate urease accessory protein K03187 ureE; urease accessory protein
D Rta_32890 ureF; candidate urease accessory protein K03188 ureF; urease accessory protein
D Rta_32900 ureG; candidate urease accessory protein K03189 ureG; urease accessory protein
D Rta_32720 urease accessory protein-like protein K03190 ureD; urease accessory protein
D Rta_19660 smpB; candidate small protein B (SsrA-binding protein) K03664 smpB; SsrA-binding protein
D Rta_01420 Conserved hypothetical protein K07391 comM; magnesium chelatase family protein
D Rta_26870 proteasome alpha subunit (Multicatalytic endopeptidase complex alpha subunit)-like protein K07395 K07395; putative proteasome-type protease
D Rta_35290 Conserved hypothetical protein K07397 yhfA; putative redox protein
D Rta_07890 cytochrome c biogenesis protein, membrane protein-like protein K07399 resB; cytochrome c biogenesis protein
D Rta_32600 xanthine and CO dehydrogenases maturation factor-like protein K07402 xdhC; xanthine dehydrogenase accessory factor
D Rta_13440 conserved hypothetical protein K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D Rta_30330 radC; Candidate DNA repair protein K03630 radC; DNA repair protein RadC
D Rta_24590 rmuC; Candidate DNA recombination protein rmuC K09760 rmuC; DNA recombination protein RmuC
D Rta_04970 Conserved hypothetical protein K07460 yraN; putative endonuclease
D Rta_36930 smf; Smf protein K04096 smf; DNA processing protein
D Rta_31620 ATPase protein, AAA family-like protein K07478 ycaJ; putative ATPase
D Rta_24390 3-5 exonuclease protein-like protein K07501 K07501; 3'-5' exonuclease
D Rta_25600 transposase-like protein K07486 K07486; transposase
D Rta_08090 Conserved hypothetical protein K07491 rayT; REP-associated tyrosine transposase
C 99979 Viral proteins
C 99998 Others
D Rta_23290 Conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D Rta_37210 melB; Candidate Na+/melibiose symporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D Rta_07820 Candidate amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D Rta_12060 pitA; Candidate phosphate/sulphate permease K03306 TC.PIT; inorganic phosphate transporter, PiT family
D Rta_31190 putP; Candidate Na+/proline symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
C 99978 Cell growth
D Rta_20190 intracellular septation protein-like protein K06190 ispZ; intracellular septation protein
D Rta_24950 stage V sporulation protein R-like protein K06415 spoVR; stage V sporulation protein R
C 99993 Cell motility
C 99995 Signaling proteins
D Rta_37670 ProP effector-like protein K03607 proQ; ProP effector
D Rta_19620 typA; Candidate GTP-binding elongation factor K06207 typA; GTP-binding protein
D Rta_26810 Candidate membrane protein K07168 K07168; CBS domain-containing membrane protein
D Rta_07110 phosphate starvation-inducible protein PhoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D Rta_24080 Conserved hypothetical protein K07175 phoH2; PhoH-like ATPase
D Rta_24970 serine protein kinase-like protein K07180 prkA; serine protein kinase
D Rta_35460 Conserved hypothetical protein K08482 kaiC; circadian clock protein KaiC
D Rta_04330 ATPase protein, RecA-superfamily-like protein K08482 kaiC; circadian clock protein KaiC
D Rta_10570 conserved hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D Rta_31640 lolA; Candidate Outer-membrane lipoproteins carrier protein precursor K03634 lolA; outer membrane lipoprotein carrier protein
D Rta_33260 lolB; Candidate Outer-membrane lipoprotein lolB precursor K02494 lolB; outer membrane lipoprotein LolB
D Rta_08150 lipoprotein precursor-like protein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D Rta_17520 skp; Candidate Outer membrane protein periplasmic chaperone OmpH K06142 hlpA; outer membrane protein
D Rta_24410 Conserved hypothetical protein K06194 nlpD; lipoprotein NlpD
D Rta_30820 conserved hypothetical protein K07290 yhjG; AsmA family protein
D Rta_25970 osmB; Candidate osmotically inducible lipoprotein B precursor K04062 osmB; osmotically inducible lipoprotein OsmB
D Rta_18930 conserved hypothetical protein K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D Rta_23490 phoU; Candidate phosphate transport system protein PhoU K02039 phoU; phosphate transport system protein
D Rta_34430 mdoG; candidate glucans biosynthesis protein G K03670 mdoG; periplasmic glucans biosynthesis protein
D Rta_33610 periplasmic divalent cation tolerance protein-like protein K03926 cutA; periplasmic divalent cation tolerance protein
D Rta_22440 candidate ATP-binding component of an ABC transport system K05781 phnK; putative phosphonate transport system ATP-binding protein
D Rta_35920 apaG; Candidate ApaG protein K06195 apaG; ApaG protein
D Rta_07940 cyaY; Candidate iron binding protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D Rta_13220 transcriptional regulator, LysR family-like protein K07219 K07219; putative molybdopterin biosynthesis protein
D Rta_24270 iron-regulated protein-like protein K07231 K07231; putative iron-regulated protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D Rta_26990 Candidate membrane protein GlpM K02442 glpM; membrane protein GlpM
D Rta_10680 candidate membrane protein distantly related to colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D Rta_16210 conserved hypothetical protein K04065 osmY; hyperosmotically inducible periplasmic protein
D Rta_30890 Conserved hypothetical protein K04065 osmY; hyperosmotically inducible periplasmic protein
D Rta_30360 Conserved hypothetical protein K06886 glbN; hemoglobin
D Rta_28930 globin-like protein K06886 glbN; hemoglobin
D Rta_35770 Conserved hypothetical protein K07001 K07001; NTE family protein
D Rta_02200 Esterase of the alpha-beta hydrolase superfamily-like protein K07001 K07001; NTE family protein
D Rta_07050 Candidate Fe-S protein K15724 erpA; iron-sulfur cluster insertion protein
D Rta_02010 Candidate Membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein
D Rta_16780 candidate membrane protein K07058 K07058; membrane protein
D Rta_14520 candidate membrane protein K07058 K07058; membrane protein
D Rta_01410 candidate membrane protein K07058 K07058; membrane protein
D Rta_02050 rbn; Candidate tRNA processing ribonuclease BN K07058 K07058; membrane protein
D Rta_20440 hypothetical protein K07100 K07100; putative phosphoribosyl transferase
D Rta_20450 conserved hypothetical protein K07100 K07100; putative phosphoribosyl transferase
D Rta_15120 conserved hypothetical protein K07146 K07146; UPF0176 protein
D Rta_27410 PhnB protein-like protein K04750 phnB; PhnB protein
D Rta_24350 glcG; Candidate protein glcG K11477 glcG; glc operon protein GlcG
D Rta_06230 candidate membrane protein K02351 K02351; putative membrane protein
D Rta_35670 Conserved hypothetical protein K03744 lemA; LemA protein
D Rta_03750 recA; Candidate recombinase A K03744 lemA; LemA protein
D Rta_30350 Conserved hypothetical protein K03744 lemA; LemA protein
D Rta_36940 Conserved hypothetical protein K03747 smg; Smg protein
D Rta_10670 Conserved hypothetical protein K03749 dedD; DedD protein
D Rta_26000 dedA; Candidate DedA protein (DSG-1 protein), membrane protein K03975 dedA; membrane-associated protein
D Rta_37290 candidate membrane protein K08972 K08972; putative membrane protein
D Rta_02770 candidate membrane protein K08983 K08983; putative membrane protein
D Rta_12920 conserved hypothetical protein K08995 K08995; putative membrane protein
D Rta_12940 conserved hypothetical protein K08995 K08995; putative membrane protein
D Rta_05745 Conserved hypothetical protein K09858 K09858; SEC-C motif domain protein
C 99997 Function unknown
D Rta_05840 Conserved hypothetical protein K06867 K06867; uncharacterized protein
D Rta_19800 candidate ankyrin repeat harboring protein K06867 K06867; uncharacterized protein
D Rta_04690 Conserved hypothetical protein K06867 K06867; uncharacterized protein
D Rta_03740 candidate membrane protein K06872 K06872; uncharacterized protein
D Rta_05280 Conserved hypothetical protein K06884 K06884; uncharacterized protein
D Rta_10220 conserved hypothetical protein K06884 K06884; uncharacterized protein
D Rta_35870 Conserved hypothetical protein K06884 K06884; uncharacterized protein
D Rta_20910 conserved hypothetical protein K06884 K06884; uncharacterized protein
D Rta_26020 Conserved hypothetical protein K06889 K06889; uncharacterized protein
D Rta_12970 conserved hypothetical protein K06889 K06889; uncharacterized protein
D Rta_09130 Hypothetical protein K06889 K06889; uncharacterized protein
D Rta_10170 conserved hypothetical protein K06923 K06923; uncharacterized protein
D Rta_37280 conserved hypothetical protein K06938 K06938; uncharacterized protein
D Rta_00695 Conserved hypothetical protein K06940 K06940; uncharacterized protein
D Rta_27900 Conserved hypothetical protein K06940 K06940; uncharacterized protein
D Rta_34490 hypothetical protein K06950 K06950; uncharacterized protein
D Rta_08960 Conserved hypothetical protein K06953 K06953; uncharacterized protein
D Rta_37170 NAD/FAD-binding protein-like protein K06954 K06954; uncharacterized protein
D Rta_09250 Conserved hypothetical protein K06975 K06975; uncharacterized protein
D Rta_06010 Conserved hypothetical protein K06975 K06975; uncharacterized protein
D Rta_36470 conserved hypothetical protein K06991 K06991; uncharacterized protein
D Rta_09900 conserved hypothetical protein K07000 K07000; uncharacterized protein
D Rta_03190 Conserved hypothetical protein K07018 K07018; uncharacterized protein
D Rta_03780 Conserved hypothetical protein K07019 K07019; uncharacterized protein
D Rta_09230 Conserved hypothetical protein K07032 K07032; uncharacterized protein
D Rta_02860 Conserved hypothetical protein K07039 K07039; uncharacterized protein
D Rta_23080 Conserved hypothetical protein K07044 K07044; uncharacterized protein
D Rta_04100 Conserved hypothetical protein K07044 K07044; uncharacterized protein
D Rta_24990 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase-like protein K07045 K07045; uncharacterized protein
D Rta_10330 conserved hypothetical protein K07054 K07054; uncharacterized protein
D Rta_19720 conserved hypothetical protein K07063 K07063; uncharacterized protein
D Rta_00720 Hypothetical protein K07064 K07064; uncharacterized protein
D Rta_00170 conserved hypothetical protein K07075 K07075; uncharacterized protein
D Rta_06890 Conserved hypothetical protein K07075 K07075; uncharacterized protein
D Rta_33920 Candidate periplasmic component K07080 K07080; uncharacterized protein
D Rta_20840 Candidate integral membrane protein K07086 K07086; uncharacterized protein
D Rta_33840 candidate membrane protein K07090 K07090; uncharacterized protein
D Rta_11310 candidate membrane protein K07090 K07090; uncharacterized protein
D Rta_02940 candidate membrane protein K07090 K07090; uncharacterized protein
D Rta_16320 candidate permease K07090 K07090; uncharacterized protein
D Rta_14460 conserved hypothetical protein K07093 K07093; uncharacterized protein
D Rta_01350 Hypothetical protein K07093 K07093; uncharacterized protein
D Rta_37000 Conserved hypothetical protein K07093 K07093; uncharacterized protein
D Rta_37610 conserved hypothetical protein K07093 K07093; uncharacterized protein
D Rta_09340 Conserved hypothetical protein K07095 K07095; uncharacterized protein
D Rta_02090 Candidate phosphohydrolase K07098 K07098; uncharacterized protein
D Rta_19060 xanthine phosphoribosyltransferase-like protein K07101 K07101; uncharacterized protein
D Rta_13860 Candidate membrane protein K07112 K07112; uncharacterized protein
D Rta_37520 proteins containing SET domain-like protein K07117 K07117; uncharacterized protein
D Rta_36580 candidate membrane protein K07120 K07120; uncharacterized protein
D Rta_00290 Conserved hypothetical protein K07124 K07124; uncharacterized protein
D Rta_00300 dehydrogenase/reductase oxidoreductase protein-like protein K07124 K07124; uncharacterized protein
D Rta_32810 conserved hypothetical protein K07133 K07133; uncharacterized protein
D Rta_09460 Conserved hypothetical protein K07137 K07137; uncharacterized protein
D Rta_34290 conserved hypothetical protein K07140 K07140; MOSC domain-containing protein
D Rta_28260 conserved hypothetical protein K07157 K07157; uncharacterized protein
D Rta_13410 conserved hypothetical protein K07161 K07161; uncharacterized protein
D Rta_38220 conserved hypothetical protein K08998 K08998; uncharacterized protein
D Rta_21870 Conserved hypothetical protein K09005 K09005; uncharacterized protein
D Rta_26685 Conserved hypothetical protein K09117 K09117; uncharacterized protein
D Rta_03520 Conserved hypothetical protein K09158 K09158; uncharacterized protein
D Rta_13420 conserved hypothetical protein K09386 K09386; uncharacterized protein
D Rta_37180 conserved hypothetical protein K09701 K09701; uncharacterized protein
D Rta_04420 Conserved hypothetical protein K09779 K09779; uncharacterized protein
D Rta_25560 Conserved hypothetical protein K09780 K09780; uncharacterized protein
D Rta_27680 candidate membrane protein K09781 K09781; uncharacterized protein
D Rta_24960 Conserved hypothetical protein K09786 K09786; uncharacterized protein
D Rta_21930 Conserved hypothetical protein K09791 K09791; uncharacterized protein
D Rta_36320 candidate membrane protein K09793 K09793; uncharacterized protein
D Rta_19680 conserved hypothetical protein K09801 K09801; uncharacterized protein
D Rta_28980 conserved hypothetical protein K09861 K09861; uncharacterized protein
D Rta_29190 conserved hypothetical protein K09862 K09862; uncharacterized protein
D Rta_23040 Conserved hypothetical protein K09919 K09919; uncharacterized protein
D Rta_09510 Conserved hypothetical protein K09921 K09921; uncharacterized protein
D Rta_04290 candidate membrane protein K09922 K09922; uncharacterized protein
D Rta_19030 Conserved hypothetical protein K09937 K09937; uncharacterized protein
D Rta_08060 Hypothetical protein K09941 K09941; uncharacterized protein
D Rta_24300 Conserved hypothetical protein K09947 K09947; uncharacterized protein
D Rta_11100 hypothetical protein K09950 K09950; uncharacterized protein
D Rta_16850 conserved hypothetical protein K09954 K09954; uncharacterized protein
D Rta_06320 Conserved hypothetical protein K09962 K09962; uncharacterized protein
D Rta_22010 Conserved hypothetical protein K09983 K09983; uncharacterized protein
D Rta_33980 conserved hypothetical protein K09989 K09989; uncharacterized protein
D Rta_12050 conserved hypothetical protein K07220 K07220; uncharacterized protein
D Rta_24290 Conserved hypothetical protein K07338 K07338; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 21, 2024