+D GENES KO #

  KEGG Orthology (KO) - Rhodanobacter thiooxydans

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:rth00010] D LRK53_00815 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D LRK53_03675 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D LRK53_18080 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D LRK53_01790 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D LRK53_00140 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D LRK53_17125 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D LRK53_11495 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D LRK53_17145 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D LRK53_00195 type II glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D LRK53_04285 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D LRK53_02545 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D LRK53_10995 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D LRK53_10955 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D LRK53_12305 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D LRK53_17135 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D LRK53_12075 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D LRK53_04075 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D LRK53_04185 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D LRK53_04190 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_09150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_02700 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D LRK53_05455 NAD(P)-dependent alcohol dehydrogenase K12957 ahr; alcohol/geraniol dehydrogenase (NADP+) [EC:1.1.1.2 1.1.1.183] D LRK53_11895 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D LRK53_15540 cytochrome c K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5] D LRK53_06200 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D LRK53_00080 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D LRK53_02985 aldose epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D LRK53_18085 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D LRK53_17895 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D LRK53_04585 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] C 00020 Citrate cycle (TCA cycle) [PATH:rth00020] D LRK53_16720 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D LRK53_09345 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3] D LRK53_17225 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D LRK53_02675 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D LRK53_13565 isocitrate dehydrogenase K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] D LRK53_09160 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D LRK53_09155 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D LRK53_04190 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_09150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_05030 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D LRK53_05025 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D LRK53_12375 acetyl-CoA hydrolase/transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D LRK53_12620 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D LRK53_12615 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D LRK53_17240 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D LRK53_12630 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D LRK53_17235 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D LRK53_12625 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D LRK53_17230 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D LRK53_15950 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D LRK53_09230 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D LRK53_09435 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D LRK53_04585 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D LRK53_04075 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D LRK53_04185 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:rth00030] D LRK53_18080 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D LRK53_00675 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D LRK53_00670 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D LRK53_00585 gnd; decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D LRK53_17105 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D LRK53_17110 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D LRK53_18090 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D LRK53_18075 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D LRK53_16900 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D LRK53_11590 phosphoketolase family protein K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22] D LRK53_14685 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D LRK53_02295 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D LRK53_14675 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D LRK53_18085 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D LRK53_17895 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D LRK53_06245 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D LRK53_11080 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D LRK53_00665 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D LRK53_00660 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D LRK53_00340 GMC family oxidoreductase K19813 gdh; glucose dehydrogenase [EC:1.1.5.9] D LRK53_15535 GMC family oxidoreductase K06151 E1.1.99.3A; gluconate 2-dehydrogenase alpha chain [EC:1.1.99.3] D LRK53_15530 gluconate 2-dehydrogenase subunit 3 family protein K06152 E1.1.99.3G; gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3] D LRK53_17125 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D LRK53_00140 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D LRK53_01790 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:rth00040] D LRK53_12035 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D LRK53_11295 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D LRK53_17105 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D LRK53_04880 SDR family oxidoreductase K22185 xylB; D-xylose 1-dehydrogenase [EC:1.1.1.175] C 00051 Fructose and mannose metabolism [PATH:rth00051] D LRK53_04950 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D LRK53_04345 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D LRK53_17895 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D LRK53_01790 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D LRK53_00140 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D LRK53_17125 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D LRK53_11495 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D LRK53_15725 PTS fructose IIA subunit family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] C 00052 Galactose metabolism [PATH:rth00052] D LRK53_02985 aldose epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D LRK53_11605 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D LRK53_11295 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D LRK53_18085 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D LRK53_17895 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D LRK53_00815 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D LRK53_03675 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D LRK53_04900 beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23] D LRK53_01790 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D LRK53_04885 dgoD; galactonate dehydratase K01684 dgoD; galactonate dehydratase [EC:4.2.1.6] D LRK53_04895 2-dehydro-3-deoxygalactonokinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58] D LRK53_04890 2-dehydro-3-deoxy-6-phosphogalactonate aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21] D LRK53_15480 alpha-glucosidase family protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D LRK53_15505 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D LRK53_15500 DUF5110 domain-containing protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism [PATH:rth00053] D LRK53_12035 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D LRK53_06725 NAD-dependent epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D LRK53_11630 NAD-dependent epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D LRK53_04875 SMP-30/gluconolactonase/LRE family protein K13874 araB; L-arabinonolactonase [EC:3.1.1.15] C 00500 Starch and sucrose metabolism [PATH:rth00500] D LRK53_15480 alpha-glucosidase family protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D LRK53_15505 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D LRK53_15500 DUF5110 domain-containing protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D LRK53_11295 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D LRK53_00850 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D LRK53_09625 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D LRK53_02460 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D LRK53_15495 alpha-amylase K01176 AMY; alpha-amylase [EC:3.2.1.1] D LRK53_05010 pgmB; beta-phosphoglucomutase K01838 pgmB; beta-phosphoglucomutase [EC:5.4.2.6] D LRK53_17530 alpha,alpha-trehalase K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28] D LRK53_18085 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D LRK53_17895 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D LRK53_00815 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D LRK53_03675 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D LRK53_18080 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D LRK53_04950 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rth00520] D LRK53_11930 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D LRK53_00825 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D LRK53_00690 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D LRK53_04950 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D LRK53_00685 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D LRK53_04320 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D LRK53_11600 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D LRK53_11515 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D LRK53_02210 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D LRK53_17865 anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D LRK53_07485 gph; phosphoglycolate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105] D LRK53_06865 phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D LRK53_06860 nucleotidyltransferase family protein K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D LRK53_15670 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D LRK53_12790 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D LRK53_15295 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D LRK53_11625 tviB; Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D LRK53_16565 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D LRK53_04420 polysaccharide biosynthesis protein K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D LRK53_02875 SDR family oxidoreductase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35] D LRK53_15510 glycosyl hydrolase family 39 K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37] D LRK53_00815 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D LRK53_03675 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D LRK53_18085 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D LRK53_17895 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D LRK53_11295 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D LRK53_12035 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D LRK53_11605 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D LRK53_06725 NAD-dependent epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D LRK53_11630 NAD-dependent epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D LRK53_15725 PTS fructose IIA subunit family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D LRK53_18080 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D LRK53_04345 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D LRK53_07000 DegT/DnrJ/EryC1/StrS family aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102] D LRK53_01510 2Fe-2S iron-sulfur cluster-binding protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] C 00620 Pyruvate metabolism [PATH:rth00620] D LRK53_00080 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D LRK53_04075 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D LRK53_04185 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D LRK53_04190 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_09150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_10285 acetaldehyde dehydrogenase (acetylating) K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] D LRK53_02700 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D LRK53_05455 NAD(P)-dependent alcohol dehydrogenase K12957 ahr; alcohol/geraniol dehydrogenase (NADP+) [EC:1.1.1.2 1.1.1.183] D LRK53_11895 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D LRK53_15540 cytochrome c K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5] D LRK53_11585 acetate/propionate family kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D LRK53_11580 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D LRK53_17135 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D LRK53_06620 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D LRK53_01615 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D LRK53_01605 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D LRK53_08360 accD; acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D LRK53_06175 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D LRK53_06200 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D LRK53_12375 acetyl-CoA hydrolase/transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D LRK53_01820 VOC family protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D LRK53_12105 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D LRK53_04070 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D LRK53_09435 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D LRK53_15950 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D LRK53_09230 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D LRK53_16490 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D LRK53_04585 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D LRK53_12075 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D LRK53_03380 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D LRK53_10540 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_10715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13375 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_17995 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_03120 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rth00630] D LRK53_03375 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D LRK53_00080 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D LRK53_03380 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D LRK53_09435 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D LRK53_16720 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D LRK53_09345 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3] D LRK53_17225 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D LRK53_10540 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_10715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13375 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_17995 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_12685 phbB; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D LRK53_13780 phbB; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D LRK53_16360 VOC family protein K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D LRK53_13690 catalase K03781 katE; catalase [EC:1.11.1.6] D LRK53_04280 HAD hydrolase-like protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D LRK53_00320 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D LRK53_05390 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D LRK53_09610 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D LRK53_04495 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D LRK53_04190 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_09150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_04500 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein D LRK53_05645 kinase K15918 GLYK; D-glycerate 3-kinase [EC:2.7.1.31] D LRK53_00660 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D LRK53_07355 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00640 Propanoate metabolism [PATH:rth00640] D LRK53_00080 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D LRK53_09440 prpE; propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D LRK53_11585 acetate/propionate family kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D LRK53_11580 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D LRK53_17285 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D LRK53_17290 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D LRK53_07995 thiamine pyrophosphate-dependent enzyme K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D LRK53_17295 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D LRK53_04190 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_09150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_09140 YhdH/YhfP family quinone oxidoreductase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D LRK53_12020 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_13665 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_06620 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D LRK53_01615 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D LRK53_01605 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D LRK53_08360 accD; acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D LRK53_06930 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D LRK53_16360 VOC family protein K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D LRK53_05025 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D LRK53_05030 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D LRK53_09465 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D LRK53_09475 bifunctional 2-methylcitrate dehydratase/aconitate hydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79] D LRK53_09460 prpB; methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] C 00650 Butanoate metabolism [PATH:rth00650] D LRK53_10540 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_10715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13375 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_17995 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_10545 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D LRK53_10710 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D LRK53_11210 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D LRK53_12020 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_13665 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_13455 enoyl-CoA hydratase-related protein K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D LRK53_11910 trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D LRK53_10285 acetaldehyde dehydrogenase (acetylating) K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] D LRK53_09100 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D LRK53_09095 pha synthase subunit protein K22881 phaE; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaE D LRK53_05270 phaZ; polyhydroxyalkanoate depolymerase K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75] D LRK53_12685 phbB; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D LRK53_13780 phbB; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D LRK53_12620 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D LRK53_12615 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D LRK53_17240 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D LRK53_12630 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D LRK53_17235 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D LRK53_12625 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D LRK53_17230 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D LRK53_06930 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D LRK53_12375 acetyl-CoA hydrolase/transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D LRK53_07680 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D LRK53_16420 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D LRK53_05845 3-oxoacid CoA-transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D LRK53_17935 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D LRK53_09410 D-(-)-3-hydroxybutyrate oligomer hydrolase K07518 E3.1.1.22; hydroxybutyrate-dimer hydrolase [EC:3.1.1.22] D LRK53_03085 ilvB; biosynthetic-type acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D LRK53_11830 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D LRK53_03080 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:rth00660] D LRK53_03085 ilvB; biosynthetic-type acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D LRK53_11830 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D LRK53_03080 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D LRK53_05025 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D LRK53_05030 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D LRK53_03110 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D LRK53_16375 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D LRK53_03105 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D LRK53_16370 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D LRK53_03100 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:rth00562] D LRK53_15635 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D LRK53_11495 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:rth00190] D LRK53_08935 NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D LRK53_08940 NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D LRK53_08945 NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D LRK53_08950 NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D LRK53_08955 nuoE; NADH-quinone oxidoreductase subunit NuoE K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D LRK53_08960 nuoF; NADH-quinone oxidoreductase subunit NuoF K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D LRK53_08965 nuoG; NADH-quinone oxidoreductase subunit NuoG K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D LRK53_08970 nuoH; NADH-quinone oxidoreductase subunit NuoH K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D LRK53_08975 nuoI; NADH-quinone oxidoreductase subunit NuoI K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D LRK53_08980 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D LRK53_08985 nuoK; NADH-quinone oxidoreductase subunit NuoK K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D LRK53_08990 nuoL; NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D LRK53_08995 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D LRK53_09000 nuoN; NADH-quinone oxidoreductase subunit NuoN K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D LRK53_12620 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D LRK53_12615 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D LRK53_17240 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D LRK53_12630 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D LRK53_17235 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D LRK53_12625 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D LRK53_17230 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D LRK53_14835 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D LRK53_14830 cytochrome bc complex cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D LRK53_14825 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D LRK53_01315 cyoE; heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] D LRK53_01290 cytochrome c oxidase subunit 3 K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D LRK53_01280 ctaD; cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D LRK53_13080 cbb3-type cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D LRK53_01275 coxB; cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D LRK53_13075 cytochrome oxidase K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D LRK53_14495 c-type cytochrome K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D LRK53_01310 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D LRK53_11780 ccoN; cytochrome-c oxidase, cbb3-type subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D LRK53_11785 ccoO; cytochrome-c oxidase, cbb3-type subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D LRK53_11790 cbb3-type cytochrome c oxidase subunit 3 K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D LRK53_11795 ccoP; cytochrome-c oxidase, cbb3-type subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D LRK53_16850 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D LRK53_16855 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D LRK53_16860 cydX; cytochrome bd-I oxidase subunit CydX K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D LRK53_02185 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D LRK53_02195 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D LRK53_02190 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D LRK53_02180 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D LRK53_02200 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D LRK53_02165 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D LRK53_02175 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D LRK53_02170 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D LRK53_01765 ppa; inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D LRK53_12780 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D LRK53_13595 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D LRK53_06210 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:rth00710] D LRK53_04285 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D LRK53_17145 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D LRK53_00195 type II glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D LRK53_17125 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D LRK53_00140 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D LRK53_17110 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D LRK53_18090 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D LRK53_16900 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D LRK53_11495 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D LRK53_17105 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D LRK53_18075 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D LRK53_16490 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D LRK53_04070 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D LRK53_09435 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00720 Other carbon fixation pathways [PATH:rth00720] D LRK53_12075 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D LRK53_16490 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D LRK53_09435 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D LRK53_15950 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D LRK53_09230 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D LRK53_12620 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D LRK53_12615 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D LRK53_17240 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D LRK53_12630 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D LRK53_17235 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D LRK53_12625 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D LRK53_17230 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D LRK53_05030 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D LRK53_05025 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D LRK53_10540 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_10715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13375 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_17995 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_02675 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D LRK53_09345 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3] D LRK53_17225 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D LRK53_06620 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D LRK53_01615 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D LRK53_01605 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D LRK53_08360 accD; acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D LRK53_16360 VOC family protein K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D LRK53_11165 folD; bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D LRK53_16505 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D LRK53_11580 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D LRK53_11585 acetate/propionate family kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D LRK53_00080 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 00680 Methane metabolism [PATH:rth00680] D LRK53_02700 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D LRK53_07305 fghA; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D LRK53_05390 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D LRK53_10955 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D LRK53_12305 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D LRK53_16490 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D LRK53_09435 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D LRK53_17125 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D LRK53_00140 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D LRK53_01790 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D LRK53_05475 FAD-dependent oxidoreductase K00317 dmd-tmd; dimethylamine/trimethylamine dehydrogenase [EC:1.5.8.1 1.5.8.2] D LRK53_11585 acetate/propionate family kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D LRK53_11580 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D LRK53_00080 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D LRK53_12075 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D LRK53_02545 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D LRK53_10995 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D LRK53_06795 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D LRK53_09750 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D LRK53_10595 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71] D LRK53_10700 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71] C 00910 Nitrogen metabolism [PATH:rth00910] D LRK53_14590 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D LRK53_14595 NarK/NasA family nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D LRK53_14620 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D LRK53_14615 narH; nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D LRK53_14605 narI; respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D LRK53_03045 multicopper oxidase domain-containing protein K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1] D LRK53_14735 nirK; copper-containing nitrite reductase K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1] D LRK53_17185 nirK; copper-containing nitrite reductase K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1] D LRK53_12360 cbb3-type cytochrome c oxidase subunit I K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D LRK53_14500 cbb3-type cytochrome c oxidase subunit I K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D LRK53_14535 nitric-oxide reductase large subunit K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D LRK53_14310 nitrous-oxide reductase K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4] D LRK53_07240 nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D LRK53_10650 nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D LRK53_07945 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D LRK53_00320 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D LRK53_00070 glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D LRK53_00065 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D LRK53_07365 can; carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:rth00920] D LRK53_12180 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D LRK53_12175 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D LRK53_12170 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D LRK53_12165 cysA; sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D LRK53_04490 cysC; adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D LRK53_04485 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D LRK53_05795 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D LRK53_09190 phosphoadenylyl-sulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D LRK53_07050 sulfite reductase flavoprotein subunit alpha K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D LRK53_09180 assimilatory sulfite reductase (NADPH) flavoprotein subunit K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D LRK53_09185 cysI; assimilatory sulfite reductase (NADPH) hemoprotein subunit K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D LRK53_00770 NAD(P)/FAD-dependent oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4] D LRK53_13440 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D LRK53_04690 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D LRK53_09205 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D LRK53_12330 cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D LRK53_14550 PLP-dependent cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D LRK53_04695 homoserine O-succinyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D LRK53_12750 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D LRK53_04700 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D LRK53_16040 acyl-CoA dehydrogenase C-terminal domain-containing protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:rth00061] D LRK53_06620 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D LRK53_01615 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D LRK53_01605 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D LRK53_08360 accD; acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D LRK53_02220 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein D LRK53_06950 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein D LRK53_08890 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D LRK53_08880 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D LRK53_08875 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D LRK53_02270 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D LRK53_14695 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D LRK53_08895 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D LRK53_02255 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LRK53_07375 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LRK53_08885 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LRK53_18050 glucose 1-dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LRK53_14700 fabA; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D LRK53_06655 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D LRK53_02230 hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D LRK53_11910 trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D LRK53_09335 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D LRK53_13650 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:rth00071] D LRK53_10540 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_10715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13375 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_17995 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_11215 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D LRK53_12020 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_13665 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_10545 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D LRK53_10710 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D LRK53_11210 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D LRK53_10660 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D LRK53_10695 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D LRK53_13675 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D LRK53_04600 acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D LRK53_07975 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D LRK53_09335 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D LRK53_13650 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D LRK53_01465 FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D LRK53_02700 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:rth00561] D LRK53_05645 kinase K15918 GLYK; D-glycerate 3-kinase [EC:2.7.1.31] D LRK53_11895 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D LRK53_17825 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D LRK53_03560 plsB; glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D LRK53_05880 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] C 00564 Glycerophospholipid metabolism [PATH:rth00564] D LRK53_03650 NAD(P)-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D LRK53_05245 Fe-S oxidoreductase K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C D LRK53_03560 plsB; glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D LRK53_05880 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D LRK53_13845 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D LRK53_03245 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D LRK53_06680 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D LRK53_03455 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D LRK53_05580 phosphatidylcholine/phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D LRK53_08295 asd; archaetidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D LRK53_15320 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D LRK53_09775 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D LRK53_05445 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D LRK53_16980 haloacid dehalogenase-like hydrolase K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27] D LRK53_11820 phospholipase D-like domain-containing protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D LRK53_17455 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D LRK53_13355 phospholipase D family protein K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] D LRK53_17980 phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase family protein K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] C 00565 Ether lipid metabolism [PATH:rth00565] D LRK53_13845 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00600 Sphingolipid metabolism [PATH:rth00600] D LRK53_17590 glycosyl hydrolase K01201 GBA; glucosylceramidase [EC:3.2.1.45] D LRK53_00825 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00590 Arachidonic acid metabolism [PATH:rth00590] D LRK53_13845 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D LRK53_03500 M1 family metallopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6] C 00591 Linoleic acid metabolism D LRK53_13845 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00592 alpha-Linolenic acid metabolism [PATH:rth00592] D LRK53_13845 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D LRK53_11215 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:rth01040] D LRK53_03630 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D LRK53_05830 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D LRK53_14015 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:rth00230] D LRK53_14880 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D LRK53_05790 nudE; ADP compounds hydrolase NudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D LRK53_10225 nudE; ADP compounds hydrolase NudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D LRK53_14675 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D LRK53_18085 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D LRK53_17895 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D LRK53_06245 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D LRK53_11080 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D LRK53_08695 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D LRK53_02945 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D LRK53_15660 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D LRK53_14035 purT; formate-dependent phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D LRK53_05295 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D LRK53_15655 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D LRK53_14785 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D LRK53_14790 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D LRK53_04265 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D LRK53_09225 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D LRK53_01585 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D LRK53_05235 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D LRK53_07955 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D LRK53_12270 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D LRK53_14670 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D LRK53_05050 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D LRK53_11925 hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D LRK53_11160 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D LRK53_11200 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D LRK53_16800 rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D LRK53_01885 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D LRK53_11155 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D LRK53_16785 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D LRK53_08445 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LRK53_17715 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LRK53_03355 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D LRK53_08440 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D LRK53_16745 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D LRK53_13600 Ppx/GppA family phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D LRK53_15870 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D LRK53_07590 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D LRK53_11935 CYTH domain-containing protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D LRK53_09550 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D LRK53_17820 carbohydrate kinase family protein K00856 ADK; adenosine kinase [EC:2.7.1.20] D LRK53_04010 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D LRK53_14750 ppnN; nucleotide 5'-monophosphate nucleosidase PpnN K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D LRK53_03215 bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D LRK53_01795 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D LRK53_05800 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D LRK53_16200 symmetrical bis(5'-nucleosyl)-tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D LRK53_04490 cysC; adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D LRK53_04485 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] C 00240 Pyrimidine metabolism [PATH:rth00240] D LRK53_11360 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D LRK53_11365 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D LRK53_05705 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D LRK53_03690 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D LRK53_12795 quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D LRK53_17885 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D LRK53_05380 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D LRK53_06695 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D LRK53_11200 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D LRK53_05800 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D LRK53_07260 Maf family nucleotide pyrophosphatase K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D LRK53_17305 M48 family metallopeptidase K07043 upp; UTP pyrophosphatase [EC:3.6.1.-] D LRK53_12320 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D LRK53_11330 cmk; (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D LRK53_07955 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D LRK53_12270 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D LRK53_06810 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D LRK53_03215 bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D LRK53_14750 ppnN; nucleotide 5'-monophosphate nucleosidase PpnN K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D LRK53_06085 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D LRK53_08240 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D LRK53_08445 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LRK53_17715 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LRK53_03355 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D LRK53_08440 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D LRK53_08915 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D LRK53_17900 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LRK53_11075 thymidine phosphorylase family protein K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D LRK53_14680 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D LRK53_03590 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D LRK53_05905 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D LRK53_01680 malonic semialdehyde reductase K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:rth00250] D LRK53_09430 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D LRK53_14705 FAD-dependent oxidoreductase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D LRK53_06135 asparaginase domain-containing protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D LRK53_05855 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D LRK53_09845 asnB; asparagine synthase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D LRK53_15385 amidotransferase 1, exosortase A system-associated K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D LRK53_09305 amidohydrolase K13566 NIT2; omega-amidase [EC:3.5.1.3] D LRK53_04055 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D LRK53_11750 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D LRK53_07545 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D LRK53_07565 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D LRK53_09550 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D LRK53_09225 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D LRK53_05705 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D LRK53_06930 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D LRK53_00070 glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D LRK53_00065 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D LRK53_07945 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D LRK53_01265 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D LRK53_00320 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D LRK53_11360 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D LRK53_11365 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D LRK53_00685 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D LRK53_04320 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D LRK53_11600 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D LRK53_08695 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:rth00260] D LRK53_15945 bifunctional aspartate kinase/diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4] D LRK53_08320 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D LRK53_03165 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D LRK53_04705 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D LRK53_03160 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D LRK53_03155 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D LRK53_16110 ltaE; low-specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D LRK53_05390 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D LRK53_02545 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D LRK53_10995 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D LRK53_05645 kinase K15918 GLYK; D-glycerate 3-kinase [EC:2.7.1.31] D LRK53_06795 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D LRK53_09750 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D LRK53_09490 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D LRK53_09500 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D LRK53_09610 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D LRK53_04495 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D LRK53_04190 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_09150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_04500 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein D LRK53_03455 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D LRK53_05580 phosphatidylcholine/phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D LRK53_04315 pyridoxal-phosphate dependent enzyme K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D LRK53_04370 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D LRK53_04750 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D LRK53_02990 pyridoxal-phosphate dependent enzyme K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D LRK53_03075 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D LRK53_11650 aspartate/glutamate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10] D LRK53_08355 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D LRK53_08350 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:rth00270] D LRK53_04690 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D LRK53_09205 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D LRK53_12330 cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D LRK53_14550 PLP-dependent cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D LRK53_04370 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D LRK53_04315 pyridoxal-phosphate dependent enzyme K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D LRK53_07915 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D LRK53_07920 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D LRK53_16455 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D LRK53_16965 speD; adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D LRK53_17955 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D LRK53_05050 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D LRK53_07470 TRZ/ATZ family hydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D LRK53_11920 S-methyl-5'-thioinosine phosphorylase K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44] D LRK53_09105 mtnA; S-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D LRK53_08510 methylthioribulose 1-phosphate dehydratase K08964 mtnB; methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109] D LRK53_06925 MtnX-like HAD-IB family phosphatase K08966 mtnX; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [EC:3.1.3.87] D LRK53_08500 mtnC; acireductone synthase K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77] D LRK53_08505 acireductone dioxygenase K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] D LRK53_03475 aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D LRK53_01185 GAF domain-containing protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D LRK53_01975 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D LRK53_16495 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D LRK53_03185 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D LRK53_15945 bifunctional aspartate kinase/diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4] D LRK53_08320 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D LRK53_03165 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D LRK53_04705 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D LRK53_04695 homoserine O-succinyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D LRK53_12750 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D LRK53_04700 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D LRK53_03115 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D LRK53_16515 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D LRK53_03695 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D LRK53_05725 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D LRK53_09430 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D LRK53_13440 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D LRK53_11650 aspartate/glutamate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10] D LRK53_09435 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D LRK53_04750 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D LRK53_06795 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D LRK53_09750 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:rth00280] D LRK53_03115 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D LRK53_16515 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D LRK53_13350 Glu/Leu/Phe/Val dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D LRK53_17285 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D LRK53_17290 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D LRK53_07995 thiamine pyrophosphate-dependent enzyme K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D LRK53_17295 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D LRK53_04190 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_09150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_10660 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D LRK53_10695 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D LRK53_13675 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D LRK53_13365 isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D LRK53_12020 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_13665 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_11215 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D LRK53_16360 VOC family protein K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D LRK53_06930 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D LRK53_07685 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D LRK53_13385 methylcrotonoyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D LRK53_07695 enoyl-CoA hydratase-related protein K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18] D LRK53_07680 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D LRK53_16420 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D LRK53_05845 3-oxoacid CoA-transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D LRK53_10540 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_10715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13375 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_17995 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rth00290] D LRK53_02990 pyridoxal-phosphate dependent enzyme K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D LRK53_03075 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D LRK53_03110 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D LRK53_16375 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D LRK53_03105 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D LRK53_16370 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D LRK53_03100 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D LRK53_03085 ilvB; biosynthetic-type acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D LRK53_11830 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D LRK53_03080 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D LRK53_03090 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D LRK53_03095 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D LRK53_03115 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D LRK53_16515 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D LRK53_13350 Glu/Leu/Phe/Val dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D LRK53_04055 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D LRK53_03120 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:rth00300] D LRK53_03165 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D LRK53_04705 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D LRK53_15945 bifunctional aspartate kinase/diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4] D LRK53_08320 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D LRK53_13535 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D LRK53_04195 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D LRK53_11375 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D LRK53_14355 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D LRK53_01815 acetylornithine/succinylornithine family transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D LRK53_14340 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D LRK53_02325 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D LRK53_17040 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D LRK53_16270 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D LRK53_16265 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:rth00310] D LRK53_12805 aldehyde dehydrogenase family protein K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase D LRK53_09155 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D LRK53_04190 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_09150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_07975 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D LRK53_12020 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_13665 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_10540 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_10715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13375 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_17995 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_11650 aspartate/glutamate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10] D LRK53_06930 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] C 00220 Arginine biosynthesis [PATH:rth00220] D LRK53_07530 N-acetylornithine carbamoyltransferase K09065 argF; N-acetylornithine carbamoyltransferase [EC:2.1.3.9] D LRK53_07545 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D LRK53_07565 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D LRK53_17340 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] D LRK53_00320 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D LRK53_11360 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D LRK53_11365 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D LRK53_07945 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D LRK53_09430 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D LRK53_04055 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D LRK53_07555 acetylglutamate kinase K22478 K22478; bifunctional N-acetylglutamate synthase/kinase [EC:2.3.1.1 2.7.2.8] D LRK53_07560 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D LRK53_01815 acetylornithine/succinylornithine family transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D LRK53_07550 acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:rth00330] D LRK53_08720 hydantoinase/oxoprolinase family protein K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D LRK53_16395 hydantoinase/oxoprolinase family protein K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D LRK53_08715 hydantoinase B/oxoprolinase family protein K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14] D LRK53_16390 hydantoinase B/oxoprolinase family protein K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14] D LRK53_17950 speA; arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D LRK53_09810 carbon-nitrogen hydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53] D LRK53_17955 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D LRK53_16965 speD; adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D LRK53_11290 FAD-binding oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D LRK53_17340 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] D LRK53_05680 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D LRK53_01265 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D LRK53_07570 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D LRK53_07575 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D LRK53_03520 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D LRK53_06805 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D LRK53_01770 2OG-Fe(II) oxygenase K00472 P4HA; prolyl 4-hydroxylase [EC:1.14.11.2] D LRK53_09430 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:rth00340] D LRK53_08455 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D LRK53_08490 hisIE; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D LRK53_08480 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D LRK53_08475 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D LRK53_08485 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D LRK53_08470 hisB; bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15] D LRK53_08465 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D LRK53_05785 inositol-phosphate phosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15] D LRK53_08460 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D LRK53_08105 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D LRK53_08775 aromatic amino acid ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D LRK53_08110 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D LRK53_12480 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D LRK53_12565 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D LRK53_12555 formimidoylglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13] D LRK53_07355 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] D LRK53_13975 egtD; L-histidine N(alpha)-methyltransferase K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44] C 00350 Tyrosine metabolism [PATH:rth00350] D LRK53_09430 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D LRK53_08465 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D LRK53_03475 aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D LRK53_17215 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D LRK53_17210 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D LRK53_04290 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D LRK53_17205 fumarylacetoacetate hydrolase family protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D LRK53_14545 pyridoxal-dependent decarboxylase K22330 tyrDC; tyrosine decarboxylase [EC:4.1.1.25] D LRK53_02700 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D LRK53_16600 fumarylacetoacetate hydrolase family protein K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20] C 00360 Phenylalanine metabolism [PATH:rth00360] D LRK53_00200 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D LRK53_10645 enoyl-CoA hydratase-related protein K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D LRK53_09430 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D LRK53_08465 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D LRK53_03475 aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D LRK53_17215 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D LRK53_09560 D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D LRK53_06915 non-heme iron oxygenase ferredoxin subunit K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component D LRK53_01465 FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] C 00380 Tryptophan metabolism [PATH:rth00380] D LRK53_17255 tryptophan 2,3-dioxygenase family protein K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11] D LRK53_12695 FAD-dependent monooxygenase K00486 KMO; kynurenine 3-monooxygenase [EC:1.14.13.9] D LRK53_07620 kynU; kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3] D LRK53_08535 3-hydroxyanthranilate 3,4-dioxygenase K00452 HAAO; 3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6] D LRK53_07630 amidohydrolase K03392 ACMSD; aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45] D LRK53_07370 aldehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D LRK53_10265 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D LRK53_07360 RidA family protein K15067 amnD; 2-aminomuconate deaminase [EC:3.5.99.5] D LRK53_09155 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D LRK53_04190 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_09150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_07975 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D LRK53_12020 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_13665 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_10540 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_10715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13375 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_17995 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13690 catalase K03781 katE; catalase [EC:1.11.1.6] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rth00400] D LRK53_06505 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D LRK53_07220 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D LRK53_05620 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D LRK53_01620 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D LRK53_02375 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D LRK53_05625 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D LRK53_09760 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D LRK53_08310 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D LRK53_17085 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D LRK53_16995 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D LRK53_16990 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D LRK53_08340 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D LRK53_16985 trpC; indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D LRK53_08355 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D LRK53_08350 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D LRK53_09755 pheA; prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D LRK53_09430 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D LRK53_08465 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D LRK53_03475 aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D LRK53_00200 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D LRK53_02215 pteridine-dependent deoxygenase K18240 xanB2; chorismate lyase / 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:rth00410] D LRK53_13490 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D LRK53_06930 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D LRK53_13495 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D LRK53_12020 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_13665 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00430 Taurine and hypotaurine metabolism [PATH:rth00430] D LRK53_15220 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D LRK53_11750 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D LRK53_07945 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D LRK53_11580 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D LRK53_11585 acetate/propionate family kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:rth00450] D LRK53_04700 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D LRK53_07915 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D LRK53_07920 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D LRK53_04370 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D LRK53_06890 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D LRK53_11755 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D LRK53_14295 NAD(P)/FAD-dependent oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D LRK53_04490 cysC; adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D LRK53_04485 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D LRK53_08210 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:rth00460] D LRK53_00850 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D LRK53_09625 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D LRK53_02460 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D LRK53_15220 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D LRK53_06135 asparaginase domain-containing protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D LRK53_05855 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D LRK53_05390 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:rth00470] D LRK53_09565 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D LRK53_16240 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D LRK53_11650 aspartate/glutamate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10] D LRK53_17015 dipeptide epimerase K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25] D LRK53_02325 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D LRK53_17040 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D LRK53_15945 bifunctional aspartate kinase/diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4] D LRK53_09560 D-amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:rth00480] D LRK53_15220 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D LRK53_03695 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D LRK53_05725 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D LRK53_16125 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D LRK53_17735 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D LRK53_02980 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D LRK53_01580 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LRK53_03340 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LRK53_07990 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LRK53_09220 gstA; glutathione transferase GstA K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LRK53_13135 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LRK53_16480 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LRK53_07270 MAPEG family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LRK53_14180 NAD(P)/FAD-dependent oxidoreductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D LRK53_02675 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D LRK53_00585 gnd; decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D LRK53_00675 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D LRK53_13855 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D LRK53_09120 peroxiredoxin K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27] D LRK53_17955 speE; polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:rth00511] D LRK53_00825 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D LRK53_17590 glycosyl hydrolase K01201 GBA; glucosylceramidase [EC:3.2.1.45] C 00540 Lipopolysaccharide biosynthesis [PATH:rth00540] D LRK53_06650 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D LRK53_16220 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D LRK53_06660 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D LRK53_13610 UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D LRK53_06645 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D LRK53_12570 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D LRK53_15680 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D LRK53_12315 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D LRK53_15685 HAD hydrolase family protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D LRK53_09765 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D LRK53_01730 waaA; lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D LRK53_01095 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D LRK53_01725 lpxL; LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D LRK53_13555 aspartyl/asparaginyl beta-hydroxylase domain-containing protein K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D LRK53_08790 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166] D LRK53_02895 O-antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rth00541] D LRK53_11295 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D LRK53_11605 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D LRK53_12035 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D LRK53_06725 NAD-dependent epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D LRK53_11630 NAD-dependent epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D LRK53_04360 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D LRK53_04365 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D LRK53_04355 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D LRK53_04350 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D LRK53_04425 SDR family oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D LRK53_01510 2Fe-2S iron-sulfur cluster-binding protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] D LRK53_04345 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D LRK53_07000 DegT/DnrJ/EryC1/StrS family aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102] D LRK53_02210 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D LRK53_15295 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D LRK53_04420 polysaccharide biosynthesis protein K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D LRK53_04415 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K24256 wbvD; UDP-L-QuiNAc synthase D LRK53_11625 tviB; Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D LRK53_16565 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] C 00550 Peptidoglycan biosynthesis [PATH:rth00550] D LRK53_15670 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D LRK53_12790 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D LRK53_16245 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D LRK53_15935 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K23169 murD2; UDP-N-acetylmuramoyl-L-alanine---L-glutamate ligase [EC:6.3.2.53] D LRK53_15940 endonuclease domain-containing protein K23170 murL; UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase [EC:5.1.1.23] D LRK53_16270 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D LRK53_16240 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D LRK53_16265 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D LRK53_06685 uppS; polyprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D LRK53_00300 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D LRK53_08365 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D LRK53_10850 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D LRK53_10985 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D LRK53_18575 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D LRK53_16260 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D LRK53_16250 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D LRK53_04550 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D LRK53_16710 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D LRK53_15845 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D LRK53_00875 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D LRK53_17800 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D LRK53_16275 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D LRK53_17780 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] C 00552 Teichoic acid biosynthesis [PATH:rth00552] D LRK53_00300 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D LRK53_08365 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D LRK53_10850 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D LRK53_10985 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D LRK53_18575 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:rth00730] D LRK53_03795 thiC; phosphomethylpyrimidine synthase ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D LRK53_03825 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D LRK53_03800 FAD-dependent oxidoreductase K03153 thiO; glycine oxidase [EC:1.4.3.19] D LRK53_16090 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D LRK53_03810 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10] D LRK53_01840 thiE; thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D LRK53_03815 thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D LRK53_05440 thiL; thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D LRK53_04060 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D LRK53_03230 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D LRK53_01795 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:rth00740] D LRK53_05410 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D LRK53_05400 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D LRK53_17730 HAD family hydrolase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] D LRK53_05425 ribE; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D LRK53_05405 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9] D LRK53_07725 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D LRK53_14880 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] C 00750 Vitamin B6 metabolism [PATH:rth00750] D LRK53_05650 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D LRK53_09750 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D LRK53_16185 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D LRK53_00050 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D LRK53_03155 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:rth00760] D LRK53_14705 FAD-dependent oxidoreductase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D LRK53_14710 nadA; quinolinate synthase NadA K03517 nadA; quinolinate synthase [EC:2.5.1.72] D LRK53_14805 nadC; carboxylating nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D LRK53_13875 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D LRK53_14670 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D LRK53_07955 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D LRK53_12270 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D LRK53_07185 nadD; nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D LRK53_05800 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D LRK53_01930 nudC; NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D LRK53_05035 NAD+ synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D LRK53_13645 CinA family protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D LRK53_17470 nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D LRK53_07950 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D LRK53_06090 NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D LRK53_06110 NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D LRK53_06115 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] C 00770 Pantothenate and CoA biosynthesis [PATH:rth00770] D LRK53_03085 ilvB; biosynthetic-type acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D LRK53_11830 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D LRK53_03080 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D LRK53_03090 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D LRK53_03095 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D LRK53_13500 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D LRK53_06900 panE; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D LRK53_13495 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D LRK53_17365 type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D LRK53_17905 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D LRK53_05800 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D LRK53_15235 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D LRK53_05920 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D LRK53_00055 4'-phosphopantetheinyl transferase superfamily protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D LRK53_02575 ACP phosphodiesterase K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14] D LRK53_03115 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D LRK53_16515 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D LRK53_13490 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:rth00780] D LRK53_00510 class I SAM-dependent methyltransferase K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D LRK53_03020 bioC; malonyl-ACP O-methyltransferase BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D LRK53_02270 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D LRK53_14695 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D LRK53_08895 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D LRK53_02255 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LRK53_07375 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LRK53_08885 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LRK53_18050 glucose 1-dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LRK53_06655 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D LRK53_02230 hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D LRK53_03025 bioH; pimeloyl-ACP methyl ester esterase BioH K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D LRK53_03035 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D LRK53_05775 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D LRK53_01195 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D LRK53_03040 bioB; biotin synthase BioB K01012 bioB; biotin synthase [EC:2.8.1.6] D LRK53_17370 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:rth00785] D LRK53_17770 lipB; lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D LRK53_12345 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D LRK53_17765 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D LRK53_14225 lipoate--protein ligase family protein K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D LRK53_04190 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_09150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_04075 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D LRK53_04185 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D LRK53_09160 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D LRK53_09155 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D LRK53_17285 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D LRK53_17290 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D LRK53_07995 thiamine pyrophosphate-dependent enzyme K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D LRK53_17295 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D LRK53_09610 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D LRK53_04495 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D LRK53_04500 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:rth00790] D LRK53_00645 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D LRK53_01455 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D LRK53_07495 folE2; GTP cyclohydrolase FolE2 K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16] D LRK53_03230 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D LRK53_07670 NUDIX domain-containing protein K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67] D LRK53_02840 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D LRK53_02845 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D LRK53_13505 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D LRK53_11520 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D LRK53_05910 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D LRK53_08680 folC; bifunctional tetrahydrofolate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D LRK53_05410 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D LRK53_08900 aminodeoxychorismate synthase component I K25578 pabB; 4-amino-4-deoxychorismate synthase (2-amino-4-deoxychorismate-forming) component I [EC:2.6.1.123] D LRK53_08905 pabC; aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D LRK53_02150 queD; 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D LRK53_11460 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D LRK53_00200 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D LRK53_01100 pteridine reductase K03793 PTR1; pteridine reductase [EC:1.5.1.33] D LRK53_05170 queE; 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D LRK53_05175 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D LRK53_03330 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D LRK53_14655 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D LRK53_14635 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D LRK53_14645 molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D LRK53_14630 molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:rth00670] D LRK53_05910 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D LRK53_11165 folD; bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D LRK53_05390 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D LRK53_15660 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D LRK53_01585 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D LRK53_02910 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D LRK53_04495 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D LRK53_07915 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D LRK53_07920 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D LRK53_05905 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D LRK53_16505 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D LRK53_16890 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:rth00860] D LRK53_08380 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D LRK53_06220 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D LRK53_01835 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D LRK53_03685 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D LRK53_18100 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D LRK53_01535 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D LRK53_05610 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D LRK53_02285 hemF; oxygen-dependent coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D LRK53_17200 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D LRK53_04830 CopD family protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D LRK53_06720 CopD family protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D LRK53_03930 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D LRK53_01540 uroporphyrinogen-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D LRK53_09200 cysG; siroheme synthase CysG K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D LRK53_01315 cyoE; heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] D LRK53_01310 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D LRK53_18360 AAA family ATPase K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2] D LRK53_16165 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D LRK53_01750 DUF892 family protein K03594 bfr; bacterioferritin [EC:1.16.3.1] D LRK53_01950 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rth00130] D LRK53_02215 pteridine-dependent deoxygenase K18240 xanB2; chorismate lyase / 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45] D LRK53_03065 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D LRK53_16150 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D LRK53_03195 ubiG; bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D LRK53_07480 ubiG; bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D LRK53_16155 ubiH; 2-octaprenyl-6-methoxyphenyl hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D LRK53_03550 ubiE; bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D LRK53_16925 coq7; 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D LRK53_01505 hotdog fold thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D LRK53_06160 wrbA; NAD(P)H:quinone oxidoreductase K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D LRK53_17215 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:rth00900] D LRK53_16090 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D LRK53_06675 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D LRK53_12295 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D LRK53_06235 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D LRK53_12290 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D LRK53_11775 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D LRK53_07750 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D LRK53_10540 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_10715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13375 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_17995 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_02345 hydroxymethylglutaryl-CoA reductase, degradative K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] D LRK53_02350 hypothetical protein K00938 E2.7.4.2; phosphomevalonate kinase [EC:2.7.4.2] D LRK53_02355 mvaD; diphosphomevalonate decarboxylase K01597 MVD; diphosphomevalonate decarboxylase [EC:4.1.1.33] D LRK53_02340 idi; isopentenyl-diphosphate Delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D LRK53_06600 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D LRK53_04785 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D LRK53_06685 uppS; polyprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis [PATH:rth00906] D LRK53_07490 phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation [PATH:rth00907] D LRK53_12020 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_13665 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_05455 NAD(P)-dependent alcohol dehydrogenase K12957 ahr; alcohol/geraniol dehydrogenase (NADP+) [EC:1.1.1.2 1.1.1.183] D LRK53_01810 NAD(P)-dependent oxidoreductase K13775 atuG; citronellol/citronellal dehydrogenase D LRK53_07680 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D LRK53_16420 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D LRK53_11215 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D LRK53_17110 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D LRK53_18090 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:rth00523] D LRK53_04360 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D LRK53_04365 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D LRK53_04355 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D LRK53_04350 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D LRK53_04425 SDR family oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D LRK53_04365 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:rth00946] D LRK53_00850 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D LRK53_09625 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D LRK53_02460 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D LRK53_14240 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11] C 00332 Carbapenem biosynthesis [PATH:rth00332] D LRK53_07570 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D LRK53_07575 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:rth00261] D LRK53_04490 cysC; adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D LRK53_04485 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D LRK53_15945 bifunctional aspartate kinase/diaminopimelate decarboxylase K12526 lysAC; bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4] D LRK53_08320 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D LRK53_13535 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D LRK53_04195 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D LRK53_11375 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:rth00521] D LRK53_00815 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D LRK53_03675 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D LRK53_18085 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D LRK53_17895 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D LRK53_15635 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D LRK53_04360 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D LRK53_04365 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D LRK53_04355 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D LRK53_04350 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D LRK53_04425 SDR family oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D LRK53_00815 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D LRK53_03675 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:rth00525] D LRK53_03190 sedoheptulose 7-phosphate cyclase K19969 acbC; 2-epi-5-epi-valiolone synthase [EC:4.2.3.152] D LRK53_04360 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D LRK53_04365 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:rth00401] D LRK53_09430 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D LRK53_08465 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D LRK53_03475 aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis D LRK53_02435 tryptophan 7-halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] D LRK53_15490 tryptophan 7-halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] C 00405 Phenazine biosynthesis D LRK53_17085 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D LRK53_16995 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D LRK53_08880 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D LRK53_02255 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LRK53_07375 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LRK53_08885 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LRK53_18050 glucose 1-dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D LRK53_02220 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein D LRK53_06950 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein D LRK53_08890 acpP; acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:rth00999] D LRK53_16455 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D LRK53_02375 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D LRK53_00850 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D LRK53_09625 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D LRK53_02460 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:rth00362] D LRK53_11215 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D LRK53_10135 phenol hydroxylase subunit K16249 dmpK; phenol/toluene 2-monooxygenase (NADH) P0/A0 D LRK53_10140 aromatic/alkene monooxygenase hydroxylase subunit beta K16243 dmpL; phenol/toluene 2-monooxygenase (NADH) P1/A1 [EC:1.14.13.244 1.14.13.243] D LRK53_10145 MmoB/DmpM family protein K16244 dmpM; phenol/toluene 2-monooxygenase (NADH) P2/A2 [EC:1.14.13.244 1.14.13.243] D LRK53_10150 aromatic/alkene/methane monooxygenase hydroxylase/oxygenase subunit alpha K16242 dmpN; phenol/toluene 2-monooxygenase (NADH) P3/A3 [EC:1.14.13.244 1.14.13.243] D LRK53_10155 phenol hydroxylase subunit P4 K16245 dmpO; phenol/toluene 2-monooxygenase (NADH) P4/A4 [EC:1.14.13.244 1.14.13.243] D LRK53_10245 FAD-binding oxidoreductase K16246 dmpP; phenol/toluene 2-monooxygenase (NADH) P5/A5 [EC:1.14.13.244 1.14.13.243] D LRK53_10255 catechol 2,3-dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2] D LRK53_10270 alpha/beta fold hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9] D LRK53_10275 dmpE; 2-oxopent-4-enoate hydratase K18364 bphH; 2-oxopent-4-enoate/cis-2-oxohex-4-enoate hydratase [EC:4.2.1.80 4.2.1.132] D LRK53_10290 dmpG; 4-hydroxy-2-oxovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43] D LRK53_10285 acetaldehyde dehydrogenase (acetylating) K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] D LRK53_07370 aldehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D LRK53_10265 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D LRK53_10280 dmpH; 2-oxo-3-hexenedioate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77] D LRK53_01465 FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D LRK53_12020 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_13665 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_10545 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D LRK53_10710 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D LRK53_11210 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D LRK53_07975 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D LRK53_10540 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_10715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13375 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_17995 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation D LRK53_06175 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] C 00364 Fluorobenzoate degradation [PATH:rth00364] D LRK53_08255 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00625 Chloroalkane and chloroalkene degradation [PATH:rth00625] D LRK53_02700 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D LRK53_10625 alpha/beta hydrolase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3] D LRK53_09990 haloacid dehalogenase type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D LRK53_08220 HAD family phosphatase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:rth00361] D LRK53_10135 phenol hydroxylase subunit K16249 dmpK; phenol/toluene 2-monooxygenase (NADH) P0/A0 D LRK53_10140 aromatic/alkene monooxygenase hydroxylase subunit beta K16243 dmpL; phenol/toluene 2-monooxygenase (NADH) P1/A1 [EC:1.14.13.244 1.14.13.243] D LRK53_10145 MmoB/DmpM family protein K16244 dmpM; phenol/toluene 2-monooxygenase (NADH) P2/A2 [EC:1.14.13.244 1.14.13.243] D LRK53_10150 aromatic/alkene/methane monooxygenase hydroxylase/oxygenase subunit alpha K16242 dmpN; phenol/toluene 2-monooxygenase (NADH) P3/A3 [EC:1.14.13.244 1.14.13.243] D LRK53_10155 phenol hydroxylase subunit P4 K16245 dmpO; phenol/toluene 2-monooxygenase (NADH) P4/A4 [EC:1.14.13.244 1.14.13.243] D LRK53_10245 FAD-binding oxidoreductase K16246 dmpP; phenol/toluene 2-monooxygenase (NADH) P5/A5 [EC:1.14.13.244 1.14.13.243] D LRK53_08255 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D LRK53_10255 catechol 2,3-dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2] D LRK53_09990 haloacid dehalogenase type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D LRK53_08220 HAD family phosphatase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D LRK53_10625 alpha/beta hydrolase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3] C 00623 Toluene degradation [PATH:rth00623] D LRK53_10135 phenol hydroxylase subunit K16249 dmpK; phenol/toluene 2-monooxygenase (NADH) P0/A0 D LRK53_10140 aromatic/alkene monooxygenase hydroxylase subunit beta K16243 dmpL; phenol/toluene 2-monooxygenase (NADH) P1/A1 [EC:1.14.13.244 1.14.13.243] D LRK53_10145 MmoB/DmpM family protein K16244 dmpM; phenol/toluene 2-monooxygenase (NADH) P2/A2 [EC:1.14.13.244 1.14.13.243] D LRK53_10150 aromatic/alkene/methane monooxygenase hydroxylase/oxygenase subunit alpha K16242 dmpN; phenol/toluene 2-monooxygenase (NADH) P3/A3 [EC:1.14.13.244 1.14.13.243] D LRK53_10155 phenol hydroxylase subunit P4 K16245 dmpO; phenol/toluene 2-monooxygenase (NADH) P4/A4 [EC:1.14.13.244 1.14.13.243] D LRK53_10245 FAD-binding oxidoreductase K16246 dmpP; phenol/toluene 2-monooxygenase (NADH) P5/A5 [EC:1.14.13.244 1.14.13.243] D LRK53_00385 aldehyde dehydrogenase family protein K20199 pchA; 4-hydroxybenzaldehyde dehydrogenase (NADP+) [EC:1.2.1.96] D LRK53_08255 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation [PATH:rth00622] D LRK53_10255 catechol 2,3-dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2] D LRK53_10270 alpha/beta fold hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9] D LRK53_07370 aldehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D LRK53_10265 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D LRK53_10280 dmpH; 2-oxo-3-hexenedioate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77] D LRK53_10275 dmpE; 2-oxopent-4-enoate hydratase K18364 bphH; 2-oxopent-4-enoate/cis-2-oxohex-4-enoate hydratase [EC:4.2.1.80 4.2.1.132] D LRK53_10290 dmpG; 4-hydroxy-2-oxovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43] D LRK53_10285 acetaldehyde dehydrogenase (acetylating) K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation D LRK53_11215 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:rth00643] D LRK53_17210 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D LRK53_04290 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D LRK53_17205 fumarylacetoacetate hydrolase family protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D LRK53_10255 catechol 2,3-dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2] D LRK53_10270 alpha/beta fold hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9] C 00791 Atrazine degradation C 00930 Caprolactam degradation [PATH:rth00930] D LRK53_12020 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D LRK53_13665 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation C 00621 Dioxin degradation [PATH:rth00621] D LRK53_10280 dmpH; 2-oxo-3-hexenedioate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77] D LRK53_10275 dmpE; 2-oxopent-4-enoate hydratase K18364 bphH; 2-oxopent-4-enoate/cis-2-oxohex-4-enoate hydratase [EC:4.2.1.80 4.2.1.132] D LRK53_10290 dmpG; 4-hydroxy-2-oxovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43] D LRK53_10285 acetaldehyde dehydrogenase (acetylating) K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] C 00626 Naphthalene degradation [PATH:rth00626] D LRK53_02700 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:rth03020] D LRK53_06335 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D LRK53_06340 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D LRK53_06490 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D LRK53_16750 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:rth03010] D LRK53_11325 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D LRK53_06705 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D LRK53_06400 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D LRK53_06485 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D LRK53_06455 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D LRK53_07400 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D LRK53_06350 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D LRK53_06440 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D LRK53_16915 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D LRK53_06365 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D LRK53_06480 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D LRK53_06345 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D LRK53_06475 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D LRK53_06435 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D LRK53_09085 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D LRK53_07435 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D LRK53_06415 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D LRK53_07405 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D LRK53_06390 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D LRK53_07715 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D LRK53_01365 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D LRK53_06320 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D LRK53_06385 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D LRK53_06370 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D LRK53_06375 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D LRK53_06430 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D LRK53_06445 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D LRK53_06330 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D LRK53_07410 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D LRK53_06325 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D LRK53_06315 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D LRK53_16920 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D LRK53_06420 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D LRK53_06465 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D LRK53_06405 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D LRK53_06495 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D LRK53_06450 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D LRK53_07450 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D LRK53_06755 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D LRK53_13410 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D LRK53_06395 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D LRK53_06380 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D LRK53_06425 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D LRK53_06250 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D LRK53_13405 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D LRK53_03640 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D LRK53_06410 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D LRK53_06460 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D LRK53_16725 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D LRK53_08870 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D LRK53_03635 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D LRK53_18115 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D LRK53_06750 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D LRK53_11350 ykgO; type B 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D LRK53_17850 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D LRK53_01855 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D LRK53_17835 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D LRK53_01870 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D LRK53_01875 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D LRK53_17830 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:rth00970] D LRK53_12050 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D LRK53_01865 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D LRK53_17840 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D LRK53_12775 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D LRK53_12230 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D LRK53_03290 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D LRK53_12220 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D LRK53_12810 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D LRK53_14745 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D LRK53_12060 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D LRK53_12120 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D LRK53_09790 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D LRK53_06240 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D LRK53_16910 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D LRK53_13515 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D LRK53_12055 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D LRK53_09780 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D LRK53_09785 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D LRK53_16540 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D LRK53_06285 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D LRK53_12215 tRNA-His K14226 tRNA-His; tRNA His D LRK53_01860 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D LRK53_17845 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D LRK53_09800 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LRK53_12760 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LRK53_09650 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LRK53_11485 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LRK53_12155 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LRK53_05180 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D LRK53_12210 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D LRK53_09005 tRNA-Met K14230 tRNA-Met; tRNA Met D LRK53_01080 tRNA-Ile K14230 tRNA-Met; tRNA Met D LRK53_01965 tRNA-Met K14230 tRNA-Met; tRNA Met D LRK53_15265 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D LRK53_12225 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D LRK53_08760 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D LRK53_06780 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D LRK53_11685 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D LRK53_13620 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D LRK53_08805 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D LRK53_12080 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D LRK53_06290 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D LRK53_17355 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D LRK53_07785 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D LRK53_06300 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D LRK53_06280 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D LRK53_12125 tRNA-Val K14237 tRNA-Val; tRNA Val D LRK53_07905 tRNA-Val K14237 tRNA-Val; tRNA Val D LRK53_14370 tRNA-Val K14237 tRNA-Val; tRNA Val D LRK53_08380 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D LRK53_05225 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D LRK53_13630 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D LRK53_05100 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D LRK53_07390 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D LRK53_01895 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D LRK53_01900 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D LRK53_06730 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D LRK53_11695 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D LRK53_07520 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D LRK53_08210 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D LRK53_02910 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D LRK53_05600 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D LRK53_07170 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D LRK53_07740 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D LRK53_09860 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D LRK53_17915 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D LRK53_05570 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D LRK53_08765 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D LRK53_06760 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D LRK53_06765 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D LRK53_17855 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D LRK53_17330 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:rth03060] D LRK53_06470 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D LRK53_06305 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D LRK53_11490 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D LRK53_06850 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D LRK53_06855 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D LRK53_06845 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D LRK53_18105 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D LRK53_16205 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D LRK53_03645 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D LRK53_07430 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D LRK53_08810 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D LRK53_15245 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D LRK53_03940 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D LRK53_14335 tatA; twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D LRK53_03945 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB D LRK53_03950 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC D LRK53_11985 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D LRK53_07745 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:rth04122] D LRK53_13440 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D LRK53_09715 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D LRK53_14635 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D LRK53_14655 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D LRK53_14640 MoaD/ThiS family protein K03636 moaD; sulfur-carrier protein D LRK53_14665 moeB; molybdopterin-synthase adenylyltransferase MoeB K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-] D LRK53_03805 thiS; sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome C 03018 RNA degradation [PATH:rth03018] D LRK53_01960 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D LRK53_11470 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] D LRK53_03710 DEAD/DEAH box helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D LRK53_10955 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D LRK53_12305 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D LRK53_09090 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D LRK53_10195 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D LRK53_07310 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D LRK53_09655 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D LRK53_07300 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D LRK53_15600 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D LRK53_03700 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D LRK53_11385 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D LRK53_01650 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D LRK53_10190 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D LRK53_09525 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D LRK53_12780 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D LRK53_13595 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D LRK53_06210 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D LRK53_13510 pcnB; polynucleotide adenylyltransferase PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:rth03030] D LRK53_12090 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D LRK53_06630 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D LRK53_08815 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D LRK53_08920 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D LRK53_07180 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D LRK53_16130 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D LRK53_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D LRK53_19130 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D LRK53_07415 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D LRK53_18435 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D LRK53_01345 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D LRK53_04845 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LRK53_18215 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LRK53_12095 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D LRK53_06640 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D LRK53_01570 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D LRK53_03765 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D LRK53_11560 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:rth03410] D LRK53_08200 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D LRK53_03730 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D LRK53_15255 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D LRK53_14140 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D LRK53_03605 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D LRK53_11260 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D LRK53_12520 helix-turn-helix domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D LRK53_03005 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D LRK53_06530 mismatch-specific DNA-glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] D LRK53_02070 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D LRK53_02400 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D LRK53_17880 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D LRK53_01570 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D LRK53_09835 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D LRK53_18145 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D LRK53_03765 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D LRK53_11560 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:rth03420] D LRK53_08005 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D LRK53_13420 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D LRK53_14375 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D LRK53_09770 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D LRK53_01560 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D LRK53_18405 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D LRK53_01570 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D LRK53_03765 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D LRK53_11560 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:rth03430] D LRK53_13685 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D LRK53_13465 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D LRK53_01560 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D LRK53_18405 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D LRK53_11530 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D LRK53_11825 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D LRK53_06605 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D LRK53_09835 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D LRK53_18145 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D LRK53_04845 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LRK53_18215 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LRK53_06630 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D LRK53_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D LRK53_19130 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D LRK53_08815 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D LRK53_07180 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D LRK53_08920 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D LRK53_12090 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D LRK53_16130 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D LRK53_03765 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D LRK53_11560 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:rth03440] D LRK53_09835 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D LRK53_18145 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D LRK53_04845 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LRK53_18215 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LRK53_00015 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D LRK53_11965 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D LRK53_08825 recR; recombination mediator RecR K06187 recR; recombination protein RecR D LRK53_13640 recA; recombinase RecA K03553 recA; recombination protein RecA D LRK53_01570 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D LRK53_05120 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D LRK53_05130 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D LRK53_05115 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D LRK53_16735 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D LRK53_18225 DEAD/DEAH box helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D LRK53_07845 UvrD-helicase domain-containing protein K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D LRK53_07850 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D LRK53_07840 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D LRK53_06630 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D LRK53_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D LRK53_19130 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D LRK53_08815 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D LRK53_07180 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D LRK53_08920 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D LRK53_12090 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D LRK53_16130 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D LRK53_03955 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining D LRK53_18180 WGR domain-containing protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:rth03250] D LRK53_13605 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:rth02010] D LRK53_12180 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D LRK53_12175 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D LRK53_12170 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D LRK53_12165 cysA; sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D LRK53_14570 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D LRK53_14575 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D LRK53_14580 modC; molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D LRK53_13010 ABC transporter permease subunit K05845 opuC; osmoprotectant transport system substrate-binding protein D LRK53_13005 ATP-binding cassette domain-containing protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D LRK53_02465 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D LRK53_16765 ABC transporter substrate-binding protein K07323 mlaC; phospholipid transport system substrate-binding protein D LRK53_16770 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D LRK53_16775 mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D LRK53_16760 STAS domain-containing protein K07122 mlaB; phospholipid transport system transporter-binding protein D LRK53_16780 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D LRK53_09695 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D LRK53_17725 substrate-binding domain-containing protein K02040 pstS; phosphate transport system substrate-binding protein D LRK53_09690 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D LRK53_09685 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein D LRK53_09680 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D LRK53_13870 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D LRK53_13865 ABC transporter permease K02072 metI; D-methionine transport system permease protein D LRK53_13860 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D LRK53_04375 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein D LRK53_04380 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D LRK53_01445 ABC transporter permease subunit K09696 natB; sodium transport system permease protein D LRK53_01440 ATP-binding cassette domain-containing protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D LRK53_12600 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein D LRK53_12595 lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D LRK53_12720 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D D LRK53_12715 heme ABC transporter permease K02195 ccmC; heme exporter protein C D LRK53_12710 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D LRK53_12705 ccmA; cytochrome c biogenesis heme-transporting ATPase CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D LRK53_16120 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein D LRK53_16115 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D LRK53_15700 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D LRK53_14325 ABC transporter permease K19341 nosY; Cu-processing system permease protein D LRK53_14320 ABC transporter ATP-binding protein K19340 nosF; Cu-processing system ATP-binding protein D LRK53_03720 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D LRK53_03715 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D LRK53_12575 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D LRK53_08630 ABC transporter ATP-binding protein/permease K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump C 02060 Phosphotransferase system (PTS) [PATH:rth02060] D LRK53_15735 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D LRK53_15730 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D LRK53_15725 PTS fructose IIA subunit family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] C 03070 Bacterial secretion system [PATH:rth03070] D LRK53_01735 TolC family outer membrane protein K12340 tolC; outer membrane protein D LRK53_02780 gspD; type II secretion system secretin GspD K02453 gspD; general secretion pathway protein D D LRK53_02735 gspF; type II secretion system inner membrane protein GspF K02455 gspF; general secretion pathway protein F D LRK53_02740 gspG; type II secretion system major pseudopilin GspG K02456 gspG; general secretion pathway protein G D LRK53_02745 GspH/FimT family pseudopilin K02457 gspH; general secretion pathway protein H D LRK53_02750 prepilin-type N-terminal cleavage/methylation domain-containing protein K02458 gspI; general secretion pathway protein I D LRK53_02755 prepilin-type N-terminal cleavage/methylation domain-containing protein K02459 gspJ; general secretion pathway protein J D LRK53_02760 general secretion pathway protein GspK K02460 gspK; general secretion pathway protein K D LRK53_02765 PilN domain-containing protein K02461 gspL; general secretion pathway protein L D LRK53_02770 gspM; type II secretion system protein GspM K02462 gspM; general secretion pathway protein M D LRK53_01890 GspE/PulE family protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D LRK53_02730 gspE; type II secretion system ATPase GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D LRK53_06850 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D LRK53_06855 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D LRK53_06305 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D LRK53_11490 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D LRK53_06470 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D LRK53_06845 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D LRK53_18105 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D LRK53_16205 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D LRK53_15245 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D LRK53_03645 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D LRK53_07430 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D LRK53_03940 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D LRK53_14335 tatA; twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D LRK53_03945 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB D LRK53_03950 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:rth02020] D LRK53_13590 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D LRK53_13585 phoB; phosphate regulon transcriptional regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D LRK53_03230 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D LRK53_09695 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D LRK53_17725 substrate-binding domain-containing protein K02040 pstS; phosphate transport system substrate-binding protein D LRK53_17385 two-component sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D LRK53_17390 response regulator transcription factor K07660 phoP; two-component system, OmpR family, response regulator PhoP D LRK53_11995 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D LRK53_17720 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D LRK53_02585 efflux RND transporter periplasmic adaptor subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D LRK53_02595 efflux RND transporter permease subunit K07788 mdtB; multidrug efflux pump D LRK53_00700 efflux RND transporter permease subunit K07789 mdtC; multidrug efflux pump D LRK53_00705 efflux RND transporter permease subunit K07789 mdtC; multidrug efflux pump D LRK53_02600 efflux RND transporter permease subunit K07789 mdtC; multidrug efflux pump D LRK53_08095 copper-binding protein K07810 cusF; Cu(I)/Ag(I) efflux system periplasmic protein CusF D LRK53_08085 efflux RND transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D LRK53_10900 efflux RND transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D LRK53_18525 efflux RND transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D LRK53_08090 CusA/CzcA family heavy metal efflux RND transporter K07787 cusA; copper/silver efflux system protein D LRK53_10895 CusA/CzcA family heavy metal efflux RND transporter K07787 cusA; copper/silver efflux system protein D LRK53_18530 CusA/CzcA family heavy metal efflux RND transporter K07787 cusA; copper/silver efflux system protein D LRK53_00900 two-component sensor histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D LRK53_00905 response regulator K07666 qseB; two-component system, OmpR family, response regulator QseB D LRK53_14995 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA D LRK53_14975 flagellar motor protein K02556 motA; chemotaxis protein MotA D LRK53_01310 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D LRK53_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D LRK53_17090 ATP-binding protein K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D LRK53_17055 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D LRK53_00615 histidine kinase K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3] D LRK53_00610 LytTR family DNA-binding domain-containing protein K08083 algR; two-component system, LytTR family, response regulator AlgR D LRK53_01440 ATP-binding cassette domain-containing protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D LRK53_01445 ABC transporter permease subunit K09696 natB; sodium transport system permease protein D LRK53_14620 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D LRK53_14615 narH; nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D LRK53_14605 narI; respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D LRK53_14610 narJ; nitrate reductase molybdenum cofactor assembly chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW D LRK53_11410 MASE1 domain-containing protein K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3] D LRK53_11405 response regulator transcription factor K20264 fusR; two-component system, NarL family, response regulator FusR D LRK53_11475 response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D LRK53_13625 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator D LRK53_18800 carbon storage regulator K03563 csrA; carbon storage regulator D LRK53_04515 beta-lactamase family protein K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D LRK53_01405 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein D LRK53_06715 glnD; [protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D LRK53_00310 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1 D LRK53_10860 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1 D LRK53_18565 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1 D LRK53_00565 two-component sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D LRK53_00570 ntrC; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D LRK53_00320 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D LRK53_16585 TIGR00366 family protein K02106 atoE; short-chain fatty acids transporter D LRK53_10540 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_10715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13375 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_17995 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_05020 HAMP domain-containing histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D LRK53_04990 sigma-54 dependent transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR D LRK53_15705 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor D LRK53_06010 pilin K02650 pilA; type IV pilus assembly protein PilA D LRK53_06015 pilin K02650 pilA; type IV pilus assembly protein PilA D LRK53_14915 protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D LRK53_08175 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D LRK53_14900 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D LRK53_14930 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D LRK53_15185 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D LRK53_14925 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D LRK53_14965 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D LRK53_14935 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D LRK53_14980 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D LRK53_14940 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D LRK53_14990 chemotaxis response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D LRK53_14905 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D LRK53_15180 chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D LRK53_18880 hypothetical protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D LRK53_05745 methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ D LRK53_05740 chemotaxis protein CheW K02659 pilI; twitching motility protein PilI D LRK53_05750 Hpt domain-containing protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D LRK53_05730 pilG; twitching motility response regulator PilG K02657 pilG; twitching motility two-component system response regulator PilG D LRK53_05735 response regulator K02658 pilH; twitching motility two-component system response regulator PilH D LRK53_09135 pilH; twitching motility response regulator PilH K02658 pilH; twitching motility two-component system response regulator PilH D LRK53_05755 chemotaxis protein CheB K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase) D LRK53_05760 chemotaxis protein CheW K06598 chpC; chemosensory pili system protein ChpC D LRK53_15090 sigma-54-dependent Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D LRK53_16970 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D LRK53_05870 ATP-binding protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D LRK53_05865 response regulator transcription factor K15012 regA; two-component system, response regulator RegA D LRK53_14835 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D LRK53_14830 cytochrome bc complex cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D LRK53_14825 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D LRK53_11780 ccoN; cytochrome-c oxidase, cbb3-type subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D LRK53_11785 ccoO; cytochrome-c oxidase, cbb3-type subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D LRK53_11790 cbb3-type cytochrome c oxidase subunit 3 K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D LRK53_11795 ccoP; cytochrome-c oxidase, cbb3-type subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D LRK53_16850 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D LRK53_16855 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D LRK53_16860 cydX; cytochrome bd-I oxidase subunit CydX K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D LRK53_01735 TolC family outer membrane protein K12340 tolC; outer membrane protein D LRK53_15435 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D LRK53_11610 low molecular weight phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D LRK53_15295 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D LRK53_14895 STAS domain-containing protein K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor D LRK53_15195 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis [PATH:rth04148] D LRK53_17340 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1] D LRK53_14835 petA; ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:rth02024] D LRK53_03185 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D LRK53_09525 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D LRK53_17085 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D LRK53_16995 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D LRK53_06505 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D LRK53_07220 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D LRK53_00900 two-component sensor histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D LRK53_00905 response regulator K07666 qseB; two-component system, OmpR family, response regulator QseB D LRK53_11410 MASE1 domain-containing protein K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3] D LRK53_11405 response regulator transcription factor K20264 fusR; two-component system, NarL family, response regulator FusR D LRK53_04865 APC family permease K20265 gadC; glutamate:GABA antiporter D LRK53_09030 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D LRK53_09040 ABC transporter permease subunit K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D LRK53_09035 ABC transporter permease subunit K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D LRK53_09335 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D LRK53_13650 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D LRK53_16970 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D LRK53_08415 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D LRK53_05400 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D LRK53_18105 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D LRK53_06305 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D LRK53_11490 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D LRK53_06470 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D LRK53_06845 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D LRK53_16205 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D LRK53_15245 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D LRK53_03645 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D LRK53_07430 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:rth02030] D LRK53_08175 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D LRK53_14900 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D LRK53_14930 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D LRK53_15185 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D LRK53_14935 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D LRK53_14980 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D LRK53_14925 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D LRK53_14965 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D LRK53_14940 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D LRK53_14990 chemotaxis response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D LRK53_14985 protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ D LRK53_14905 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D LRK53_15180 chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D LRK53_18880 hypothetical protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D LRK53_14910 cheD; chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D LRK53_14915 protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D LRK53_15075 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D LRK53_15045 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D LRK53_15040 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D LRK53_14975 flagellar motor protein K02556 motA; chemotaxis protein MotA D LRK53_14970 motD; flagellar motor protein MotD K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:rth02040] D LRK53_15085 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D LRK53_15080 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D LRK53_15075 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D LRK53_15070 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D LRK53_15065 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D LRK53_15060 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D LRK53_15055 flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK D LRK53_15050 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL D LRK53_15045 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D LRK53_15040 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D LRK53_15035 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D LRK53_15030 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP D LRK53_15025 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D LRK53_15020 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D LRK53_15010 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D LRK53_15015 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D LRK53_15190 flgA; flagellar basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D LRK53_15175 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D LRK53_15170 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D LRK53_15165 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D LRK53_15160 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D LRK53_15155 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D LRK53_15150 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D LRK53_15145 flgH; flagellar basal body L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH D LRK53_15140 flagellar basal body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI D LRK53_15135 flgJ; flagellar assembly peptidoglycan hydrolase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D LRK53_15130 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D LRK53_15125 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D LRK53_15110 fliD; flagellar filament capping protein FliD K02407 fliD; flagellar hook-associated protein 2 D LRK53_15105 fliS; flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS D LRK53_15100 flagellar protein FliT K02423 fliT; flagellar protein FliT D LRK53_14975 flagellar motor protein K02556 motA; chemotaxis protein MotA D LRK53_14970 motD; flagellar motor protein MotD K02557 motB; chemotaxis protein MotB D LRK53_15195 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D LRK53_15200 flagellar protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN D LRK53_01085 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D LRK53_15090 sigma-54-dependent Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D LRK53_15705 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor D LRK53_14995 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D LRK53_10955 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D LRK53_12305 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:rth04980] D LRK53_16165 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D LRK53_07915 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D LRK53_07920 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:rth01501] D LRK53_17875 MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D LRK53_11930 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D LRK53_04515 beta-lactamase family protein K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D LRK53_07940 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D LRK53_07935 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D LRK53_01735 TolC family outer membrane protein K12340 tolC; outer membrane protein D LRK53_16710 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D LRK53_17800 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D LRK53_16275 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:rth01502] D LRK53_17055 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D LRK53_16240 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D LRK53_09565 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D LRK53_16265 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D LRK53_16260 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D LRK53_16250 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rth01503] D LRK53_17385 two-component sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D LRK53_17390 response regulator transcription factor K07660 phoP; two-component system, OmpR family, response regulator PhoP D LRK53_13470 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D LRK53_11995 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D LRK53_17720 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D LRK53_01165 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D LRK53_01170 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D LRK53_13605 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D LRK53_07940 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D LRK53_07935 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D LRK53_01735 TolC family outer membrane protein K12340 tolC; outer membrane protein D LRK53_06650 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:rth01000] C 01001 Protein kinases [BR:rth01001] D LRK53_12865 serine protein kinase RIO K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D LRK53_15455 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D LRK53_16945 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D LRK53_02660 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D LRK53_03890 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D LRK53_04715 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D LRK53_15425 exopolysaccharide biosynthesis protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D LRK53_13590 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D LRK53_17385 two-component sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D LRK53_00900 two-component sensor histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D LRK53_17090 ATP-binding protein K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D LRK53_14455 two-component sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D LRK53_11410 MASE1 domain-containing protein K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3] D LRK53_00615 histidine kinase K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3] D LRK53_00565 two-component sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D LRK53_05020 HAMP domain-containing histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D LRK53_14935 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D LRK53_14980 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D LRK53_05750 Hpt domain-containing protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D LRK53_05870 ATP-binding protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:rth01009] D LRK53_16495 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D LRK53_13765 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D LRK53_12085 protein phosphatase 2C domain-containing protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] C 01002 Peptidases and inhibitors [BR:rth01002] D LRK53_07745 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D LRK53_05925 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D LRK53_01885 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D LRK53_11155 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D LRK53_08695 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D LRK53_00070 glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D LRK53_00685 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D LRK53_04320 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D LRK53_11600 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D LRK53_09845 asnB; asparagine synthase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D LRK53_15385 amidotransferase 1, exosortase A system-associated K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D LRK53_17515 L,D-transpeptidase family protein K21470 ycbB; L,D-transpeptidase YcbB D LRK53_04620 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein D LRK53_07265 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein D LRK53_03500 M1 family metallopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6] D LRK53_02980 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D LRK53_02390 M3 family metallopeptidase K01414 prlC; oligopeptidase A [EC:3.4.24.70] D LRK53_01205 dcp; peptidyl-dipeptidase Dcp K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D LRK53_17555 M3 family metallopeptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D LRK53_06130 M4 family metallopeptidase K08604 hap; vibriolysin [EC:3.4.24.25] D LRK53_12690 M4 family metallopeptidase K08604 hap; vibriolysin [EC:3.4.24.25] D LRK53_06905 M13 family peptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-] D LRK53_07110 M13 family peptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-] D LRK53_15910 M13 family metallopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-] D LRK53_17055 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D LRK53_00710 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-] D LRK53_00715 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-] D LRK53_03425 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-] D LRK53_16125 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D LRK53_17735 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D LRK53_17045 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D LRK53_14340 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D LRK53_06710 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D LRK53_16840 pepQ; Xaa-Pro dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D LRK53_12325 aminopeptidase P family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D LRK53_16865 aminopeptidase P N-terminal domain-containing protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D LRK53_12905 M28 family peptidase K01301 NAALAD; N-acetylated-alpha-linked acidic dipeptidase [EC:3.4.17.21] D LRK53_12235 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D LRK53_13770 htpX; protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D LRK53_13580 M48 family metalloprotease K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D LRK53_06670 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D LRK53_17380 zinc-dependent peptidase K09933 mtfA; MtfA peptidase D LRK53_11995 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D LRK53_17720 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D LRK53_14840 trypsin-like peptidase domain-containing protein K04772 degQ; serine protease DegQ [EC:3.4.21.-] D LRK53_16930 S8 family serine peptidase K17734 aprX; serine protease AprX [EC:3.4.21.-] D LRK53_00625 prolyl oligopeptidase family serine peptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D LRK53_01775 prolyl oligopeptidase family serine peptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D LRK53_17780 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D LRK53_12145 clpP; ATP-dependent Clp endopeptidase proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D LRK53_12135 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D LRK53_09900 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D LRK53_18665 hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D LRK53_11985 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D LRK53_03520 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D LRK53_06805 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D LRK53_03740 S41 family peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D LRK53_17760 carboxy terminal-processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D LRK53_14240 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11] D LRK53_03985 sppA; signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-] D LRK53_18920 S49 family peptidase K04773 sppA; protease IV [EC:3.4.21.-] D LRK53_02800 pre-peptidase C-terminal domain-containing protein K05999 E3.4.21.101; xanthomonalisin [EC:3.4.21.101] D LRK53_03680 S53 family peptidase K08677 kscP; kumamolisin [EC:3.4.21.123] D LRK53_07095 rhomboid family intramembrane serine protease K07059 K07059; rhomboid family protein D LRK53_05420 ldcA; muramoyltetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D LRK53_02310 hslV; ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D LRK53_05855 isoaspartyl peptidase/L-asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D LRK53_15220 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D LRK53_06580 pmbA; metalloprotease PmbA K03592 pmbA; PmbA protein D LRK53_06565 tldD; metalloprotease TldD K03568 tldD; TldD protein D LRK53_00870 alpha-2-macroglobulin family protein K06894 yfhM; alpha-2-macroglobulin D LRK53_09540 hflC; protease modulator HflC K04087 hflC; modulator of FtsH protease HflC D LRK53_09535 hflK; FtsH protease activity modulator HflK K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:rth01003] D LRK53_05970 glycosyltransferase family 4 protein K13668 pimB; phosphatidyl-myo-inositol dimannoside synthase [EC:2.4.1.346] D LRK53_04550 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D LRK53_00875 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D LRK53_15845 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D LRK53_16710 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D LRK53_18015 cyclic beta 1-2 glucan synthetase K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397] C 01005 Lipopolysaccharide biosynthesis proteins [BR:rth01005] D LRK53_06650 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D LRK53_06645 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D LRK53_16220 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D LRK53_06660 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D LRK53_13610 UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D LRK53_12570 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D LRK53_01095 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D LRK53_01725 lpxL; LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D LRK53_13555 aspartyl/asparaginyl beta-hydroxylase domain-containing protein K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D LRK53_01730 waaA; lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D LRK53_08790 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166] D LRK53_12315 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D LRK53_09765 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D LRK53_15685 HAD hydrolase family protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D LRK53_15680 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D LRK53_02895 O-antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26] D LRK53_08785 glycosyltransferase family 9 protein K12982 opsX; heptosyltransferase I [EC:2.4.-.-] D LRK53_04545 glycosyltransferase family 2 protein K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] D LRK53_18635 glycosyltransferase family 2 protein K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rth01011] D LRK53_15670 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D LRK53_12790 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D LRK53_16245 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D LRK53_16270 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D LRK53_16240 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D LRK53_09565 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D LRK53_05420 ldcA; muramoyltetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D LRK53_16260 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D LRK53_16250 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D LRK53_00300 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D LRK53_08365 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D LRK53_10850 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D LRK53_10985 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D LRK53_18575 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D LRK53_07720 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D LRK53_16710 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D LRK53_15845 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D LRK53_00875 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D LRK53_17800 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D LRK53_16275 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D LRK53_17780 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D LRK53_04550 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D LRK53_17515 L,D-transpeptidase family protein K21470 ycbB; L,D-transpeptidase YcbB D LRK53_17055 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D LRK53_01145 transglycosylase SLT domain-containing protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D LRK53_17790 mltB; lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D LRK53_08285 transglycosylase SLT domain-containing protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D LRK53_12110 transglycosylase SLT domain-containing protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D LRK53_08910 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D LRK53_17785 septal ring lytic transglycosylase RlpA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D LRK53_13470 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:rth01004] D LRK53_08880 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D LRK53_08875 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D LRK53_02270 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D LRK53_14695 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D LRK53_08895 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D LRK53_02255 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LRK53_07375 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LRK53_08885 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LRK53_18050 glucose 1-dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D LRK53_14700 fabA; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D LRK53_06655 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D LRK53_02230 hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D LRK53_11910 trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D LRK53_05830 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D LRK53_14015 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D LRK53_03630 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D LRK53_00080 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D LRK53_09440 prpE; propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D LRK53_09335 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D LRK53_13650 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D LRK53_00095 AMP-binding protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D LRK53_10525 acyl-CoA synthetase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D LRK53_10575 AMP-binding protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D LRK53_03560 plsB; glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:rth01006] D LRK53_06600 polyprenyl synthetase family protein K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D LRK53_04785 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D LRK53_06685 uppS; polyprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D LRK53_07490 phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D LRK53_09520 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D LRK53_03065 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D LRK53_01315 cyoE; heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:rth01007] D LRK53_08380 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D LRK53_05225 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D LRK53_13775 gluQRS; tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D LRK53_17855 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D LRK53_17330 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D LRK53_07520 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D LRK53_17915 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D LRK53_08210 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D LRK53_07740 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D LRK53_05600 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D LRK53_07170 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D LRK53_09860 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D LRK53_05100 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D LRK53_07390 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D LRK53_08765 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D LRK53_01895 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D LRK53_01900 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D LRK53_11695 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D LRK53_05570 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D LRK53_06730 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D LRK53_13630 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D LRK53_06760 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D LRK53_06765 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D LRK53_09430 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D LRK53_04055 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D LRK53_03475 aspartate/tyrosine/aromatic aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D LRK53_09300 pyridoxal phosphate-dependent aminotransferase K14287 ybdL; methionine transaminase [EC:2.6.1.88] D LRK53_08465 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D LRK53_09490 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D LRK53_03035 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D LRK53_01815 acetylornithine/succinylornithine family transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D LRK53_06930 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D LRK53_05775 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D LRK53_01835 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D LRK53_03115 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D LRK53_16515 branched-chain amino acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D LRK53_09750 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D LRK53_07000 DegT/DnrJ/EryC1/StrS family aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:rth00194] D LRK53_02200 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D LRK53_02195 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D LRK53_02190 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D LRK53_02185 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D LRK53_02180 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D LRK53_02175 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D LRK53_02170 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D LRK53_02165 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:rth03000] D LRK53_01975 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D LRK53_11245 ada; bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D LRK53_12520 helix-turn-helix domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D LRK53_13955 LysR substrate-binding domain-containing protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D LRK53_02695 LysR substrate-binding domain-containing protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D LRK53_05255 LysR substrate-binding domain-containing protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D LRK53_09350 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D LRK53_09195 LysR substrate-binding domain-containing protein K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D LRK53_00805 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D LRK53_02445 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D LRK53_09640 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D LRK53_08115 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D LRK53_00680 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D LRK53_12495 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D LRK53_01745 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D LRK53_13680 TetR/AcrR family transcriptional regulator K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon D LRK53_00205 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LRK53_03530 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LRK53_09555 winged helix-turn-helix transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LRK53_10470 MarR family winged helix-turn-helix transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D LRK53_16645 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D LRK53_03435 MarR family transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D LRK53_12660 MarR family transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D LRK53_13105 MarR family transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D LRK53_09925 merR; Hg(II)-responsive transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D LRK53_08670 heavy metal-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D LRK53_09950 heavy metal-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D LRK53_11415 fur; ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D LRK53_08415 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D LRK53_16970 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D LRK53_14515 cyclic nucleotide-binding domain-containing protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D LRK53_14740 helix-turn-helix domain-containing protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D LRK53_17195 helix-turn-helix domain-containing protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D LRK53_00775 metalloregulator ArsR/SmtB family transcription factor K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D LRK53_08185 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D LRK53_17370 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D LRK53_01590 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D LRK53_16365 sigma 54-interacting transcriptional regulator K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D LRK53_18655 type II toxin-antitoxin system MqsA family antitoxin K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D LRK53_00945 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D LRK53_10405 HigA family addiction module antitoxin K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D LRK53_10795 HigA family addiction module antitoxin K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D LRK53_15090 sigma-54-dependent Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D LRK53_06205 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D LRK53_12470 helix-turn-helix domain-containing protein K07726 K07726; putative transcriptional regulator D LRK53_01430 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator D LRK53_01265 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D LRK53_14305 NosR/NirI family protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D LRK53_09875 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D LRK53_02475 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D LRK53_18900 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D LRK53_11395 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D LRK53_13540 glycine cleavage system protein R K03567 gcvR; glycine cleavage system transcriptional repressor D LRK53_11565 rnk; nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D LRK53_07535 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D LRK53_05715 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator D LRK53_00430 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor D LRK53_07505 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D LRK53_10185 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor D LRK53_05395 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D LRK53_16290 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:rth03021] D LRK53_06490 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D LRK53_06335 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D LRK53_06340 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D LRK53_16750 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D LRK53_01085 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D LRK53_00445 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D LRK53_00650 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D LRK53_12005 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D LRK53_04580 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D LRK53_04205 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D LRK53_03735 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor D LRK53_15705 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor D LRK53_14995 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA D LRK53_07105 rapA; RNA polymerase-associated protein RapA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-] D LRK53_09065 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D LRK53_05430 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D LRK53_06310 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D LRK53_14820 glutathione S-transferase N-terminal domain-containing protein K03599 sspA; stringent starvation protein A D LRK53_14815 ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B D LRK53_06270 SpoIIE family protein phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D LRK53_00430 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor D LRK53_07505 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D LRK53_10185 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor D LRK53_11355 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D LRK53_08270 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D LRK53_03700 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:rth03019] D LRK53_11470 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] D LRK53_06540 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D LRK53_11975 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D LRK53_09655 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D LRK53_08585 ribonuclease K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D LRK53_11525 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D LRK53_03710 DEAD/DEAH box helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D LRK53_07310 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D LRK53_07300 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D LRK53_15600 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D LRK53_10955 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D LRK53_12305 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D LRK53_09090 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D LRK53_10195 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D LRK53_03700 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D LRK53_11385 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D LRK53_01650 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D LRK53_10190 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D LRK53_09525 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D LRK53_12780 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D LRK53_13595 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D LRK53_06210 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D LRK53_13510 pcnB; polynucleotide adenylyltransferase PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D LRK53_01960 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D LRK53_13625 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator D LRK53_18800 carbon storage regulator K03563 csrA; carbon storage regulator D LRK53_15720 rapZ; RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ D LRK53_15885 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] D LRK53_02785 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:rth03011] D LRK53_11325 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D LRK53_06705 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D LRK53_06400 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D LRK53_06485 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D LRK53_06455 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D LRK53_07400 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D LRK53_06350 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D LRK53_06440 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D LRK53_16915 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D LRK53_06365 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D LRK53_06480 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D LRK53_06345 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D LRK53_06475 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D LRK53_06435 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D LRK53_09085 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D LRK53_07435 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D LRK53_06415 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D LRK53_07405 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D LRK53_06390 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D LRK53_07715 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D LRK53_01365 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D LRK53_08430 30S ribosomal protein THX K19033 PSRP4; 30S ribosomal protein S31 D LRK53_06320 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D LRK53_06385 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D LRK53_06370 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D LRK53_06375 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D LRK53_06430 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D LRK53_06445 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D LRK53_07410 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D LRK53_06325 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D LRK53_06315 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D LRK53_06330 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D LRK53_16920 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D LRK53_06420 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D LRK53_06465 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D LRK53_06405 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D LRK53_06495 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D LRK53_06450 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D LRK53_07450 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D LRK53_06755 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D LRK53_13410 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D LRK53_06395 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D LRK53_06380 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D LRK53_06425 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D LRK53_13405 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D LRK53_03640 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D LRK53_06410 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D LRK53_06460 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D LRK53_16725 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D LRK53_08870 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D LRK53_03635 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D LRK53_18115 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D LRK53_06750 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D LRK53_11350 ykgO; type B 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D LRK53_06250 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D LRK53_01875 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D LRK53_17830 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D LRK53_17850 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D LRK53_01855 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D LRK53_17835 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D LRK53_01870 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:rth03009] D LRK53_11975 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D LRK53_12865 serine protein kinase RIO K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D LRK53_11525 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D LRK53_04765 GTP-binding protein K03595 era; GTPase D LRK53_11970 era; GTPase Era K03595 era; GTPase D LRK53_13400 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] D LRK53_00430 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor D LRK53_07505 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D LRK53_10185 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor D LRK53_09065 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D LRK53_05430 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D LRK53_06310 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D LRK53_12840 rRNA pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D LRK53_16190 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D LRK53_02905 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D LRK53_12845 class I SAM-dependent methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D LRK53_15240 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D LRK53_05765 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D LRK53_02455 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D LRK53_16285 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D LRK53_16300 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D LRK53_09660 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D LRK53_12240 rlmE; 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D LRK53_07250 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D LRK53_01470 class I SAM-dependent rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D LRK53_08040 rlmJ; 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D LRK53_14000 rlmKL; bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D LRK53_11195 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D LRK53_11940 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D LRK53_09315 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D LRK53_09485 rRNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D LRK53_11465 RluA family pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D LRK53_05045 rluD; 23S rRNA pseudouridine(1911/1915/1917) synthase RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D LRK53_02720 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D LRK53_01375 pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D LRK53_05590 rimI; ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D LRK53_02360 GNAT family N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D LRK53_16530 rimK; 30S ribosomal protein S6--L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D LRK53_07440 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM D LRK53_08260 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D LRK53_01600 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D LRK53_08300 prmB; 50S ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D LRK53_09170 cupin domain-containing protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D LRK53_11470 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] D LRK53_06540 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D LRK53_05710 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D LRK53_02835 dbpA; ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D LRK53_07300 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D LRK53_04060 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D LRK53_11170 der; ribosome biogenesis GTPase Der K03977 engA; GTPase D LRK53_09530 hflX; GTPase HflX K03665 hflX; GTPase D LRK53_02935 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D LRK53_16745 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D LRK53_09075 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A D LRK53_09060 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP D LRK53_08575 RNA-binding S4 domain-containing protein K14761 rlbA; ribosome-associated protein D LRK53_07245 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein D LRK53_14860 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor D LRK53_12245 yhbY; ribosome assembly RNA-binding protein YhbY K07574 yhbY; RNA-binding protein D LRK53_06570 DUF615 domain-containing protein K09889 yjgA; ribosome-associated protein D LRK53_15710 raiA; ribosome-associated translation inhibitor RaiA K05808 hpf; ribosome hibernation promoting factor D LRK53_06260 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase D LRK53_08865 YceD family protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:rth03016] D LRK53_08585 ribonuclease K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D LRK53_01130 multifunctional CCA addition/repair protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D LRK53_08380 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D LRK53_05570 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D LRK53_07740 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D LRK53_07170 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D LRK53_08210 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D LRK53_05225 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D LRK53_17915 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D LRK53_09860 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D LRK53_05100 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D LRK53_13630 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D LRK53_07390 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D LRK53_06730 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D LRK53_11695 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D LRK53_07520 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D LRK53_05600 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D LRK53_08765 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D LRK53_06760 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D LRK53_06765 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D LRK53_17855 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D LRK53_17330 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D LRK53_01090 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D LRK53_08830 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D LRK53_16550 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D LRK53_17505 tsaA; tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D LRK53_08335 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D LRK53_09080 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D LRK53_12280 truD; tRNA pseudouridine(13) synthase TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D LRK53_02935 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D LRK53_09520 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D LRK53_02290 mnmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D LRK53_02970 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D LRK53_05795 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D LRK53_18110 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D LRK53_16295 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA D LRK53_09700 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-] D LRK53_16795 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D LRK53_12770 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D LRK53_12970 thpR; RNA 2',3'-cyclic phosphodiesterase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D LRK53_13035 hypothetical protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D LRK53_05385 ettA; energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA D LRK53_01895 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D LRK53_01900 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D LRK53_13775 gluQRS; tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D LRK53_11150 tadA; tRNA adenosine(34) deaminase TadA K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D LRK53_17400 dusA; tRNA dihydrouridine(20/20a) synthase DusA K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D LRK53_16445 dusB; tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D LRK53_14850 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D LRK53_07445 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D LRK53_15630 RNA methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D LRK53_03415 tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D LRK53_03400 pseudouridine synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D LRK53_09715 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D LRK53_03470 ttcA; tRNA 2-thiocytidine(32) synthetase TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D LRK53_07395 iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein D LRK53_12635 folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ D LRK53_06835 queA; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D LRK53_05175 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D LRK53_02150 queD; 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D LRK53_05170 queE; 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D LRK53_03330 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D LRK53_13485 queG; tRNA epoxyqueuosine(34) reductase QueG K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D LRK53_06840 tgt; tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D LRK53_06610 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D LRK53_15780 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D LRK53_01370 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D LRK53_13475 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D LRK53_13790 tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D LRK53_09655 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D LRK53_09090 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D LRK53_10195 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:rth03012] D LRK53_09070 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D LRK53_06735 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D LRK53_09825 ATP-binding cassette domain-containing protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D LRK53_06700 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D LRK53_06295 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D LRK53_06360 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D LRK53_04665 fusA; elongation factor G K02355 fusA; elongation factor G D LRK53_06355 fusA; elongation factor G K02355 fusA; elongation factor G D LRK53_15990 elongation factor G K02355 fusA; elongation factor G D LRK53_06215 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D LRK53_06690 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D LRK53_16095 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D LRK53_06255 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D LRK53_09735 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D LRK53_07465 efp; elongation factor P K02356 efp; elongation factor P D LRK53_07640 yeiP; elongation factor P-like protein YeiP K02356 efp; elongation factor P D LRK53_11555 genX; EF-P lysine aminoacylase GenX K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D LRK53_07460 epmB; EF-P beta-lysylation protein EpmB K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-] D LRK53_09850 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D LRK53_04625 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D LRK53_10180 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D LRK53_03395 arfB; aminoacyl-tRNA hydrolase K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:rth03110] D LRK53_09730 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D LRK53_05055 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D LRK53_12140 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D LRK53_02305 hslU; ATP-dependent protease ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D LRK53_13765 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D LRK53_11385 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D LRK53_01650 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D LRK53_10190 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D LRK53_11380 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D LRK53_09130 DnaJ domain-containing protein K05516 cbpA; curved DNA-binding protein D LRK53_04275 djlA; co-chaperone DjlA K05801 djlA; DnaJ like chaperone protein D LRK53_04555 Hsp33 family molecular chaperone HslO K04083 hslO; molecular chaperone Hsp33 D LRK53_11390 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D LRK53_09125 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein D LRK53_17575 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein D LRK53_13700 RNA-binding S4 domain-containing protein K04762 hslR; ribosome-associated heat shock protein Hsp15 D LRK53_01645 co-chaperone GroES K04078 groES; chaperonin GroES D LRK53_11995 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D LRK53_17720 Do family serine endopeptidase K04771 degP; serine protease Do [EC:3.4.21.107] D LRK53_12235 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D LRK53_02165 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D LRK53_03645 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D LRK53_14070 copper chaperone PCu(A)C K09796 pccA; periplasmic copper chaperone A D LRK53_00825 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D LRK53_13605 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D LRK53_09415 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D LRK53_12115 SurA N-terminal domain-containing protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D LRK53_12860 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D LRK53_12040 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D LRK53_13450 FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D LRK53_07325 peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D LRK53_13850 peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D LRK53_14600 peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D LRK53_16180 peptidylprolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D LRK53_03705 trxA; thioredoxin TrxA K03671 TXN; thioredoxin D LRK53_13950 trxC; thioredoxin TrxC K03672 trxC; thioredoxin 2 [EC:1.8.1.8] D LRK53_07145 trxA; thioredoxin K05838 ybbN; putative thioredoxin D LRK53_08435 glutaredoxin K03674 grxA; glutaredoxin 1 D LRK53_13575 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3 D LRK53_04040 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin D LRK53_14775 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin D LRK53_01165 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D LRK53_01170 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D LRK53_06500 disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D LRK53_05290 DsbC family protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D LRK53_19180 DsbC family protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D LRK53_12735 DsbE family thiol:disulfide interchange protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:rth04131] D LRK53_11200 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D LRK53_17125 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D LRK53_17145 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D LRK53_02545 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D LRK53_10995 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D LRK53_17135 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D LRK53_13765 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system C 03051 Proteasome [BR:rth03051] D LRK53_13765 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:rth03032] D LRK53_12095 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D LRK53_01975 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D LRK53_12130 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D LRK53_18140 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D LRK53_06770 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D LRK53_11320 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D LRK53_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D LRK53_07415 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D LRK53_18435 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D LRK53_01345 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D LRK53_04845 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LRK53_18215 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LRK53_06630 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D LRK53_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D LRK53_19130 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D LRK53_16130 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D LRK53_07180 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D LRK53_08920 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D LRK53_12090 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D LRK53_08815 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D LRK53_06640 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D LRK53_01570 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D LRK53_03765 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D LRK53_11560 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D LRK53_15640 hda; DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein D LRK53_09115 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D LRK53_00020 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D LRK53_14200 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D LRK53_08540 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D LRK53_02930 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:rth03036] D LRK53_01975 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D LRK53_11975 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D LRK53_17125 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D LRK53_05565 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D LRK53_18700 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D LRK53_12130 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D LRK53_18140 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D LRK53_06770 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D LRK53_11320 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D LRK53_09130 DnaJ domain-containing protein K05516 cbpA; curved DNA-binding protein D LRK53_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D LRK53_00370 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein D LRK53_15890 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein D LRK53_01590 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D LRK53_09525 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D LRK53_00205 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LRK53_03530 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LRK53_09555 winged helix-turn-helix transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LRK53_09880 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein D LRK53_09325 segregation/condensation protein A K05896 scpA; segregation and condensation protein A D LRK53_09320 scpB; SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B D LRK53_16230 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D LRK53_12300 ftsB; cell division protein FtsB K05589 ftsB; cell division protein FtsB D LRK53_03715 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D LRK53_16275 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D LRK53_11745 DNA translocase FtsK 4TM domain-containing protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D LRK53_16280 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL D LRK53_16235 cell division protein FtsQ/DivIB K03589 ftsQ; cell division protein FtsQ D LRK53_16255 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D LRK53_03720 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D LRK53_16225 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D LRK53_09885 zipA; cell division protein ZipA K03528 zipA; cell division protein ZipA D LRK53_16880 cell division protein ZapA K09888 zapA; cell division protein ZapA D LRK53_16875 TIGR02449 family protein K09892 zapB; cell division protein ZapB D LRK53_02565 AFG1 family ATPase K06916 zapE; cell division protein ZapE D LRK53_13470 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D LRK53_07940 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D LRK53_14115 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D LRK53_14120 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D LRK53_14125 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D LRK53_17815 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D LRK53_17810 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D LRK53_17805 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D LRK53_17795 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D LRK53_02470 ParA family protein K03496 parA; chromosome partitioning protein D LRK53_11675 AAA family ATPase K03496 parA; chromosome partitioning protein D LRK53_17970 ParA family protein K03496 parA; chromosome partitioning protein D LRK53_18905 AAA family ATPase K03496 parA; chromosome partitioning protein D LRK53_02475 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D LRK53_18900 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D LRK53_14200 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D LRK53_08540 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D LRK53_02970 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D LRK53_02455 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D LRK53_02315 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D LRK53_05285 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D LRK53_08235 apbC; iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning D LRK53_16470 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D LRK53_01180 GTP-binding protein K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:rth03400] D LRK53_12525 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LRK53_03730 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D LRK53_14140 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D LRK53_15255 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D LRK53_08200 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D LRK53_17140 S1/P1 nuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1] D LRK53_05915 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LRK53_14230 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LRK53_17900 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LRK53_11245 ada; bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D LRK53_11255 alkB; DNA oxidative demethylase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] D LRK53_06530 mismatch-specific DNA-glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] D LRK53_02070 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D LRK53_11260 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D LRK53_12520 helix-turn-helix domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D LRK53_03005 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D LRK53_03605 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D LRK53_02400 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D LRK53_17880 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D LRK53_09835 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D LRK53_18145 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D LRK53_03765 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D LRK53_11560 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D LRK53_01570 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D LRK53_13420 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D LRK53_14375 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D LRK53_09770 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D LRK53_01560 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D LRK53_18405 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D LRK53_06335 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D LRK53_06340 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D LRK53_06490 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D LRK53_16750 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D LRK53_08005 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D LRK53_13685 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D LRK53_13465 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D LRK53_11530 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D LRK53_11825 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D LRK53_06605 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D LRK53_06630 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D LRK53_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D LRK53_19130 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D LRK53_16130 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D LRK53_07180 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D LRK53_08920 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D LRK53_12090 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D LRK53_08815 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D LRK53_04845 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LRK53_18215 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LRK53_01980 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] D LRK53_07845 UvrD-helicase domain-containing protein K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D LRK53_07850 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D LRK53_07840 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D LRK53_13640 recA; recombinase RecA K03553 recA; recombination protein RecA D LRK53_05120 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D LRK53_05130 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D LRK53_05115 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D LRK53_03955 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D LRK53_07420 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D LRK53_00015 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D LRK53_16735 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D LRK53_18225 DEAD/DEAH box helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D LRK53_11965 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D LRK53_08825 recR; recombination mediator RecR K06187 recR; recombination protein RecR D LRK53_11400 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D LRK53_03480 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC D LRK53_02640 cas1f; type I-F CRISPR-associated endonuclease Cas1f K15342 cas1; CRISP-associated protein Cas1 D LRK53_02655 cas4; CRISPR-associated protein Cas4 K15342 cas1; CRISP-associated protein Cas1 D LRK53_08280 DUF853 domain-containing protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D LRK53_18180 WGR domain-containing protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D LRK53_09115 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D LRK53_00020 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D LRK53_02930 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D LRK53_12130 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D LRK53_18140 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D LRK53_01590 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D LRK53_06770 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D LRK53_11320 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D LRK53_15600 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D LRK53_05565 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D LRK53_18700 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D LRK53_04225 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D LRK53_09900 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D LRK53_18665 hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D LRK53_09905 imuA; translesion DNA synthesis-associated protein ImuA K14160 imuA; protein ImuA D LRK53_18670 imuA; translesion DNA synthesis-associated protein ImuA K14160 imuA; protein ImuA D LRK53_09910 DNA polymerase Y family protein K14161 imuB; protein ImuB D LRK53_18675 DNA polymerase Y family protein K14161 imuB; protein ImuB D LRK53_09915 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D LRK53_18685 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D LRK53_13635 recombination regulator RecX K03565 recX; regulatory protein D LRK53_03580 UvrD-helicase domain-containing protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D LRK53_03855 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D LRK53_15830 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D LRK53_08445 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LRK53_17715 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LRK53_03355 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D LRK53_08440 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:rth03029] D LRK53_14830 cytochrome bc complex cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D LRK53_09070 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D LRK53_06735 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D LRK53_06700 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D LRK53_06295 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D LRK53_06360 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D LRK53_04665 fusA; elongation factor G K02355 fusA; elongation factor G D LRK53_06355 fusA; elongation factor G K02355 fusA; elongation factor G D LRK53_15990 elongation factor G K02355 fusA; elongation factor G D LRK53_04765 GTP-binding protein K03595 era; GTPase D LRK53_11970 era; GTPase Era K03595 era; GTPase D LRK53_17855 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D LRK53_07170 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D LRK53_05100 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D LRK53_17915 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D LRK53_04845 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LRK53_18215 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LRK53_06665 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D LRK53_11385 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D LRK53_11390 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D LRK53_01650 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D LRK53_10190 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D LRK53_01645 co-chaperone GroES K04078 groES; chaperonin GroES D LRK53_11380 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D LRK53_04040 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin D LRK53_14775 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin D LRK53_08235 apbC; iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning D LRK53_01315 cyoE; heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] D LRK53_01310 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D LRK53_18105 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D LRK53_01300 SURF1 family protein K14998 SURF1; surfeit locus 1 family protein D LRK53_13085 SCO family protein K07152 SCO1; protein SCO1 D LRK53_14065 SCO family protein K07152 SCO1; protein SCO1 D LRK53_17175 SCO family protein K07152 SCO1; protein SCO1 D LRK53_13765 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:rth02000] D LRK53_12575 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D LRK53_08630 ABC transporter ATP-binding protein/permease K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D LRK53_11885 ATP-binding cassette domain-containing protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D LRK53_08550 ABC transporter ATP-binding protein/permease K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D LRK53_00560 ABC transporter ATP-binding protein/permease K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial D LRK53_16475 ATP-binding cassette domain-containing protein K15738 uup; ABC transport system ATP-binding/permease protein D LRK53_12180 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D LRK53_12175 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D LRK53_12170 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D LRK53_12165 cysA; sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D LRK53_14570 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D LRK53_14575 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D LRK53_14580 modC; molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D LRK53_09030 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D LRK53_09040 ABC transporter permease subunit K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D LRK53_09035 ABC transporter permease subunit K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D LRK53_13010 ABC transporter permease subunit K05845 opuC; osmoprotectant transport system substrate-binding protein D LRK53_13005 ATP-binding cassette domain-containing protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D LRK53_02465 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D LRK53_16770 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D LRK53_16775 mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D LRK53_16780 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D LRK53_16765 ABC transporter substrate-binding protein K07323 mlaC; phospholipid transport system substrate-binding protein D LRK53_16760 STAS domain-containing protein K07122 mlaB; phospholipid transport system transporter-binding protein D LRK53_02425 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D LRK53_02420 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D LRK53_02415 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D LRK53_09695 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D LRK53_17725 substrate-binding domain-containing protein K02040 pstS; phosphate transport system substrate-binding protein D LRK53_09690 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D LRK53_09685 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein D LRK53_09680 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D LRK53_13870 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D LRK53_13865 ABC transporter permease K02072 metI; D-methionine transport system permease protein D LRK53_13860 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D LRK53_05660 cobalamin-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D LRK53_04375 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein D LRK53_04380 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D LRK53_16120 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein D LRK53_16115 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D LRK53_15700 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D LRK53_01445 ABC transporter permease subunit K09696 natB; sodium transport system permease protein D LRK53_01440 ATP-binding cassette domain-containing protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D LRK53_14325 ABC transporter permease K19341 nosY; Cu-processing system permease protein D LRK53_14320 ABC transporter ATP-binding protein K19340 nosF; Cu-processing system ATP-binding protein D LRK53_03620 ABC transporter permease K25151 gldF; gliding motility-associated transport system permease protein D LRK53_14085 ABC transporter permease subunit K25151 gldF; gliding motility-associated transport system permease protein D LRK53_03625 ABC transporter ATP-binding protein K25152 gldA; gliding motility-associated transport system ATP-binding protein D LRK53_14090 ABC transporter ATP-binding protein K25152 gldA; gliding motility-associated transport system ATP-binding protein D LRK53_03615 GldG family protein K25153 gldG; gliding motility-associatede transport system auxiliary component D LRK53_14080 GldG family protein K25153 gldG; gliding motility-associatede transport system auxiliary component D LRK53_14425 ABC transporter permease K25180 ybhR; drug efflux transport system permease protein D LRK53_14420 ABC transporter permease K25181 ybhS; drug efflux transport system permease protein D LRK53_14415 ATP-binding cassette domain-containing protein K25182 ybhF; drug efflux transport system ATP-binding protein D LRK53_14410 hlyD; secretion protein HlyD K25183 ybhG; membrane fusion protein YbhG D LRK53_12600 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein D LRK53_12595 lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D LRK53_12720 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D D LRK53_12715 heme ABC transporter permease K02195 ccmC; heme exporter protein C D LRK53_12710 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D LRK53_12705 ccmA; cytochrome c biogenesis heme-transporting ATPase CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D LRK53_03720 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D LRK53_03715 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D LRK53_01380 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D LRK53_09255 ABC-2 transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D LRK53_10465 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D LRK53_12985 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D LRK53_04175 ABC transporter permease subunit K01992 ABC-2.P; ABC-2 type transport system permease protein D LRK53_00120 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D LRK53_01385 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D LRK53_09260 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D LRK53_12990 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D LRK53_04980 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D LRK53_04985 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D LRK53_05510 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D LRK53_05515 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D LRK53_05520 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D LRK53_05525 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D LRK53_05530 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D LRK53_05535 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D LRK53_05820 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D LRK53_07030 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D LRK53_07610 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D LRK53_05505 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D LRK53_05825 ATP-binding cassette domain-containing protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D LRK53_07025 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D LRK53_07600 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D LRK53_06880 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D LRK53_01335 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D LRK53_03980 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump D LRK53_15595 sugar porter family MFS transporter K08139 HXT; MFS transporter, SP family, sugar:H+ symporter D LRK53_04955 fucP; L-fucose:H+ symporter permease K02429 fucP; MFS transporter, FHS family, L-fucose permease D LRK53_16325 nucleoside permease K11537 xapB; MFS transporter, NHS family, xanthosine permease D LRK53_11540 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D LRK53_07320 MFS transporter K08178 JEN; MFS transporter, SHS family, lactate transporter D LRK53_14590 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D LRK53_14595 NarK/NasA family nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D LRK53_17875 MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D LRK53_03915 TCR/Tet family MFS transporter K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D LRK53_14160 multidrug effflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D LRK53_00725 DHA2 family efflux MFS transporter permease subunit K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D LRK53_10475 DHA2 family efflux MFS transporter permease subunit K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D LRK53_12675 DHA2 family efflux MFS transporter permease subunit K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D LRK53_13235 MFS transporter K08170 norB; MFS transporter, DHA2 family, multidrug resistance protein D LRK53_12785 MFS transporter K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D LRK53_12540 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D LRK53_04080 MFS transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D LRK53_15735 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D LRK53_15730 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D LRK53_15725 PTS fructose IIA subunit family protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D LRK53_00315 ammonium transporter K03320 amt; ammonium transporter, Amt family D LRK53_01580 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LRK53_03340 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LRK53_07990 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LRK53_09220 gstA; glutathione transferase GstA K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LRK53_13135 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LRK53_16480 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LRK53_07270 MAPEG family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D LRK53_14820 glutathione S-transferase N-terminal domain-containing protein K03599 sspA; stringent starvation protein A D LRK53_16660 tetratricopeptide repeat protein K07114 yfbK; Ca-activated chloride channel homolog D LRK53_16665 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog D LRK53_16605 mscL; large-conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel D LRK53_08625 DUF3772 domain-containing protein K05802 mscK; potassium-dependent mechanosensitive channel D LRK53_04170 mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D LRK53_12285 mgtE; magnesium transporter K06213 mgtE; magnesium transporter D LRK53_14975 flagellar motor protein K02556 motA; chemotaxis protein MotA D LRK53_14970 motD; flagellar motor protein MotD K02557 motB; chemotaxis protein MotB D LRK53_00035 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB D LRK53_12585 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB D LRK53_00040 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD D LRK53_00045 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD D LRK53_12580 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD D LRK53_05140 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ D LRK53_05145 tolR; protein TolR K03560 tolR; biopolymer transport protein TolR D LRK53_14875 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D LRK53_14165 crcB; fluoride efflux transporter CrcB K06199 crcB; fluoride exporter D LRK53_09930 merT; mercuric ion transporter MerT K08363 merT; mercuric ion transport protein D LRK53_09935 merP; mercury resistance system periplasmic binding protein MerP K08364 merP; periplasmic mercuric ion binding protein D LRK53_09940 merF; mercury resistance system transport protein MerF K19058 merC; mercuric ion transport protein D LRK53_15625 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D LRK53_09480 OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D LRK53_01250 outer membrane protein transport protein K06076 fadL; long-chain fatty acid transport protein D LRK53_01405 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein D LRK53_02955 autotransporter domain-containing protein K12686 apeE; outer membrane lipase/esterase D LRK53_07510 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor D LRK53_17435 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor D LRK53_00695 btuB; TonB-dependent vitamin B12 receptor K16092 btuB; vitamin B12 transporter D LRK53_00820 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LRK53_00855 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LRK53_03240 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LRK53_03255 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LRK53_03270 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LRK53_05085 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LRK53_06185 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LRK53_07205 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LRK53_08125 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LRK53_08725 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LRK53_09025 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LRK53_09370 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LRK53_09380 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LRK53_11645 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LRK53_13720 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LRK53_15485 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LRK53_04660 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D LRK53_00880 TolC family protein K15725 czcC; outer membrane protein, heavy metal efflux system D LRK53_08145 TolC family protein K15725 czcC; outer membrane protein, heavy metal efflux system D LRK53_18625 TolC family protein K15725 czcC; outer membrane protein, heavy metal efflux system D LRK53_08080 TolC family protein K15725 czcC; outer membrane protein, heavy metal efflux system D LRK53_10875 TolC family protein K15725 czcC; outer membrane protein, heavy metal efflux system D LRK53_18550 TolC family protein K15725 czcC; outer membrane protein, heavy metal efflux system D LRK53_01735 TolC family outer membrane protein K12340 tolC; outer membrane protein D LRK53_15435 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D LRK53_00330 carbohydrate porin K07267 oprB; porin D LRK53_06665 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D LRK53_11175 bamB; outer membrane protein assembly factor BamB K17713 bamB; outer membrane protein assembly factor BamB D LRK53_05040 outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD D LRK53_11420 bamE; outer membrane protein assembly factor BamE K06186 bamE; outer membrane protein assembly factor BamE D LRK53_15900 autotransporter assembly complex protein TamA K07278 tamA; translocation and assembly module TamA D LRK53_15905 translocation/assembly module TamB domain-containing protein K09800 tamB; translocation and assembly module TamB D LRK53_15695 lptA; lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA D LRK53_15690 lptC; LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC D LRK53_16175 lptD; LPS assembly protein LptD K04744 lptD; LPS-assembly protein D LRK53_07175 hypothetical protein K03643 lptE; LPS-assembly lipoprotein D LRK53_14865 CBS domain-containing protein K06189 corC; hemolysin (HlyC) family protein D LRK53_15520 MFS transporter K16211 malY; maltose/moltooligosaccharide transporter D LRK53_13140 cycA; D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter D LRK53_04865 APC family permease K20265 gadC; glutamate:GABA antiporter D LRK53_08425 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D LRK53_10855 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D LRK53_18570 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D LRK53_08155 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein D LRK53_08390 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein D LRK53_10865 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein D LRK53_17070 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein D LRK53_18560 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein D LRK53_08090 CusA/CzcA family heavy metal efflux RND transporter K07787 cusA; copper/silver efflux system protein D LRK53_10895 CusA/CzcA family heavy metal efflux RND transporter K07787 cusA; copper/silver efflux system protein D LRK53_18530 CusA/CzcA family heavy metal efflux RND transporter K07787 cusA; copper/silver efflux system protein D LRK53_07935 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D LRK53_02595 efflux RND transporter permease subunit K07788 mdtB; multidrug efflux pump D LRK53_00700 efflux RND transporter permease subunit K07789 mdtC; multidrug efflux pump D LRK53_00705 efflux RND transporter permease subunit K07789 mdtC; multidrug efflux pump D LRK53_02600 efflux RND transporter permease subunit K07789 mdtC; multidrug efflux pump D LRK53_09670 sugE; quaternary ammonium compound efflux SMR transporter SugE K11741 sugE; quaternary ammonium compound-resistance protein SugE D LRK53_11860 EamA family transporter K11939 rhtA; inner membrane transporter RhtA D LRK53_12995 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter D LRK53_01235 monovalent cation:proton antiporter-2 (CPA2) family protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D LRK53_12045 cation:proton antiporter K26735 KEA4_5_6; K+:H+ antiporter D LRK53_11575 cation:proton antiporter K26730 napA; Na+:H+ antiporter D LRK53_08750 cytosine permease K10974 codB; cytosine permease D LRK53_04725 hypothetical protein K06901 pbuG; adenine/guanine/hypoxanthine permease D LRK53_16905 chloride channel protein K03281 clcA; chloride channel protein, CIC family D LRK53_13240 chloride channel protein K03281 clcA; chloride channel protein, CIC family D LRK53_10205 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family D LRK53_00910 monovalent cation/H+ antiporter subunit A K05559 phaA; multicomponent K+:H+ antiporter subunit A D LRK53_00915 Na+/H+ antiporter subunit C K05560 phaC; multicomponent K+:H+ antiporter subunit C D LRK53_00920 monovalent cation/H+ antiporter subunit D K05561 phaD; multicomponent K+:H+ antiporter subunit D D LRK53_00925 Na+/H+ antiporter subunit E K05562 phaE; multicomponent K+:H+ antiporter subunit E D LRK53_00930 K+/H+ antiporter subunit F K05563 phaF; multicomponent K+:H+ antiporter subunit F D LRK53_00935 mnhG; monovalent cation/H(+) antiporter subunit G K05564 phaG; multicomponent K+:H+ antiporter subunit G D LRK53_07720 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D LRK53_13710 AEC family transporter K24180 mleP; malate permease and related proteins D LRK53_05125 potassium transporter Kup K03549 kup; KUP system potassium uptake protein D LRK53_13100 AzlC family ABC transporter permease K26605 azlC; branched chain amino acid efflux pump D LRK53_13095 AzlD domain-containing protein K26606 azlD; branched chain amino acid efflux pump D LRK53_12385 VIT family protein K22736 VIT; vacuolar iron transporter family protein D LRK53_16255 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D LRK53_04655 manganese efflux pump MntP family protein K23242 mntP; manganese efflux pump family protein D LRK53_10840 FTR1 family protein K07243 FTR; high-affinity iron transporter D LRK53_13390 FTR1 family protein K07243 FTR; high-affinity iron transporter D LRK53_17265 FTR1 family protein K07243 FTR; high-affinity iron transporter D LRK53_18585 FTR1 family protein K07243 FTR; high-affinity iron transporter D LRK53_17280 iron transporter K07230 p19; periplasmic iron binding protein D LRK53_00030 energy transducer TonB K03832 tonB; periplasmic protein TonB D LRK53_02380 energy transducer TonB K03832 tonB; periplasmic protein TonB D LRK53_04510 energy transducer TonB K03832 tonB; periplasmic protein TonB D LRK53_05720 energy transducer TonB K03832 tonB; periplasmic protein TonB D LRK53_17990 energy transducer TonB K03832 tonB; periplasmic protein TonB D LRK53_18120 energy transducer TonB K03832 tonB; periplasmic protein TonB D LRK53_05160 pal; peptidoglycan-associated lipoprotein Pal K03640 pal; peptidoglycan-associated lipoprotein D LRK53_05150 cell envelope integrity protein TolA K03646 tolA; colicin import membrane protein D LRK53_05155 tolB; Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein D LRK53_01780 sodium-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D LRK53_14620 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D LRK53_14615 narH; nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D LRK53_14605 narI; respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D LRK53_00730 efflux RND transporter periplasmic adaptor subunit K03543 emrA; membrane fusion protein, multidrug efflux system D LRK53_12670 efflux RND transporter periplasmic adaptor subunit K03543 emrA; membrane fusion protein, multidrug efflux system D LRK53_08150 efflux RND transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D LRK53_08395 efflux RND transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D LRK53_10870 efflux RND transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D LRK53_17075 efflux RND transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D LRK53_18555 efflux RND transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D LRK53_08085 efflux RND transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D LRK53_10900 efflux RND transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D LRK53_18525 efflux RND transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D LRK53_07940 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D LRK53_02585 efflux RND transporter periplasmic adaptor subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D LRK53_15425 exopolysaccharide biosynthesis protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D LRK53_15430 chain length-determining protein K25590 epsF; protein tyrosine kinase modulator D LRK53_13725 pnuC; nicotinamide riboside transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter D LRK53_07700 ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A D LRK53_07705 ferrous iron transporter B K04759 feoB; ferrous iron transport protein B D LRK53_12730 heme lyase CcmF/NrfE family subunit K02198 ccmF; cytochrome c-type biogenesis protein CcmF D LRK53_06920 MipA/OmpV family protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:rth02044] D LRK53_01735 TolC family outer membrane protein K12340 tolC; outer membrane protein D LRK53_15415 AAA family ATPase K02450 gspA; general secretion pathway protein A D LRK53_02780 gspD; type II secretion system secretin GspD K02453 gspD; general secretion pathway protein D D LRK53_01890 GspE/PulE family protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D LRK53_02730 gspE; type II secretion system ATPase GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D LRK53_02735 gspF; type II secretion system inner membrane protein GspF K02455 gspF; general secretion pathway protein F D LRK53_02740 gspG; type II secretion system major pseudopilin GspG K02456 gspG; general secretion pathway protein G D LRK53_02745 GspH/FimT family pseudopilin K02457 gspH; general secretion pathway protein H D LRK53_02750 prepilin-type N-terminal cleavage/methylation domain-containing protein K02458 gspI; general secretion pathway protein I D LRK53_02755 prepilin-type N-terminal cleavage/methylation domain-containing protein K02459 gspJ; general secretion pathway protein J D LRK53_02760 general secretion pathway protein GspK K02460 gspK; general secretion pathway protein K D LRK53_02765 PilN domain-containing protein K02461 gspL; general secretion pathway protein L D LRK53_02770 gspM; type II secretion system protein GspM K02462 gspM; general secretion pathway protein M D LRK53_02775 general secretion pathway protein GspN K02463 gspN; general secretion pathway protein N D LRK53_05780 type II secretion system protein N K02463 gspN; general secretion pathway protein N D LRK53_05925 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D LRK53_06010 pilin K02650 pilA; type IV pilus assembly protein PilA D LRK53_06015 pilin K02650 pilA; type IV pilus assembly protein PilA D LRK53_05940 pilB; type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D LRK53_05935 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC D LRK53_05210 type IV pilin protein K02655 pilE; type IV pilus assembly protein PilE D LRK53_07825 prepilin-type N-terminal cleavage/methylation domain-containing protein K02655 pilE; type IV pilus assembly protein PilE D LRK53_11190 pilW; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D LRK53_05730 pilG; twitching motility response regulator PilG K02657 pilG; twitching motility two-component system response regulator PilG D LRK53_05735 response regulator K02658 pilH; twitching motility two-component system response regulator PilH D LRK53_09135 pilH; twitching motility response regulator PilH K02658 pilH; twitching motility two-component system response regulator PilH D LRK53_05740 chemotaxis protein CheW K02659 pilI; twitching motility protein PilI D LRK53_05745 methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ D LRK53_16705 pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D LRK53_16700 PilN domain-containing protein K02663 pilN; type IV pilus assembly protein PilN D LRK53_16695 pilO; type 4a pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO D LRK53_16690 pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP D LRK53_16685 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ D LRK53_05685 type IV pilus twitching motility protein PilT K02669 pilT; twitching motility protein PilT D LRK53_04295 PilT/PilU family type 4a pilus ATPase K02670 pilU; twitching motility protein PilU D LRK53_05690 PilT/PilU family type 4a pilus ATPase K02670 pilU; twitching motility protein PilU D LRK53_05200 pilV; type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D LRK53_07800 pilV; type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D LRK53_05195 PilW family protein K02672 pilW; type IV pilus assembly protein PilW D LRK53_07805 prepilin-type N-terminal cleavage/methylation domain-containing protein K02672 pilW; type IV pilus assembly protein PilW D LRK53_07810 PilX N-terminal domain-containing pilus assembly protein K02673 pilX; type IV pilus assembly protein PilX D LRK53_05185 pilus assembly protein PilY K02674 pilY1; type IV pilus assembly protein PilY1 D LRK53_07820 pilus assembly protein PilY K02674 pilY1; type IV pilus assembly protein PilY1 D LRK53_08930 PilZ domain-containing protein K02676 pilZ; type IV pilus assembly protein PilZ D LRK53_05205 GspH/FimT family pseudopilin K08084 fimT; type IV fimbrial biogenesis protein FimT D LRK53_07795 GspH/FimT family pseudopilin K08084 fimT; type IV fimbrial biogenesis protein FimT D LRK53_14380 GspH/FimT family pseudopilin K08084 fimT; type IV fimbrial biogenesis protein FimT D LRK53_08330 fimbrial protein FimV K08086 fimV; pilus assembly protein FimV D LRK53_05675 YggT family protein K02221 yggT; YggT family protein D LRK53_07075 helix-hairpin-helix domain-containing protein K02237 comEA; competence protein ComEA D LRK53_12590 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D LRK53_15010 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D LRK53_15015 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D LRK53_14955 flagellar biosynthesis protein K04061 flhB2; flagellar biosynthesis protein D LRK53_15080 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D LRK53_15070 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D LRK53_15065 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D LRK53_15040 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D LRK53_15035 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D LRK53_15030 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP D LRK53_15025 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D LRK53_15020 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D LRK53_18865 conjugal transfer protein TraG N-terminal domain-containing protein K12056 traG; conjugal transfer mating pair stabilization protein TraG D LRK53_18875 conjugal transfer protein TraF K12057 traF; conjugal transfer pilus assembly protein TraF D LRK53_18785 traN; conjugal transfer protein TraN K12058 traN; conjugal transfer mating pair stabilization protein TraN D LRK53_18790 hypothetical protein K12058 traN; conjugal transfer mating pair stabilization protein TraN D LRK53_18795 TraU family protein K12060 traU; conjugal transfer pilus assembly protein TraU D LRK53_18805 hypothetical protein K12061 traW; conjugal transfer pilus assembly protein TraW D LRK53_18810 S26 family signal peptidase K12062 trbI; conjugal transfer pilin signal peptidase TrbI D LRK53_18820 traC; type IV secretion system protein TraC K12063 traC; conjugal transfer ATP-binding protein TraC D LRK53_18830 TraV family lipoprotein K12064 traV; conjugal transfer pilus assembly protein TraV D LRK53_18835 TraB/VirB10 family protein K12065 traB; conjugal transfer pilus assembly protein TraB D LRK53_18840 type-F conjugative transfer system secretin TraK K12066 traK; conjugal transfer pilus assembly protein TraK D LRK53_18845 hypothetical protein K12067 traE; conjugal transfer pilus assembly protein TraE D LRK53_18850 traL; type IV conjugative transfer system protein TraL K12068 traL; conjugal transfer pilus assembly protein TraL D LRK53_18825 hypothetical protein K12069 traA; conjugal transfer pilus assembly protein TraA D LRK53_18245 TraI domain-containing protein K12070 traI; conjugal transfer pilus assembly protein TraI D LRK53_18250 traD; conjugative transfer system coupling protein TraD K12071 traD; conjugal transfer pilus assembly protein TraD D LRK53_05290 DsbC family protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D LRK53_19180 DsbC family protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D LRK53_18870 conjugal transfer protein TraH K12072 traH; conjugative transfer pilus assembly protein TraH D LRK53_02955 autotransporter domain-containing protein K12686 apeE; outer membrane lipase/esterase D LRK53_01415 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D LRK53_01405 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein D LRK53_16205 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D LRK53_03645 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D LRK53_06850 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D LRK53_06305 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D LRK53_06855 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D LRK53_11490 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D LRK53_06470 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D LRK53_07430 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D LRK53_15245 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D LRK53_06845 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D LRK53_18105 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D LRK53_03940 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D LRK53_14335 tatA; twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D LRK53_03945 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB D LRK53_03950 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:rth02042] D LRK53_15625 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D LRK53_14690 hemolysin III family protein K11068 hlyIII; hemolysin III D LRK53_17430 hemolysin III family protein K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:rth02022] D LRK53_13590 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D LRK53_13585 phoB; phosphate regulon transcriptional regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D LRK53_17385 two-component sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D LRK53_17390 response regulator transcription factor K07660 phoP; two-component system, OmpR family, response regulator PhoP D LRK53_00900 two-component sensor histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D LRK53_00905 response regulator K07666 qseB; two-component system, OmpR family, response regulator QseB D LRK53_17090 ATP-binding protein K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D LRK53_14455 two-component sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D LRK53_07045 response regulator K02483 K02483; two-component system, OmpR family, response regulator D LRK53_08405 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator D LRK53_17100 pdsR; proteobacterial dedicated sortase system response regulator K02483 K02483; two-component system, OmpR family, response regulator D LRK53_14460 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator D LRK53_11410 MASE1 domain-containing protein K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3] D LRK53_11405 response regulator transcription factor K20264 fusR; two-component system, NarL family, response regulator FusR D LRK53_11475 response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D LRK53_00615 histidine kinase K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3] D LRK53_00610 LytTR family DNA-binding domain-containing protein K08083 algR; two-component system, LytTR family, response regulator AlgR D LRK53_00565 two-component sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D LRK53_00570 ntrC; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D LRK53_05020 HAMP domain-containing histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D LRK53_04990 sigma-54 dependent transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR D LRK53_15305 prsR; PEP-CTERM-box response regulator transcription factor K02481 flgR; two-component system, NtrC family, response regulator D LRK53_14935 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D LRK53_14980 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D LRK53_14940 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D LRK53_14990 chemotaxis response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D LRK53_14905 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D LRK53_15180 chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D LRK53_18880 hypothetical protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D LRK53_05750 Hpt domain-containing protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D LRK53_05730 pilG; twitching motility response regulator PilG K02657 pilG; twitching motility two-component system response regulator PilG D LRK53_05735 response regulator K02658 pilH; twitching motility two-component system response regulator PilH D LRK53_09135 pilH; twitching motility response regulator PilH K02658 pilH; twitching motility two-component system response regulator PilH D LRK53_05755 chemotaxis protein CheB K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase) D LRK53_05870 ATP-binding protein K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D LRK53_05865 response regulator transcription factor K15012 regA; two-component system, response regulator RegA C 02035 Bacterial motility proteins [BR:rth02035] D LRK53_14935 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D LRK53_14980 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D LRK53_14925 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D LRK53_14965 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D LRK53_14910 cheD; chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D LRK53_14915 protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D LRK53_14905 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D LRK53_14940 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D LRK53_14990 chemotaxis response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D LRK53_14985 protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ D LRK53_15180 chemotaxis protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D LRK53_18880 hypothetical protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D LRK53_08175 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D LRK53_14900 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D LRK53_14930 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D LRK53_15185 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D LRK53_15070 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D LRK53_15065 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D LRK53_15060 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D LRK53_15035 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D LRK53_15030 fliP; flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP D LRK53_15025 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D LRK53_15020 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D LRK53_15010 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D LRK53_15015 flhB; flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D LRK53_15075 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D LRK53_15045 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D LRK53_15040 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D LRK53_15080 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D LRK53_15140 flagellar basal body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI D LRK53_15190 flgA; flagellar basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D LRK53_15145 flgH; flagellar basal body L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH D LRK53_15050 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL D LRK53_15085 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D LRK53_15055 flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK D LRK53_15175 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D LRK53_15170 flgC; flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D LRK53_15165 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D LRK53_15155 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D LRK53_15150 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D LRK53_15135 flgJ; flagellar assembly peptidoglycan hydrolase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D LRK53_15160 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D LRK53_15130 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D LRK53_15125 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D LRK53_15200 flagellar protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN D LRK53_15110 fliD; flagellar filament capping protein FliD K02407 fliD; flagellar hook-associated protein 2 D LRK53_15105 fliS; flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS D LRK53_15100 flagellar protein FliT K02423 fliT; flagellar protein FliT D LRK53_14995 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA D LRK53_14975 flagellar motor protein K02556 motA; chemotaxis protein MotA D LRK53_14970 motD; flagellar motor protein MotD K02557 motB; chemotaxis protein MotB D LRK53_15090 sigma-54-dependent Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D LRK53_15195 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D LRK53_15005 flhF; flagellar biosynthesis protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF D LRK53_15000 P-loop NTPase K04562 flhG; flagellar biosynthesis protein FlhG D LRK53_05730 pilG; twitching motility response regulator PilG K02657 pilG; twitching motility two-component system response regulator PilG D LRK53_05735 response regulator K02658 pilH; twitching motility two-component system response regulator PilH D LRK53_09135 pilH; twitching motility response regulator PilH K02658 pilH; twitching motility two-component system response regulator PilH D LRK53_05740 chemotaxis protein CheW K02659 pilI; twitching motility protein PilI D LRK53_05745 methyl-accepting chemotaxis protein K02660 pilJ; twitching motility protein PilJ D LRK53_05750 Hpt domain-containing protein K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D LRK53_04990 sigma-54 dependent transcriptional regulator K02667 pilR; two-component system, NtrC family, response regulator PilR D LRK53_05020 HAMP domain-containing histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D LRK53_05685 type IV pilus twitching motility protein PilT K02669 pilT; twitching motility protein PilT D LRK53_04295 PilT/PilU family type 4a pilus ATPase K02670 pilU; twitching motility protein PilU D LRK53_05690 PilT/PilU family type 4a pilus ATPase K02670 pilU; twitching motility protein PilU D LRK53_05755 chemotaxis protein CheB K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase) D LRK53_05760 chemotaxis protein CheW K06598 chpC; chemosensory pili system protein ChpC D LRK53_06010 pilin K02650 pilA; type IV pilus assembly protein PilA D LRK53_06015 pilin K02650 pilA; type IV pilus assembly protein PilA D LRK53_05940 pilB; type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D LRK53_05935 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC D LRK53_05925 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D LRK53_11190 pilW; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D LRK53_16685 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ D LRK53_16690 pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP D LRK53_16695 pilO; type 4a pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO D LRK53_16700 PilN domain-containing protein K02663 pilN; type IV pilus assembly protein PilN D LRK53_16705 pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D LRK53_08930 PilZ domain-containing protein K02676 pilZ; type IV pilus assembly protein PilZ D LRK53_05200 pilV; type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D LRK53_07800 pilV; type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D LRK53_05195 PilW family protein K02672 pilW; type IV pilus assembly protein PilW D LRK53_07805 prepilin-type N-terminal cleavage/methylation domain-containing protein K02672 pilW; type IV pilus assembly protein PilW D LRK53_07810 PilX N-terminal domain-containing pilus assembly protein K02673 pilX; type IV pilus assembly protein PilX D LRK53_05185 pilus assembly protein PilY K02674 pilY1; type IV pilus assembly protein PilY1 D LRK53_07820 pilus assembly protein PilY K02674 pilY1; type IV pilus assembly protein PilY1 D LRK53_05210 type IV pilin protein K02655 pilE; type IV pilus assembly protein PilE D LRK53_07825 prepilin-type N-terminal cleavage/methylation domain-containing protein K02655 pilE; type IV pilus assembly protein PilE D LRK53_01415 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D LRK53_01405 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:rth04812] D LRK53_17815 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D LRK53_18910 ParM/StbA family protein K18640 parM; plasmid segregation protein ParM D LRK53_16225 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D LRK53_16230 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D LRK53_14115 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D LRK53_14120 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D LRK53_14125 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D LRK53_02470 ParA family protein K03496 parA; chromosome partitioning protein D LRK53_11675 AAA family ATPase K03496 parA; chromosome partitioning protein D LRK53_17970 ParA family protein K03496 parA; chromosome partitioning protein D LRK53_18905 AAA family ATPase K03496 parA; chromosome partitioning protein D LRK53_02475 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D LRK53_18900 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:rth04147] D LRK53_13765 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D LRK53_17125 fructose-bisphosphate aldolase class I K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D LRK53_10955 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D LRK53_12305 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D LRK53_17145 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D LRK53_04285 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D LRK53_17135 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D LRK53_13605 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D LRK53_17045 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D LRK53_01650 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D LRK53_10190 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D LRK53_11385 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D LRK53_18080 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D LRK53_11160 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D LRK53_06295 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D LRK53_06360 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D LRK53_08830 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D LRK53_01335 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D LRK53_09335 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D LRK53_13650 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D LRK53_10540 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_10715 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13375 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_13670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_17995 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRK53_16495 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D LRK53_01795 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D LRK53_05235 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D LRK53_07565 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D LRK53_07545 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D LRK53_04370 cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D LRK53_00140 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D LRK53_17825 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D LRK53_00320 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D LRK53_03685 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D LRK53_17215 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D LRK53_11460 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D LRK53_03230 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D LRK53_06795 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D LRK53_01585 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D LRK53_04190 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_09150 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRK53_04435 electron transfer flavoprotein subunit alpha/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit D LRK53_10675 FAD-binding protein K03522 fixB; electron transfer flavoprotein alpha subunit D LRK53_00675 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D LRK53_11495 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D LRK53_02545 gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D LRK53_10995 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D LRK53_13000 lipocalin family protein K03098 APOD; apolipoprotein D and lipocalin family protein C 02048 Prokaryotic defense system [BR:rth02048] D LRK53_02640 cas1f; type I-F CRISPR-associated endonuclease Cas1f K15342 cas1; CRISP-associated protein Cas1 D LRK53_02655 cas4; CRISPR-associated protein Cas4 K15342 cas1; CRISP-associated protein Cas1 D LRK53_02635 cas3f; type I-F CRISPR-associated helicase Cas3f K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D LRK53_02620 csy1; type I-F CRISPR-associated protein Csy1 K19127 csy1; CRISPR-associated protein Csy1 D LRK53_02615 csy2; type I-F CRISPR-associated protein Csy2 K19128 csy2; CRISPR-associated protein Csy2 D LRK53_02610 csy3; type I-F CRISPR-associated protein Csy3 K19129 csy3; CRISPR-associated protein Csy3 D LRK53_02605 cas6f; type I-F CRISPR-associated endoribonuclease Cas6/Csy4 K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-] D LRK53_01075 DEAD/DEAH box helicase family protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D LRK53_08640 HsdR family type I site-specific deoxyribonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D LRK53_01060 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D LRK53_08650 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D LRK53_01065 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D LRK53_08655 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D LRK53_01975 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D LRK53_04735 DEAD/DEAH box helicase family protein K01156 res; type III restriction enzyme [EC:3.1.21.5] D LRK53_01055 AAA family ATPase K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D LRK53_01050 McrC family protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC D LRK53_07730 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K07172 mazE; antitoxin MazE D LRK53_02660 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D LRK53_03890 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D LRK53_04715 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D LRK53_04325 type II toxin-antitoxin system ParD family antitoxin K07746 parD1_3_4; antitoxin ParD1/3/4 D LRK53_15925 type II toxin-antitoxin system death-on-curing family toxin K07341 doc; death on curing protein D LRK53_04470 type II toxin-antitoxin system RelE/ParE family toxin K07334 higB-1; toxin HigB-1 D LRK53_00945 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D LRK53_10405 HigA family addiction module antitoxin K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D LRK53_10795 HigA family addiction module antitoxin K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D LRK53_04465 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1 D LRK53_06040 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1 D LRK53_18660 type II toxin-antitoxin system MqsR family toxin K13651 mqsR; motility quorum-sensing regulator / GCU-specific mRNA interferase toxin D LRK53_18655 type II toxin-antitoxin system MqsA family antitoxin K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D LRK53_02630 type II toxin-antitoxin system VapC family toxin K07062 fitB; toxin FitB [EC:3.1.-.-] D LRK53_02625 plasmid stabilization protein K21495 fitA; antitoxin FitA D LRK53_16225 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D LRK53_17815 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D LRK53_14200 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D LRK53_08540 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D LRK53_08380 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D LRK53_12610 succinate dehydrogenase assembly factor 2 K09159 cptB; antitoxin CptB C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:rth01504] D LRK53_03915 TCR/Tet family MFS transporter K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D LRK53_17055 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D LRK53_17385 two-component sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D LRK53_17390 response regulator transcription factor K07660 phoP; two-component system, OmpR family, response regulator PhoP D LRK53_07940 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D LRK53_07935 multidrug efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D LRK53_01745 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D LRK53_08670 heavy metal-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D LRK53_09950 heavy metal-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D LRK53_01735 TolC family outer membrane protein K12340 tolC; outer membrane protein D LRK53_13235 MFS transporter K08170 norB; MFS transporter, DHA2 family, multidrug resistance protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:rth00537] D LRK53_03230 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D LRK53_17530 alpha,alpha-trehalase K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28] D LRK53_17045 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:rth03100] D LRK53_12050 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D LRK53_01865 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D LRK53_17840 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D LRK53_12775 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D LRK53_12230 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D LRK53_03290 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D LRK53_12220 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D LRK53_12810 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D LRK53_14745 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D LRK53_12060 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D LRK53_12120 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D LRK53_09790 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D LRK53_06240 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D LRK53_16910 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D LRK53_13515 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D LRK53_12055 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D LRK53_09780 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D LRK53_09785 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D LRK53_16540 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D LRK53_06285 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D LRK53_12215 tRNA-His K14226 tRNA-His; tRNA His D LRK53_01860 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D LRK53_17845 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D LRK53_09800 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LRK53_12760 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LRK53_09650 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LRK53_11485 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LRK53_12155 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D LRK53_05180 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D LRK53_12210 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D LRK53_09005 tRNA-Met K14230 tRNA-Met; tRNA Met D LRK53_01080 tRNA-Ile K14230 tRNA-Met; tRNA Met D LRK53_01965 tRNA-Met K14230 tRNA-Met; tRNA Met D LRK53_15265 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D LRK53_12225 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D LRK53_08760 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D LRK53_06780 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D LRK53_11685 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D LRK53_13620 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D LRK53_08805 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D LRK53_12080 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D LRK53_06290 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D LRK53_17355 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D LRK53_07785 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D LRK53_06300 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D LRK53_06280 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D LRK53_12125 tRNA-Val K14237 tRNA-Val; tRNA Val D LRK53_07905 tRNA-Val K14237 tRNA-Val; tRNA Val D LRK53_14370 tRNA-Val K14237 tRNA-Val; tRNA Val D LRK53_17850 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D LRK53_01855 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D LRK53_17835 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D LRK53_01870 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D LRK53_01875 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D LRK53_17830 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D LRK53_08810 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D LRK53_16295 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA D LRK53_11440 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D LRK53_17925 SDR family NAD(P)-dependent oxidoreductase K05886 sdh; serine 3-dehydrogenase (NADP+) [EC:1.1.1.276] D LRK53_00345 sorbitol dehydrogenase family protein K23274 fdhS; fructose 5-dehydrogenase small subunit [EC:1.1.5.14] D LRK53_01255 coniferyl aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] D LRK53_11340 NADPH-dependent 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D LRK53_15965 (2Fe-2S)-binding protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D LRK53_15970 molybdopterin-dependent oxidoreductase K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D LRK53_15805 NAD(P)-binding domain-containing protein K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D LRK53_04475 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D LRK53_01755 zinc-binding alcohol dehydrogenase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D LRK53_10690 NADPH:quinone oxidoreductase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D LRK53_09445 ahpF; alkyl hydroperoxide reductase subunit F K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-] D LRK53_08555 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D LRK53_09890 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D LRK53_09895 msrB; peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D LRK53_13940 msrB; peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D LRK53_12395 glutathione S-transferase N-terminal domain-containing protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D LRK53_14510 cytochrome b K12262 cybB; superoxide oxidase [EC:1.10.3.17] D LRK53_00555 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D LRK53_13545 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D LRK53_17165 tpx; thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D LRK53_09450 ahpC; alkyl hydroperoxide reductase subunit C K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D LRK53_07225 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D LRK53_02410 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D LRK53_11240 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D LRK53_12755 cysteine dioxygenase family protein K24700 mdo; 3-mercaptopropionate dioxygenase [EC:1.13.11.91] D LRK53_04035 aspartyl/asparaginyl beta-hydroxylase domain-containing protein K22616 olsC; ornithine lipid ester-linked acyl 2-hydroxylase [EC:1.14.11.58] D LRK53_17755 aspartyl/asparaginyl beta-hydroxylase domain-containing protein K22616 olsC; ornithine lipid ester-linked acyl 2-hydroxylase [EC:1.14.11.58] D LRK53_09945 merA; mercury(II) reductase K00520 merA; mercuric reductase [EC:1.16.1.1] D LRK53_17405 ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D LRK53_09310 arsC; arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D LRK53_11710 hyfB; hydrogenase 4 subunit B K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-] D LRK53_11720 formate hydrogenlyase K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-] D LRK53_11725 hydrogenase 4 subunit F K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-] D LRK53_01740 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D LRK53_12265 protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D LRK53_10215 cfa; cyclopropane fatty acyl phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D LRK53_14175 cfa; cyclopropane fatty acyl phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D LRK53_15560 GNAT family N-acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57] D LRK53_08560 arylamine N-acetyltransferase K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118] D LRK53_07660 GNAT family N-acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-] D LRK53_06945 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K14660 nodE; nodulation protein E [EC:2.3.1.-] D LRK53_02830 glutaminyl-peptide cyclotransferase K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5] D LRK53_11765 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D LRK53_08840 DUF3488 and transglutaminase-like domain-containing protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13] D LRK53_14025 arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D LRK53_05900 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D LRK53_14300 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D LRK53_12070 kinase/pyrophosphorylase K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D LRK53_01670 glnE; bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D LRK53_12815 YdiU family protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D LRK53_15715 hprK; HPr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D LRK53_07015 alpha/beta fold hydrolase K03928 yvaK; carboxylesterase [EC:3.1.1.1] D LRK53_16650 O-acetyl-ADP-ribose deacetylase K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D LRK53_07960 carboxylesterase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-] D LRK53_05135 ybgC; tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D LRK53_10565 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D LRK53_10640 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D LRK53_13425 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D LRK53_17975 histidine phosphatase family protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D LRK53_02725 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D LRK53_12655 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D LRK53_04925 hypothetical protein K03931 ygjK; glucosidase [EC:3.2.1.-] D LRK53_14010 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D LRK53_17065 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D LRK53_02915 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D LRK53_05340 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D LRK53_12380 penicillin acylase family protein K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97] D LRK53_08855 Maf family nucleotide pyrophosphatase K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D LRK53_16000 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D LRK53_16680 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D LRK53_13480 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D LRK53_13330 methylmalonyl-CoA mutase family protein K11942 icmF; isobutyryl-CoA mutase [EC:5.4.99.13] D LRK53_15370 FAD-dependent oxidoreductase K17810 asl; D-aspartate ligase [EC:6.3.1.12] D LRK53_01800 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D LRK53_08205 RnfABCDGE type electron transport complex subunit B K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D LRK53_08135 PepSY domain-containing protein K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D LRK53_11065 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D LRK53_11805 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D LRK53_14395 cation-translocating P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D LRK53_01325 mgtA; magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D LRK53_13525 ferredoxin family protein K05524 fdxA; ferredoxin D LRK53_17150 ferredoxin family protein K05524 fdxA; ferredoxin D LRK53_04440 electron transfer flavoprotein subunit beta/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit D LRK53_10680 electron transfer flavoprotein subunit beta/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit D LRK53_05640 dodecin domain-containing protein K09165 K09165; dodecin C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D LRK53_09615 VOC family protein K08234 yaeR; glyoxylase I family protein D LRK53_07085 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein D LRK53_03460 GNAT family N-acetyltransferase K22479 argA; N-acetyltransferase C 99986 Glycan metabolism D LRK53_11315 LapA family protein K08992 lapA; lipopolysaccharide assembly protein A D LRK53_11310 lapB; lipopolysaccharide assembly protein LapB K19804 lapB; lipopolysaccharide assembly protein B C 99987 Cofactor metabolism D LRK53_01545 tetratricopeptide repeat protein K02498 hemY; HemY protein D LRK53_03405 ubiB; ubiquinone biosynthesis regulatory protein kinase UbiB K03688 ubiB; ubiquinone biosynthesis protein D LRK53_11100 AarF/UbiB family protein K03688 ubiB; ubiquinone biosynthesis protein D LRK53_03410 SCP2 sterol-binding domain-containing protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D LRK53_03365 accessory factor UbiK family protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK C 99988 Secondary metabolism D LRK53_00360 NAD(P)H-dependent oxidoreductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) D LRK53_13965 NAD(P)H-dependent oxidoreductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) D LRK53_13185 NAD(P)H-dependent oxidoreductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) C 99999 Others D LRK53_00350 DoxX family protein K15977 K15977; putative oxidoreductase D LRK53_10055 DoxX family protein K15977 K15977; putative oxidoreductase D LRK53_12550 DoxX family protein K15977 K15977; putative oxidoreductase D LRK53_15800 DoxX family protein K15977 K15977; putative oxidoreductase D LRK53_00620 alpha/beta hydrolase K06999 K06999; phospholipase/carboxylesterase D LRK53_15790 phospholipase K06999 K06999; phospholipase/carboxylesterase B B 09192 Unclassified: genetic information processing C 99973 Transcription D LRK53_02395 cold-shock protein K03704 cspA; cold shock protein D LRK53_11915 cold-shock protein K03704 cspA; cold shock protein D LRK53_13820 cold-shock protein K03704 cspA; cold shock protein D LRK53_13825 cold-shock protein K03704 cspA; cold shock protein D LRK53_03360 glnK; P-II family nitrogen regulator K04752 glnK; nitrogen regulatory protein P-II 2 D LRK53_02960 RNA-binding transcriptional accessory protein K06959 tex; protein Tex C 99974 Translation D LRK53_10460 rbbA; ribosome-associated ATPase/putative transporter RbbA K13926 rbbA; ribosome-dependent ATPase D LRK53_11070 MBL fold metallo-hydrolase K07576 K07576; metallo-beta-lactamase family protein D LRK53_14440 MBL fold metallo-hydrolase K07576 K07576; metallo-beta-lactamase family protein D LRK53_14480 MBL fold metallo-hydrolase K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D LRK53_09725 clpS; ATP-dependent Clp protease adapter ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D LRK53_12150 tig; trigger factor K03545 tig; trigger factor D LRK53_11435 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein D LRK53_03370 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein D LRK53_00235 2OG-Fe(II) oxygenase K07394 K07394; SM-20-related protein D LRK53_13070 OsmC family protein K07397 yhfA; putative redox protein D LRK53_11455 NfuA family Fe-S biogenesis protein K07400 nfuA; Fe/S biogenesis protein NfuA D LRK53_12960 nodulation protein NfeD K07403 nfeD; membrane-bound serine protease (ClpP class) C 99976 Replication and repair D LRK53_15605 MGMT family protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D LRK53_02010 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC D LRK53_17910 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC D LRK53_01460 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC D LRK53_16310 YraN family protein K07460 yraN; putative endonuclease D LRK53_08770 GIY-YIG nuclease family protein K07461 K07461; putative endonuclease D LRK53_16485 GIY-YIG nuclease family protein K07461 K07461; putative endonuclease D LRK53_02925 dprA; DNA-processing protein DprA K04096 smf; DNA processing protein D LRK53_11700 replication-associated recombination protein A K07478 ycaJ; putative ATPase D LRK53_18380 toprim domain-containing protein K06919 K06919; putative DNA primase/helicase D LRK53_00955 tnpA; IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase D LRK53_07345 tnpA; IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase D LRK53_07900 tnpA; IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase D LRK53_12455 transposase K07491 rayT; REP-associated tyrosine transposase D LRK53_13315 transposase K07491 rayT; REP-associated tyrosine transposase D LRK53_17685 tnpA; IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase D LRK53_10760 helix-turn-helix domain-containing protein K07494 K07494; putative transposase C 99979 Viral proteins C 99998 Others D LRK53_08820 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D LRK53_07100 amino acid permease K03293 TC.AAT; amino acid transporter, AAT family D LRK53_03275 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D LRK53_05480 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D LRK53_08520 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D LRK53_08525 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D LRK53_15960 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D LRK53_04535 MFS transporter K03301 TC.AAA; ATP:ADP antiporter, AAA family D LRK53_05875 oligopeptide:H+ symporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D LRK53_08590 oligopeptide:H+ symporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D LRK53_17245 peptide MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D LRK53_17250 peptide MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D LRK53_10090 inorganic phosphate transporter family protein K03306 TC.PIT; inorganic phosphate transporter, PiT family D LRK53_15615 inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D LRK53_00480 O-antigen translocase K03328 TC.PST; polysaccharide transporter, PST family C 99978 Cell growth D LRK53_03745 peptidoglycan DD-metalloendopeptidase family protein K22719 envC; murein hydrolase activator C 99993 Cell motility D LRK53_01410 fimbria/pilus periplasmic chaperone K15540 ecpD; chaperone protein EcpD C 99995 Signaling proteins D LRK53_01920 ampE; regulatory signaling modulator protein AmpE K03807 ampE; AmpE protein D LRK53_05330 carbon starvation protein A K06200 cstA; carbon starvation protein D LRK53_09360 typA; translational GTPase TypA K06207 typA; GTP-binding protein D LRK53_14855 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D LRK53_13550 PhoH family protein K07175 phoH2; PhoH-like ATPase D LRK53_13920 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D LRK53_11740 lolA; outer membrane lipoprotein chaperone LolA K03634 lolA; outer membrane lipoprotein carrier protein D LRK53_06230 lolB; lipoprotein insertase outer membrane protein LolB K02494 lolB; outer membrane lipoprotein LolB D LRK53_16755 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D LRK53_12645 glycine zipper 2TM domain-containing protein K06077 slyB; outer membrane lipoprotein SlyB D LRK53_12255 peptidoglycan DD-metalloendopeptidase family protein K06194 nlpD; lipoprotein NlpD D LRK53_02535 DUF481 domain-containing protein K07283 ydiY; putative salt-induced outer membrane protein D LRK53_08035 Slp family lipoprotein K07285 slp; outer membrane lipoprotein D LRK53_08835 Slp family lipoprotein K07285 slp; outer membrane lipoprotein D LRK53_08165 AsmA family protein K07290 yhjG; AsmA family protein D LRK53_05555 NfeD family protein K07340 ybbJ; inner membrane protein D LRK53_10455 HlyD family efflux transporter periplasmic adaptor subunit K01993 ABC-2.TX; HlyD family secretion protein D LRK53_05500 efflux RND transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein D LRK53_07605 efflux RND transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein D LRK53_15785 creD; cell envelope integrity protein CreD K06143 creD; inner membrane protein D LRK53_12725 ccmE; cytochrome c maturation protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE D LRK53_12740 cytochrome c-type biogenesis protein CcmH K02200 ccmH; cytochrome c-type biogenesis protein CcmH D LRK53_12745 hypothetical protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D LRK53_11185 DUF4115 domain-containing protein K15539 rodZ; cytoskeleton protein RodZ C 99994 Others D LRK53_09675 phoU; phosphate signaling complex protein PhoU K02039 phoU; phosphate transport system protein D LRK53_01955 (2Fe-2S)-binding protein K02192 bfd; bacterioferritin-associated ferredoxin D LRK53_01640 divalent-cation tolerance protein CutA K03926 cutA; periplasmic divalent cation tolerance protein D LRK53_16195 apaG; Co2+/Mg2+ efflux protein ApaG K06195 apaG; ApaG protein D LRK53_14315 nitrous oxide reductase family maturation protein NosD K07218 nosD; nitrous oxidase accessory protein D LRK53_08060 copper resistance protein B K07233 pcoB; copper resistance protein B D LRK53_10920 copper resistance protein B K07233 pcoB; copper resistance protein B D LRK53_18505 copper resistance protein B K07233 pcoB; copper resistance protein B D LRK53_17190 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO D LRK53_14330 nitrous oxide reductase accessory protein NosL K19342 nosL; copper chaperone NosL B B 09194 Poorly characterized C 99996 General function prediction only D LRK53_08690 CvpA family protein K03558 cvpA; membrane protein required for colicin V production D LRK53_07160 MlaD family protein K06192 pqiB; paraquat-inducible protein B D LRK53_14135 chaB; putative cation transport regulator ChaB K06197 chaB; cation transport regulator D LRK53_18690 hypothetical protein K06198 coiA; competence protein CoiA D LRK53_05695 BON domain-containing protein K04065 osmY; hyperosmotically inducible periplasmic protein D LRK53_11285 tRNA-binding protein K06878 K06878; tRNA-binding protein D LRK53_17160 group III truncated hemoglobin K06886 glbN; hemoglobin D LRK53_00135 patatin-like phospholipase family protein K07001 K07001; NTE family protein D LRK53_02520 patatin-like phospholipase family protein K07001 K07001; NTE family protein D LRK53_12365 patatin-like phospholipase family protein K07001 K07001; NTE family protein D LRK53_17930 patatin-like phospholipase family protein K07001 K07001; NTE family protein D LRK53_10030 patatin-like phospholipase family protein K07001 K07001; NTE family protein D LRK53_17490 HAD family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily D LRK53_01935 erpA; iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein D LRK53_06875 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D LRK53_06885 sufD; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D LRK53_06165 YihY family inner membrane protein K07058 K07058; membrane protein D LRK53_07515 SufE family protein K02426 sufE; cysteine desulfuration protein SufE D LRK53_03030 sulfurtransferase K07146 K07146; UPF0176 protein D LRK53_09710 hflD; high frequency lysogenization protein HflD K07153 hflD; high frequency lysogenization protein D LRK53_12370 VOC family protein K04750 phnB; PhnB protein D LRK53_14075 cytochrome c oxidase assembly protein K02351 K02351; putative membrane protein D LRK53_04520 LemA family protein K03744 lemA; LemA protein D LRK53_05885 LemA family protein K03744 lemA; LemA protein D LRK53_12030 SlyX family protein K03745 slyX; SlyX protein D LRK53_08685 SPOR domain-containing protein K03749 dedD; DedD protein D LRK53_07150 paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D LRK53_07155 paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D LRK53_04680 DUF1304 domain-containing protein K08987 K08987; putative membrane protein D LRK53_03770 hypothetical protein K09858 K09858; SEC-C motif domain protein D LRK53_02950 YbaY family lipoprotein K09914 K09914; putative lipoprotein D LRK53_13015 alkylphosphonate utilization protein K06193 phnA; protein PhnA C 99997 Function unknown D LRK53_01240 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein D LRK53_05890 TPM domain-containing protein K06872 K06872; uncharacterized protein D LRK53_16140 50S ribosome-binding GTPase K06883 K06883; uncharacterized protein D LRK53_07280 YkgJ family cysteine cluster protein K06940 K06940; uncharacterized protein D LRK53_12830 YkgJ family cysteine cluster protein K06940 K06940; uncharacterized protein D LRK53_07230 N-acetyltransferase K06975 K06975; uncharacterized protein D LRK53_14110 GNAT family N-acetyltransferase K06977 K06977; uncharacterized protein D LRK53_17580 GNAT family N-acetyltransferase K06977 K06977; uncharacterized protein D LRK53_13190 SAM-dependent methyltransferase K06983 K06983; uncharacterized protein D LRK53_10300 MMPL family transporter K07003 K07003; uncharacterized protein D LRK53_10615 MMPL family transporter K07003 K07003; uncharacterized protein D LRK53_16410 efflux RND transporter permease subunit K07003 K07003; uncharacterized protein D LRK53_02570 alpha/beta hydrolase K07018 K07018; uncharacterized protein D LRK53_00225 alpha/beta fold hydrolase K07019 K07019; uncharacterized protein D LRK53_02405 YecA family protein K07039 K07039; uncharacterized protein D LRK53_07275 zinc metallopeptidase K07054 K07054; uncharacterized protein D LRK53_05960 nucleotidyltransferase family protein K07075 K07075; uncharacterized protein D LRK53_06070 nucleotidyltransferase family protein K07075 K07075; uncharacterized protein D LRK53_14210 nucleotidyltransferase family protein K07075 K07075; uncharacterized protein D LRK53_03600 nitroreductase family protein K07078 K07078; uncharacterized protein D LRK53_09175 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D LRK53_16975 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D LRK53_16030 SET domain-containing protein-lysine N-methyltransferase K07117 K07117; uncharacterized protein D LRK53_00375 NAD(P)-dependent oxidoreductase K07118 K07118; uncharacterized protein D LRK53_16305 penicillin-binding protein activator K07121 K07121; uncharacterized protein D LRK53_11500 SDR family oxidoreductase K07124 K07124; uncharacterized protein D LRK53_18230 sel1 repeat family protein K07126 K07126; uncharacterized protein D LRK53_03900 NAD(P)/FAD-dependent oxidoreductase K07137 K07137; uncharacterized protein D LRK53_01805 LON peptidase substrate-binding domain-containing protein K07157 K07157; uncharacterized protein D LRK53_07500 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein D LRK53_01850 DUF192 domain-containing protein K09005 K09005; uncharacterized protein D LRK53_01360 GatB/YqeY domain-containing protein K09117 K09117; uncharacterized protein D LRK53_17775 DUF493 family protein K09158 K09158; uncharacterized protein D LRK53_13460 DUF1684 domain-containing protein K09164 K09164; uncharacterized protein D LRK53_09870 YciI family protein K09780 K09780; uncharacterized protein D LRK53_17540 YbaN family protein K09790 K09790; uncharacterized protein D LRK53_17410 DUF456 domain-containing protein K09793 K09793; uncharacterized protein D LRK53_04310 YdcH family protein K09794 K09794; uncharacterized protein D LRK53_11425 RnfH family protein K09801 K09801; uncharacterized protein D LRK53_07165 PqiC family protein K09857 K09857; uncharacterized protein D LRK53_16870 UPF0149 family protein K09895 K09895; uncharacterized protein D LRK53_01245 YcgL domain-containing protein K09902 K09902; uncharacterized protein D LRK53_08025 DUF2058 domain-containing protein K09912 K09912; uncharacterized protein D LRK53_11760 GNAT family N-acetyltransferase K09919 K09919; uncharacterized protein D LRK53_12065 DUF1249 domain-containing protein K09920 K09920; uncharacterized protein D LRK53_02320 DUF484 family protein K09921 K09921; uncharacterized protein D LRK53_13415 DUF2059 domain-containing protein K09924 K09924; uncharacterized protein D LRK53_13835 winged helix DNA-binding domain-containing protein K09927 K09927; uncharacterized protein D LRK53_10045 DUF692 domain-containing protein K09930 K09930; uncharacterized protein D LRK53_10085 TIGR04282 family arsenosugar biosynthesis glycosyltransferase K09931 K09931; uncharacterized protein D LRK53_09545 DUF2065 domain-containing protein K09937 K09937; uncharacterized protein D LRK53_15650 DUF2066 domain-containing protein K09938 K09938; uncharacterized protein D LRK53_06595 DUF4870 domain-containing protein K09940 K09940; uncharacterized protein D LRK53_12825 DUF1415 domain-containing protein K09941 K09941; uncharacterized protein D LRK53_17170 hypothetical protein K09943 K09943; uncharacterized protein D LRK53_17335 YegP family protein K09946 K09946; uncharacterized protein D LRK53_00240 DUF3820 family protein K09954 K09954; uncharacterized protein D LRK53_06180 DUF779 domain-containing protein K09959 K09959; uncharacterized protein D LRK53_15580 ACT domain-containing protein K09964 K09964; uncharacterized protein D LRK53_14195 TraB/GumN family protein K09973 K09973; uncharacterized protein D LRK53_03850 HutD family protein K09975 K09975; uncharacterized protein D LRK53_11950 YdbL family protein K09978 K09978; uncharacterized protein D LRK53_03910 DUF1993 domain-containing protein K09983 K09983; uncharacterized protein D LRK53_11250 2OG-Fe(II) oxygenase K09990 K09990; uncharacterized protein D LRK53_15620 pit accessory protein K07220 K07220; uncharacterized protein D LRK53_01675 mitochondrial fission ELM1 family protein K07276 K07276; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 23, 2024