+D Transcription factors KO #

  Transcription Factors - Ruminococcus torques

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D RTO_14860 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RTO_32080 DNA-methyltransferase (dcm) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG TOX C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D RTO_20750 AraC-type DNA-binding domain-containing proteins K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein C LysR family C DeoR family D RTO_26540 Transcriptional regulators of sugar metabolism K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D RTO_31890 Stage III sporulation protein D. K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D C LacI family D RTO_08830 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RTO_10550 Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RTO_23220 Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RTO_27600 Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RTO_01650 transcriptional regulator, LacI family K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D RTO_06890 transcriptional regulator, LacI family K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D RTO_32300 Transcriptional regulators K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor C GntR family D RTO_25990 Transcriptional regulators K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor D RTO_13730 Transcriptional regulators K03710 K03710; GntR family transcriptional regulator D RTO_03510 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D RTO_18670 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family C Lrp/AsnC family C LuxR family C MarR family C MerR family C Fur family D RTO_15590 Fe2+/Zn2+ uptake regulation proteins K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D RTO_28170 Fe2+/Zn2+ uptake regulation proteins K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D RTO_01550 Fe2+/Zn2+ uptake regulation proteins K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family D RTO_09280 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family C Rrf2 family D RTO_31730 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor C ArsR family D RTO_28280 Predicted transcriptional regulators K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D RTO_05430 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D RTO_12360 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D RTO_28220 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor C XRE family C PadR family D RTO_06910 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator D RTO_11180 Predicted transcriptional regulators K10947 K10947; PadR family transcriptional regulator C Other families D RTO_11680 Mn-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D RTO_26710 Mn-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D RTO_28710 Mn-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D RTO_16410 Predicted transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D RTO_30410 birA, biotin-[acetyl-CoA-carboxylase] ligase region K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D RTO_17550 Predicted transcriptional regulators K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D RTO_05570 hypothetical protein K02647 cdaR; carbohydrate diacid regulator D RTO_06460 Sugar diacid utilization regulator K02647 cdaR; carbohydrate diacid regulator D RTO_10280 transcriptional regulator, CdaR family K02647 cdaR; carbohydrate diacid regulator D RTO_15670 Pleiotropic transcriptional repressor K03706 codY; transcriptional pleiotropic repressor D RTO_27730 Predicted transcriptional regulator K07726 K07726; putative transcriptional regulator D RTO_05050 Predicted transcriptional regulator K07727 K07727; putative transcriptional regulator D RTO_30860 Predicted transcriptional regulator K07727 K07727; putative transcriptional regulator D RTO_31410 hypothetical protein K07727 K07727; putative transcriptional regulator D RTO_32070 Predicted transcriptional regulator K07727 K07727; putative transcriptional regulator D RTO_04820 Predicted transcriptional regulators K07729 K07729; putative transcriptional regulator D RTO_28870 Predicted transcriptional regulators K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family D RTO_11100 transcriptional antiterminator, BglG family K03488 licT; beta-glucoside operon transcriptional antiterminator D RTO_07660 transcriptional antiterminator, BglG family K03480 glcT; transcriptional antiterminator C Others D RTO_03910 Uncharacterized protein conserved in bacteria K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D RTO_22160 Uncharacterized protein conserved in bacteria K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D RTO_32170 Regulator of polyketide synthase expression K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D RTO_07450 transcriptional regulator, AbrB family K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D RTO_01720 ParB-like nuclease domain. K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RTO_02580 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RTO_03060 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RTO_30600 ParB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RTO_06660 Glycerol-3-phosphate responsive antiterminator (mRNA-binding) K02443 glpP; glycerol uptake operon antiterminator D RTO_19770 transcriptional regulator, ArgR family K03402 argR; transcriptional regulator of arginine metabolism D RTO_15220 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D RTO_29410 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D RTO_16930 mraZ protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 21, 2025 #
Classification taken and modified from TRANSFAC 7.0