+E Transcription factors KO
#
Transcription Factors - Ruficoccus sp. ZRK36
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D K0V07_03125 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D K0V07_09780 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D K0V07_05270 AraC family transcriptional regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D K0V07_08235 AraC family transcriptional regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D K0V07_08350 helix-turn-helix domain-containing protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D K0V07_07120 AraC family transcriptional regulator K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D K0V07_11835 AraC family transcriptional regulator K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D K0V07_03695 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D K0V07_03860 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D K0V07_04165 AraC family transcriptional regulator K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator
C LysR family
C DeoR family
D K0V07_08395 DeoR/GlpR family DNA-binding transcription regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D K0V07_14015 DeoR/GlpR family DNA-binding transcription regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
C LacI family
D K0V07_12230 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_12280 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_12450 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_12980 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_13140 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_13160 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_13185 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_13380 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_13875 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_14020 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_14280 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_14645 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_15320 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_02165 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_04285 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_04620 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_04650 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_07220 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_07315 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_08170 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_08250 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_08480 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_09350 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_09370 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_12060 DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D K0V07_07190 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D K0V07_12235 LacI family transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
C GntR family
C TetR/AcrR family
D K0V07_01485 CerR family C-terminal domain-containing protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
C LuxR family
D K0V07_13175 LuxR C-terminal-related transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
C MerR family
D K0V07_12125 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D K0V07_01730 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D K0V07_10270 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D K0V07_10455 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D K0V07_11105 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D K0V07_15905 transcriptional repressor K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D K0V07_15670 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
D K0V07_11895 Crp/Fnr family transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
C Rrf2 family
C ArsR family
D K0V07_14400 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D K0V07_06710 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
C PadR family
C Other families
D K0V07_01830 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D K0V07_10245 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D K0V07_01840 MarR family transcriptional regulator K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D K0V07_04800 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D K0V07_13785 sigma 54-interacting transcriptional regulator K02584 nifA; Nif-specific regulatory protein
B Ribbon-helix-helix
C CopG family
D K0V07_13430 ribbon-helix-helix domain-containing protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
D K0V07_05475 ribbon-helix-helix domain-containing protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
D K0V07_10045 type II toxin-antitoxin system HicB family antitoxin K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
C Others
D K0V07_11115 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D K0V07_02305 hypothetical protein K05785 rfaH; transcriptional antiterminator RfaH
D K0V07_13125 hypothetical protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D K0V07_10960 hypothetical protein K03973 pspC; phage shock protein C
D K0V07_07725 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D K0V07_13320 helix-turn-helix domain-containing protein K07733 alpA; prophage regulatory protein
D K0V07_11450 helix-turn-helix domain-containing protein K07733 alpA; prophage regulatory protein
D K0V07_10635 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D K0V07_15155 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D K0V07_15990 hypothetical protein K03925 mraZ; transcriptional regulator MraZ
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
#
Classification taken and modified from TRANSFAC 7.0