+F Repair protein KO #

  DNA Repair and Recombination Proteins - Ruminococcus sp. SR1/5

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CK1_37280 O-6-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E CK1_34100 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CK1_15720 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E CK1_15790 Predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D CK1_11230 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CK1_34320 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CK1_18870 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CK1_37280 O-6-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E CK1_34100 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CK1_15790 Predicted EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CK1_18890 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E CK1_11670 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ D DNA ligase E CK1_31700 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E CK1_05510 pseudouridine synthase family K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E CK1_39420 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E CK1_20350 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E CK1_22210 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CK1_31700 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E CK1_05510 pseudouridine synthase family K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F CK1_25000 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F CK1_24990 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CK1_11380 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E CK1_10490 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E CK1_00840 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E CK1_01930 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E CK1_01940 Exonuclease VII small subunit. K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E CK1_00520 DNA polymerase III catalytic subunit, PolC type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E CK1_28210 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CK1_39520 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E CK1_28540 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E CK1_17210 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E CK1_31700 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E CK1_05510 pseudouridine synthase family K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E CK1_22210 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CK1_10160 single stranded DNA-binding protein (ssb) K03111 ssb; single-strand DNA-binding protein E CK1_30150 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E CK1_36390 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E CK1_03130 single stranded DNA-binding protein (ssb) K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E CK1_10200 ATP-dependent exoDNAse (exonuclease V), alpha subunit-helicase superfamily I member K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E CK1_26900 helicase, putative, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E CK1_39390 helicase, putative, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E CK1_33750 protein RecA K03553 recA; recombination protein RecA E CK1_07480 Holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA E CK1_07490 Holliday junction DNA helicase, RuvB subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CK1_22750 replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E CK1_20490 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E CK1_33750 protein RecA K03553 recA; recombination protein RecA E CK1_20190 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E CK1_07690 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CK1_18950 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E CK1_17230 recombination protein RecR K06187 recR; recombination protein RecR E CK1_02010 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E CK1_07880 Penicillin-binding protein-related factor A, putative recombinase K03700 recU; recombination protein U E CK1_14250 Penicillin-binding protein-related factor A, putative recombinase K03700 recU; recombination protein U E CK1_07480 Holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA E CK1_07490 Holliday junction DNA helicase, RuvB subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E CK1_36670 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E CK1_36690 ATP-dependent nuclease, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E CK1_25940 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 E CK1_18710 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E CK1_20490 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F CK1_18570 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CK1_28590 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CK1_18560 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CK1_28580 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CK1_00620 Topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F CK1_35520 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F CK1_14080 RecT family. K07455 recT; recombination protein RecT F CK1_18950 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F CK1_17230 recombination protein RecR K06187 recR; recombination protein RecR F CK1_31700 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F CK1_05510 pseudouridine synthase family K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F CK1_20540 ATP-dependent DNA helicase, RecQ-like K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F CK1_39420 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D CK1_10730 Nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D CK1_27020 Nucleotidyltransferase/DNA polymerase involved in DNA repair K03502 umuC; DNA polymerase V C Other SOS response factors D CK1_33750 protein RecA K03553 recA; recombination protein RecA D CK1_11080 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D CK1_02010 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CK1_10160 single stranded DNA-binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D CK1_30150 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D CK1_36390 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D CK1_03130 single stranded DNA-binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D CK1_33760 Uncharacterized protein conserved in bacteria K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D CK1_11230 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CK1_34320 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CK1_18870 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024